Multiple sequence alignment - TraesCS5A01G219800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G219800 chr5A 100.000 7249 0 0 1 7249 436616840 436624088 0.000000e+00 13387.0
1 TraesCS5A01G219800 chr5D 94.425 2332 91 16 4930 7249 335132269 335134573 0.000000e+00 3550.0
2 TraesCS5A01G219800 chr5D 94.295 1928 81 12 1807 3711 335129264 335131185 0.000000e+00 2924.0
3 TraesCS5A01G219800 chr5D 80.406 2118 273 87 4259 6324 335219015 335221042 0.000000e+00 1482.0
4 TraesCS5A01G219800 chr5D 95.667 900 33 6 387 1283 335127860 335128756 0.000000e+00 1441.0
5 TraesCS5A01G219800 chr5D 86.439 1261 151 7 2243 3484 335217237 335218496 0.000000e+00 1363.0
6 TraesCS5A01G219800 chr5D 89.350 939 53 22 3950 4856 335131352 335132275 0.000000e+00 1136.0
7 TraesCS5A01G219800 chr5D 88.991 327 20 6 1471 1797 335128788 335129098 2.450000e-104 390.0
8 TraesCS5A01G219800 chr5D 87.651 332 35 5 966 1296 335215877 335216203 1.480000e-101 381.0
9 TraesCS5A01G219800 chr5D 84.337 249 23 9 6601 6838 335223208 335223451 5.660000e-56 230.0
10 TraesCS5A01G219800 chr5D 84.404 218 28 6 17 232 238703061 238702848 7.370000e-50 209.0
11 TraesCS5A01G219800 chr5D 85.345 116 17 0 6384 6499 335221048 335221163 3.550000e-23 121.0
12 TraesCS5A01G219800 chr5D 83.465 127 9 6 3561 3685 335218498 335218614 2.770000e-19 108.0
13 TraesCS5A01G219800 chr5D 97.917 48 1 0 3738 3785 335131185 335131232 4.660000e-12 84.2
14 TraesCS5A01G219800 chr5B 91.724 2332 146 24 4930 7249 392137908 392140204 0.000000e+00 3193.0
15 TraesCS5A01G219800 chr5B 94.093 1930 85 10 1807 3711 392127947 392129872 0.000000e+00 2905.0
16 TraesCS5A01G219800 chr5B 93.834 1930 90 10 1807 3711 392087910 392089835 0.000000e+00 2878.0
17 TraesCS5A01G219800 chr5B 85.677 1522 190 15 2205 3705 392147955 392149469 0.000000e+00 1578.0
18 TraesCS5A01G219800 chr5B 80.575 2121 277 88 4259 6306 392150075 392152133 0.000000e+00 1509.0
19 TraesCS5A01G219800 chr5B 94.670 938 40 6 361 1297 392126444 392127372 0.000000e+00 1447.0
20 TraesCS5A01G219800 chr5B 94.563 938 41 6 361 1297 392086407 392087335 0.000000e+00 1441.0
21 TraesCS5A01G219800 chr5B 92.829 516 25 6 4349 4856 392137403 392137914 0.000000e+00 737.0
22 TraesCS5A01G219800 chr5B 91.362 301 25 1 975 1275 392146398 392146697 1.880000e-110 411.0
23 TraesCS5A01G219800 chr5B 88.013 317 27 6 1 307 594139739 594140054 1.490000e-96 364.0
24 TraesCS5A01G219800 chr5B 91.860 172 12 2 4191 4362 392090566 392090735 9.400000e-59 239.0
25 TraesCS5A01G219800 chr5B 91.860 172 12 2 4191 4362 392130603 392130772 9.400000e-59 239.0
26 TraesCS5A01G219800 chr5B 86.702 188 11 10 3950 4127 392090010 392090193 5.740000e-46 196.0
27 TraesCS5A01G219800 chr5B 93.151 73 5 0 4124 4196 392090470 392090542 2.770000e-19 108.0
28 TraesCS5A01G219800 chr5B 93.151 73 5 0 4124 4196 392130507 392130579 2.770000e-19 108.0
29 TraesCS5A01G219800 chrUn 94.041 1930 86 10 1807 3711 267453012 267454937 0.000000e+00 2900.0
30 TraesCS5A01G219800 chrUn 94.883 938 39 6 361 1297 267451508 267452437 0.000000e+00 1458.0
31 TraesCS5A01G219800 chrUn 94.883 938 39 6 361 1297 340254876 340255805 0.000000e+00 1458.0
32 TraesCS5A01G219800 chrUn 89.292 551 32 9 1807 2332 340256380 340256928 0.000000e+00 665.0
33 TraesCS5A01G219800 chrUn 87.713 293 29 5 1 287 444040378 444040669 1.170000e-87 335.0
34 TraesCS5A01G219800 chrUn 91.279 172 13 2 4191 4362 267455658 267455827 4.370000e-57 233.0
35 TraesCS5A01G219800 chrUn 93.151 73 5 0 4124 4196 267455562 267455634 2.770000e-19 108.0
36 TraesCS5A01G219800 chr7B 91.357 995 62 9 5829 6818 141007941 141006966 0.000000e+00 1339.0
37 TraesCS5A01G219800 chr7A 90.476 714 51 8 6109 6819 177343273 177342574 0.000000e+00 926.0
38 TraesCS5A01G219800 chr7A 91.544 272 17 3 5829 6099 177343689 177343423 3.190000e-98 370.0
39 TraesCS5A01G219800 chr7D 90.734 572 34 5 5829 6398 175661139 175660585 0.000000e+00 745.0
40 TraesCS5A01G219800 chr7D 91.235 251 18 2 6582 6828 175659044 175658794 9.010000e-89 339.0
41 TraesCS5A01G219800 chr7D 81.877 309 21 13 1 308 64226158 64226432 2.030000e-55 228.0
42 TraesCS5A01G219800 chr3B 89.137 313 26 6 1 307 803062142 803062452 4.100000e-102 383.0
43 TraesCS5A01G219800 chr1A 88.215 297 30 3 13 304 534169579 534169283 4.160000e-92 350.0
44 TraesCS5A01G219800 chr1A 88.446 251 19 2 1 250 425261597 425261356 1.980000e-75 294.0
45 TraesCS5A01G219800 chr6D 84.665 313 27 12 1 307 24320934 24320637 7.110000e-75 292.0
46 TraesCS5A01G219800 chr3A 83.766 308 24 17 1 298 179534027 179534318 1.200000e-67 268.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G219800 chr5A 436616840 436624088 7248 False 13387.000000 13387 100.000000 1 7249 1 chr5A.!!$F1 7248
1 TraesCS5A01G219800 chr5D 335127860 335134573 6713 False 1587.533333 3550 93.440833 387 7249 6 chr5D.!!$F1 6862
2 TraesCS5A01G219800 chr5D 335215877 335223451 7574 False 614.166667 1482 84.607167 966 6838 6 chr5D.!!$F2 5872
3 TraesCS5A01G219800 chr5B 392137403 392140204 2801 False 1965.000000 3193 92.276500 4349 7249 2 chr5B.!!$F4 2900
4 TraesCS5A01G219800 chr5B 392126444 392130772 4328 False 1174.750000 2905 93.443500 361 4362 4 chr5B.!!$F3 4001
5 TraesCS5A01G219800 chr5B 392146398 392152133 5735 False 1166.000000 1578 85.871333 975 6306 3 chr5B.!!$F5 5331
6 TraesCS5A01G219800 chr5B 392086407 392090735 4328 False 972.400000 2878 92.022000 361 4362 5 chr5B.!!$F2 4001
7 TraesCS5A01G219800 chrUn 267451508 267455827 4319 False 1174.750000 2900 93.338500 361 4362 4 chrUn.!!$F2 4001
8 TraesCS5A01G219800 chrUn 340254876 340256928 2052 False 1061.500000 1458 92.087500 361 2332 2 chrUn.!!$F3 1971
9 TraesCS5A01G219800 chr7B 141006966 141007941 975 True 1339.000000 1339 91.357000 5829 6818 1 chr7B.!!$R1 989
10 TraesCS5A01G219800 chr7A 177342574 177343689 1115 True 648.000000 926 91.010000 5829 6819 2 chr7A.!!$R1 990
11 TraesCS5A01G219800 chr7D 175658794 175661139 2345 True 542.000000 745 90.984500 5829 6828 2 chr7D.!!$R1 999

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 317 0.043485 GAGGGAGGAGGGAAGGTTCT 59.957 60.000 0.00 0.00 0.00 3.01 F
803 805 0.252239 TGGAAGCCTCTGACCTGCTA 60.252 55.000 0.00 0.00 34.29 3.49 F
1549 1636 0.246635 CATATTCCGGCCCCTAGTCG 59.753 60.000 0.00 0.00 0.00 4.18 F
2739 3268 0.701147 CCTTGGCCTCCCTCTTCTTT 59.299 55.000 3.32 0.00 0.00 2.52 F
3791 4339 0.400594 ACAGTTGAGGCCTACCCAAC 59.599 55.000 22.29 22.29 42.68 3.77 F
3793 4341 1.073923 CAGTTGAGGCCTACCCAACTT 59.926 52.381 27.37 15.02 46.57 2.66 F
3795 4343 1.145571 TTGAGGCCTACCCAACTTGT 58.854 50.000 4.42 0.00 36.11 3.16 F
3797 4345 1.497286 TGAGGCCTACCCAACTTGTTT 59.503 47.619 4.42 0.00 36.11 2.83 F
4950 6155 1.512926 TTTCAACTTCAGCCTCGAGC 58.487 50.000 6.99 2.54 44.25 5.03 F
5515 6731 0.815213 TGCCGGCTAGCAATCACATC 60.815 55.000 29.70 0.00 40.56 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1313 1323 0.319405 GCTGATGCAGTGGCCTTTTT 59.681 50.000 3.32 0.00 40.13 1.94 R
2677 3206 0.586319 ACCGTCGTTTGCATTGTCAG 59.414 50.000 0.00 0.00 0.00 3.51 R
3255 3784 2.221169 TGCGAGAGTTCATTTTGTGCT 58.779 42.857 0.00 0.00 0.00 4.40 R
3847 4395 0.183492 TGCTTCAAGGCCTCAACTGT 59.817 50.000 5.23 0.00 0.00 3.55 R
5495 6711 0.179009 ATGTGATTGCTAGCCGGCAT 60.179 50.000 31.54 13.37 42.09 4.40 R
5496 6712 0.815213 GATGTGATTGCTAGCCGGCA 60.815 55.000 31.54 14.00 40.74 5.69 R
5498 6714 1.202568 TCTGATGTGATTGCTAGCCGG 60.203 52.381 13.29 0.00 0.00 6.13 R
