Multiple sequence alignment - TraesCS5A01G219900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G219900 chr5A 100.000 4629 0 0 349 4977 436627495 436622867 0.000000e+00 8549
1 TraesCS5A01G219900 chr5A 100.000 148 0 0 1 148 436627843 436627696 1.770000e-69 274
2 TraesCS5A01G219900 chr5D 95.661 4125 131 18 867 4977 335137436 335133346 0.000000e+00 6582
3 TraesCS5A01G219900 chr5D 87.237 619 31 20 900 1505 335225517 335224934 0.000000e+00 662
4 TraesCS5A01G219900 chr5D 88.889 189 19 2 1500 1687 335223658 335223471 1.080000e-56 231
5 TraesCS5A01G219900 chr5D 84.337 249 23 9 4167 4404 335223451 335223208 3.880000e-56 230
6 TraesCS5A01G219900 chr5D 85.345 116 17 0 4506 4621 335221163 335221048 2.430000e-23 121
7 TraesCS5A01G219900 chr5B 92.007 2427 137 20 980 3372 392143054 392140651 0.000000e+00 3354
8 TraesCS5A01G219900 chr5B 91.698 1614 111 14 3375 4977 392140586 392138985 0.000000e+00 2217
9 TraesCS5A01G219900 chr5B 94.569 939 46 3 981 1918 392153991 392153057 0.000000e+00 1447
10 TraesCS5A01G219900 chr5B 93.805 113 3 3 887 999 392154107 392153999 3.080000e-37 167
11 TraesCS5A01G219900 chr7A 89.206 945 59 20 2771 3679 177341629 177342566 0.000000e+00 1140
12 TraesCS5A01G219900 chr7A 90.476 714 51 8 4186 4896 177342574 177343273 0.000000e+00 926
13 TraesCS5A01G219900 chr7B 90.829 796 50 8 4187 4977 141006966 141007743 0.000000e+00 1044
14 TraesCS5A01G219900 chr7B 86.766 937 59 31 2771 3679 141006058 141006957 0.000000e+00 983
15 TraesCS5A01G219900 chr7D 87.261 942 59 25 2771 3679 175657882 175658795 0.000000e+00 1018
16 TraesCS5A01G219900 chr7D 89.008 373 22 5 4607 4977 175660585 175660940 1.270000e-120 444
17 TraesCS5A01G219900 chr7D 91.235 251 18 2 4177 4423 175658794 175659044 6.170000e-89 339


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G219900 chr5A 436622867 436627843 4976 True 4411.500000 8549 100.0000 1 4977 2 chr5A.!!$R1 4976
1 TraesCS5A01G219900 chr5D 335133346 335137436 4090 True 6582.000000 6582 95.6610 867 4977 1 chr5D.!!$R1 4110
2 TraesCS5A01G219900 chr5D 335221048 335225517 4469 True 311.000000 662 86.4520 900 4621 4 chr5D.!!$R2 3721
3 TraesCS5A01G219900 chr5B 392138985 392143054 4069 True 2785.500000 3354 91.8525 980 4977 2 chr5B.!!$R1 3997
4 TraesCS5A01G219900 chr5B 392153057 392154107 1050 True 807.000000 1447 94.1870 887 1918 2 chr5B.!!$R2 1031
5 TraesCS5A01G219900 chr7A 177341629 177343273 1644 False 1033.000000 1140 89.8410 2771 4896 2 chr7A.!!$F1 2125
6 TraesCS5A01G219900 chr7B 141006058 141007743 1685 False 1013.500000 1044 88.7975 2771 4977 2 chr7B.!!$F1 2206
7 TraesCS5A01G219900 chr7D 175657882 175660940 3058 False 600.333333 1018 89.1680 2771 4977 3 chr7D.!!$F1 2206

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
610 611 0.032540 GGCAGTTGGGTTGAAGCAAG 59.967 55.000 0.00 0.00 0.00 4.01 F
615 616 0.106268 TTGGGTTGAAGCAAGCTCCA 60.106 50.000 8.93 0.00 41.01 3.86 F
766 767 0.106918 TCCAAACCGAACTGCCAGTT 60.107 50.000 10.45 10.45 41.95 3.16 F
1934 3263 0.656259 CGACTAGAACTCCGCATCGA 59.344 55.000 0.00 0.00 0.00 3.59 F
2074 3404 2.103263 AGTGGAGGTGTCACTCAGAAAC 59.897 50.000 2.35 0.00 41.10 2.78 F
3356 4732 3.000727 GGCGCATGTAGTAAGTGTTCTT 58.999 45.455 10.83 0.00 37.65 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1880 3209 0.908910 TGCCGCCTTTCAATCTAGGA 59.091 50.000 0.00 0.0 33.13 2.94 R
2033 3363 1.138859 TCCATCCTTATGCGACACAGG 59.861 52.381 0.00 0.0 0.00 4.00 R
2037 3367 1.138859 CCACTCCATCCTTATGCGACA 59.861 52.381 0.00 0.0 0.00 4.35 R
3180 4555 3.384168 ACATAGCCATAAGAGGTCCACA 58.616 45.455 0.00 0.0 0.00 4.17 R
3924 5371 5.791336 TCAGGTGCATTATAGAGTACTGG 57.209 43.478 0.00 0.0 0.00 4.00 R
4712 9472 1.996191 GGAACTCATCTGACGTTCAGC 59.004 52.381 16.85 0.0 43.95 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.361174 GCGTTTTTGCTAGGCCCA 58.639 55.556 0.00 0.00 0.00 5.36
18 19 1.663173 GCGTTTTTGCTAGGCCCAA 59.337 52.632 0.00 0.00 0.00 4.12
19 20 0.032815 GCGTTTTTGCTAGGCCCAAA 59.967 50.000 0.00 0.00 0.00 3.28
20 21 1.539280 GCGTTTTTGCTAGGCCCAAAA 60.539 47.619 12.66 12.66 39.59 2.44
21 22 2.403259 CGTTTTTGCTAGGCCCAAAAG 58.597 47.619 15.19 3.64 41.52 2.27
22 23 2.035321 CGTTTTTGCTAGGCCCAAAAGA 59.965 45.455 15.19 7.20 41.52 2.52
23 24 3.491792 CGTTTTTGCTAGGCCCAAAAGAA 60.492 43.478 15.19 3.27 41.52 2.52
24 25 4.447290 GTTTTTGCTAGGCCCAAAAGAAA 58.553 39.130 15.19 0.92 41.52 2.52
25 26 4.762289 TTTTGCTAGGCCCAAAAGAAAA 57.238 36.364 12.66 4.61 37.28 2.29
26 27 4.972751 TTTGCTAGGCCCAAAAGAAAAT 57.027 36.364 0.00 0.00 29.93 1.82
27 28 4.535526 TTGCTAGGCCCAAAAGAAAATC 57.464 40.909 0.00 0.00 0.00 2.17
28 29 3.778265 TGCTAGGCCCAAAAGAAAATCT 58.222 40.909 0.00 0.00 0.00 2.40
29 30 4.929479 TGCTAGGCCCAAAAGAAAATCTA 58.071 39.130 0.00 0.00 0.00 1.98
30 31 5.329399 TGCTAGGCCCAAAAGAAAATCTAA 58.671 37.500 0.00 0.00 0.00 2.10
31 32 5.777732 TGCTAGGCCCAAAAGAAAATCTAAA 59.222 36.000 0.00 0.00 0.00 1.85
32 33 6.440328 TGCTAGGCCCAAAAGAAAATCTAAAT 59.560 34.615 0.00 0.00 0.00 1.40
33 34 7.038373 TGCTAGGCCCAAAAGAAAATCTAAATT 60.038 33.333 0.00 0.00 0.00 1.82
34 35 7.824289 GCTAGGCCCAAAAGAAAATCTAAATTT 59.176 33.333 0.00 0.00 36.64 1.82
35 36 9.725019 CTAGGCCCAAAAGAAAATCTAAATTTT 57.275 29.630 0.00 0.00 45.55 1.82
36 37 8.995027 AGGCCCAAAAGAAAATCTAAATTTTT 57.005 26.923 0.00 0.00 43.48 1.94
140 141 9.832445 TTTTGGTAAGTATTAAAATGTTTGCCA 57.168 25.926 6.68 6.68 31.38 4.92
398 399 9.930693 TTGTAAGTTTTTGAATTGGTGTTTAGT 57.069 25.926 0.00 0.00 0.00 2.24
402 403 9.594478 AAGTTTTTGAATTGGTGTTTAGTAAGG 57.406 29.630 0.00 0.00 0.00 2.69
403 404 8.973182 AGTTTTTGAATTGGTGTTTAGTAAGGA 58.027 29.630 0.00 0.00 0.00 3.36
404 405 9.589111 GTTTTTGAATTGGTGTTTAGTAAGGAA 57.411 29.630 0.00 0.00 0.00 3.36
405 406 9.589111 TTTTTGAATTGGTGTTTAGTAAGGAAC 57.411 29.630 0.00 0.00 0.00 3.62
406 407 7.883391 TTGAATTGGTGTTTAGTAAGGAACA 57.117 32.000 0.00 0.00 33.67 3.18
407 408 7.883391 TGAATTGGTGTTTAGTAAGGAACAA 57.117 32.000 0.00 0.00 37.49 2.83
408 409 7.708998 TGAATTGGTGTTTAGTAAGGAACAAC 58.291 34.615 0.00 0.00 42.37 3.32
413 414 6.628919 GTGTTTAGTAAGGAACAACACCAT 57.371 37.500 2.68 0.00 38.29 3.55
414 415 6.665465 GTGTTTAGTAAGGAACAACACCATC 58.335 40.000 2.68 0.00 38.29 3.51
415 416 6.485648 GTGTTTAGTAAGGAACAACACCATCT 59.514 38.462 2.68 0.00 38.29 2.90
416 417 6.708949 TGTTTAGTAAGGAACAACACCATCTC 59.291 38.462 0.00 0.00 33.19 2.75
417 418 4.287766 AGTAAGGAACAACACCATCTCC 57.712 45.455 0.00 0.00 0.00 3.71
418 419 3.650942 AGTAAGGAACAACACCATCTCCA 59.349 43.478 0.00 0.00 0.00 3.86
419 420 2.568623 AGGAACAACACCATCTCCAC 57.431 50.000 0.00 0.00 0.00 4.02
420 421 2.057922 AGGAACAACACCATCTCCACT 58.942 47.619 0.00 0.00 0.00 4.00
421 422 2.039084 AGGAACAACACCATCTCCACTC 59.961 50.000 0.00 0.00 0.00 3.51
422 423 2.427506 GAACAACACCATCTCCACTCC 58.572 52.381 0.00 0.00 0.00 3.85
423 424 0.693049 ACAACACCATCTCCACTCCC 59.307 55.000 0.00 0.00 0.00 4.30
424 425 0.391661 CAACACCATCTCCACTCCCG 60.392 60.000 0.00 0.00 0.00 5.14
425 426 0.836400 AACACCATCTCCACTCCCGT 60.836 55.000 0.00 0.00 0.00 5.28
426 427 1.219124 CACCATCTCCACTCCCGTG 59.781 63.158 0.00 0.00 40.89 4.94