5499 6715 2.229675 TCTGATGTGATTGCTAGCCG 57.770 50.000 13.29 0.00 0.00 5.52 R
6221 7644 0.951558 CCCCTGAAAACGACAGTTGG 59.048 55.000 0.00 0.00 41.05 3.77 R
6819 11556 2.146342 GCTAACAGCTTGAGCAAGACA 58.854 47.619 14.04 0.00 45.16 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.088762 GCACACACCGCCATCGTG 62.089 66.667 0.00 0.00 36.70 4.35
49 50 2.664851 CACACACCGCCATCGTGT 60.665 61.111 0.00 0.00 44.45 4.49
50 51 2.357034 ACACACCGCCATCGTGTC 60.357 61.111 0.00 0.00 39.64 3.67
51 52 3.478394 CACACCGCCATCGTGTCG 61.478 66.667 0.00 0.00 31.26 4.35
78 79 3.470567 CGGTCGCTGCAGACGAAC 61.471 66.667 27.66 27.66 43.71 3.95
79 80 3.112709 GGTCGCTGCAGACGAACC 61.113 66.667 27.40 24.55 41.35 3.62
80 81 3.470567 GTCGCTGCAGACGAACCG 61.471 66.667 26.82 16.42 41.93 4.44
135 136 4.322385 GTGTTGACCCGCGCCAAC 62.322 66.667 21.89 21.89 42.04 3.77
149 150 4.308458 CAACCCCACCACGCGAGA 62.308 66.667 15.93 0.00 0.00 4.04
150 151 4.003788 AACCCCACCACGCGAGAG 62.004 66.667 15.93 2.63 0.00 3.20
153 154 4.436998 CCCACCACGCGAGAGGAC 62.437 72.222 15.93 0.00 45.46 3.85
154 155 4.778415 CCACCACGCGAGAGGACG 62.778 72.222 15.93 8.44 45.46 4.79
155 156 3.733960 CACCACGCGAGAGGACGA 61.734 66.667 15.93 0.00 45.46 4.20
156 157 3.432588 ACCACGCGAGAGGACGAG 61.433 66.667 15.93 0.00 45.46 4.18
157 158 4.180946 CCACGCGAGAGGACGAGG 62.181 72.222 15.93 0.00 45.46 4.63
158 159 3.125573 CACGCGAGAGGACGAGGA 61.126 66.667 15.93 0.00 37.39 3.71
159 160 2.124653 ACGCGAGAGGACGAGGAT 60.125 61.111 15.93 0.00 37.39 3.24
160 161 2.329690 CGCGAGAGGACGAGGATG 59.670 66.667 0.00 0.00 35.09 3.51
161 162 2.026879 GCGAGAGGACGAGGATGC 59.973 66.667 0.00 0.00 35.09 3.91
162 163 2.725008 CGAGAGGACGAGGATGCC 59.275 66.667 0.00 0.00 35.09 4.40
163 164 2.851071 CGAGAGGACGAGGATGCCC 61.851 68.421 0.00 0.00 35.09 5.36
164 165 2.444895 AGAGGACGAGGATGCCCC 60.445 66.667 0.00 0.00 0.00 5.80
165 166 3.917760 GAGGACGAGGATGCCCCG 61.918 72.222 0.00 0.00 40.87 5.73
230 231 3.610669 CGGCGATGGAGGAGGGAG 61.611 72.222 0.00 0.00 0.00 4.30
231 232 3.237741 GGCGATGGAGGAGGGAGG 61.238 72.222 0.00 0.00 0.00 4.30
232 233 2.123251 GCGATGGAGGAGGGAGGA 60.123 66.667 0.00 0.00 0.00 3.71
233 234 2.206536 GCGATGGAGGAGGGAGGAG 61.207 68.421 0.00 0.00 0.00 3.69
234 235 1.532794 CGATGGAGGAGGGAGGAGG 60.533 68.421 0.00 0.00 0.00 4.30
235 236 1.152139 GATGGAGGAGGGAGGAGGG 60.152 68.421 0.00 0.00 0.00 4.30
236 237 2.687909 GATGGAGGAGGGAGGAGGGG 62.688 70.000 0.00 0.00 0.00 4.79
237 238 3.036959 GGAGGAGGGAGGAGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
238 239 2.612251 GAGGAGGGAGGAGGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
239 240 3.039526 AGGAGGGAGGAGGGGAGG 61.040 72.222 0.00 0.00 0.00 4.30
240 241 4.179599 GGAGGGAGGAGGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
241 242 4.179599 GAGGGAGGAGGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
242 243 4.761304 AGGGAGGAGGGGAGGGGA 62.761 72.222 0.00 0.00 0.00 4.81
243 244 4.179599 GGGAGGAGGGGAGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
244 245 3.036959 GGAGGAGGGGAGGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
245 246 2.284151 GAGGAGGGGAGGGGAGAC 59.716 72.222 0.00 0.00 0.00 3.36
257 258 4.521062 GGAGACCAGCAGCGCGAT 62.521 66.667 12.10 0.00 0.00 4.58
258 259 2.959071 GAGACCAGCAGCGCGATC 60.959 66.667 12.10 0.00 0.00 3.69
259 260 3.423162 GAGACCAGCAGCGCGATCT 62.423 63.158 12.10 0.00 0.00 2.75
260 261 2.064723 GAGACCAGCAGCGCGATCTA 62.065 60.000 12.10 0.00 0.00 1.98
261 262 1.659954 GACCAGCAGCGCGATCTAG 60.660 63.158 12.10 0.00 0.00 2.43
262 263 2.355599 CCAGCAGCGCGATCTAGG 60.356 66.667 12.10 0.00 0.00 3.02
263 264 2.355599 CAGCAGCGCGATCTAGGG 60.356 66.667 12.10 0.00 0.00 3.53
264 265 2.835431 AGCAGCGCGATCTAGGGT 60.835 61.111 12.10 0.00 0.00 4.34
265 266 2.107141 GCAGCGCGATCTAGGGTT 59.893 61.111 12.10 0.00 0.00 4.11
266 267 1.951631 GCAGCGCGATCTAGGGTTC 60.952 63.158 12.10 0.00 0.00 3.62
267 268 1.300233 CAGCGCGATCTAGGGTTCC 60.300 63.158 12.10 0.00 0.00 3.62
268 269 2.029221 GCGCGATCTAGGGTTCCC 59.971 66.667 12.10 0.00 0.00 3.97
269 270 2.499827 GCGCGATCTAGGGTTCCCT 61.500 63.158 12.10 15.19 40.06 4.20
270 271 1.660917 CGCGATCTAGGGTTCCCTC 59.339 63.158 14.24 0.00 37.64 4.30
271 272 1.807495 CGCGATCTAGGGTTCCCTCC 61.807 65.000 14.24 2.17 37.64 4.30
278 279 3.714001 GGGTTCCCTCCCCGTCAC 61.714 72.222 0.00 0.00 41.54 3.67
279 280 3.714001 GGTTCCCTCCCCGTCACC 61.714 72.222 0.00 0.00 0.00 4.02
280 281 2.926242 GTTCCCTCCCCGTCACCA 60.926 66.667 0.00 0.00 0.00 4.17
281 282 2.124085 TTCCCTCCCCGTCACCAT 59.876 61.111 0.00 0.00 0.00 3.55
282 283 2.297895 TTCCCTCCCCGTCACCATG 61.298 63.158 0.00 0.00 0.00 3.66
283 284 4.489771 CCCTCCCCGTCACCATGC 62.490 72.222 0.00 0.00 0.00 4.06
284 285 4.838152 CCTCCCCGTCACCATGCG 62.838 72.222 0.00 0.00 0.00 4.73
285 286 4.838152 CTCCCCGTCACCATGCGG 62.838 72.222 2.80 2.80 46.80 5.69
306 307 3.141488 CGACACGGGAGGGAGGAG 61.141 72.222 0.00 0.00 36.77 3.69
307 308 2.760385 GACACGGGAGGGAGGAGG 60.760 72.222 0.00 0.00 36.77 4.30
308 309 4.400251 ACACGGGAGGGAGGAGGG 62.400 72.222 0.00 0.00 36.77 4.30
309 310 4.075793 CACGGGAGGGAGGAGGGA 62.076 72.222 0.00 0.00 32.31 4.20
310 311 3.281787 ACGGGAGGGAGGAGGGAA 61.282 66.667 0.00 0.00 0.00 3.97
311 312 2.444895 CGGGAGGGAGGAGGGAAG 60.445 72.222 0.00 0.00 0.00 3.46
312 313 2.040359 GGGAGGGAGGAGGGAAGG 60.040 72.222 0.00 0.00 0.00 3.46
313 314 2.788589 GGAGGGAGGAGGGAAGGT 59.211 66.667 0.00 0.00 0.00 3.50
314 315 1.083141 GGAGGGAGGAGGGAAGGTT 59.917 63.158 0.00 0.00 0.00 3.50
315 316 0.983905 GGAGGGAGGAGGGAAGGTTC 60.984 65.000 0.00 0.00 0.00 3.62
316 317 0.043485 GAGGGAGGAGGGAAGGTTCT 59.957 60.000 0.00 0.00 0.00 3.01
317 318 0.498685 AGGGAGGAGGGAAGGTTCTT 59.501 55.000 0.00 0.00 0.00 2.52
318 319 1.132036 AGGGAGGAGGGAAGGTTCTTT 60.132 52.381 0.00 0.00 0.00 2.52
319 320 1.711375 GGGAGGAGGGAAGGTTCTTTT 59.289 52.381 0.00 0.00 0.00 2.27
320 321 2.110188 GGGAGGAGGGAAGGTTCTTTTT 59.890 50.000 0.00 0.00 0.00 1.94
344 345 7.681939 TTTTCAACCTTGGACTGTATATGTC 57.318 36.000 0.00 1.59 0.00 3.06
345 346 6.620877 TTCAACCTTGGACTGTATATGTCT 57.379 37.500 8.19 0.00 35.04 3.41
346 347 5.977635 TCAACCTTGGACTGTATATGTCTG 58.022 41.667 8.19 0.63 35.04 3.51
347 348 5.719563 TCAACCTTGGACTGTATATGTCTGA 59.280 40.000 8.19 2.40 35.04 3.27
348 349 6.212589 TCAACCTTGGACTGTATATGTCTGAA 59.787 38.462 8.19 3.12 35.04 3.02
349 350 6.227298 ACCTTGGACTGTATATGTCTGAAG 57.773 41.667 8.19 9.55 35.04 3.02
350 351 5.053145 CCTTGGACTGTATATGTCTGAAGC 58.947 45.833 8.19 0.00 35.04 3.86
351 352 4.672587 TGGACTGTATATGTCTGAAGCC 57.327 45.455 8.19 0.00 35.04 4.35
352 353 4.030216 TGGACTGTATATGTCTGAAGCCA 58.970 43.478 8.19 0.00 35.04 4.75
353 354 4.655649 TGGACTGTATATGTCTGAAGCCAT 59.344 41.667 8.19 0.00 35.04 4.40
354 355 5.221521 TGGACTGTATATGTCTGAAGCCATC 60.222 44.000 8.19 0.00 35.04 3.51
355 356 5.011533 GGACTGTATATGTCTGAAGCCATCT 59.988 44.000 8.19 0.00 35.04 2.90
356 357 6.209589 GGACTGTATATGTCTGAAGCCATCTA 59.790 42.308 8.19 0.00 35.04 1.98
357 358 7.225784 ACTGTATATGTCTGAAGCCATCTAG 57.774 40.000 0.00 0.00 0.00 2.43
358 359 7.007116 ACTGTATATGTCTGAAGCCATCTAGA 58.993 38.462 0.00 0.00 0.00 2.43
359 360 7.040062 ACTGTATATGTCTGAAGCCATCTAGAC 60.040 40.741 0.00 0.00 37.04 2.59
406 407 1.056660 AACCCTTCGCCAAGAGAAGA 58.943 50.000 9.31 0.00 45.78 2.87
467 468 6.824305 AATTCACTTCCTTGTTATGGACAG 57.176 37.500 0.00 0.00 39.94 3.51
507 508 1.912043 CAGGGGAGAAACCATCTGACT 59.088 52.381 0.00 0.00 40.96 3.41
542 543 3.198853 GGCTCCTTTCCTCTTGTATCAGT 59.801 47.826 0.00 0.00 0.00 3.41
546 547 6.127310 GCTCCTTTCCTCTTGTATCAGTAAGA 60.127 42.308 0.00 0.00 0.00 2.10
597 599 4.435137 TCCATAGGACTTCTTCTCCCAAA 58.565 43.478 0.00 0.00 0.00 3.28
615 617 4.154556 CCCAAATTGGACATGTGCATTTTC 59.845 41.667 27.09 3.97 40.96 2.29
641 643 7.041984 CCTGAGAAGTGAACCAAACTAAAGTAC 60.042 40.741 0.00 0.00 0.00 2.73
760 762 3.831323 ACATCCAAGTCAACCATCACAA 58.169 40.909 0.00 0.00 0.00 3.33
772 774 4.148128 ACCATCACAAGAGCCAATAGAG 57.852 45.455 0.00 0.00 0.00 2.43
780 782 4.109050 CAAGAGCCAATAGAGAAGACGTC 58.891 47.826 7.70 7.70 0.00 4.34
803 805 0.252239 TGGAAGCCTCTGACCTGCTA 60.252 55.000 0.00 0.00 34.29 3.49
809 811 1.047002 CCTCTGACCTGCTATGAGGG 58.953 60.000 0.00 0.00 40.25 4.30
830 832 0.321210 ACAACGCGTCAATGGGATCA 60.321 50.000 14.44 0.00 0.00 2.92
856 859 5.369404 TCCATCATTCAATAGGAGGCAAGTA 59.631 40.000 0.00 0.00 0.00 2.24
961 965 4.336713 GCCTCCTCAAATGTCTTGATAACC 59.663 45.833 0.00 0.00 0.00 2.85
1041 1045 2.438075 CTGCTCCTCTTGCTGCCC 60.438 66.667 0.00 0.00 0.00 5.36
1071 1075 1.202031 GCTGTCGCCCAAAATACTTCG 60.202 52.381 0.00 0.00 0.00 3.79
1074 1078 1.062148 GTCGCCCAAAATACTTCGAGC 59.938 52.381 0.00 0.00 0.00 5.03
1089 1093 1.075425 CGAGCGAAGAAGCACAGGAG 61.075 60.000 0.00 0.00 40.15 3.69
1124 1128 0.698818 ATCCTTGACTTGGGGTCCAC 59.301 55.000 0.00 0.00 43.89 4.02
1178 1182 4.155709 CTGGCTATGGAGGACTTCTATGA 58.844 47.826 0.00 0.00 0.00 2.15
1285 1295 9.077674 GTACATGTTCTCAACTGTTAGTCATAG 57.922 37.037 2.30 0.00 0.00 2.23
1286 1296 7.099764 ACATGTTCTCAACTGTTAGTCATAGG 58.900 38.462 0.00 0.00 0.00 2.57
1287 1297 5.479306 TGTTCTCAACTGTTAGTCATAGGC 58.521 41.667 0.00 0.00 0.00 3.93
1288 1298 4.737855 TCTCAACTGTTAGTCATAGGCC 57.262 45.455 0.00 0.00 0.00 5.19
1289 1299 4.093743 TCTCAACTGTTAGTCATAGGCCA 58.906 43.478 5.01 0.00 0.00 5.36
1290 1300 4.081642 TCTCAACTGTTAGTCATAGGCCAC 60.082 45.833 5.01 0.00 0.00 5.01
1291 1301 3.838317 TCAACTGTTAGTCATAGGCCACT 59.162 43.478 5.01 1.20 0.00 4.00
1292 1302 3.895232 ACTGTTAGTCATAGGCCACTG 57.105 47.619 5.01 0.97 0.00 3.66
1293 1303 2.093447 ACTGTTAGTCATAGGCCACTGC 60.093 50.000 5.01 0.00 0.00 4.40
1294 1304 1.905894 TGTTAGTCATAGGCCACTGCA 59.094 47.619 5.01 0.79 40.13 4.41
1295 1305 2.505407 TGTTAGTCATAGGCCACTGCAT 59.495 45.455 5.01 0.00 40.13 3.96
1296 1306 3.134458 GTTAGTCATAGGCCACTGCATC 58.866 50.000 5.01 0.00 40.13 3.91
1297 1307 0.471617 AGTCATAGGCCACTGCATCC 59.528 55.000 5.01 0.00 40.13 3.51
1298 1308 0.882042 GTCATAGGCCACTGCATCCG 60.882 60.000 5.01 0.00 40.13 4.18
1299 1309 1.146930 CATAGGCCACTGCATCCGT 59.853 57.895 5.01 0.00 40.13 4.69
1300 1310 0.464373 CATAGGCCACTGCATCCGTT 60.464 55.000 5.01 0.00 40.13 4.44
1301 1311 0.255890 ATAGGCCACTGCATCCGTTT 59.744 50.000 5.01 0.00 40.13 3.60
1302 1312 0.392461 TAGGCCACTGCATCCGTTTC 60.392 55.000 5.01 0.00 40.13 2.78
1303 1313 2.480555 GCCACTGCATCCGTTTCG 59.519 61.111 0.00 0.00 37.47 3.46
1304 1314 3.039202 GCCACTGCATCCGTTTCGG 62.039 63.158 1.45 1.45 42.54 4.30
1369 1387 5.689068 GCTGCTGAAATAATGGACTATTTGC 59.311 40.000 0.00 0.00 32.77 3.68
1370 1388 6.681120 GCTGCTGAAATAATGGACTATTTGCA 60.681 38.462 0.00 0.00 32.77 4.08
1381 1399 4.065088 GGACTATTTGCACACTCTGTTCA 58.935 43.478 0.00 0.00 0.00 3.18
1389 1407 2.350197 GCACACTCTGTTCATCAACTGC 60.350 50.000 0.00 0.00 32.77 4.40
1399 1417 3.525268 TCATCAACTGCGCATCTTAGA 57.475 42.857 12.24 5.54 0.00 2.10
1431 1502 3.672808 ACCAACATGAAGAAGAGCTCTG 58.327 45.455 19.06 6.14 33.37 3.35
1432 1503 2.419324 CCAACATGAAGAAGAGCTCTGC 59.581 50.000 19.06 16.74 33.37 4.26
1434 1505 1.907936 ACATGAAGAAGAGCTCTGCCT 59.092 47.619 19.06 14.75 33.37 4.75
1447 1529 3.881688 AGCTCTGCCTACAAGCATTATTG 59.118 43.478 0.00 0.00 43.09 1.90
1459 1541 2.173964 GCATTATTGCGACGTGAAACC 58.826 47.619 0.00 0.00 39.49 3.27
1467 1549 1.389106 GCGACGTGAAACCTGATGTAC 59.611 52.381 0.00 0.00 0.00 2.90
1473 1555 6.535274 ACGTGAAACCTGATGTACTAAAAC 57.465 37.500 0.00 0.00 0.00 2.43
1474 1556 6.050432 ACGTGAAACCTGATGTACTAAAACA 58.950 36.000 0.00 0.00 0.00 2.83
1475 1557 6.018507 ACGTGAAACCTGATGTACTAAAACAC 60.019 38.462 0.00 0.00 30.75 3.32
1476 1558 6.018588 CGTGAAACCTGATGTACTAAAACACA 60.019 38.462 0.00 0.00 30.75 3.72
1478 1560 7.012044 GTGAAACCTGATGTACTAAAACACAGT 59.988 37.037 0.00 0.00 31.89 3.55
1479 1561 8.205512 TGAAACCTGATGTACTAAAACACAGTA 58.794 33.333 0.00 0.00 31.89 2.74
1480 1562 8.603242 AAACCTGATGTACTAAAACACAGTAG 57.397 34.615 0.00 0.00 31.89 2.57
1541 1628 9.406828 GAAACTAAAAATATTCATATTCCGGCC 57.593 33.333 0.00 0.00 32.08 6.13
1542 1629 7.462571 ACTAAAAATATTCATATTCCGGCCC 57.537 36.000 0.00 0.00 32.08 5.80
1543 1630 5.738619 AAAAATATTCATATTCCGGCCCC 57.261 39.130 0.00 0.00 32.08 5.80
1544 1631 4.675063 AAATATTCATATTCCGGCCCCT 57.325 40.909 0.00 0.00 32.08 4.79
1546 1633 5.373812 AATATTCATATTCCGGCCCCTAG 57.626 43.478 0.00 0.00 0.00 3.02
1547 1634 2.112279 TTCATATTCCGGCCCCTAGT 57.888 50.000 0.00 0.00 0.00 2.57
1548 1635 1.640917 TCATATTCCGGCCCCTAGTC 58.359 55.000 0.00 0.00 0.00 2.59
1549 1636 0.246635 CATATTCCGGCCCCTAGTCG 59.753 60.000 0.00 0.00 0.00 4.18
1558 1645 1.439679 GCCCCTAGTCGTTTCACTTG 58.560 55.000 0.00 0.00 0.00 3.16
1576 1698 3.209410 CTTGTTGTGGAGAGAAGCAAGT 58.791 45.455 0.00 0.00 0.00 3.16
1612 1734 7.554118 CCACTTAATGACAACTGAATCATACCT 59.446 37.037 0.00 0.00 34.41 3.08
1692 1814 6.263516 AGATTTCCACATCACATCAAACTG 57.736 37.500 0.00 0.00 0.00 3.16
1727 1850 9.812347 ATAATGTCCAGGAATTATTGCATTCTA 57.188 29.630 0.00 0.00 34.12 2.10
1769 1892 1.111277 GACCACAGGTGCCAGTTTTT 58.889 50.000 0.00 0.00 35.25 1.94
1797 1924 2.293122 TGTTAATGAGCACACTGTTGCC 59.707 45.455 10.06 4.81 44.14 4.52
1798 1925 2.268762 TAATGAGCACACTGTTGCCA 57.731 45.000 10.06 8.79 44.14 4.92
1829 2191 9.681062 TTCCAGTAATATCTACCAAGGAAAAAG 57.319 33.333 0.00 0.00 30.37 2.27
1833 2196 8.495260 AGTAATATCTACCAAGGAAAAAGAGGG 58.505 37.037 0.00 0.00 0.00 4.30
1834 2197 3.434940 TCTACCAAGGAAAAAGAGGGC 57.565 47.619 0.00 0.00 0.00 5.19
1837 2200 1.260544 CCAAGGAAAAAGAGGGCCAG 58.739 55.000 6.18 0.00 0.00 4.85
1838 2201 1.481242 CCAAGGAAAAAGAGGGCCAGT 60.481 52.381 6.18 0.00 0.00 4.00
1839 2202 2.225017 CCAAGGAAAAAGAGGGCCAGTA 60.225 50.000 6.18 0.00 0.00 2.74
1841 2204 3.156288 AGGAAAAAGAGGGCCAGTAAC 57.844 47.619 6.18 0.00 0.00 2.50
1845 2208 3.306472 AAAAGAGGGCCAGTAACACAA 57.694 42.857 6.18 0.00 0.00 3.33
1875 2240 9.110502 CAGAAACTAGGAAAACTATGAATACCC 57.889 37.037 0.00 0.00 0.00 3.69
1926 2309 4.745620 GCTATCCTAATGTCTGGACGAAAC 59.254 45.833 0.00 0.00 34.90 2.78
1935 2318 9.961265 CTAATGTCTGGACGAAACAACTATATA 57.039 33.333 0.00 0.00 0.00 0.86
2016 2442 3.483808 TTACATTCCACTCTGTGCACA 57.516 42.857 20.37 20.37 31.34 4.57
2053 2479 1.742268 GAGCCATCAAGAGGAAGCAAC 59.258 52.381 0.00 0.00 32.74 4.17
2149 2580 7.192148 TCGCTCTTCTAGATACTGTTCATAC 57.808 40.000 0.00 0.00 0.00 2.39
2191 2622 2.324014 AAACACACAGCTCCGGCAGA 62.324 55.000 0.00 0.00 41.70 4.26
2511 3040 6.459710 GCATTGCCTCCATAGTTAAAACCTAC 60.460 42.308 0.00 0.00 0.00 3.18
2530 3059 1.536662 GGGTGGAGAGAGGTGGTGT 60.537 63.158 0.00 0.00 0.00 4.16
2604 3133 3.475575 TGTGCTACAAGAAGTTGATGCA 58.524 40.909 0.00 0.00 40.37 3.96
2643 3172 1.541588 GTGATCCCTTTGTCAGCAACC 59.458 52.381 0.00 0.00 33.82 3.77