427 428 1.229209 ACCATCTCCACTCCCGTGT 60.229 57.895 0.00 0.00 39.55 4.49
428 429 0.040646 ACCATCTCCACTCCCGTGTA 59.959 55.000 0.00 0.00 39.55 2.90
429 430 0.747255 CCATCTCCACTCCCGTGTAG 59.253 60.000 0.00 0.00 39.55 2.74
430 431 0.103208 CATCTCCACTCCCGTGTAGC 59.897 60.000 0.00 0.00 39.55 3.58
431 432 1.043673 ATCTCCACTCCCGTGTAGCC 61.044 60.000 0.00 0.00 39.55 3.93
432 433 2.682494 TCCACTCCCGTGTAGCCC 60.682 66.667 0.00 0.00 39.55 5.19
433 434 3.782443 CCACTCCCGTGTAGCCCC 61.782 72.222 0.00 0.00 39.55 5.80
434 435 2.683933 CACTCCCGTGTAGCCCCT 60.684 66.667 0.00 0.00 36.39 4.79
435 436 2.363925 ACTCCCGTGTAGCCCCTC 60.364 66.667 0.00 0.00 0.00 4.30
436 437 2.363795 CTCCCGTGTAGCCCCTCA 60.364 66.667 0.00 0.00 0.00 3.86
437 438 1.762460 CTCCCGTGTAGCCCCTCAT 60.762 63.158 0.00 0.00 0.00 2.90
438 439 2.032860 CTCCCGTGTAGCCCCTCATG 62.033 65.000 0.00 0.00 0.00 3.07
439 440 2.367202 CCCGTGTAGCCCCTCATGT 61.367 63.158 0.00 0.00 0.00 3.21
440 441 1.153369 CCGTGTAGCCCCTCATGTG 60.153 63.158 0.00 0.00 0.00 3.21
441 442 1.153369 CGTGTAGCCCCTCATGTGG 60.153 63.158 6.84 6.84 0.00 4.17
447 448 3.698765 CCCCTCATGTGGCAAACC 58.301 61.111 8.36 0.00 0.00 3.27
448 449 2.342650 CCCCTCATGTGGCAAACCG 61.343 63.158 8.36 0.00 39.70 4.44
449 450 2.342650 CCCTCATGTGGCAAACCGG 61.343 63.158 8.36 0.00 39.70 5.28
450 451 2.342650 CCTCATGTGGCAAACCGGG 61.343 63.158 6.32 0.00 39.70 5.73
451 452 2.282816 TCATGTGGCAAACCGGGG 60.283 61.111 6.32 0.00 39.70 5.73
452 453 2.600173 CATGTGGCAAACCGGGGT 60.600 61.111 6.32 0.00 39.70 4.95
453 454 1.303724 CATGTGGCAAACCGGGGTA 60.304 57.895 6.32 0.00 39.70 3.69
454 455 0.896019 CATGTGGCAAACCGGGGTAA 60.896 55.000 6.32 0.00 39.70 2.85
455 456 0.178958 ATGTGGCAAACCGGGGTAAA 60.179 50.000 6.32 0.00 39.70 2.01
456 457 0.396695 TGTGGCAAACCGGGGTAAAA 60.397 50.000 6.32 0.00 39.70 1.52
457 458 0.970640 GTGGCAAACCGGGGTAAAAT 59.029 50.000 6.32 0.00 39.70 1.82
458 459 2.169330 GTGGCAAACCGGGGTAAAATA 58.831 47.619 6.32 0.00 39.70 1.40
459 460 2.164827 GTGGCAAACCGGGGTAAAATAG 59.835 50.000 6.32 0.00 39.70 1.73
460 461 2.225066 TGGCAAACCGGGGTAAAATAGT 60.225 45.455 6.32 0.00 39.70 2.12
461 462 2.424601 GGCAAACCGGGGTAAAATAGTC 59.575 50.000 6.32 0.00 0.00 2.59
462 463 3.083293 GCAAACCGGGGTAAAATAGTCA 58.917 45.455 6.32 0.00 0.00 3.41
463 464 3.128068 GCAAACCGGGGTAAAATAGTCAG 59.872 47.826 6.32 0.00 0.00 3.51
464 465 2.704464 ACCGGGGTAAAATAGTCAGC 57.296 50.000 6.32 0.00 0.00 4.26
465 466 1.134610 ACCGGGGTAAAATAGTCAGCG 60.135 52.381 6.32 0.00 0.00 5.18
466 467 1.578583 CGGGGTAAAATAGTCAGCGG 58.421 55.000 0.00 0.00 0.00 5.52
467 468 1.306148 GGGGTAAAATAGTCAGCGGC 58.694 55.000 0.00 0.00 0.00 6.53
468 469 1.306148 GGGTAAAATAGTCAGCGGCC 58.694 55.000 0.00 0.00 0.00 6.13
469 470 0.935196 GGTAAAATAGTCAGCGGCCG 59.065 55.000 24.05 24.05 0.00 6.13
470 471 0.935196 GTAAAATAGTCAGCGGCCGG 59.065 55.000 29.38 11.74 0.00 6.13
471 472 0.812412 TAAAATAGTCAGCGGCCGGC 60.812 55.000 29.38 21.18 44.05 6.13
472 473 4.547367 AATAGTCAGCGGCCGGCC 62.547 66.667 36.69 36.69 45.17 6.13
484 485 3.499737 CCGGCCATCACAAGCGTC 61.500 66.667 2.24 0.00 0.00 5.19
485 486 3.853330 CGGCCATCACAAGCGTCG 61.853 66.667 2.24 0.00 0.00 5.12
486 487 2.742372 GGCCATCACAAGCGTCGT 60.742 61.111 0.00 0.00 0.00 4.34
487 488 2.740714 GGCCATCACAAGCGTCGTC 61.741 63.158 0.00 0.00 0.00 4.20
488 489 2.740714 GCCATCACAAGCGTCGTCC 61.741 63.158 0.00 0.00 0.00 4.79
489 490 2.100631 CCATCACAAGCGTCGTCCC 61.101 63.158 0.00 0.00 0.00 4.46
490 491 1.374125 CATCACAAGCGTCGTCCCA 60.374 57.895 0.00 0.00 0.00 4.37
491 492 0.740868 CATCACAAGCGTCGTCCCAT 60.741 55.000 0.00 0.00 0.00 4.00
492 493 0.460284 ATCACAAGCGTCGTCCCATC 60.460 55.000 0.00 0.00 0.00 3.51
493 494 1.079819 CACAAGCGTCGTCCCATCT 60.080 57.895 0.00 0.00 0.00 2.90
494 495 0.670546 CACAAGCGTCGTCCCATCTT 60.671 55.000 0.00 0.00 0.00 2.40
495 496 0.389948 ACAAGCGTCGTCCCATCTTC 60.390 55.000 0.00 0.00 0.00 2.87
496 497 0.389817 CAAGCGTCGTCCCATCTTCA 60.390 55.000 0.00 0.00 0.00 3.02
497 498 0.537188 AAGCGTCGTCCCATCTTCAT 59.463 50.000 0.00 0.00 0.00 2.57
498 499 0.537188 AGCGTCGTCCCATCTTCATT 59.463 50.000 0.00 0.00 0.00 2.57
499 500 0.652592 GCGTCGTCCCATCTTCATTG 59.347 55.000 0.00 0.00 0.00 2.82
500 501 0.652592 CGTCGTCCCATCTTCATTGC 59.347 55.000 0.00 0.00 0.00 3.56
501 502 1.017387 GTCGTCCCATCTTCATTGCC 58.983 55.000 0.00 0.00 0.00 4.52
502 503 0.911769 TCGTCCCATCTTCATTGCCT 59.088 50.000 0.00 0.00 0.00 4.75
503 504 1.134401 TCGTCCCATCTTCATTGCCTC 60.134 52.381 0.00 0.00 0.00 4.70
504 505 1.685148 GTCCCATCTTCATTGCCTCC 58.315 55.000 0.00 0.00 0.00 4.30
505 506 1.213926 GTCCCATCTTCATTGCCTCCT 59.786 52.381 0.00 0.00 0.00 3.69
506 507 2.439507 GTCCCATCTTCATTGCCTCCTA 59.560 50.000 0.00 0.00 0.00 2.94
507 508 3.073650 GTCCCATCTTCATTGCCTCCTAT 59.926 47.826 0.00 0.00 0.00 2.57
508 509 3.073503 TCCCATCTTCATTGCCTCCTATG 59.926 47.826 0.00 0.00 0.00 2.23
509 510 2.818432 CCATCTTCATTGCCTCCTATGC 59.182 50.000 0.00 0.00 0.00 3.14
510 511 3.483421 CATCTTCATTGCCTCCTATGCA 58.517 45.455 0.00 0.00 36.84 3.96
511 512 3.204306 TCTTCATTGCCTCCTATGCAG 57.796 47.619 0.00 0.00 40.35 4.41
512 513 2.773661 TCTTCATTGCCTCCTATGCAGA 59.226 45.455 0.00 0.00 40.35 4.26
513 514 3.393609 TCTTCATTGCCTCCTATGCAGAT 59.606 43.478 0.00 0.00 40.35 2.90
514 515 3.136009 TCATTGCCTCCTATGCAGATG 57.864 47.619 0.00 0.00 40.35 2.90
515 516 1.540267 CATTGCCTCCTATGCAGATGC 59.460 52.381 0.00 0.00 40.35 3.91
516 517 0.841961 TTGCCTCCTATGCAGATGCT 59.158 50.000 6.35 0.00 40.35 3.79
517 518 0.841961 TGCCTCCTATGCAGATGCTT 59.158 50.000 6.35 2.33 42.66 3.91
518 519 1.202734 TGCCTCCTATGCAGATGCTTC 60.203 52.381 6.35 0.00 42.66 3.86
519 520 1.793258 CCTCCTATGCAGATGCTTCG 58.207 55.000 6.35 0.00 42.66 3.79
520 521 1.607509 CCTCCTATGCAGATGCTTCGG 60.608 57.143 6.35 5.72 42.66 4.30
521 522 0.394192 TCCTATGCAGATGCTTCGGG 59.606 55.000 6.35 6.38 42.66 5.14
522 523 0.107456 CCTATGCAGATGCTTCGGGT 59.893 55.000 6.35 0.00 42.66 5.28
523 524 1.475751 CCTATGCAGATGCTTCGGGTT 60.476 52.381 6.35 0.00 42.66 4.11
524 525 1.600957 CTATGCAGATGCTTCGGGTTG 59.399 52.381 6.35 0.00 42.66 3.77
525 526 1.660560 ATGCAGATGCTTCGGGTTGC 61.661 55.000 6.35 3.72 42.66 4.17
526 527 3.056313 GCAGATGCTTCGGGTTGCC 62.056 63.158 0.00 0.00 38.21 4.52
527 528 1.675310 CAGATGCTTCGGGTTGCCA 60.675 57.895 0.00 0.00 0.00 4.92
528 529 1.033746 CAGATGCTTCGGGTTGCCAT 61.034 55.000 0.00 0.00 0.00 4.40
529 530 1.033746 AGATGCTTCGGGTTGCCATG 61.034 55.000 0.00 0.00 0.00 3.66
530 531 2.008268 GATGCTTCGGGTTGCCATGG 62.008 60.000 7.63 7.63 0.00 3.66
531 532 3.451894 GCTTCGGGTTGCCATGGG 61.452 66.667 15.13 0.00 0.00 4.00
532 533 2.755469 CTTCGGGTTGCCATGGGG 60.755 66.667 15.13 0.00 37.18 4.96
542 543 4.387343 CCATGGGGCTGCAGGGTT 62.387 66.667 17.12 0.00 0.00 4.11
543 544 3.072468 CATGGGGCTGCAGGGTTG 61.072 66.667 17.12 0.00 0.00 3.77
544 545 3.267233 ATGGGGCTGCAGGGTTGA 61.267 61.111 17.12 0.00 0.00 3.18
545 546 2.629498 ATGGGGCTGCAGGGTTGAT 61.629 57.895 17.12 0.00 0.00 2.57
546 547 1.288508 ATGGGGCTGCAGGGTTGATA 61.289 55.000 17.12 0.00 0.00 2.15
547 548 1.306296 GGGGCTGCAGGGTTGATAA 59.694 57.895 17.12 0.00 0.00 1.75
548 549 0.324275 GGGGCTGCAGGGTTGATAAA 60.324 55.000 17.12 0.00 0.00 1.40
549 550 1.555967 GGGCTGCAGGGTTGATAAAA 58.444 50.000 17.12 0.00 0.00 1.52
550 551 1.204704 GGGCTGCAGGGTTGATAAAAC 59.795 52.381 17.12 0.00 0.00 2.43
551 552 2.171003 GGCTGCAGGGTTGATAAAACT 58.829 47.619 17.12 0.00 0.00 2.66
552 553 2.562738 GGCTGCAGGGTTGATAAAACTT 59.437 45.455 17.12 0.00 0.00 2.66
553 554 3.006859 GGCTGCAGGGTTGATAAAACTTT 59.993 43.478 17.12 0.00 0.00 2.66
554 555 4.503123 GGCTGCAGGGTTGATAAAACTTTT 60.503 41.667 17.12 0.00 0.00 2.27
555 556 5.279256 GGCTGCAGGGTTGATAAAACTTTTA 60.279 40.000 17.12 0.00 0.00 1.52
556 557 6.398095 GCTGCAGGGTTGATAAAACTTTTAT 58.602 36.000 17.12 6.49 0.00 1.40
557 558 7.363443 GGCTGCAGGGTTGATAAAACTTTTATA 60.363 37.037 17.12 0.00 0.00 0.98
558 559 8.197439 GCTGCAGGGTTGATAAAACTTTTATAT 58.803 33.333 17.12 0.00 0.00 0.86
559 560 9.520204 CTGCAGGGTTGATAAAACTTTTATATG 57.480 33.333 5.57 2.53 0.00 1.78
560 561 7.978975 TGCAGGGTTGATAAAACTTTTATATGC 59.021 33.333 6.73 10.04 0.00 3.14
561 562 7.167468 GCAGGGTTGATAAAACTTTTATATGCG 59.833 37.037 6.73 0.00 0.00 4.73
562 563 8.188139 CAGGGTTGATAAAACTTTTATATGCGT 58.812 33.333 6.73 0.00 0.00 5.24
563 564 8.745590 AGGGTTGATAAAACTTTTATATGCGTT 58.254 29.630 6.73 0.00 0.00 4.84
564 565 8.803799 GGGTTGATAAAACTTTTATATGCGTTG 58.196 33.333 6.73 0.00 0.00 4.10
565 566 8.803799 GGTTGATAAAACTTTTATATGCGTTGG 58.196 33.333 6.73 0.00 0.00 3.77
566 567 7.979115 TGATAAAACTTTTATATGCGTTGGC 57.021 32.000 6.73 0.00 40.52 4.52
601 602 3.806949 TTTGAGATTAGGCAGTTGGGT 57.193 42.857 0.00 0.00 0.00 4.51
602 603 3.806949 TTGAGATTAGGCAGTTGGGTT 57.193 42.857 0.00 0.00 0.00 4.11
603 604 3.071874 TGAGATTAGGCAGTTGGGTTG 57.928 47.619 0.00 0.00 0.00 3.77
604 605 2.642311 TGAGATTAGGCAGTTGGGTTGA 59.358 45.455 0.00 0.00 0.00 3.18
605 606 3.073798 TGAGATTAGGCAGTTGGGTTGAA 59.926 43.478 0.00 0.00 0.00 2.69
606 607 3.690460 AGATTAGGCAGTTGGGTTGAAG 58.310 45.455 0.00 0.00 0.00 3.02
607 608 1.616159 TTAGGCAGTTGGGTTGAAGC 58.384 50.000 0.00 0.00 0.00 3.86
608 609 0.476338 TAGGCAGTTGGGTTGAAGCA 59.524 50.000 0.00 0.00 0.00 3.91
609 610 0.396974 AGGCAGTTGGGTTGAAGCAA 60.397 50.000 0.00 0.00 0.00 3.91
610 611 0.032540 GGCAGTTGGGTTGAAGCAAG 59.967 55.000 0.00 0.00 0.00 4.01
611 612 0.598419 GCAGTTGGGTTGAAGCAAGC 60.598 55.000 0.00 0.00 40.58 4.01
612 613 1.035139 CAGTTGGGTTGAAGCAAGCT 58.965 50.000 8.93 0.00 41.01 3.74
613 614 1.000938 CAGTTGGGTTGAAGCAAGCTC 60.001 52.381 8.93 1.43 41.01 4.09
614 615 0.315251 GTTGGGTTGAAGCAAGCTCC 59.685 55.000 8.93 0.00 41.01 4.70
615 616 0.106268 TTGGGTTGAAGCAAGCTCCA 60.106 50.000 8.93 0.00 41.01 3.86
616 617 0.106268 TGGGTTGAAGCAAGCTCCAA 60.106 50.000 8.93 0.00 41.01 3.53
617 618 1.039856 GGGTTGAAGCAAGCTCCAAA 58.960 50.000 0.00 0.00 41.01 3.28
618 619 1.000171 GGGTTGAAGCAAGCTCCAAAG 60.000 52.381 0.00 0.00 41.01 2.77
619 620 1.000171 GGTTGAAGCAAGCTCCAAAGG 60.000 52.381 0.00 0.00 38.60 3.11
620 621 1.956477 GTTGAAGCAAGCTCCAAAGGA 59.044 47.619 0.00 0.00 0.00 3.36
631 632 2.924421 CTCCAAAGGAGGCCTTCATAC 58.076 52.381 15.31 0.00 43.92 2.39
632 633 2.507471 CTCCAAAGGAGGCCTTCATACT 59.493 50.000 15.31 1.25 43.92 2.12
633 634 2.505819 TCCAAAGGAGGCCTTCATACTC 59.494 50.000 15.31 0.00 43.92 2.59
634 635 2.239654 CCAAAGGAGGCCTTCATACTCA 59.760 50.000 15.31 0.00 43.92 3.41
635 636 3.274288 CAAAGGAGGCCTTCATACTCAC 58.726 50.000 15.31 0.00 43.92 3.51
636 637 2.559381 AGGAGGCCTTCATACTCACT 57.441 50.000 15.31 0.00 32.98 3.41
637 638 2.114616 AGGAGGCCTTCATACTCACTG 58.885 52.381 15.31 0.00 32.98 3.66
638 639 1.834263 GGAGGCCTTCATACTCACTGT 59.166 52.381 6.77 0.00 32.98 3.55
639 640 2.237392 GGAGGCCTTCATACTCACTGTT 59.763 50.000 6.77 0.00 32.98 3.16
640 641 3.526534 GAGGCCTTCATACTCACTGTTC 58.473 50.000 6.77 0.00 0.00 3.18
641 642 2.906389 AGGCCTTCATACTCACTGTTCA 59.094 45.455 0.00 0.00 0.00 3.18
642 643 3.003480 GGCCTTCATACTCACTGTTCAC 58.997 50.000 0.00 0.00 0.00 3.18
643 644 3.557054 GGCCTTCATACTCACTGTTCACA 60.557 47.826 0.00 0.00 0.00 3.58
644 645 4.256920 GCCTTCATACTCACTGTTCACAT 58.743 43.478 0.00 0.00 0.00 3.21
645 646 5.419542 GCCTTCATACTCACTGTTCACATA 58.580 41.667 0.00 0.00 0.00 2.29
646 647 6.051717 GCCTTCATACTCACTGTTCACATAT 58.948 40.000 0.00 0.00 0.00 1.78
647 648 7.210174 GCCTTCATACTCACTGTTCACATATA 58.790 38.462 0.00 0.00 0.00 0.86
648 649 7.383572 GCCTTCATACTCACTGTTCACATATAG 59.616 40.741 0.00 0.00 0.00 1.31
649 650 8.633561 CCTTCATACTCACTGTTCACATATAGA 58.366 37.037 0.00 0.00 0.00 1.98
650 651 9.676195 CTTCATACTCACTGTTCACATATAGAG 57.324 37.037 0.00 0.00 0.00 2.43
651 652 8.171164 TCATACTCACTGTTCACATATAGAGG 57.829 38.462 0.00 0.00 0.00 3.69
652 653 7.780271 TCATACTCACTGTTCACATATAGAGGT 59.220 37.037 0.00 0.00 0.00 3.85
653 654 6.859112 ACTCACTGTTCACATATAGAGGTT 57.141 37.500 0.00 0.00 0.00 3.50
654 655 6.634805 ACTCACTGTTCACATATAGAGGTTG 58.365 40.000 0.00 0.00 0.00 3.77
655 656 5.977635 TCACTGTTCACATATAGAGGTTGG 58.022 41.667 0.00 0.00 0.00 3.77
656 657 5.104941 TCACTGTTCACATATAGAGGTTGGG 60.105 44.000 0.00 0.00 0.00 4.12
657 658 5.030147 ACTGTTCACATATAGAGGTTGGGA 58.970 41.667 0.00 0.00 0.00 4.37
658 659 5.129485 ACTGTTCACATATAGAGGTTGGGAG 59.871 44.000 0.00 0.00 0.00 4.30
659 660 4.408921 TGTTCACATATAGAGGTTGGGAGG 59.591 45.833 0.00 0.00 0.00 4.30
660 661 2.972713 TCACATATAGAGGTTGGGAGGC 59.027 50.000 0.00 0.00 0.00 4.70
661 662 2.039084 CACATATAGAGGTTGGGAGGCC 59.961 54.545 0.00 0.00 0.00 5.19
662 663 2.338809 CATATAGAGGTTGGGAGGCCA 58.661 52.381 5.01 0.00 0.00 5.36
663 664 1.802553 TATAGAGGTTGGGAGGCCAC 58.197 55.000 5.01 0.00 0.00 5.01
664 665 1.338136 ATAGAGGTTGGGAGGCCACG 61.338 60.000 5.01 0.00 0.00 4.94
679 680 2.600388 CACGCGTGGAGAAAGTTCA 58.400 52.632 31.15 0.00 0.00 3.18
680 681 0.934496 CACGCGTGGAGAAAGTTCAA 59.066 50.000 31.15 0.00 0.00 2.69
681 682 1.329292 CACGCGTGGAGAAAGTTCAAA 59.671 47.619 31.15 0.00 0.00 2.69
682 683 2.011222 ACGCGTGGAGAAAGTTCAAAA 58.989 42.857 12.93 0.00 0.00 2.44
683 684 2.420722 ACGCGTGGAGAAAGTTCAAAAA 59.579 40.909 12.93 0.00 0.00 1.94
704 705 6.633500 AAAAAGTGACGATTGAAAGATGGA 57.367 33.333 0.00 0.00 0.00 3.41
705 706 6.824305 AAAAGTGACGATTGAAAGATGGAT 57.176 33.333 0.00 0.00 0.00 3.41
706 707 5.808042 AAGTGACGATTGAAAGATGGATG 57.192 39.130 0.00 0.00 0.00 3.51
707 708 5.089970 AGTGACGATTGAAAGATGGATGA 57.910 39.130 0.00 0.00 0.00 2.92
708 709 4.872691 AGTGACGATTGAAAGATGGATGAC 59.127 41.667 0.00 0.00 0.00 3.06
709 710 3.865164 TGACGATTGAAAGATGGATGACG 59.135 43.478 0.00 0.00 0.00 4.35
710 711 4.112634 GACGATTGAAAGATGGATGACGA 58.887 43.478 0.00 0.00 0.00 4.20
711 712 4.697514 ACGATTGAAAGATGGATGACGAT 58.302 39.130 0.00 0.00 0.00 3.73
712 713 5.118990 ACGATTGAAAGATGGATGACGATT 58.881 37.500 0.00 0.00 0.00 3.34
713 714 5.586243 ACGATTGAAAGATGGATGACGATTT 59.414 36.000 0.00 0.00 0.00 2.17
714 715 6.094048 ACGATTGAAAGATGGATGACGATTTT 59.906 34.615 0.00 0.00 0.00 1.82
715 716 6.412943 CGATTGAAAGATGGATGACGATTTTG 59.587 38.462 0.00 0.00 0.00 2.44
716 717 6.573664 TTGAAAGATGGATGACGATTTTGT 57.426 33.333 0.00 0.00 0.00 2.83
717 718 6.573664 TGAAAGATGGATGACGATTTTGTT 57.426 33.333 0.00 0.00 0.00 2.83