2677 3206 9.974980 AAATTACTCTAGAACTCTATAAGCTGC 57.025 33.333 0.00 0.00 0.00 5.25
2739 3268 0.701147 CCTTGGCCTCCCTCTTCTTT 59.299 55.000 3.32 0.00 0.00 2.52
2964 3493 4.175516 CAACCGATCCACCATTGAAATTG 58.824 43.478 0.00 0.00 0.00 2.32
2985 3514 3.849574 TGAACATCTTTGGACTATGGGGA 59.150 43.478 0.00 0.00 0.00 4.81
3032 3561 1.732917 CCGCAGCAAAAGTTGGACA 59.267 52.632 0.00 0.00 0.00 4.02
3076 3605 2.029649 CCAGGTGCCACAAGAAATTCAG 60.030 50.000 0.00 0.00 0.00 3.02
3104 3633 6.609616 AGTTTGGAAACCTTGGAAACATCTAA 59.390 34.615 0.00 0.00 38.99 2.10
3249 3778 7.237255 GGAAAGGATGGAGAGATATTGGATTT 58.763 38.462 0.00 0.00 0.00 2.17
3255 3784 6.325993 TGGAGAGATATTGGATTTTGGACA 57.674 37.500 0.00 0.00 0.00 4.02
3296 3825 5.003402 CGCAGCAATTAAATAAAACCAGACG 59.997 40.000 0.00 0.00 0.00 4.18
3370 3917 2.504175 CCCCGAGGTTTTGAGATTCCTA 59.496 50.000 0.00 0.00 0.00 2.94
3417 3964 2.039613 TGTGTGCACAAGTGGATATCCA 59.960 45.455 23.59 20.98 40.24 3.41
3638 4186 7.451731 AGATTTCAAGTCCTATGTATTCCCA 57.548 36.000 0.00 0.00 0.00 4.37
3705 4253 4.991153 TGAAACCAAACTTGCACACATA 57.009 36.364 0.00 0.00 0.00 2.29
3706 4254 4.677584 TGAAACCAAACTTGCACACATAC 58.322 39.130 0.00 0.00 0.00 2.39
3707 4255 4.158579 TGAAACCAAACTTGCACACATACA 59.841 37.500 0.00 0.00 0.00 2.29
3709 4257 4.503741 ACCAAACTTGCACACATACATC 57.496 40.909 0.00 0.00 0.00 3.06
3710 4258 4.144297 ACCAAACTTGCACACATACATCT 58.856 39.130 0.00 0.00 0.00 2.90
3711 4259 4.584325 ACCAAACTTGCACACATACATCTT 59.416 37.500 0.00 0.00 0.00 2.40
3712 4260 4.919168 CCAAACTTGCACACATACATCTTG 59.081 41.667 0.00 0.00 0.00 3.02
3714 4262 5.618056 AACTTGCACACATACATCTTGAG 57.382 39.130 0.00 0.00 0.00 3.02
3715 4263 4.005650 ACTTGCACACATACATCTTGAGG 58.994 43.478 0.00 0.00 0.00 3.86
3716 4264 3.701205 TGCACACATACATCTTGAGGT 57.299 42.857 0.00 0.00 0.00 3.85
3717 4265 4.817318 TGCACACATACATCTTGAGGTA 57.183 40.909 0.00 0.00 0.00 3.08
3718 4266 4.503910 TGCACACATACATCTTGAGGTAC 58.496 43.478 0.00 0.00 0.00 3.34
3719 4267 3.551890 GCACACATACATCTTGAGGTACG 59.448 47.826 0.00 0.00 0.00 3.67
3720 4268 4.676986 GCACACATACATCTTGAGGTACGA 60.677 45.833 0.00 0.00 0.00 3.43
3721 4269 5.407502 CACACATACATCTTGAGGTACGAA 58.592 41.667 0.00 0.00 0.00 3.85
3722 4270 5.867174 CACACATACATCTTGAGGTACGAAA 59.133 40.000 0.00 0.00 0.00 3.46
3723 4271 6.035005 CACACATACATCTTGAGGTACGAAAG 59.965 42.308 0.00 0.00 0.00 2.62
3724 4272 6.071560 ACACATACATCTTGAGGTACGAAAGA 60.072 38.462 6.12 6.12 38.58 2.52
3725 4273 6.980978 CACATACATCTTGAGGTACGAAAGAT 59.019 38.462 9.36 9.36 42.92 2.40
3726 4274 7.492669 CACATACATCTTGAGGTACGAAAGATT 59.507 37.037 11.52 7.85 41.21 2.40
3727 4275 8.041323 ACATACATCTTGAGGTACGAAAGATTT 58.959 33.333 11.52 9.30 41.21 2.17
3728 4276 6.969828 ACATCTTGAGGTACGAAAGATTTC 57.030 37.500 11.52 0.00 41.21 2.17
3729 4277 6.464222 ACATCTTGAGGTACGAAAGATTTCA 58.536 36.000 11.52 0.00 41.21 2.69
3730 4278 6.934645 ACATCTTGAGGTACGAAAGATTTCAA 59.065 34.615 11.52 0.00 41.21 2.69
3731 4279 7.118390 ACATCTTGAGGTACGAAAGATTTCAAG 59.882 37.037 11.52 5.26 41.21 3.02
3736 4284 6.368791 TGAGGTACGAAAGATTTCAAGTCATG 59.631 38.462 6.16 0.00 37.01 3.07
3743 4291 8.567948 ACGAAAGATTTCAAGTCATGTGTATTT 58.432 29.630 6.16 0.00 37.01 1.40
3782 4330 9.649167 TCTTTAGTTAGTATAAACAGTTGAGGC 57.351 33.333 0.00 0.00 0.00 4.70
3784 4332 6.622427 AGTTAGTATAAACAGTTGAGGCCT 57.378 37.500 3.86 3.86 0.00 5.19
3785 4333 7.729124 AGTTAGTATAAACAGTTGAGGCCTA 57.271 36.000 4.42 0.00 0.00 3.93
3786 4334 7.554211 AGTTAGTATAAACAGTTGAGGCCTAC 58.446 38.462 4.42 0.00 0.00 3.18
3787 4335 5.354842 AGTATAAACAGTTGAGGCCTACC 57.645 43.478 4.42 0.00 0.00 3.18
3788 4336 3.646736 ATAAACAGTTGAGGCCTACCC 57.353 47.619 4.42 0.00 36.11 3.69
3789 4337 1.145571 AAACAGTTGAGGCCTACCCA 58.854 50.000 4.42 0.00 36.11 4.51
3790 4338 1.145571 AACAGTTGAGGCCTACCCAA 58.854 50.000 4.42 2.49 36.11 4.12
3791 4339 0.400594 ACAGTTGAGGCCTACCCAAC 59.599 55.000 22.29 22.29 42.68 3.77
3792 4340 3.182105 AGTTGAGGCCTACCCAACT 57.818 52.632 25.30 25.30 45.21 3.16
3793 4341 1.073923 CAGTTGAGGCCTACCCAACTT 59.926 52.381 27.37 15.02 46.57 2.66
3794 4342 1.073923 AGTTGAGGCCTACCCAACTTG 59.926 52.381 25.30 0.00 46.57 3.16
3795 4343 1.145571 TTGAGGCCTACCCAACTTGT 58.854 50.000 4.42 0.00 36.11 3.16
3796 4344 1.145571 TGAGGCCTACCCAACTTGTT 58.854 50.000 4.42 0.00 36.11 2.83
3797 4345 1.497286 TGAGGCCTACCCAACTTGTTT 59.503 47.619 4.42 0.00 36.11 2.83
3798 4346 1.886542 GAGGCCTACCCAACTTGTTTG 59.113 52.381 4.42 0.00 36.11 2.93
3810 4358 5.213891 CAACTTGTTTGGGATAAAAGGCT 57.786 39.130 0.00 0.00 0.00 4.58
3811 4359 5.610398 CAACTTGTTTGGGATAAAAGGCTT 58.390 37.500 0.00 0.00 0.00 4.35
3812 4360 5.468540 ACTTGTTTGGGATAAAAGGCTTC 57.531 39.130 0.00 0.00 0.00 3.86
3813 4361 4.022329 ACTTGTTTGGGATAAAAGGCTTCG 60.022 41.667 0.00 0.00 0.00 3.79
3814 4362 3.492337 TGTTTGGGATAAAAGGCTTCGT 58.508 40.909 0.00 0.00 0.00 3.85
3815 4363 4.653868 TGTTTGGGATAAAAGGCTTCGTA 58.346 39.130 0.00 0.00 0.00 3.43
3816 4364 5.071370 TGTTTGGGATAAAAGGCTTCGTAA 58.929 37.500 0.00 0.00 0.00 3.18
3817 4365 5.182380 TGTTTGGGATAAAAGGCTTCGTAAG 59.818 40.000 0.00 0.00 0.00 2.34
3818 4366 4.563140 TGGGATAAAAGGCTTCGTAAGT 57.437 40.909 0.00 0.00 39.48 2.24
3819 4367 5.680594 TGGGATAAAAGGCTTCGTAAGTA 57.319 39.130 0.00 0.00 39.48 2.24
3820 4368 6.052405 TGGGATAAAAGGCTTCGTAAGTAA 57.948 37.500 0.00 0.00 39.48 2.24
3821 4369 6.110707 TGGGATAAAAGGCTTCGTAAGTAAG 58.889 40.000 0.00 0.00 39.48 2.34
3822 4370 6.111382 GGGATAAAAGGCTTCGTAAGTAAGT 58.889 40.000 0.00 0.00 39.48 2.24
3823 4371 7.093377 TGGGATAAAAGGCTTCGTAAGTAAGTA 60.093 37.037 0.00 0.00 39.48 2.24
3824 4372 7.765819 GGGATAAAAGGCTTCGTAAGTAAGTAA 59.234 37.037 0.00 0.00 39.48 2.24
3825 4373 8.815189 GGATAAAAGGCTTCGTAAGTAAGTAAG 58.185 37.037 0.00 0.00 39.48 2.34
3826 4374 9.363763 GATAAAAGGCTTCGTAAGTAAGTAAGT 57.636 33.333 0.00 0.00 39.48 2.24
3829 4377 8.754230 AAAGGCTTCGTAAGTAAGTAAGTAAG 57.246 34.615 0.00 0.00 39.48 2.34
3830 4378 7.459795 AGGCTTCGTAAGTAAGTAAGTAAGT 57.540 36.000 0.00 0.00 39.48 2.24
3831 4379 8.567285 AGGCTTCGTAAGTAAGTAAGTAAGTA 57.433 34.615 0.00 0.00 39.48 2.24
3832 4380 9.014297 AGGCTTCGTAAGTAAGTAAGTAAGTAA 57.986 33.333 0.00 0.00 39.48 2.24
3833 4381 9.283420 GGCTTCGTAAGTAAGTAAGTAAGTAAG 57.717 37.037 0.00 0.00 39.48 2.34
3834 4382 9.833182 GCTTCGTAAGTAAGTAAGTAAGTAAGT 57.167 33.333 0.00 0.00 39.48 2.24
3868 4416 2.040278 ACAGTTGAGGCCTTGAAGCATA 59.960 45.455 6.77 0.00 0.00 3.14
3871 4419 3.760684 AGTTGAGGCCTTGAAGCATAAAG 59.239 43.478 6.77 0.00 0.00 1.85
3872 4420 2.726821 TGAGGCCTTGAAGCATAAAGG 58.273 47.619 6.77 0.18 44.92 3.11
3875 4423 2.041620 AGGCCTTGAAGCATAAAGGTGA 59.958 45.455 0.00 0.00 44.13 4.02
3876 4424 2.825532 GGCCTTGAAGCATAAAGGTGAA 59.174 45.455 6.93 0.00 44.13 3.18
3877 4425 3.367395 GGCCTTGAAGCATAAAGGTGAAC 60.367 47.826 6.93 0.00 44.13 3.18
3878 4426 3.507622 GCCTTGAAGCATAAAGGTGAACT 59.492 43.478 6.93 0.00 44.13 3.01
3879 4427 4.021981 GCCTTGAAGCATAAAGGTGAACTT 60.022 41.667 6.93 0.00 44.13 2.66
3895 4443 9.516546 AAGGTGAACTTTTTCCTACTATAAAGG 57.483 33.333 0.00 0.00 35.35 3.11
3896 4444 8.666821 AGGTGAACTTTTTCCTACTATAAAGGT 58.333 33.333 0.00 0.00 35.48 3.50
3897 4445 9.293404 GGTGAACTTTTTCCTACTATAAAGGTT 57.707 33.333 0.00 0.00 34.90 3.50
3947 4557 9.582648 AAAGGTTTCCACACAATACTATAAAGT 57.417 29.630 0.00 0.00 39.91 2.66
3991 4601 4.931661 TCTTCACTACTTTTGAGGACGT 57.068 40.909 0.00 0.00 0.00 4.34