718 719 7.680442 TGAAAGATGGATGACGATTTTGTTA 57.320 32.000 0.00 0.00 0.00 2.41
719 720 7.751732 TGAAAGATGGATGACGATTTTGTTAG 58.248 34.615 0.00 0.00 0.00 2.34
720 721 7.606073 TGAAAGATGGATGACGATTTTGTTAGA 59.394 33.333 0.00 0.00 0.00 2.10
721 722 6.910536 AGATGGATGACGATTTTGTTAGAC 57.089 37.500 0.00 0.00 0.00 2.59
722 723 6.644347 AGATGGATGACGATTTTGTTAGACT 58.356 36.000 0.00 0.00 0.00 3.24
723 724 7.106239 AGATGGATGACGATTTTGTTAGACTT 58.894 34.615 0.00 0.00 0.00 3.01
724 725 7.607991 AGATGGATGACGATTTTGTTAGACTTT 59.392 33.333 0.00 0.00 0.00 2.66
725 726 7.504924 TGGATGACGATTTTGTTAGACTTTT 57.495 32.000 0.00 0.00 0.00 2.27
726 727 7.936584 TGGATGACGATTTTGTTAGACTTTTT 58.063 30.769 0.00 0.00 0.00 1.94
749 750 7.986085 TTTAGTCGGTACTATATGGTACTCC 57.014 40.000 23.66 11.28 41.07 3.85
750 751 5.573380 AGTCGGTACTATATGGTACTCCA 57.427 43.478 23.66 9.40 40.38 3.86
751 752 5.945310 AGTCGGTACTATATGGTACTCCAA 58.055 41.667 23.66 8.63 39.84 3.53
752 753 6.367983 AGTCGGTACTATATGGTACTCCAAA 58.632 40.000 23.66 7.23 39.84 3.28
753 754 6.264067 AGTCGGTACTATATGGTACTCCAAAC 59.736 42.308 23.66 15.69 39.84 2.93
754 755 8.607562 AGTCGGTACTATATGGTACTCCAAACC 61.608 44.444 23.66 11.01 39.84 3.27
760 761 2.536761 TGGTACTCCAAACCGAACTG 57.463 50.000 0.00 0.00 41.25 3.16
761 762 1.154197 GGTACTCCAAACCGAACTGC 58.846 55.000 0.00 0.00 0.00 4.40
762 763 1.154197 GTACTCCAAACCGAACTGCC 58.846 55.000 0.00 0.00 0.00 4.85
763 764 0.759959 TACTCCAAACCGAACTGCCA 59.240 50.000 0.00 0.00 0.00 4.92
764 765 0.535102 ACTCCAAACCGAACTGCCAG 60.535 55.000 0.00 0.00 0.00 4.85
765 766 0.535102 CTCCAAACCGAACTGCCAGT 60.535 55.000 0.00 0.00 0.00 4.00
766 767 0.106918 TCCAAACCGAACTGCCAGTT 60.107 50.000 10.45 10.45 41.95 3.16
767 768 0.744281 CCAAACCGAACTGCCAGTTT 59.256 50.000 12.09 0.00 38.80 2.66
768 769 1.535860 CCAAACCGAACTGCCAGTTTG 60.536 52.381 16.54 16.54 45.44 2.93
773 774 1.238439 CGAACTGCCAGTTTGGATGT 58.762 50.000 15.82 0.00 40.96 3.06
774 775 2.422597 CGAACTGCCAGTTTGGATGTA 58.577 47.619 15.82 0.00 40.96 2.29
775 776 3.009723 CGAACTGCCAGTTTGGATGTAT 58.990 45.455 15.82 0.00 40.96 2.29
776 777 4.188462 CGAACTGCCAGTTTGGATGTATA 58.812 43.478 15.82 0.00 40.96 1.47
777 778 4.816385 CGAACTGCCAGTTTGGATGTATAT 59.184 41.667 15.82 0.00 40.96 0.86
778 779 5.989168 CGAACTGCCAGTTTGGATGTATATA 59.011 40.000 15.82 0.00 40.96 0.86
779 780 6.650807 CGAACTGCCAGTTTGGATGTATATAT 59.349 38.462 15.82 0.00 40.96 0.86
780 781 7.360353 CGAACTGCCAGTTTGGATGTATATATG 60.360 40.741 15.82 0.00 40.96 1.78
781 782 6.240894 ACTGCCAGTTTGGATGTATATATGG 58.759 40.000 0.00 0.00 40.96 2.74
782 783 5.567138 GCCAGTTTGGATGTATATATGGC 57.433 43.478 0.00 3.20 40.96 4.40
783 784 5.256474 GCCAGTTTGGATGTATATATGGCT 58.744 41.667 9.84 0.00 45.60 4.75
784 785 5.124457 GCCAGTTTGGATGTATATATGGCTG 59.876 44.000 9.84 0.00 45.60 4.85
785 786 6.475504 CCAGTTTGGATGTATATATGGCTGA 58.524 40.000 0.00 0.00 40.96 4.26
786 787 7.114754 CCAGTTTGGATGTATATATGGCTGAT 58.885 38.462 0.00 0.00 40.96 2.90
787 788 7.613022 CCAGTTTGGATGTATATATGGCTGATT 59.387 37.037 0.00 0.00 40.96 2.57
788 789 8.671921 CAGTTTGGATGTATATATGGCTGATTC 58.328 37.037 0.00 0.00 0.00 2.52
789 790 8.609483 AGTTTGGATGTATATATGGCTGATTCT 58.391 33.333 0.00 0.00 0.00 2.40
790 791 9.236006 GTTTGGATGTATATATGGCTGATTCTT 57.764 33.333 0.00 0.00 0.00 2.52
791 792 9.453572 TTTGGATGTATATATGGCTGATTCTTC 57.546 33.333 0.00 0.00 0.00 2.87
792 793 8.384693 TGGATGTATATATGGCTGATTCTTCT 57.615 34.615 0.00 0.00 0.00 2.85
793 794 9.492730 TGGATGTATATATGGCTGATTCTTCTA 57.507 33.333 0.00 0.00 0.00 2.10
794 795 9.979578 GGATGTATATATGGCTGATTCTTCTAG 57.020 37.037 0.00 0.00 0.00 2.43
795 796 9.474920 GATGTATATATGGCTGATTCTTCTAGC 57.525 37.037 0.00 0.00 36.74 3.42
796 797 8.366359 TGTATATATGGCTGATTCTTCTAGCA 57.634 34.615 0.00 0.00 39.15 3.49
797 798 8.985922 TGTATATATGGCTGATTCTTCTAGCAT 58.014 33.333 0.00 0.00 39.15 3.79
817 818 6.820470 GCATAGAGTTGCTCTTAACTACTG 57.180 41.667 3.87 0.00 41.50 2.74
818 819 6.334202 GCATAGAGTTGCTCTTAACTACTGT 58.666 40.000 3.87 0.00 41.50 3.55
819 820 7.481642 GCATAGAGTTGCTCTTAACTACTGTA 58.518 38.462 3.87 0.00 41.50 2.74
820 821 8.138712 GCATAGAGTTGCTCTTAACTACTGTAT 58.861 37.037 3.87 0.00 41.50 2.29
823 824 8.123639 AGAGTTGCTCTTAACTACTGTATTGA 57.876 34.615 0.00 0.00 40.78 2.57
824 825 8.585881 AGAGTTGCTCTTAACTACTGTATTGAA 58.414 33.333 0.00 0.00 40.78 2.69
825 826 9.204570 GAGTTGCTCTTAACTACTGTATTGAAA 57.795 33.333 0.00 0.00 40.78 2.69
826 827 9.555727 AGTTGCTCTTAACTACTGTATTGAAAA 57.444 29.630 0.00 0.00 39.03 2.29
829 830 9.332502 TGCTCTTAACTACTGTATTGAAAAACA 57.667 29.630 0.00 0.00 0.00 2.83
966 971 1.533033 TGTCTTGACCGGCCTCTGA 60.533 57.895 0.00 0.00 0.00 3.27
967 972 1.216710 GTCTTGACCGGCCTCTGAG 59.783 63.158 0.00 0.00 0.00 3.35
968 973 1.076727 TCTTGACCGGCCTCTGAGA 59.923 57.895 6.17 0.00 0.00 3.27
969 974 0.967887 TCTTGACCGGCCTCTGAGAG 60.968 60.000 6.17 1.57 0.00 3.20
1108 1150 2.616376 CGTGGATCCAAGTGTCAAACAA 59.384 45.455 18.20 0.00 0.00 2.83
1110 1152 4.613622 CGTGGATCCAAGTGTCAAACAATC 60.614 45.833 18.20 0.00 0.00 2.67
1131 1173 2.683933 TCTCCTTCCTCACCGGCC 60.684 66.667 0.00 0.00 0.00 6.13
1296 1338 3.764466 CCTCCACGAAGCTCCGCT 61.764 66.667 0.00 0.00 42.56 5.52
1298 1345 2.989253 TCCACGAAGCTCCGCTGA 60.989 61.111 0.00 0.00 39.62 4.26
1339 1386 4.864916 TCTCATATTGCTTCGCTTTGAC 57.135 40.909 0.00 0.00 0.00 3.18
1483 1530 1.475751 CCAGGTGCTGTTCTGTCACTT 60.476 52.381 0.00 0.00 0.00 3.16
1773 3102 3.701040 AGCAAAGGTGTGATCTGTTGTTT 59.299 39.130 0.00 0.00 0.00 2.83
1827 3156 9.725019 AGATAGTTGTTGTTCTGAATGTTATCA 57.275 29.630 0.00 0.00 0.00 2.15
1836 3165 9.631257 TTGTTCTGAATGTTATCATGGATATGT 57.369 29.630 0.00 0.00 35.73 2.29
1865 3194 6.376864 TGAACCAGTGAATTCTTCTGTTTTCA 59.623 34.615 22.66 22.66 32.28 2.69
1880 3209 4.792068 TGTTTTCATGGAAGGTGAGAGTT 58.208 39.130 0.00 0.00 0.00 3.01
1895 3224 4.873259 GTGAGAGTTCCTAGATTGAAAGGC 59.127 45.833 0.00 0.00 32.55 4.35
1934 3263 0.656259 CGACTAGAACTCCGCATCGA 59.344 55.000 0.00 0.00 0.00 3.59
1970 3299 4.262506 GGACTCAGTGTAGCAAAGGTAAGT 60.263 45.833 0.00 0.00 0.00 2.24
2037 3367 8.686739 ATTGTCCCTAATTATCTATAGCCTGT 57.313 34.615 0.00 0.00 0.00 4.00
2074 3404 2.103263 AGTGGAGGTGTCACTCAGAAAC 59.897 50.000 2.35 0.00 41.10 2.78
2093 3423 7.384932 TCAGAAACAGCACAATGTATATATCCG 59.615 37.037 0.00 0.00 31.70 4.18
2394 3724 3.607741 AGAACTGAATCACATGCCTCTG 58.392 45.455 0.00 0.00 0.00 3.35
2395 3725 3.008813 AGAACTGAATCACATGCCTCTGT 59.991 43.478 0.00 0.00 0.00 3.41
2396 3726 4.223700 AGAACTGAATCACATGCCTCTGTA 59.776 41.667 0.00 0.00 0.00 2.74
2397 3727 4.767578 ACTGAATCACATGCCTCTGTAT 57.232 40.909 0.00 0.00 0.00 2.29
2398 3728 5.876651 ACTGAATCACATGCCTCTGTATA 57.123 39.130 0.00 0.00 0.00 1.47
2399 3729 6.239217 ACTGAATCACATGCCTCTGTATAA 57.761 37.500 0.00 0.00 0.00 0.98
2480 3810 6.095440 GCCTATTTTGGTCATTCTTGCTTAGA 59.905 38.462 0.00 0.00 0.00 2.10
2625 3955 5.913137 CATTAAGTGCTTATGTTCCCCAA 57.087 39.130 0.00 0.00 0.00 4.12
3237 4612 5.874093 ACTCCTGGATTATTTGCCATCTAG 58.126 41.667 0.00 0.00 32.89 2.43
3329 4705 6.041296 AGCACTTCATTTCTTCACTTTCCAAT 59.959 34.615 0.00 0.00 0.00 3.16