3993 4603 5.667466 TCTTCACTACTTTTGAGGACGTTT 58.333 37.500 0.00 0.00 0.00 3.60
3995 4605 5.978934 TCACTACTTTTGAGGACGTTTTC 57.021 39.130 0.00 0.00 0.00 2.29
3996 4606 5.421277 TCACTACTTTTGAGGACGTTTTCA 58.579 37.500 0.00 0.00 0.00 2.69
3997 4607 6.053005 TCACTACTTTTGAGGACGTTTTCAT 58.947 36.000 4.12 0.00 0.00 2.57
3999 4609 6.851330 CACTACTTTTGAGGACGTTTTCATTC 59.149 38.462 4.12 0.00 0.00 2.67
4002 4612 2.940994 TGAGGACGTTTTCATTCCCA 57.059 45.000 0.00 0.00 0.00 4.37
4040 4661 6.971756 CCTGTTCATATATGCTAGTCTCATCG 59.028 42.308 7.92 0.00 0.00 3.84
4043 4664 7.174946 TGTTCATATATGCTAGTCTCATCGTCA 59.825 37.037 7.92 0.00 0.00 4.35
4083 4704 1.888512 AGCAACCAACCTAAGCATGTG 59.111 47.619 0.00 0.00 0.00 3.21
4089 4710 4.603131 ACCAACCTAAGCATGTGAATGAT 58.397 39.130 0.00 0.00 0.00 2.45
4289 5434 7.959689 TTTCTATCTGCTCAGCTAATGATTC 57.040 36.000 0.00 0.00 37.28 2.52
4407 5552 5.008415 CACAGAATCAGGAATAGCAATGGTC 59.992 44.000 0.00 0.00 0.00 4.02
4488 5633 2.562298 TGGAATGTGGTTTGGAAGCATC 59.438 45.455 0.00 0.00 41.44 3.91
4551 5696 5.291371 GGAGTTTCTAGGCAATAACGAGAAC 59.709 44.000 0.00 0.00 30.93 3.01
4629 5774 5.048921 TGAAGAGAGTTGAGTACACTTACCG 60.049 44.000 0.00 0.00 0.00 4.02
4635 5780 6.432162 AGAGTTGAGTACACTTACCGTGATAA 59.568 38.462 0.00 0.00 46.81 1.75
4644 5789 7.316544 ACACTTACCGTGATAAATCCATTTC 57.683 36.000 0.00 0.00 46.81 2.17
4689 5835 8.243961 AGAGCATTTAGTATCAAGCTAAGAGA 57.756 34.615 0.00 0.00 31.61 3.10
4705 5851 4.399004 AAGAGATCTGAATGGGAAGACG 57.601 45.455 0.00 0.00 0.00 4.18
4706 5852 2.697751 AGAGATCTGAATGGGAAGACGG 59.302 50.000 0.00 0.00 0.00 4.79
4723 5869 3.961408 AGACGGTTATAGAAGCCTGATGT 59.039 43.478 0.00 0.00 0.00 3.06
4730 5876 7.924412 CGGTTATAGAAGCCTGATGTAACTAAA 59.076 37.037 0.00 0.00 0.00 1.85
4837 6008 8.406297 TGATAGCTCATTACAACACTGTAGTAG 58.594 37.037 0.00 0.00 39.21 2.57
4841 6016 9.137459 AGCTCATTACAACACTGTAGTAGATAT 57.863 33.333 0.00 0.00 39.21 1.63
4877 6052 9.547753 TTTCATATGCACTAAATAGAGGAGAAC 57.452 33.333 0.00 0.00 0.00 3.01
4881 6056 7.856145 ATGCACTAAATAGAGGAGAACAAAG 57.144 36.000 0.00 0.00 0.00 2.77
4943 6148 3.843999 TGTTGTGGTTTTCAACTTCAGC 58.156 40.909 9.57 0.00 43.54 4.26
4950 6155 1.512926 TTTCAACTTCAGCCTCGAGC 58.487 50.000 6.99 2.54 44.25 5.03
5263 6469 6.879367 AATTCCCCTGATGATTTTCACAAT 57.121 33.333 0.00 0.00 0.00 2.71
5410 6616 5.102313 GCAGGTTTTGGATATGTAAGTTGC 58.898 41.667 0.00 0.00 0.00 4.17
5444 6656 2.974165 CGCTTTCGCACAATATCCTTC 58.026 47.619 0.00 0.00 35.30 3.46
5449 6661 5.523916 GCTTTCGCACAATATCCTTCTAGAA 59.476 40.000 4.81 4.81 35.78 2.10
5486 6698 5.843969 AGTTAACCAATTTGTTTCCCCAGAT 59.156 36.000 0.88 0.00 0.00 2.90
5493 6709 8.224025 ACCAATTTGTTTCCCCAGATAAAAATT 58.776 29.630 0.00 0.00 0.00 1.82
5498 6714 8.785329 TTGTTTCCCCAGATAAAAATTAATGC 57.215 30.769 0.00 0.00 0.00 3.56
5499 6715 7.334858 TGTTTCCCCAGATAAAAATTAATGCC 58.665 34.615 0.00 0.00 0.00 4.40
5500 6716 5.782893 TCCCCAGATAAAAATTAATGCCG 57.217 39.130 0.00 0.00 0.00 5.69
5515 6731 0.815213 TGCCGGCTAGCAATCACATC 60.815 55.000 29.70 0.00 40.56 3.06
5522 6738 3.677121 GGCTAGCAATCACATCAGATACG 59.323 47.826 18.24 0.00 0.00 3.06
5540 6756 9.692749 TCAGATACGTTTGAACATCCTATAATC 57.307 33.333 0.00 0.00 0.00 1.75
5620 6857 5.300752 CGTAGCCAGATGGATTACTGAAAT 58.699 41.667 2.18 0.00 37.39 2.17
5622 6859 5.121380 AGCCAGATGGATTACTGAAATGT 57.879 39.130 2.18 0.00 37.39 2.71
5624 6861 5.591877 AGCCAGATGGATTACTGAAATGTTC 59.408 40.000 2.18 0.00 37.39 3.18
5628 6865 8.186821 CCAGATGGATTACTGAAATGTTCTTTC 58.813 37.037 0.00 0.00 37.39 2.62
5635 6872 5.597813 ACTGAAATGTTCTTTCACTAGCG 57.402 39.130 0.00 0.00 34.96 4.26
5638 6875 5.747565 TGAAATGTTCTTTCACTAGCGTTG 58.252 37.500 0.00 0.00 33.90 4.10
5655 6892 8.639761 ACTAGCGTTGATACTAAGTCCAATTAT 58.360 33.333 0.00 0.00 0.00 1.28
5700 6938 4.176271 TGCATCAGACAAGACAAGATACG 58.824 43.478 0.00 0.00 0.00 3.06
5704 6942 3.056821 TCAGACAAGACAAGATACGGTGG 60.057 47.826 0.00 0.00 0.00 4.61
5719 6957 1.270839 CGGTGGTGTCTGTTCTCCATT 60.271 52.381 0.00 0.00 34.29 3.16
5840 7088 4.594920 ACTGGGGGTGATACTATGATTCAG 59.405 45.833 0.00 0.00 0.00 3.02
6021 7269 2.763249 AAAGAAGCGCAAGTCAACAG 57.237 45.000 11.47 0.00 41.68 3.16
6094 7342 4.336280 GAAAATAGTGAGGCCCAAGAAGT 58.664 43.478 0.00 0.00 0.00 3.01
6129 7539 5.003692 TGAACAAAATACACAGCAAGCAA 57.996 34.783 0.00 0.00 0.00 3.91
6136 7546 2.599578 ACAGCAAGCAAGCCAGGG 60.600 61.111 0.00 0.00 34.23 4.45
6137 7547 2.599578 CAGCAAGCAAGCCAGGGT 60.600 61.111 0.00 0.00 34.23 4.34
6160 7573 4.821805 TGAAAGTGGGCTAGAAGAACAAAG 59.178 41.667 0.00 0.00 0.00 2.77
6248 7675 5.704053 ACTGTCGTTTTCAGGGGTAAAATAG 59.296 40.000 0.00 0.00 37.25 1.73
6291 7718 1.996191 GGAACTCATCTGACGTTCAGC 59.004 52.381 16.85 0.00 43.95 4.26
6452 9044 8.339344 TGCAGAATCTCATTTTATTTGACTGA 57.661 30.769 0.00 0.00 0.00 3.41
6577 9208 8.756927 TGATCCCTGCAATTTCAACAATTTATA 58.243 29.630 0.00 0.00 0.00 0.98
6637 11352 7.040617 GGTGTCATGAGATATTGATTGAATGCT 60.041 37.037 0.00 0.00 0.00 3.79
6806 11543 3.840666 TGGAAACCTTCTAGCTGATCAGT 59.159 43.478 23.38 12.80 0.00 3.41
6819 11556 6.047511 AGCTGATCAGTGTTGAAGATAACT 57.952 37.500 23.38 4.85 36.78 2.24
6888 11630 3.260632 TCCACGTTTCTGATCCTTCATGA 59.739 43.478 0.00 0.00 0.00 3.07
6922 11664 7.363443 CCCCTTTTGAACTTTCTACTTGTCAAA 60.363 37.037 0.00 0.00 0.00 2.69
6942 11684 6.588373 GTCAAACACTTAAGTTTTCAAGCCAA 59.412 34.615 5.07 0.00 39.55 4.52
6943 11685 6.588373 TCAAACACTTAAGTTTTCAAGCCAAC 59.412 34.615 5.07 0.00 39.55 3.77
7079 11822 5.791336 TCAGGTGCATTATAGAGTACTGG 57.209 43.478 0.00 0.00 0.00 4.00
7159 11902 6.072893 TCCTGCGACTTACCAAAAGTTTTATC 60.073 38.462 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.088762 CACGATGGCGGTGTGTGC 62.089 66.667 0.00 0.00 43.17 4.57
32 33 2.664851 ACACGATGGCGGTGTGTG 60.665 61.111 7.81 1.58 44.59 3.82
61 62 3.470567 GTTCGTCTGCAGCGACCG 61.471 66.667 25.65 17.07 38.14 4.79
62 63 3.112709 GGTTCGTCTGCAGCGACC 61.113 66.667 25.65 23.72 38.14 4.79
63 64 3.470567 CGGTTCGTCTGCAGCGAC 61.471 66.667 25.65 20.45 38.14 5.19
132 133 4.308458 TCTCGCGTGGTGGGGTTG 62.308 66.667 5.77 0.00 0.00 3.77
133 134 4.003788 CTCTCGCGTGGTGGGGTT 62.004 66.667 5.77 0.00 0.00 4.11
136 137 4.436998 GTCCTCTCGCGTGGTGGG 62.437 72.222 5.77 7.64 0.00 4.61
137 138 4.778415 CGTCCTCTCGCGTGGTGG 62.778 72.222 5.77 10.22 0.00 4.61
138 139 3.669036 CTCGTCCTCTCGCGTGGTG 62.669 68.421 5.77 0.37 0.00 4.17
139 140 3.432588 CTCGTCCTCTCGCGTGGT 61.433 66.667 5.77 0.00 0.00 4.16
140 141 4.180946 CCTCGTCCTCTCGCGTGG 62.181 72.222 5.77 7.64 35.84 4.94
141 142 2.473760 ATCCTCGTCCTCTCGCGTG 61.474 63.158 5.77 3.13 0.00 5.34
142 143 2.124653 ATCCTCGTCCTCTCGCGT 60.125 61.111 5.77 0.00 0.00 6.01
143 144 2.329690 CATCCTCGTCCTCTCGCG 59.670 66.667 0.00 0.00 0.00 5.87
144 145 2.026879 GCATCCTCGTCCTCTCGC 59.973 66.667 0.00 0.00 0.00 5.03
145 146 2.725008 GGCATCCTCGTCCTCTCG 59.275 66.667 0.00 0.00 0.00 4.04
146 147 2.503382 GGGGCATCCTCGTCCTCTC 61.503 68.421 0.00 0.00 0.00 3.20
147 148 2.444895 GGGGCATCCTCGTCCTCT 60.445 66.667 0.00 0.00 0.00 3.69
148 149 3.917760 CGGGGCATCCTCGTCCTC 61.918 72.222 0.00 0.00 0.00 3.71
213 214 3.610669 CTCCCTCCTCCATCGCCG 61.611 72.222 0.00 0.00 0.00 6.46
214 215 3.237741 CCTCCCTCCTCCATCGCC 61.238 72.222 0.00 0.00 0.00 5.54
215 216 2.123251 TCCTCCCTCCTCCATCGC 60.123 66.667 0.00 0.00 0.00 4.58
216 217 1.532794 CCTCCTCCCTCCTCCATCG 60.533 68.421 0.00 0.00 0.00 3.84
217 218 1.152139 CCCTCCTCCCTCCTCCATC 60.152 68.421 0.00 0.00 0.00 3.51
218 219 2.731461 CCCCTCCTCCCTCCTCCAT 61.731 68.421 0.00 0.00 0.00 3.41
219 220 3.368501 CCCCTCCTCCCTCCTCCA 61.369 72.222 0.00 0.00 0.00 3.86
220 221 3.036959 TCCCCTCCTCCCTCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
221 222 2.612251 CTCCCCTCCTCCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
222 223 3.039526 CCTCCCCTCCTCCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
223 224 4.179599 CCCTCCCCTCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
224 225 4.179599 CCCCTCCCCTCCTCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
225 226 4.761304 TCCCCTCCCCTCCTCCCT 62.761 72.222 0.00 0.00 0.00 4.20
226 227 4.179599 CTCCCCTCCCCTCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
227 228 3.036959 TCTCCCCTCCCCTCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
228 229 2.284151 GTCTCCCCTCCCCTCCTC 59.716 72.222 0.00 0.00 0.00 3.71
229 230 3.369388 GGTCTCCCCTCCCCTCCT 61.369 72.222 0.00 0.00 0.00 3.69
230 231 3.695825 TGGTCTCCCCTCCCCTCC 61.696 72.222 0.00 0.00 0.00 4.30
231 232 2.041405 CTGGTCTCCCCTCCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
232 233 4.423209 GCTGGTCTCCCCTCCCCT 62.423 72.222 0.00 0.00 0.00 4.79
233 234 4.741239 TGCTGGTCTCCCCTCCCC 62.741 72.222 0.00 0.00 0.00 4.81
234 235 3.086600 CTGCTGGTCTCCCCTCCC 61.087 72.222 0.00 0.00 0.00 4.30
235 236 3.791586 GCTGCTGGTCTCCCCTCC 61.792 72.222 0.00 0.00 0.00 4.30
236 237 4.154347 CGCTGCTGGTCTCCCCTC 62.154 72.222 0.00 0.00 0.00 4.30
240 241 4.521062 ATCGCGCTGCTGGTCTCC 62.521 66.667 5.56 0.00 0.00 3.71
241 242 2.064723 TAGATCGCGCTGCTGGTCTC 62.065 60.000 5.56 0.00 0.00 3.36
242 243 2.069465 CTAGATCGCGCTGCTGGTCT 62.069 60.000 5.56 3.11 0.00 3.85
243 244 1.659954 CTAGATCGCGCTGCTGGTC 60.660 63.158 5.56 0.00 0.00 4.02
244 245 2.415010 CTAGATCGCGCTGCTGGT 59.585 61.111 5.56 0.00 0.00 4.00
245 246 2.355599 CCTAGATCGCGCTGCTGG 60.356 66.667 5.56 1.44 0.00 4.85
246 247 2.355599 CCCTAGATCGCGCTGCTG 60.356 66.667 5.56 0.00 0.00 4.41
247 248 2.356818 GAACCCTAGATCGCGCTGCT 62.357 60.000 5.56 1.94 0.00 4.24
248 249 1.951631 GAACCCTAGATCGCGCTGC 60.952 63.158 5.56 0.00 0.00 5.25
249 250 1.300233 GGAACCCTAGATCGCGCTG 60.300 63.158 5.56 0.00 0.00 5.18
250 251 3.130227 GGAACCCTAGATCGCGCT 58.870 61.111 5.56 0.00 0.00 5.92
263 264 2.298661 ATGGTGACGGGGAGGGAAC 61.299 63.158 0.00 0.00 0.00 3.62
264 265 2.124085 ATGGTGACGGGGAGGGAA 59.876 61.111 0.00 0.00 0.00 3.97
265 266 2.687200 CATGGTGACGGGGAGGGA 60.687 66.667 0.00 0.00 0.00 4.20
266 267 4.489771 GCATGGTGACGGGGAGGG 62.490 72.222 0.00 0.00 0.00 4.30
267 268 4.838152 CGCATGGTGACGGGGAGG 62.838 72.222 0.00 0.00 0.00 4.30
268 269 4.838152 CCGCATGGTGACGGGGAG 62.838 72.222 1.89 0.00 45.74 4.30
289 290 3.141488 CTCCTCCCTCCCGTGTCG 61.141 72.222 0.00 0.00 0.00 4.35
290 291 2.760385 CCTCCTCCCTCCCGTGTC 60.760 72.222 0.00 0.00 0.00 3.67
291 292 4.400251 CCCTCCTCCCTCCCGTGT 62.400 72.222 0.00 0.00 0.00 4.49
292 293 3.618855 TTCCCTCCTCCCTCCCGTG 62.619 68.421 0.00 0.00 0.00 4.94
293 294 3.281787 TTCCCTCCTCCCTCCCGT 61.282 66.667 0.00 0.00 0.00 5.28
294 295 2.444895 CTTCCCTCCTCCCTCCCG 60.445 72.222 0.00 0.00 0.00 5.14
295 296 2.040359 CCTTCCCTCCTCCCTCCC 60.040 72.222 0.00 0.00 0.00 4.30
296 297 0.983905 GAACCTTCCCTCCTCCCTCC 60.984 65.000 0.00 0.00 0.00 4.30
297 298 0.043485 AGAACCTTCCCTCCTCCCTC 59.957 60.000 0.00 0.00 0.00 4.30
298 299 0.498685 AAGAACCTTCCCTCCTCCCT 59.501 55.000 0.00 0.00 0.00 4.20
299 300 1.373536 AAAGAACCTTCCCTCCTCCC 58.626 55.000 0.00 0.00 0.00 4.30
300 301 3.527507 AAAAAGAACCTTCCCTCCTCC 57.472 47.619 0.00 0.00 0.00 4.30
319 320 7.942341 AGACATATACAGTCCAAGGTTGAAAAA 59.058 33.333 4.08 0.00 36.68 1.94
320 321 7.390440 CAGACATATACAGTCCAAGGTTGAAAA 59.610 37.037 4.08 0.00 36.68 2.29
321 322 6.878923 CAGACATATACAGTCCAAGGTTGAAA 59.121 38.462 4.08 0.00 36.68 2.69
322 323 6.212589 TCAGACATATACAGTCCAAGGTTGAA 59.787 38.462 4.08 0.00 36.68 2.69
323 324 5.719563 TCAGACATATACAGTCCAAGGTTGA 59.280 40.000 4.08 0.00 36.68 3.18
324 325 5.977635 TCAGACATATACAGTCCAAGGTTG 58.022 41.667 4.08 0.00 36.68 3.77
325 326 6.620877 TTCAGACATATACAGTCCAAGGTT 57.379 37.500 4.08 0.00 36.68 3.50
326 327 5.395768 GCTTCAGACATATACAGTCCAAGGT 60.396 44.000 13.19 0.00 36.68 3.50
327 328 5.053145 GCTTCAGACATATACAGTCCAAGG 58.947 45.833 13.19 0.00 36.68 3.61
328 329 5.053145 GGCTTCAGACATATACAGTCCAAG 58.947 45.833 4.08 7.43 36.68 3.61
329 330 4.469586 TGGCTTCAGACATATACAGTCCAA 59.530 41.667 4.08 0.00 36.68 3.53
330 331 4.030216 TGGCTTCAGACATATACAGTCCA 58.970 43.478 4.08 0.00 36.68 4.02
331 332 4.672587 TGGCTTCAGACATATACAGTCC 57.327 45.455 4.08 0.00 36.68 3.85
332 333 6.095432 AGATGGCTTCAGACATATACAGTC 57.905 41.667 0.00 0.04 45.42 3.51
333 334 7.007116 TCTAGATGGCTTCAGACATATACAGT 58.993 38.462 0.00 0.00 45.42 3.55
334 335 7.312154 GTCTAGATGGCTTCAGACATATACAG 58.688 42.308 18.83 0.00 45.42 2.74
335 336 6.072452 CGTCTAGATGGCTTCAGACATATACA 60.072 42.308 21.23 0.00 45.42 2.29
336 337 6.072397 ACGTCTAGATGGCTTCAGACATATAC 60.072 42.308 16.30 0.00 45.42 1.47
337 338 6.004574 ACGTCTAGATGGCTTCAGACATATA 58.995 40.000 16.30 0.00 45.42 0.86
338 339 4.830046 ACGTCTAGATGGCTTCAGACATAT 59.170 41.667 16.30 0.00 45.42 1.78
339 340 4.207955 ACGTCTAGATGGCTTCAGACATA 58.792 43.478 16.30 1.98 45.42 2.29
341 342 2.447443 ACGTCTAGATGGCTTCAGACA 58.553 47.619 16.30 0.00 37.80 3.41
342 343 3.628487 ACTACGTCTAGATGGCTTCAGAC 59.372 47.826 16.30 16.09 35.20 3.51
343 344 3.887352 ACTACGTCTAGATGGCTTCAGA 58.113 45.455 16.30 1.62 0.00 3.27
344 345 4.096532 TGAACTACGTCTAGATGGCTTCAG 59.903 45.833 16.30 7.37 0.00 3.02
345 346 4.014406 TGAACTACGTCTAGATGGCTTCA 58.986 43.478 16.30 14.50 0.00 3.02
346 347 4.142447 TGTGAACTACGTCTAGATGGCTTC 60.142 45.833 16.30 12.45 0.00 3.86
347 348 3.762288 TGTGAACTACGTCTAGATGGCTT 59.238 43.478 16.30 4.14 0.00 4.35
348 349 3.353557 TGTGAACTACGTCTAGATGGCT 58.646 45.455 16.30 0.00 0.00 4.75
349 350 3.777465 TGTGAACTACGTCTAGATGGC 57.223 47.619 16.30 1.41 0.00 4.40
350 351 6.330278 TCATTTGTGAACTACGTCTAGATGG 58.670 40.000 16.30 4.67 0.00 3.51
351 352 7.812309 TTCATTTGTGAACTACGTCTAGATG 57.188 36.000 10.54 10.54 0.00 2.90
352 353 8.827177 TTTTCATTTGTGAACTACGTCTAGAT 57.173 30.769 0.00 0.00 0.00 1.98
353 354 8.651391 TTTTTCATTTGTGAACTACGTCTAGA 57.349 30.769 0.00 0.00 0.00 2.43
380 381 3.558033 TCTTGGCGAAGGGTTTAGTTTT 58.442 40.909 8.73 0.00 0.00 2.43
381 382 3.146847 CTCTTGGCGAAGGGTTTAGTTT 58.853 45.455 8.73 0.00 0.00 2.66
382 383 2.370849 TCTCTTGGCGAAGGGTTTAGTT 59.629 45.455 8.31 0.00 30.79 2.24
383 384 1.975680 TCTCTTGGCGAAGGGTTTAGT 59.024 47.619 8.31 0.00 30.79 2.24
393 394 3.685139 AGTCAAATCTTCTCTTGGCGA 57.315 42.857 0.00 0.00 32.36 5.54
507 508 1.130054 AGGAGCCAAGGAGTGCTGAA 61.130 55.000 0.00 0.00 38.11 3.02
597 599 3.833650 TCAGGAAAATGCACATGTCCAAT 59.166 39.130 12.04 0.00 31.53 3.16
615 617 5.823045 ACTTTAGTTTGGTTCACTTCTCAGG 59.177 40.000 0.00 0.00 0.00 3.86
641 643 7.228706 GTGATATTCTTTACCCCAACAGGTATG 59.771 40.741 0.00 0.00 42.00 2.39
760 762 2.691011 GGACGTCTTCTCTATTGGCTCT 59.309 50.000 16.46 0.00 0.00 4.09
772 774 0.670854 GGCTTCCACTGGACGTCTTC 60.671 60.000 16.46 0.00 0.00 2.87
780 782 1.197430 AGGTCAGAGGCTTCCACTGG 61.197 60.000 9.76 0.00 41.44 4.00
803 805 0.250124 TTGACGCGTTGTTCCCTCAT 60.250 50.000 15.53 0.00 0.00 2.90