3356 4732 3.000727 GGCGCATGTAGTAAGTGTTCTT 58.999 45.455 10.83 0.00 37.65 2.52
3455 4902 5.755813 CCAGTTTCTGACTTGAAGTTCATG 58.244 41.667 15.29 15.29 36.10 3.07
3683 5130 3.244284 ACTCCTGCTCGATCGTAGTCTAT 60.244 47.826 15.94 0.00 0.00 1.98
4081 5529 5.652994 TGTTGGCTTGAAAACTTAAGTGT 57.347 34.783 9.34 0.00 0.00 3.55
4115 5563 9.190317 GTAGAAAGTTCAAAAGGGGATTCATAT 57.810 33.333 0.00 0.00 0.00 1.78
4184 5637 2.146342 GCTAACAGCTTGAGCAAGACA 58.854 47.619 14.04 0.00 45.16 3.41
4197 5650 5.610398 TGAGCAAGACAGTTATCTTCAACA 58.390 37.500 0.00 0.00 36.78 3.33
4426 7827 8.116651 TGTAAAAACATGTGCCAGTTACATAT 57.883 30.769 0.00 0.00 36.67 1.78
4551 8149 4.716784 TGAGCAATACAGGAGATTGGTAGT 59.283 41.667 0.45 0.00 43.23 2.73
4712 9472 6.599244 TGAGATAACAGGGAGCTAAAAATGTG 59.401 38.462 0.00 0.00 0.00 3.21
4719 9481 3.492313 GGAGCTAAAAATGTGCTGAACG 58.508 45.455 0.00 0.00 37.16 3.95
4737 9499 4.279922 TGAACGTCAGATGAGTTCCACTTA 59.720 41.667 15.93 2.77 42.40 2.24
4782 9544 0.951558 CCCCTGAAAACGACAGTTGG 59.048 55.000 0.00 0.00 41.05 3.77
4843 9605 5.808030 GTCTCAGATACCACTTCTAAACTGC 59.192 44.000 0.00 0.00 0.00 4.40
4866 9628 4.431416 TTGTTCTTCTAGCCCACTTTCA 57.569 40.909 0.00 0.00 0.00 2.69
4867 9629 3.740115 TGTTCTTCTAGCCCACTTTCAC 58.260 45.455 0.00 0.00 0.00 3.18
4874 9636 2.846532 CCCACTTTCACCCTGGCT 59.153 61.111 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.032815 TTTGGGCCTAGCAAAAACGC 59.967 50.000 4.53 0.00 0.00 4.84
1 2 2.035321 TCTTTTGGGCCTAGCAAAAACG 59.965 45.455 16.14 8.45 0.00 3.60
2 3 3.744238 TCTTTTGGGCCTAGCAAAAAC 57.256 42.857 16.14 0.00 0.00 2.43
3 4 4.762289 TTTCTTTTGGGCCTAGCAAAAA 57.238 36.364 16.14 1.54 0.00 1.94
4 5 4.762289 TTTTCTTTTGGGCCTAGCAAAA 57.238 36.364 15.03 15.03 0.00 2.44
5 6 4.592778 AGATTTTCTTTTGGGCCTAGCAAA 59.407 37.500 4.53 1.50 0.00 3.68
6 7 4.159557 AGATTTTCTTTTGGGCCTAGCAA 58.840 39.130 4.53 0.00 0.00 3.91
7 8 3.778265 AGATTTTCTTTTGGGCCTAGCA 58.222 40.909 4.53 0.00 0.00 3.49
8 9 5.914898 TTAGATTTTCTTTTGGGCCTAGC 57.085 39.130 4.53 0.00 0.00 3.42
9 10 9.725019 AAAATTTAGATTTTCTTTTGGGCCTAG 57.275 29.630 4.53 0.00 40.54 3.02
11 12 8.995027 AAAAATTTAGATTTTCTTTTGGGCCT 57.005 26.923 4.53 0.00 42.97 5.19
114 115 9.832445 TGGCAAACATTTTAATACTTACCAAAA 57.168 25.926 0.00 0.00 0.00 2.44
372 373 9.930693 ACTAAACACCAATTCAAAAACTTACAA 57.069 25.926 0.00 0.00 0.00 2.41
376 377 9.594478 CCTTACTAAACACCAATTCAAAAACTT 57.406 29.630 0.00 0.00 0.00 2.66
377 378 8.973182 TCCTTACTAAACACCAATTCAAAAACT 58.027 29.630 0.00 0.00 0.00 2.66
378 379 9.589111 TTCCTTACTAAACACCAATTCAAAAAC 57.411 29.630 0.00 0.00 0.00 2.43
379 380 9.589111 GTTCCTTACTAAACACCAATTCAAAAA 57.411 29.630 0.00 0.00 0.00 1.94
380 381 8.750298 TGTTCCTTACTAAACACCAATTCAAAA 58.250 29.630 0.00 0.00 30.73 2.44
381 382 8.294954 TGTTCCTTACTAAACACCAATTCAAA 57.705 30.769 0.00 0.00 30.73 2.69
382 383 7.883391 TGTTCCTTACTAAACACCAATTCAA 57.117 32.000 0.00 0.00 30.73 2.69
383 384 7.339721 TGTTGTTCCTTACTAAACACCAATTCA 59.660 33.333 0.00 0.00 35.24 2.57
384 385 7.646526 GTGTTGTTCCTTACTAAACACCAATTC 59.353 37.037 5.83 0.00 35.24 2.17
385 386 7.417003 GGTGTTGTTCCTTACTAAACACCAATT 60.417 37.037 24.02 0.00 43.09 2.32
386 387 6.040054 GGTGTTGTTCCTTACTAAACACCAAT 59.960 38.462 24.02 0.00 43.09 3.16
387 388 5.357596 GGTGTTGTTCCTTACTAAACACCAA 59.642 40.000 24.02 0.00 43.09 3.67
388 389 4.883006 GGTGTTGTTCCTTACTAAACACCA 59.117 41.667 24.02 3.21 43.09 4.17
389 390 4.883006 TGGTGTTGTTCCTTACTAAACACC 59.117 41.667 22.82 22.82 43.66 4.16
390 391 6.485648 AGATGGTGTTGTTCCTTACTAAACAC 59.514 38.462 8.14 8.14 35.24 3.32
391 392 6.597562 AGATGGTGTTGTTCCTTACTAAACA 58.402 36.000 0.00 0.00 33.74 2.83
392 393 6.148976 GGAGATGGTGTTGTTCCTTACTAAAC 59.851 42.308 0.00 0.00 0.00 2.01
393 394 6.183361 TGGAGATGGTGTTGTTCCTTACTAAA 60.183 38.462 0.00 0.00 0.00 1.85
394 395 5.308497 TGGAGATGGTGTTGTTCCTTACTAA 59.692 40.000 0.00 0.00 0.00 2.24
395 396 4.841813 TGGAGATGGTGTTGTTCCTTACTA 59.158 41.667 0.00 0.00 0.00 1.82
396 397 3.650942 TGGAGATGGTGTTGTTCCTTACT 59.349 43.478 0.00 0.00 0.00 2.24
397 398 3.751698 GTGGAGATGGTGTTGTTCCTTAC 59.248 47.826 0.00 0.00 0.00 2.34
398 399 3.650942 AGTGGAGATGGTGTTGTTCCTTA 59.349 43.478 0.00 0.00 0.00 2.69
399 400 2.443255 AGTGGAGATGGTGTTGTTCCTT 59.557 45.455 0.00 0.00 0.00 3.36
400 401 2.039084 GAGTGGAGATGGTGTTGTTCCT 59.961 50.000 0.00 0.00 0.00 3.36
401 402 2.427506 GAGTGGAGATGGTGTTGTTCC 58.572 52.381 0.00 0.00 0.00 3.62
402 403 2.427506 GGAGTGGAGATGGTGTTGTTC 58.572 52.381 0.00 0.00 0.00 3.18
403 404 1.073923 GGGAGTGGAGATGGTGTTGTT 59.926 52.381 0.00 0.00 0.00 2.83
404 405 0.693049 GGGAGTGGAGATGGTGTTGT 59.307 55.000 0.00 0.00 0.00 3.32
405 406 0.391661 CGGGAGTGGAGATGGTGTTG 60.392 60.000 0.00 0.00 0.00 3.33
406 407 0.836400 ACGGGAGTGGAGATGGTGTT 60.836 55.000 0.00 0.00 44.82 3.32
407 408 1.229209 ACGGGAGTGGAGATGGTGT 60.229 57.895 0.00 0.00 44.82 4.16
408 409 3.713650 ACGGGAGTGGAGATGGTG 58.286 61.111 0.00 0.00 44.82 4.17
419 420 1.762460 ATGAGGGGCTACACGGGAG 60.762 63.158 0.00 0.00 0.00 4.30
420 421 2.063979 CATGAGGGGCTACACGGGA 61.064 63.158 0.00 0.00 0.00 5.14
421 422 2.367202 ACATGAGGGGCTACACGGG 61.367 63.158 0.00 0.00 0.00 5.28
422 423 1.153369 CACATGAGGGGCTACACGG 60.153 63.158 0.00 0.00 0.00 4.94
423 424 1.153369 CCACATGAGGGGCTACACG 60.153 63.158 0.00 0.00 0.00 4.49
424 425 1.452108 GCCACATGAGGGGCTACAC 60.452 63.158 11.42 0.00 46.74 2.90
425 426 2.998097 GCCACATGAGGGGCTACA 59.002 61.111 11.42 0.00 46.74 2.74
430 431 2.342650 CGGTTTGCCACATGAGGGG 61.343 63.158 11.42 4.99 34.09 4.79
431 432 2.342650 CCGGTTTGCCACATGAGGG 61.343 63.158 11.42 7.51 34.09 4.30
432 433 2.342650 CCCGGTTTGCCACATGAGG 61.343 63.158 4.57 4.57 34.09 3.86
433 434 2.342650 CCCCGGTTTGCCACATGAG 61.343 63.158 0.00 0.00 34.09 2.90
434 435 1.780107 TACCCCGGTTTGCCACATGA 61.780 55.000 0.00 0.00 34.09 3.07
435 436 0.896019 TTACCCCGGTTTGCCACATG 60.896 55.000 0.00 0.00 34.09 3.21
436 437 0.178958 TTTACCCCGGTTTGCCACAT 60.179 50.000 0.00 0.00 34.09 3.21
437 438 0.396695 TTTTACCCCGGTTTGCCACA 60.397 50.000 0.00 0.00 34.09 4.17
438 439 0.970640 ATTTTACCCCGGTTTGCCAC 59.029 50.000 0.00 0.00 34.09 5.01
439 440 2.225066 ACTATTTTACCCCGGTTTGCCA 60.225 45.455 0.00 0.00 34.09 4.92
440 441 2.424601 GACTATTTTACCCCGGTTTGCC 59.575 50.000 0.00 0.00 0.00 4.52
441 442 3.083293 TGACTATTTTACCCCGGTTTGC 58.917 45.455 0.00 0.00 0.00 3.68
442 443 3.128068 GCTGACTATTTTACCCCGGTTTG 59.872 47.826 0.00 0.00 0.00 2.93
443 444 3.349927 GCTGACTATTTTACCCCGGTTT 58.650 45.455 0.00 0.00 0.00 3.27
444 445 2.678769 CGCTGACTATTTTACCCCGGTT 60.679 50.000 0.00 0.00 0.00 4.44
445 446 1.134610 CGCTGACTATTTTACCCCGGT 60.135 52.381 0.00 0.00 0.00 5.28
446 447 1.578583 CGCTGACTATTTTACCCCGG 58.421 55.000 0.00 0.00 0.00 5.73
447 448 1.578583 CCGCTGACTATTTTACCCCG 58.421 55.000 0.00 0.00 0.00 5.73
448 449 1.306148 GCCGCTGACTATTTTACCCC 58.694 55.000 0.00 0.00 0.00 4.95
449 450 1.306148 GGCCGCTGACTATTTTACCC 58.694 55.000 0.00 0.00 0.00 3.69
450 451 0.935196 CGGCCGCTGACTATTTTACC 59.065 55.000 14.67 0.00 0.00 2.85
451 452 0.935196 CCGGCCGCTGACTATTTTAC 59.065 55.000 22.85 0.00 0.00 2.01
452 453 0.812412 GCCGGCCGCTGACTATTTTA 60.812 55.000 22.85 0.00 0.00 1.52
453 454 2.112815 GCCGGCCGCTGACTATTTT 61.113 57.895 22.85 0.00 0.00 1.82
454 455 2.513897 GCCGGCCGCTGACTATTT 60.514 61.111 22.85 0.00 0.00 1.40
455 456 4.547367 GGCCGGCCGCTGACTATT 62.547 66.667 33.60 0.00 37.74 1.73
467 468 3.499737 GACGCTTGTGATGGCCGG 61.500 66.667 0.00 0.00 0.00 6.13
468 469 3.853330 CGACGCTTGTGATGGCCG 61.853 66.667 0.00 0.00 0.00 6.13
469 470 2.740714 GACGACGCTTGTGATGGCC 61.741 63.158 0.00 0.00 0.00 5.36
470 471 2.740714 GGACGACGCTTGTGATGGC 61.741 63.158 0.00 0.00 0.00 4.40
471 472 2.100631 GGGACGACGCTTGTGATGG 61.101 63.158 0.00 0.00 0.00 3.51
472 473 0.740868 ATGGGACGACGCTTGTGATG 60.741 55.000 3.44 0.00 0.00 3.07
473 474 0.460284 GATGGGACGACGCTTGTGAT 60.460 55.000 3.44 0.00 0.00 3.06
474 475 1.080093 GATGGGACGACGCTTGTGA 60.080 57.895 3.44 0.00 0.00 3.58
475 476 0.670546 AAGATGGGACGACGCTTGTG 60.671 55.000 3.44 0.00 0.00 3.33
476 477 0.389948 GAAGATGGGACGACGCTTGT 60.390 55.000 3.44 0.00 0.00 3.16
477 478 0.389817 TGAAGATGGGACGACGCTTG 60.390 55.000 3.44 0.00 0.00 4.01
478 479 0.537188 ATGAAGATGGGACGACGCTT 59.463 50.000 3.44 0.00 0.00 4.68
479 480 0.537188 AATGAAGATGGGACGACGCT 59.463 50.000 3.44 0.00 0.00 5.07
480 481 0.652592 CAATGAAGATGGGACGACGC 59.347 55.000 0.00 0.00 0.00 5.19
481 482 0.652592 GCAATGAAGATGGGACGACG 59.347 55.000 0.00 0.00 0.00 5.12
482 483 1.017387 GGCAATGAAGATGGGACGAC 58.983 55.000 0.00 0.00 0.00 4.34
483 484 0.911769 AGGCAATGAAGATGGGACGA 59.088 50.000 0.00 0.00 0.00 4.20
484 485 1.303309 GAGGCAATGAAGATGGGACG 58.697 55.000 0.00 0.00 0.00 4.79
485 486 1.213926 AGGAGGCAATGAAGATGGGAC 59.786 52.381 0.00 0.00 0.00 4.46
486 487 1.600058 AGGAGGCAATGAAGATGGGA 58.400 50.000 0.00 0.00 0.00 4.37
487 488 3.418995 CATAGGAGGCAATGAAGATGGG 58.581 50.000 0.00 0.00 0.00 4.00
488 489 2.818432 GCATAGGAGGCAATGAAGATGG 59.182 50.000 0.00 0.00 0.00 3.51
489 490 3.483421 TGCATAGGAGGCAATGAAGATG 58.517 45.455 0.00 0.00 38.54 2.90
490 491 3.393609 TCTGCATAGGAGGCAATGAAGAT 59.606 43.478 0.00 0.00 41.39 2.40
491 492 2.773661 TCTGCATAGGAGGCAATGAAGA 59.226 45.455 0.00 0.00 41.39 2.87
492 493 3.204306 TCTGCATAGGAGGCAATGAAG 57.796 47.619 0.00 0.00 41.39 3.02
493 494 3.483421 CATCTGCATAGGAGGCAATGAA 58.517 45.455 0.00 0.00 41.39 2.57
494 495 2.812983 GCATCTGCATAGGAGGCAATGA 60.813 50.000 6.24 0.00 41.39 2.57
495 496 1.540267 GCATCTGCATAGGAGGCAATG 59.460 52.381 6.24 0.00 41.39 2.82
496 497 1.424302 AGCATCTGCATAGGAGGCAAT 59.576 47.619 12.70 0.00 42.03 3.56
497 498 0.841961 AGCATCTGCATAGGAGGCAA 59.158 50.000 12.70 0.00 42.03 4.52
498 499 0.841961 AAGCATCTGCATAGGAGGCA 59.158 50.000 12.70 0.00 42.03 4.75
499 500 1.521580 GAAGCATCTGCATAGGAGGC 58.478 55.000 4.79 3.14 45.16 4.70
500 501 1.607509 CCGAAGCATCTGCATAGGAGG 60.608 57.143 4.79 0.00 45.16 4.30
501 502 1.607509 CCCGAAGCATCTGCATAGGAG 60.608 57.143 7.93 0.00 45.16 3.69
502 503 0.394192 CCCGAAGCATCTGCATAGGA 59.606 55.000 7.93 0.00 45.16 2.94
503 504 0.107456 ACCCGAAGCATCTGCATAGG 59.893 55.000 4.79 2.32 45.16 2.57
504 505 1.600957 CAACCCGAAGCATCTGCATAG 59.399 52.381 4.79 0.00 45.16 2.23
505 506 1.667236 CAACCCGAAGCATCTGCATA 58.333 50.000 4.79 0.00 45.16 3.14
506 507 1.660560 GCAACCCGAAGCATCTGCAT 61.661 55.000 4.79 0.00 45.16 3.96
507 508 2.334946 GCAACCCGAAGCATCTGCA 61.335 57.895 4.79 0.00 45.16 4.41
508 509 2.486966 GCAACCCGAAGCATCTGC 59.513 61.111 0.00 0.00 42.49 4.26
509 510 1.033746 ATGGCAACCCGAAGCATCTG 61.034 55.000 0.00 0.00 0.00 2.90
510 511 1.033746 CATGGCAACCCGAAGCATCT 61.034 55.000 0.00 0.00 0.00 2.90
511 512 1.434696 CATGGCAACCCGAAGCATC 59.565 57.895 0.00 0.00 0.00 3.91
512 513 2.053865 CCATGGCAACCCGAAGCAT 61.054 57.895 0.00 0.00 0.00 3.79
513 514 2.676121 CCATGGCAACCCGAAGCA 60.676 61.111 0.00 0.00 0.00 3.91
514 515 3.451894 CCCATGGCAACCCGAAGC 61.452 66.667 6.09 0.00 0.00 3.86
515 516 2.755469 CCCCATGGCAACCCGAAG 60.755 66.667 6.09 0.00 0.00 3.79
525 526 4.387343 AACCCTGCAGCCCCATGG 62.387 66.667 8.66 4.14 0.00 3.66
526 527 2.866523 ATCAACCCTGCAGCCCCATG 62.867 60.000 8.66 2.61 0.00 3.66
527 528 1.288508 TATCAACCCTGCAGCCCCAT 61.289 55.000 8.66 0.00 0.00 4.00
528 529 1.505151 TTATCAACCCTGCAGCCCCA 61.505 55.000 8.66 0.00 0.00 4.96
529 530 0.324275 TTTATCAACCCTGCAGCCCC 60.324 55.000 8.66 0.00 0.00 5.80
530 531 1.204704 GTTTTATCAACCCTGCAGCCC 59.795 52.381 8.66 0.00 0.00 5.19
531 532 2.171003 AGTTTTATCAACCCTGCAGCC 58.829 47.619 8.66 0.00 0.00 4.85
532 533 3.942130 AAGTTTTATCAACCCTGCAGC 57.058 42.857 8.66 0.00 0.00 5.25
533 534 9.520204 CATATAAAAGTTTTATCAACCCTGCAG 57.480 33.333 21.32 6.78 0.00 4.41
534 535 7.978975 GCATATAAAAGTTTTATCAACCCTGCA 59.021 33.333 21.32 4.55 0.00 4.41
535 536 7.167468 CGCATATAAAAGTTTTATCAACCCTGC 59.833 37.037 21.32 18.15 0.00 4.85
536 537 8.188139 ACGCATATAAAAGTTTTATCAACCCTG 58.812 33.333 21.32 12.46 0.00 4.45
537 538 8.288689 ACGCATATAAAAGTTTTATCAACCCT 57.711 30.769 21.32 2.96 0.00 4.34
538 539 8.803799 CAACGCATATAAAAGTTTTATCAACCC 58.196 33.333 21.32 8.49 0.00 4.11
539 540 8.803799 CCAACGCATATAAAAGTTTTATCAACC 58.196 33.333 21.32 9.87 0.00 3.77
540 541 8.318167 GCCAACGCATATAAAAGTTTTATCAAC 58.682 33.333 21.32 12.18 34.03 3.18
541 542 8.029522 TGCCAACGCATATAAAAGTTTTATCAA 58.970 29.630 21.32 8.38 41.12 2.57
542 543 7.539436 TGCCAACGCATATAAAAGTTTTATCA 58.461 30.769 21.32 9.46 41.12 2.15
543 544 7.979115 TGCCAACGCATATAAAAGTTTTATC 57.021 32.000 21.32 9.13 41.12 1.75
579 580 4.479158 ACCCAACTGCCTAATCTCAAAAA 58.521 39.130 0.00 0.00 0.00 1.94
580 581 4.112634 ACCCAACTGCCTAATCTCAAAA 57.887 40.909 0.00 0.00 0.00 2.44
581 582 3.806949 ACCCAACTGCCTAATCTCAAA 57.193 42.857 0.00 0.00 0.00 2.69
582 583 3.073798 TCAACCCAACTGCCTAATCTCAA 59.926 43.478 0.00 0.00 0.00 3.02
583 584 2.642311 TCAACCCAACTGCCTAATCTCA 59.358 45.455 0.00 0.00 0.00 3.27
584 585 3.350219 TCAACCCAACTGCCTAATCTC 57.650 47.619 0.00 0.00 0.00 2.75
585 586 3.690460 CTTCAACCCAACTGCCTAATCT 58.310 45.455 0.00 0.00 0.00 2.40
586 587 2.164422 GCTTCAACCCAACTGCCTAATC 59.836 50.000 0.00 0.00 0.00 1.75
587 588 2.171003 GCTTCAACCCAACTGCCTAAT 58.829 47.619 0.00 0.00 0.00 1.73
588 589 1.133637 TGCTTCAACCCAACTGCCTAA 60.134 47.619 0.00 0.00 0.00 2.69
589 590 0.476338 TGCTTCAACCCAACTGCCTA 59.524 50.000 0.00 0.00 0.00 3.93
590 591 0.396974 TTGCTTCAACCCAACTGCCT 60.397 50.000 0.00 0.00 0.00 4.75
591 592 0.032540 CTTGCTTCAACCCAACTGCC 59.967 55.000 0.00 0.00 0.00 4.85
592 593 0.598419 GCTTGCTTCAACCCAACTGC 60.598 55.000 0.00 0.00 0.00 4.40
593 594 1.000938 GAGCTTGCTTCAACCCAACTG 60.001 52.381 0.00 0.00 0.00 3.16
594 595 1.322442 GAGCTTGCTTCAACCCAACT 58.678 50.000 0.00 0.00 0.00 3.16
595 596 0.315251 GGAGCTTGCTTCAACCCAAC 59.685 55.000 0.00 0.00 0.00 3.77
596 597 0.106268 TGGAGCTTGCTTCAACCCAA 60.106 50.000 0.38 0.00 0.00 4.12
597 598 0.106268 TTGGAGCTTGCTTCAACCCA 60.106 50.000 11.90 4.28 0.00 4.51
598 599 1.000171 CTTTGGAGCTTGCTTCAACCC 60.000 52.381 15.16 3.37 0.00 4.11
599 600 1.000171 CCTTTGGAGCTTGCTTCAACC 60.000 52.381 15.16 3.73 0.00 3.77
600 601 1.956477 TCCTTTGGAGCTTGCTTCAAC 59.044 47.619 15.16 0.00 0.00 3.18