809 811 0.802494 ATCCCATTGACGCGTTGTTC 59.198 50.000 15.53 0.00 0.00 3.18
830 832 5.329191 TGCCTCCTATTGAATGATGGAAT 57.671 39.130 0.00 0.00 0.00 3.01
961 965 3.667497 TGCAGACTCTCCTTACACTTG 57.333 47.619 0.00 0.00 0.00 3.16
1071 1075 1.357991 GCTCCTGTGCTTCTTCGCTC 61.358 60.000 0.00 0.00 0.00 5.03
1074 1078 0.739112 GGAGCTCCTGTGCTTCTTCG 60.739 60.000 26.25 0.00 44.17 3.79
1089 1093 1.215423 AGGATAACCCCAACATGGAGC 59.785 52.381 0.00 0.00 40.96 4.70
1124 1128 0.945265 CCGTGCCATTTTGCCAACAG 60.945 55.000 0.00 0.00 0.00 3.16
1285 1295 2.877691 GAAACGGATGCAGTGGCC 59.122 61.111 0.00 0.00 40.13 5.36
1286 1296 2.480555 CGAAACGGATGCAGTGGC 59.519 61.111 0.00 0.00 41.68 5.01
1313 1323 0.319405 GCTGATGCAGTGGCCTTTTT 59.681 50.000 3.32 0.00 40.13 1.94
1314 1324 0.541296 AGCTGATGCAGTGGCCTTTT 60.541 50.000 3.32 0.00 42.74 2.27
1315 1325 0.964358 GAGCTGATGCAGTGGCCTTT 60.964 55.000 3.32 0.00 42.74 3.11
1316 1326 1.378250 GAGCTGATGCAGTGGCCTT 60.378 57.895 3.32 0.00 42.74 4.35
1317 1327 1.923006 ATGAGCTGATGCAGTGGCCT 61.923 55.000 3.32 0.00 42.74 5.19
1320 1330 1.671328 CAGAATGAGCTGATGCAGTGG 59.329 52.381 0.00 0.00 39.69 4.00
1353 1371 6.886459 ACAGAGTGTGCAAATAGTCCATTATT 59.114 34.615 0.00 0.00 0.00 1.40
1354 1372 6.418101 ACAGAGTGTGCAAATAGTCCATTAT 58.582 36.000 0.00 0.00 0.00 1.28
1355 1373 5.804639 ACAGAGTGTGCAAATAGTCCATTA 58.195 37.500 0.00 0.00 0.00 1.90
1369 1387 2.096565 CGCAGTTGATGAACAGAGTGTG 60.097 50.000 0.00 0.00 34.17 3.82
1370 1388 2.138320 CGCAGTTGATGAACAGAGTGT 58.862 47.619 0.00 0.00 34.17 3.55
1381 1399 5.410746 CCATAATCTAAGATGCGCAGTTGAT 59.589 40.000 18.32 12.36 0.00 2.57
1389 1407 4.452455 GGTTCACCCATAATCTAAGATGCG 59.548 45.833 0.00 0.00 0.00 4.73
1399 1417 5.579047 TCTTCATGTTGGTTCACCCATAAT 58.421 37.500 0.00 0.00 44.74 1.28
1413 1484 2.305343 AGGCAGAGCTCTTCTTCATGTT 59.695 45.455 15.27 0.00 32.41 2.71
1447 1529 1.389106 GTACATCAGGTTTCACGTCGC 59.611 52.381 0.00 0.00 0.00 5.19
1534 1621 1.891722 GAAACGACTAGGGGCCGGAA 61.892 60.000 5.05 0.00 0.00 4.30
1537 1624 1.447314 GTGAAACGACTAGGGGCCG 60.447 63.158 0.00 0.00 0.00 6.13
1538 1625 0.323957 AAGTGAAACGACTAGGGGCC 59.676 55.000 0.00 0.00 45.86 5.80
1539 1626 1.270678 ACAAGTGAAACGACTAGGGGC 60.271 52.381 0.00 0.00 45.86 5.80
1540 1627 2.806244 CAACAAGTGAAACGACTAGGGG 59.194 50.000 0.00 0.00 45.86 4.79
1541 1628 3.463944 ACAACAAGTGAAACGACTAGGG 58.536 45.455 0.00 0.00 45.86 3.53
1558 1645 4.574828 TGTTTACTTGCTTCTCTCCACAAC 59.425 41.667 0.00 0.00 0.00 3.32
1576 1698 7.001674 AGTTGTCATTAAGTGGGTCATGTTTA 58.998 34.615 0.00 0.00 0.00 2.01
1612 1734 7.446769 TCAGTTGCTTCCTAATTGTACTTGTA 58.553 34.615 0.00 0.00 0.00 2.41
1663 1785 7.337480 TGATGTGATGTGGAAATCTAATTGG 57.663 36.000 0.00 0.00 0.00 3.16
1669 1791 5.771666 ACAGTTTGATGTGATGTGGAAATCT 59.228 36.000 0.00 0.00 30.46 2.40
1692 1814 7.410120 AATTCCTGGACATTATCTTTGGAAC 57.590 36.000 0.00 0.00 34.90 3.62
1727 1850 2.244510 TGATGCAATACCCCTGGTGAAT 59.755 45.455 0.00 0.00 36.19 2.57
1797 1924 7.928706 CCTTGGTAGATATTACTGGAAGAACTG 59.071 40.741 0.00 0.00 37.43 3.16
1798 1925 7.844779 TCCTTGGTAGATATTACTGGAAGAACT 59.155 37.037 0.00 0.00 37.43 3.01
1803 1930 9.681062 CTTTTTCCTTGGTAGATATTACTGGAA 57.319 33.333 0.00 0.00 0.00 3.53
1804 1931 9.053472 TCTTTTTCCTTGGTAGATATTACTGGA 57.947 33.333 0.00 0.00 0.00 3.86
1805 1932 9.331282 CTCTTTTTCCTTGGTAGATATTACTGG 57.669 37.037 0.00 0.00 0.00 4.00
1829 2191 1.202348 GCATTTGTGTTACTGGCCCTC 59.798 52.381 0.00 0.00 0.00 4.30
1833 2196 3.641437 TTCTGCATTTGTGTTACTGGC 57.359 42.857 0.00 0.00 0.00 4.85
1834 2197 5.186996 AGTTTCTGCATTTGTGTTACTGG 57.813 39.130 0.00 0.00 0.00 4.00
1837 2200 6.554334 TCCTAGTTTCTGCATTTGTGTTAC 57.446 37.500 0.00 0.00 0.00 2.50
1838 2201 7.575414 TTTCCTAGTTTCTGCATTTGTGTTA 57.425 32.000 0.00 0.00 0.00 2.41
1839 2202 6.463995 TTTCCTAGTTTCTGCATTTGTGTT 57.536 33.333 0.00 0.00 0.00 3.32
1841 2204 6.507023 AGTTTTCCTAGTTTCTGCATTTGTG 58.493 36.000 0.00 0.00 0.00 3.33
1845 2208 8.635765 TTCATAGTTTTCCTAGTTTCTGCATT 57.364 30.769 0.00 0.00 0.00 3.56
1875 2240 2.252260 CTGCTTCCGTGGTTTGCG 59.748 61.111 0.00 0.00 0.00 4.85
1926 2309 8.081208 CTGCAAGTGACAAGGATATATAGTTG 57.919 38.462 5.39 5.39 0.00 3.16
1998 2400 2.346766 TTGTGCACAGAGTGGAATGT 57.653 45.000 20.59 0.00 35.32 2.71
2016 2442 9.466497 TTGATGGCTCTGAAATATTACTTCTTT 57.534 29.630 0.00 0.00 0.00 2.52
2081 2512 7.910441 AAATAGTTGCCTGATTTCCAATTTG 57.090 32.000 0.00 0.00 0.00 2.32
2149 2580 5.375417 TCAGAAATGTTGCCACTTACATG 57.625 39.130 0.00 0.00 35.29 3.21
2246 2775 5.748592 AGACAAACTTTAGTTGAACATCGC 58.251 37.500 0.00 0.00 38.44 4.58
2511 3040 2.283966 ACCACCTCTCTCCACCCG 60.284 66.667 0.00 0.00 0.00 5.28
2530 3059 9.593565 ACCATATTCAGTGTCTTCATAGATAGA 57.406 33.333 0.00 0.00 31.86 1.98
2604 3133 1.487558 ACACTTTGGTAGGGAACACGT 59.512 47.619 0.00 0.00 0.00 4.49
2677 3206 0.586319 ACCGTCGTTTGCATTGTCAG 59.414 50.000 0.00 0.00 0.00 3.51
2739 3268 6.844388 TCATCCCTACTTCTCTTGCCTTTATA 59.156 38.462 0.00 0.00 0.00 0.98
2964 3493 4.503714 TCCCCATAGTCCAAAGATGTTC 57.496 45.455 0.00 0.00 0.00 3.18
2985 3514 5.249163 TGCTACTGCCCAGATTGTATCATAT 59.751 40.000 1.69 0.00 38.71 1.78
3032 3561 3.965379 TCTGAAATGTGGCATTTGCAT 57.035 38.095 11.24 0.00 44.36 3.96
3076 3605 5.968254 TGTTTCCAAGGTTTCCAAACTTAC 58.032 37.500 2.32 0.00 38.89 2.34
3104 3633 5.540911 CTTGCAACAGTTTTGGACCATTAT 58.459 37.500 0.00 0.00 0.00 1.28
3249 3778 3.953612 AGAGTTCATTTTGTGCTGTCCAA 59.046 39.130 0.00 0.00 0.00 3.53
3255 3784 2.221169 TGCGAGAGTTCATTTTGTGCT 58.779 42.857 0.00 0.00 0.00 4.40
3296 3825 3.509575 TGGATTTAGATGTGTTGTTGCCC 59.490 43.478 0.00 0.00 0.00 5.36
3370 3917 4.652822 ACTTGAAGTTTCTTCCCGCTTAT 58.347 39.130 0.00 0.00 0.00 1.73
3417 3964 5.130350 TCCTTTTCGACCTTCACAAATTCT 58.870 37.500 0.00 0.00 0.00 2.40
3558 4105 7.969536 ATCATTGTAATCTTCCATACTTCCG 57.030 36.000 0.00 0.00 0.00 4.30
3566 4113 8.956426 GGTAGACAAAATCATTGTAATCTTCCA 58.044 33.333 0.00 0.00 31.96 3.53
3567 4114 8.956426 TGGTAGACAAAATCATTGTAATCTTCC 58.044 33.333 0.00 0.00 31.96 3.46
3658 4206 5.704053 GCTTCAAGGCCTTAACTGTTACTAA 59.296 40.000 20.00 0.00 0.00 2.24
3661 4209 3.818773 TGCTTCAAGGCCTTAACTGTTAC 59.181 43.478 20.00 3.24 0.00 2.50
3662 4210 4.093472 TGCTTCAAGGCCTTAACTGTTA 57.907 40.909 20.00 0.00 0.00 2.41
3670 4218 1.620323 GGTTTCATGCTTCAAGGCCTT 59.380 47.619 13.78 13.78 0.00 4.35
3705 4253 6.464222 TGAAATCTTTCGTACCTCAAGATGT 58.536 36.000 8.77 4.79 37.34 3.06
3706 4254 6.968131 TGAAATCTTTCGTACCTCAAGATG 57.032 37.500 8.77 0.00 37.34 2.90
3707 4255 7.162082 ACTTGAAATCTTTCGTACCTCAAGAT 58.838 34.615 14.06 3.91 40.32 2.40
3709 4257 6.423905 TGACTTGAAATCTTTCGTACCTCAAG 59.576 38.462 7.23 7.23 42.44 3.02
3710 4258 6.285224 TGACTTGAAATCTTTCGTACCTCAA 58.715 36.000 0.00 0.00 40.01 3.02
3711 4259 5.849510 TGACTTGAAATCTTTCGTACCTCA 58.150 37.500 0.00 0.00 40.01 3.86
3712 4260 6.369065 ACATGACTTGAAATCTTTCGTACCTC 59.631 38.462 0.00 0.00 40.01 3.85
3714 4262 6.073222 ACACATGACTTGAAATCTTTCGTACC 60.073 38.462 0.00 0.00 40.01 3.34
3715 4263 6.888430 ACACATGACTTGAAATCTTTCGTAC 58.112 36.000 0.00 0.00 40.01 3.67
3716 4264 8.771920 ATACACATGACTTGAAATCTTTCGTA 57.228 30.769 0.00 0.00 40.01 3.43
3717 4265 7.672983 ATACACATGACTTGAAATCTTTCGT 57.327 32.000 0.00 0.00 40.01 3.85
3718 4266 8.955061 AAATACACATGACTTGAAATCTTTCG 57.045 30.769 0.00 0.00 40.01 3.46
3719 4267 9.346725 GGAAATACACATGACTTGAAATCTTTC 57.653 33.333 0.00 0.00 37.69 2.62