601 602 2.233271 CTCCTTTGGAGCTTGCTTCAA 58.767 47.619 11.90 11.90 43.29 2.69
602 603 1.901591 CTCCTTTGGAGCTTGCTTCA 58.098 50.000 0.00 0.00 43.29 3.02
611 612 2.507471 AGTATGAAGGCCTCCTTTGGAG 59.493 50.000 5.23 6.64 44.82 3.86
612 613 2.505819 GAGTATGAAGGCCTCCTTTGGA 59.494 50.000 5.23 0.00 44.82 3.53
613 614 2.239654 TGAGTATGAAGGCCTCCTTTGG 59.760 50.000 5.23 0.00 44.82 3.28
614 615 3.054802 AGTGAGTATGAAGGCCTCCTTTG 60.055 47.826 5.23 0.00 44.82 2.77
615 616 3.054802 CAGTGAGTATGAAGGCCTCCTTT 60.055 47.826 5.23 0.00 44.82 3.11
617 618 2.114616 CAGTGAGTATGAAGGCCTCCT 58.885 52.381 5.23 0.00 33.87 3.69
618 619 1.834263 ACAGTGAGTATGAAGGCCTCC 59.166 52.381 5.23 0.00 0.00 4.30
619 620 3.055819 TGAACAGTGAGTATGAAGGCCTC 60.056 47.826 5.23 0.00 0.00 4.70
620 621 2.906389 TGAACAGTGAGTATGAAGGCCT 59.094 45.455 0.00 0.00 0.00 5.19
621 622 3.003480 GTGAACAGTGAGTATGAAGGCC 58.997 50.000 0.00 0.00 0.00 5.19
622 623 3.664107 TGTGAACAGTGAGTATGAAGGC 58.336 45.455 0.00 0.00 0.00 4.35
623 624 8.633561 TCTATATGTGAACAGTGAGTATGAAGG 58.366 37.037 0.00 0.00 0.00 3.46
624 625 9.676195 CTCTATATGTGAACAGTGAGTATGAAG 57.324 37.037 0.00 0.00 0.00 3.02
625 626 8.633561 CCTCTATATGTGAACAGTGAGTATGAA 58.366 37.037 0.00 0.00 0.00 2.57
626 627 7.780271 ACCTCTATATGTGAACAGTGAGTATGA 59.220 37.037 0.00 0.00 0.00 2.15
627 628 7.946207 ACCTCTATATGTGAACAGTGAGTATG 58.054 38.462 0.00 0.00 0.00 2.39
628 629 8.417106 CAACCTCTATATGTGAACAGTGAGTAT 58.583 37.037 0.00 0.00 0.00 2.12
629 630 7.147897 CCAACCTCTATATGTGAACAGTGAGTA 60.148 40.741 0.00 0.00 0.00 2.59
630 631 6.351371 CCAACCTCTATATGTGAACAGTGAGT 60.351 42.308 0.00 0.00 0.00 3.41
631 632 6.045318 CCAACCTCTATATGTGAACAGTGAG 58.955 44.000 0.00 0.00 0.00 3.51
632 633 5.104941 CCCAACCTCTATATGTGAACAGTGA 60.105 44.000 0.00 0.00 0.00 3.41
633 634 5.104941 TCCCAACCTCTATATGTGAACAGTG 60.105 44.000 0.00 0.00 0.00 3.66
634 635 5.030147 TCCCAACCTCTATATGTGAACAGT 58.970 41.667 0.00 0.00 0.00 3.55
635 636 5.453903 CCTCCCAACCTCTATATGTGAACAG 60.454 48.000 0.00 0.00 0.00 3.16
636 637 4.408921 CCTCCCAACCTCTATATGTGAACA 59.591 45.833 0.00 0.00 0.00 3.18
637 638 4.743955 GCCTCCCAACCTCTATATGTGAAC 60.744 50.000 0.00 0.00 0.00 3.18
638 639 3.391296 GCCTCCCAACCTCTATATGTGAA 59.609 47.826 0.00 0.00 0.00 3.18
639 640 2.972713 GCCTCCCAACCTCTATATGTGA 59.027 50.000 0.00 0.00 0.00 3.58
640 641 2.039084 GGCCTCCCAACCTCTATATGTG 59.961 54.545 0.00 0.00 0.00 3.21
641 642 2.339769 GGCCTCCCAACCTCTATATGT 58.660 52.381 0.00 0.00 0.00 2.29
642 643 2.039084 GTGGCCTCCCAACCTCTATATG 59.961 54.545 3.32 0.00 44.33 1.78
643 644 2.339769 GTGGCCTCCCAACCTCTATAT 58.660 52.381 3.32 0.00 44.33 0.86
644 645 1.802553 GTGGCCTCCCAACCTCTATA 58.197 55.000 3.32 0.00 44.33 1.31
645 646 1.338136 CGTGGCCTCCCAACCTCTAT 61.338 60.000 3.32 0.00 44.33 1.98
646 647 1.987855 CGTGGCCTCCCAACCTCTA 60.988 63.158 3.32 0.00 44.33 2.43
647 648 3.322466 CGTGGCCTCCCAACCTCT 61.322 66.667 3.32 0.00 44.33 3.69
661 662 0.934496 TTGAACTTTCTCCACGCGTG 59.066 50.000 31.77 31.77 0.00 5.34
662 663 1.658994 TTTGAACTTTCTCCACGCGT 58.341 45.000 5.58 5.58 0.00 6.01
663 664 2.748461 TTTTGAACTTTCTCCACGCG 57.252 45.000 3.53 3.53 0.00 6.01
681 682 6.633500 TCCATCTTTCAATCGTCACTTTTT 57.367 33.333 0.00 0.00 0.00 1.94
682 683 6.430925 TCATCCATCTTTCAATCGTCACTTTT 59.569 34.615 0.00 0.00 0.00 2.27
683 684 5.939883 TCATCCATCTTTCAATCGTCACTTT 59.060 36.000 0.00 0.00 0.00 2.66
684 685 5.352569 GTCATCCATCTTTCAATCGTCACTT 59.647 40.000 0.00 0.00 0.00 3.16
685 686 4.872691 GTCATCCATCTTTCAATCGTCACT 59.127 41.667 0.00 0.00 0.00 3.41
686 687 4.259970 CGTCATCCATCTTTCAATCGTCAC 60.260 45.833 0.00 0.00 0.00 3.67
687 688 3.865164 CGTCATCCATCTTTCAATCGTCA 59.135 43.478 0.00 0.00 0.00 4.35
688 689 4.112634 TCGTCATCCATCTTTCAATCGTC 58.887 43.478 0.00 0.00 0.00 4.20
689 690 4.123497 TCGTCATCCATCTTTCAATCGT 57.877 40.909 0.00 0.00 0.00 3.73
690 691 5.663795 AATCGTCATCCATCTTTCAATCG 57.336 39.130 0.00 0.00 0.00 3.34
691 692 7.253422 ACAAAATCGTCATCCATCTTTCAATC 58.747 34.615 0.00 0.00 0.00 2.67
692 693 7.161773 ACAAAATCGTCATCCATCTTTCAAT 57.838 32.000 0.00 0.00 0.00 2.57
693 694 6.573664 ACAAAATCGTCATCCATCTTTCAA 57.426 33.333 0.00 0.00 0.00 2.69
694 695 6.573664 AACAAAATCGTCATCCATCTTTCA 57.426 33.333 0.00 0.00 0.00 2.69
695 696 7.905493 GTCTAACAAAATCGTCATCCATCTTTC 59.095 37.037 0.00 0.00 0.00 2.62
696 697 7.607991 AGTCTAACAAAATCGTCATCCATCTTT 59.392 33.333 0.00 0.00 0.00 2.52
697 698 7.106239 AGTCTAACAAAATCGTCATCCATCTT 58.894 34.615 0.00 0.00 0.00 2.40
698 699 6.644347 AGTCTAACAAAATCGTCATCCATCT 58.356 36.000 0.00 0.00 0.00 2.90
699 700 6.910536 AGTCTAACAAAATCGTCATCCATC 57.089 37.500 0.00 0.00 0.00 3.51
700 701 7.687941 AAAGTCTAACAAAATCGTCATCCAT 57.312 32.000 0.00 0.00 0.00 3.41
701 702 7.504924 AAAAGTCTAACAAAATCGTCATCCA 57.495 32.000 0.00 0.00 0.00 3.41
723 724 8.850156 GGAGTACCATATAGTACCGACTAAAAA 58.150 37.037 7.70 0.00 43.02 1.94
724 725 7.998383 TGGAGTACCATATAGTACCGACTAAAA 59.002 37.037 7.70 0.00 43.02 1.52
725 726 7.517320 TGGAGTACCATATAGTACCGACTAAA 58.483 38.462 7.70 0.00 43.02 1.85
726 727 7.078249 TGGAGTACCATATAGTACCGACTAA 57.922 40.000 7.70 0.00 43.02 2.24
727 728 6.686484 TGGAGTACCATATAGTACCGACTA 57.314 41.667 7.70 0.00 43.02 2.59
728 729 5.573380 TGGAGTACCATATAGTACCGACT 57.427 43.478 7.70 0.00 43.02 4.18
729 730 6.442112 GTTTGGAGTACCATATAGTACCGAC 58.558 44.000 7.70 0.66 46.34 4.79
730 731 5.536161 GGTTTGGAGTACCATATAGTACCGA 59.464 44.000 7.70 0.00 46.34 4.69
731 732 5.563475 CGGTTTGGAGTACCATATAGTACCG 60.563 48.000 7.70 2.15 46.34 4.02
732 733 5.536161 TCGGTTTGGAGTACCATATAGTACC 59.464 44.000 7.70 0.92 46.34 3.34
733 734 6.639632 TCGGTTTGGAGTACCATATAGTAC 57.360 41.667 3.51 3.51 46.34 2.73
734 735 6.835488 AGTTCGGTTTGGAGTACCATATAGTA 59.165 38.462 0.00 0.00 46.34 1.82
735 736 5.659971 AGTTCGGTTTGGAGTACCATATAGT 59.340 40.000 0.00 0.00 46.34 2.12
736 737 5.983720 CAGTTCGGTTTGGAGTACCATATAG 59.016 44.000 0.00 0.00 46.34 1.31
737 738 5.682990 GCAGTTCGGTTTGGAGTACCATATA 60.683 44.000 0.00 0.00 46.34 0.86
738 739 4.766375 CAGTTCGGTTTGGAGTACCATAT 58.234 43.478 0.00 0.00 46.34 1.78
739 740 3.618019 GCAGTTCGGTTTGGAGTACCATA 60.618 47.826 0.00 0.00 46.34 2.74
740 741 2.874457 GCAGTTCGGTTTGGAGTACCAT 60.874 50.000 0.00 0.00 46.34 3.55
741 742 1.541670 GCAGTTCGGTTTGGAGTACCA 60.542 52.381 0.00 0.00 45.34 3.25
742 743 1.154197 GCAGTTCGGTTTGGAGTACC 58.846 55.000 0.00 0.00 0.00 3.34
743 744 1.154197 GGCAGTTCGGTTTGGAGTAC 58.846 55.000 0.00 0.00 0.00 2.73
744 745 0.759959 TGGCAGTTCGGTTTGGAGTA 59.240 50.000 0.00 0.00 0.00 2.59
745 746 0.535102 CTGGCAGTTCGGTTTGGAGT 60.535 55.000 6.28 0.00 0.00 3.85
746 747 0.535102 ACTGGCAGTTCGGTTTGGAG 60.535 55.000 15.88 0.00 0.00 3.86
747 748 0.106918 AACTGGCAGTTCGGTTTGGA 60.107 50.000 26.54 0.00 31.77 3.53
748 749 0.744281 AAACTGGCAGTTCGGTTTGG 59.256 50.000 31.24 0.00 42.59 3.28
750 751 0.744281 CCAAACTGGCAGTTCGGTTT 59.256 50.000 31.24 14.18 44.35 3.27
751 752 0.106918 TCCAAACTGGCAGTTCGGTT 60.107 50.000 30.82 15.65 37.47 4.44
752 753 0.110486 ATCCAAACTGGCAGTTCGGT 59.890 50.000 30.82 19.25 37.47 4.69
753 754 0.523072 CATCCAAACTGGCAGTTCGG 59.477 55.000 31.24 29.44 37.47 4.30
754 755 1.238439 ACATCCAAACTGGCAGTTCG 58.762 50.000 31.24 21.74 37.47 3.95
755 756 7.094634 CCATATATACATCCAAACTGGCAGTTC 60.095 40.741 31.24 0.00 37.47 3.01
756 757 6.716628 CCATATATACATCCAAACTGGCAGTT 59.283 38.462 26.54 26.54 40.80 3.16
757 758 6.240894 CCATATATACATCCAAACTGGCAGT 58.759 40.000 15.88 15.88 37.47 4.40
758 759 5.124457 GCCATATATACATCCAAACTGGCAG 59.876 44.000 14.16 14.16 44.63 4.85
759 760 5.009631 GCCATATATACATCCAAACTGGCA 58.990 41.667 11.55 0.00 44.63 4.92
760 761 5.124457 CAGCCATATATACATCCAAACTGGC 59.876 44.000 9.28 9.28 45.39 4.85
761 762 6.475504 TCAGCCATATATACATCCAAACTGG 58.524 40.000 0.00 0.00 39.43 4.00
762 763 8.571461 AATCAGCCATATATACATCCAAACTG 57.429 34.615 0.00 0.00 0.00 3.16
763 764 8.609483 AGAATCAGCCATATATACATCCAAACT 58.391 33.333 0.00 0.00 0.00 2.66
764 765 8.798859 AGAATCAGCCATATATACATCCAAAC 57.201 34.615 0.00 0.00 0.00 2.93
765 766 9.453572 GAAGAATCAGCCATATATACATCCAAA 57.546 33.333 0.00 0.00 0.00 3.28
766 767 8.829746 AGAAGAATCAGCCATATATACATCCAA 58.170 33.333 0.00 0.00 0.00 3.53
767 768 8.384693 AGAAGAATCAGCCATATATACATCCA 57.615 34.615 0.00 0.00 0.00 3.41
768 769 9.979578 CTAGAAGAATCAGCCATATATACATCC 57.020 37.037 0.00 0.00 0.00 3.51
769 770 9.474920 GCTAGAAGAATCAGCCATATATACATC 57.525 37.037 0.00 0.00 0.00 3.06
770 771 8.985922 TGCTAGAAGAATCAGCCATATATACAT 58.014 33.333 0.00 0.00 34.31 2.29
771 772 8.366359 TGCTAGAAGAATCAGCCATATATACA 57.634 34.615 0.00 0.00 34.31 2.29
774 775 9.431690 TCTATGCTAGAAGAATCAGCCATATAT 57.568 33.333 0.00 0.00 34.31 0.86
775 776 8.829373 TCTATGCTAGAAGAATCAGCCATATA 57.171 34.615 0.00 0.00 34.31 0.86
776 777 7.399765 ACTCTATGCTAGAAGAATCAGCCATAT 59.600 37.037 0.00 0.00 33.75 1.78
777 778 6.723515 ACTCTATGCTAGAAGAATCAGCCATA 59.276 38.462 0.00 0.00 33.75 2.74
778 779 5.543405 ACTCTATGCTAGAAGAATCAGCCAT 59.457 40.000 0.00 0.00 33.75 4.40
779 780 4.898265 ACTCTATGCTAGAAGAATCAGCCA 59.102 41.667 0.00 0.00 33.75 4.75
780 781 5.467035 ACTCTATGCTAGAAGAATCAGCC 57.533 43.478 0.00 0.00 33.75 4.85
781 782 5.177327 GCAACTCTATGCTAGAAGAATCAGC 59.823 44.000 0.00 0.00 43.06 4.26
782 783 6.768029 GCAACTCTATGCTAGAAGAATCAG 57.232 41.667 0.00 0.00 43.06 2.90
794 795 6.334202 ACAGTAGTTAAGAGCAACTCTATGC 58.666 40.000 0.00 0.00 40.28 3.14
797 798 9.239551 TCAATACAGTAGTTAAGAGCAACTCTA 57.760 33.333 0.00 0.00 40.28 2.43
798 799 8.123639 TCAATACAGTAGTTAAGAGCAACTCT 57.876 34.615 0.00 0.00 43.37 3.24
799 800 8.758633 TTCAATACAGTAGTTAAGAGCAACTC 57.241 34.615 0.00 0.00 39.45 3.01
800 801 9.555727 TTTTCAATACAGTAGTTAAGAGCAACT 57.444 29.630 0.00 0.00 41.56 3.16
803 804 9.332502 TGTTTTTCAATACAGTAGTTAAGAGCA 57.667 29.630 0.00 0.00 0.00 4.26
862 863 9.856803 GTGCGTAAACATGTTTTTCAATAAAAT 57.143 25.926 27.66 2.77 34.62 1.82
863 864 8.869897 TGTGCGTAAACATGTTTTTCAATAAAA 58.130 25.926 27.66 4.89 34.23 1.52
864 865 8.321716 GTGTGCGTAAACATGTTTTTCAATAAA 58.678 29.630 27.66 5.63 34.23 1.40
865 866 7.702772 AGTGTGCGTAAACATGTTTTTCAATAA 59.297 29.630 27.66 6.38 34.23 1.40
871 872 4.739195 ACAGTGTGCGTAAACATGTTTTT 58.261 34.783 27.66 8.57 34.23 1.94
966 971 2.048127 GTTTGCCGAGGACGCTCT 60.048 61.111 0.00 0.00 38.29 4.09
967 972 1.503818 TTTGTTTGCCGAGGACGCTC 61.504 55.000 0.00 0.00 38.29 5.03
968 973 1.098712 TTTTGTTTGCCGAGGACGCT 61.099 50.000 0.00 0.00 38.29 5.07
969 974 0.248702 TTTTTGTTTGCCGAGGACGC 60.249 50.000 0.00 0.00 38.29 5.19
1108 1150 1.045911 GGTGAGGAAGGAGAGGCGAT 61.046 60.000 0.00 0.00 0.00 4.58
1110 1152 2.896443 GGTGAGGAAGGAGAGGCG 59.104 66.667 0.00 0.00 0.00 5.52
1131 1173 0.175302 CTGCAGCAGAGAGTAGGTGG 59.825 60.000 18.42 0.00 32.44 4.61
1296 1338 2.295629 TGAAATGCGCAAAGTTGGATCA 59.704 40.909 17.11 7.41 0.00 2.92
1298 1345 3.194116 AGATGAAATGCGCAAAGTTGGAT 59.806 39.130 17.11 0.00 0.00 3.41
1339 1386 0.453793 CTCCGTAGTGACTGCCAGAG 59.546 60.000 0.00 0.00 0.00 3.35
1483 1530 5.854010 ACTCCGAGTAATCAAGCTCATTA 57.146 39.130 0.00 0.00 0.00 1.90
1773 3102 1.952621 ACTAGAACCAGCTAAGGGCA 58.047 50.000 0.00 0.00 44.79 5.36
1827 3156 2.511218 ACTGGTTCAGCCACATATCCAT 59.489 45.455 0.00 0.00 43.61 3.41
1836 3165 2.957402 AGAATTCACTGGTTCAGCCA 57.043 45.000 8.44 0.00 46.95 4.75
1865 3194 4.338795 TCTAGGAACTCTCACCTTCCAT 57.661 45.455 0.00 0.00 41.75 3.41
1880 3209 0.908910 TGCCGCCTTTCAATCTAGGA 59.091 50.000 0.00 0.00 33.13 2.94
1895 3224 1.591183 CAAAACCCCCATCTTGCCG 59.409 57.895 0.00 0.00 0.00 5.69
2026 3356 3.255888 CCTTATGCGACACAGGCTATAGA 59.744 47.826 3.21 0.00 0.00 1.98
2033 3363 1.138859 TCCATCCTTATGCGACACAGG 59.861 52.381 0.00 0.00 0.00 4.00
2037 3367 1.138859 CCACTCCATCCTTATGCGACA 59.861 52.381 0.00 0.00 0.00 4.35
2074 3404 8.932945 AGTATTCGGATATATACATTGTGCTG 57.067 34.615 0.00 0.00 31.20 4.41
2102 3432 7.123247 GCCCATCAATATATGTTCCAAATAGCT 59.877 37.037 0.00 0.00 0.00 3.32
2141 3471 7.287927 TGCTAGCAGTCCTAAATCTAAGTACAT 59.712 37.037 14.93 0.00 0.00 2.29
2318 3648 9.614792 ACTTTTCTTATAGTTGAAGTGACAGTT 57.385 29.630 0.00 0.00 0.00 3.16
2397 3727 9.359653 GTGGTCTATCCTACAAGGTTATACTTA 57.640 37.037 0.00 0.00 36.53 2.24
2398 3728 7.842743 TGTGGTCTATCCTACAAGGTTATACTT 59.157 37.037 0.00 0.00 36.53 2.24
2399 3729 7.359849 TGTGGTCTATCCTACAAGGTTATACT 58.640 38.462 0.00 0.00 36.53 2.12
2447 3777 8.773033 AGAATGACCAAAATAGGCAATAATCT 57.227 30.769 0.00 0.00 0.00 2.40
3144 4517 5.106948 CGCCATCAAGGTTATATGTAGCAAG 60.107 44.000 0.00 0.00 40.61 4.01
3180 4555 3.384168 ACATAGCCATAAGAGGTCCACA 58.616 45.455 0.00 0.00 0.00 4.17
3237 4612 7.035004 TGCTTGAACAAAATATCCAGCATTAC 58.965 34.615 0.00 0.00 38.83 1.89
3455 4902 8.174422 TGCTTTTGCTGAAACAAATTAAGTTTC 58.826 29.630 20.91 20.91 46.55 2.78
3844 5291 6.072893 TCCTGCGACTTACCAAAAGTTTTATC 60.073 38.462 0.00 0.00 0.00 1.75
3924 5371 5.791336 TCAGGTGCATTATAGAGTACTGG 57.209 43.478 0.00 0.00 0.00 4.00
4060 5508 6.588373 TCAAACACTTAAGTTTTCAAGCCAAC 59.412 34.615 5.07 0.00 39.55 3.77
4061 5509 6.588373 GTCAAACACTTAAGTTTTCAAGCCAA 59.412 34.615 5.07 0.00 39.55 4.52
4081 5529 7.363443 CCCCTTTTGAACTTTCTACTTGTCAAA 60.363 37.037 0.00 0.00 0.00 2.69
4115 5563 3.260632 TCCACGTTTCTGATCCTTCATGA 59.739 43.478 0.00 0.00 0.00 3.07
4184 5637 6.047511 AGCTGATCAGTGTTGAAGATAACT 57.952 37.500 23.38 4.85 36.78 2.24
4197 5650 3.840666 TGGAAACCTTCTAGCTGATCAGT 59.159 43.478 23.38 12.80 0.00 3.41
4366 5841 7.040617 GGTGTCATGAGATATTGATTGAATGCT 60.041 37.037 0.00 0.00 0.00 3.79
4426 7827 8.756927 TGATCCCTGCAATTTCAACAATTTATA 58.243 29.630 0.00 0.00 0.00 0.98
4551 8149 8.339344 TGCAGAATCTCATTTTATTTGACTGA 57.661 30.769 0.00 0.00 0.00 3.41
4712 9472 1.996191 GGAACTCATCTGACGTTCAGC 59.004 52.381 16.85 0.00 43.95 4.26
4753 9515 6.297582 TGTCGTTTTCAGGGGTAAAATAGAA 58.702 36.000 0.00 0.00 0.00 2.10
4843 9605 4.821805 TGAAAGTGGGCTAGAAGAACAAAG 59.178 41.667 0.00 0.00 0.00 2.77
4866 9628 2.599578 CAGCAAGCAAGCCAGGGT 60.600 61.111 0.00 0.00 34.23 4.34
4867 9629 2.599578 ACAGCAAGCAAGCCAGGG 60.600 61.111 0.00 0.00 34.23 4.45
4874 9636 5.003692 TGAACAAAATACACAGCAAGCAA 57.996 34.783 0.00 0.00 0.00 3.91
4909 9674 4.336280 GAAAATAGTGAGGCCCAAGAAGT 58.664 43.478 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.