3720 4268 9.082313 AGGAAATACACATGACTTGAAATCTTT 57.918 29.630 0.00 0.00 0.00 2.52
3721 4269 8.641498 AGGAAATACACATGACTTGAAATCTT 57.359 30.769 0.00 0.00 0.00 2.40
3722 4270 9.167311 GTAGGAAATACACATGACTTGAAATCT 57.833 33.333 0.00 0.00 34.26 2.40
3723 4271 9.167311 AGTAGGAAATACACATGACTTGAAATC 57.833 33.333 0.00 0.00 36.79 2.17
3724 4272 9.520515 AAGTAGGAAATACACATGACTTGAAAT 57.479 29.630 0.00 0.00 36.79 2.17
3725 4273 8.783093 CAAGTAGGAAATACACATGACTTGAAA 58.217 33.333 0.00 0.00 43.22 2.69
3726 4274 8.154203 TCAAGTAGGAAATACACATGACTTGAA 58.846 33.333 13.68 2.68 45.04 2.69
3727 4275 7.676004 TCAAGTAGGAAATACACATGACTTGA 58.324 34.615 12.59 12.59 45.52 3.02
3728 4276 7.905604 TCAAGTAGGAAATACACATGACTTG 57.094 36.000 0.00 5.01 42.37 3.16
3729 4277 9.520515 AAATCAAGTAGGAAATACACATGACTT 57.479 29.630 0.00 0.00 36.79 3.01
3730 4278 9.520515 AAAATCAAGTAGGAAATACACATGACT 57.479 29.630 0.00 0.00 36.79 3.41
3731 4279 9.774742 GAAAATCAAGTAGGAAATACACATGAC 57.225 33.333 0.00 0.00 36.79 3.06
3788 4336 5.213891 AGCCTTTTATCCCAAACAAGTTG 57.786 39.130 0.00 0.00 36.94 3.16
3789 4337 5.508994 CGAAGCCTTTTATCCCAAACAAGTT 60.509 40.000 0.00 0.00 0.00 2.66
3790 4338 4.022329 CGAAGCCTTTTATCCCAAACAAGT 60.022 41.667 0.00 0.00 0.00 3.16
3791 4339 4.022329 ACGAAGCCTTTTATCCCAAACAAG 60.022 41.667 0.00 0.00 0.00 3.16
3792 4340 3.892588 ACGAAGCCTTTTATCCCAAACAA 59.107 39.130 0.00 0.00 0.00 2.83
3793 4341 3.492337 ACGAAGCCTTTTATCCCAAACA 58.508 40.909 0.00 0.00 0.00 2.83
3794 4342 5.182570 ACTTACGAAGCCTTTTATCCCAAAC 59.817 40.000 0.00 0.00 0.00 2.93
3795 4343 5.318630 ACTTACGAAGCCTTTTATCCCAAA 58.681 37.500 0.00 0.00 0.00 3.28
3796 4344 4.913784 ACTTACGAAGCCTTTTATCCCAA 58.086 39.130 0.00 0.00 0.00 4.12
3797 4345 4.563140 ACTTACGAAGCCTTTTATCCCA 57.437 40.909 0.00 0.00 0.00 4.37
3798 4346 6.111382 ACTTACTTACGAAGCCTTTTATCCC 58.889 40.000 0.00 0.00 0.00 3.85
3799 4347 8.707938 TTACTTACTTACGAAGCCTTTTATCC 57.292 34.615 0.00 0.00 0.00 2.59
3800 4348 9.363763 ACTTACTTACTTACGAAGCCTTTTATC 57.636 33.333 0.00 0.00 0.00 1.75
3803 4351 9.201127 CTTACTTACTTACTTACGAAGCCTTTT 57.799 33.333 0.00 0.00 0.00 2.27
3804 4352 8.363390 ACTTACTTACTTACTTACGAAGCCTTT 58.637 33.333 0.00 0.00 0.00 3.11
3805 4353 7.890515 ACTTACTTACTTACTTACGAAGCCTT 58.109 34.615 0.00 0.00 0.00 4.35
3806 4354 7.459795 ACTTACTTACTTACTTACGAAGCCT 57.540 36.000 0.00 0.00 0.00 4.58
3807 4355 9.283420 CTTACTTACTTACTTACTTACGAAGCC 57.717 37.037 0.00 0.00 0.00 4.35
3808 4356 9.833182 ACTTACTTACTTACTTACTTACGAAGC 57.167 33.333 0.00 0.00 0.00 3.86
3831 4379 9.433153 GCCTCAACTGTTTATACTTACTTACTT 57.567 33.333 0.00 0.00 0.00 2.24
3832 4380 8.039538 GGCCTCAACTGTTTATACTTACTTACT 58.960 37.037 0.00 0.00 0.00 2.24
3833 4381 8.039538 AGGCCTCAACTGTTTATACTTACTTAC 58.960 37.037 0.00 0.00 0.00 2.34
3834 4382 8.142485 AGGCCTCAACTGTTTATACTTACTTA 57.858 34.615 0.00 0.00 0.00 2.24
3835 4383 7.017319 AGGCCTCAACTGTTTATACTTACTT 57.983 36.000 0.00 0.00 0.00 2.24
3836 4384 6.622427 AGGCCTCAACTGTTTATACTTACT 57.378 37.500 0.00 0.00 0.00 2.24
3837 4385 6.877322 TCAAGGCCTCAACTGTTTATACTTAC 59.123 38.462 5.23 0.00 0.00 2.34
3838 4386 7.011499 TCAAGGCCTCAACTGTTTATACTTA 57.989 36.000 5.23 0.00 0.00 2.24
3839 4387 5.876357 TCAAGGCCTCAACTGTTTATACTT 58.124 37.500 5.23 0.00 0.00 2.24
3840 4388 5.499004 TCAAGGCCTCAACTGTTTATACT 57.501 39.130 5.23 0.00 0.00 2.12
3841 4389 5.392057 GCTTCAAGGCCTCAACTGTTTATAC 60.392 44.000 5.23 0.00 0.00 1.47
3842 4390 4.700213 GCTTCAAGGCCTCAACTGTTTATA 59.300 41.667 5.23 0.00 0.00 0.98
3843 4391 3.507622 GCTTCAAGGCCTCAACTGTTTAT 59.492 43.478 5.23 0.00 0.00 1.40
3844 4392 2.884639 GCTTCAAGGCCTCAACTGTTTA 59.115 45.455 5.23 0.00 0.00 2.01
3845 4393 1.683385 GCTTCAAGGCCTCAACTGTTT 59.317 47.619 5.23 0.00 0.00 2.83
3846 4394 1.322442 GCTTCAAGGCCTCAACTGTT 58.678 50.000 5.23 0.00 0.00 3.16
3847 4395 0.183492 TGCTTCAAGGCCTCAACTGT 59.817 50.000 5.23 0.00 0.00 3.55
3848 4396 1.542492 ATGCTTCAAGGCCTCAACTG 58.458 50.000 5.23 0.00 0.00 3.16
3849 4397 3.439857 TTATGCTTCAAGGCCTCAACT 57.560 42.857 5.23 0.00 0.00 3.16
3850 4398 3.119352 CCTTTATGCTTCAAGGCCTCAAC 60.119 47.826 5.23 0.00 33.37 3.18
3871 4419 8.859236 ACCTTTATAGTAGGAAAAAGTTCACC 57.141 34.615 9.33 0.00 36.58 4.02
3879 4427 9.796180 TGCAAGTTAACCTTTATAGTAGGAAAA 57.204 29.630 0.88 2.09 36.58 2.29
3880 4428 9.223099 GTGCAAGTTAACCTTTATAGTAGGAAA 57.777 33.333 0.88 2.36 36.58 3.13
3881 4429 8.377034 TGTGCAAGTTAACCTTTATAGTAGGAA 58.623 33.333 0.88 0.00 36.58 3.36
3882 4430 7.820872 GTGTGCAAGTTAACCTTTATAGTAGGA 59.179 37.037 0.88 0.00 36.58 2.94
3883 4431 7.604927 TGTGTGCAAGTTAACCTTTATAGTAGG 59.395 37.037 0.88 2.32 38.79 3.18
3884 4432 8.542497 TGTGTGCAAGTTAACCTTTATAGTAG 57.458 34.615 0.88 0.00 0.00 2.57
3885 4433 8.941977 CATGTGTGCAAGTTAACCTTTATAGTA 58.058 33.333 0.88 0.00 0.00 1.82
3886 4434 7.816640 CATGTGTGCAAGTTAACCTTTATAGT 58.183 34.615 0.88 0.00 0.00 2.12
3946 4556 7.339466 AGAAGGATGACAACAATGGGTTTATAC 59.661 37.037 0.00 0.00 37.72 1.47
3947 4557 7.410174 AGAAGGATGACAACAATGGGTTTATA 58.590 34.615 0.00 0.00 37.72 0.98
3948 4558 6.256053 AGAAGGATGACAACAATGGGTTTAT 58.744 36.000 0.00 0.00 37.72 1.40
3949 4559 5.640147 AGAAGGATGACAACAATGGGTTTA 58.360 37.500 0.00 0.00 37.72 2.01
3950 4560 4.482990 AGAAGGATGACAACAATGGGTTT 58.517 39.130 0.00 0.00 37.72 3.27
3951 4561 4.118168 AGAAGGATGACAACAATGGGTT 57.882 40.909 0.00 0.00 41.47 4.11
3952 4562 3.814504 AGAAGGATGACAACAATGGGT 57.185 42.857 0.00 0.00 0.00 4.51
3953 4563 4.081406 TGAAGAAGGATGACAACAATGGG 58.919 43.478 0.00 0.00 0.00 4.00
3954 4564 4.763793 AGTGAAGAAGGATGACAACAATGG 59.236 41.667 0.00 0.00 0.00 3.16
3955 4565 5.954296 AGTGAAGAAGGATGACAACAATG 57.046 39.130 0.00 0.00 0.00 2.82
3956 4566 6.773638 AGTAGTGAAGAAGGATGACAACAAT 58.226 36.000 0.00 0.00 0.00 2.71
3957 4567 6.174720 AGTAGTGAAGAAGGATGACAACAA 57.825 37.500 0.00 0.00 0.00 2.83
3958 4568 5.808366 AGTAGTGAAGAAGGATGACAACA 57.192 39.130 0.00 0.00 0.00 3.33
3959 4569 7.226720 TCAAAAGTAGTGAAGAAGGATGACAAC 59.773 37.037 0.00 0.00 0.00 3.32
4012 4623 4.223923 AGACTAGCATATATGAACAGGGCC 59.776 45.833 17.10 0.00 0.00 5.80
4014 4625 6.596309 TGAGACTAGCATATATGAACAGGG 57.404 41.667 17.10 2.68 0.00 4.45
4015 4626 6.971756 CGATGAGACTAGCATATATGAACAGG 59.028 42.308 17.10 3.96 0.00 4.00
4298 5443 9.944376 TTACTATATCATATTTCTGTGAAGGCC 57.056 33.333 0.00 0.00 0.00 5.19
4407 5552 0.824109 TGCTATCCCTGACTGGAACG 59.176 55.000 0.00 0.00 38.10 3.95
4488 5633 6.475727 CCACACCAGTGTAGATAAAGAATACG 59.524 42.308 2.55 0.00 44.39 3.06
4551 5696 3.884900 GGAATTGGTCCACGGACG 58.115 61.111 10.05 0.00 46.97 4.79
4560 5705 2.292828 CCAACTGTCTGGGAATTGGT 57.707 50.000 0.00 0.00 35.98 3.67
4629 5774 6.127083 ACCAACATGGGAAATGGATTTATCAC 60.127 38.462 0.00 0.00 43.37 3.06
4635 5780 2.236893 GCACCAACATGGGAAATGGATT 59.763 45.455 0.00 0.00 43.37 3.01
4644 5789 5.737063 GCTCTATTTTATGCACCAACATGGG 60.737 44.000 0.00 0.00 43.37 4.00
4684 5830 3.133721 CCGTCTTCCCATTCAGATCTCTT 59.866 47.826 0.00 0.00 0.00 2.85
4689 5835 5.839063 TCTATAACCGTCTTCCCATTCAGAT 59.161 40.000 0.00 0.00 0.00 2.90
4705 5851 9.609346 TTTTAGTTACATCAGGCTTCTATAACC 57.391 33.333 0.00 0.00 0.00 2.85
4723 5869 8.453238 TGTTAATTGTGGAGCTGTTTTAGTTA 57.547 30.769 0.00 0.00 0.00 2.24
4730 5876 5.304101 TCCATTTGTTAATTGTGGAGCTGTT 59.696 36.000 0.00 0.00 34.23 3.16
4763 5934 7.280652 ACCCAAATGTGTTTTGAGAAATTTCTG 59.719 33.333 25.12 7.35 46.36 3.02
4764 5935 7.337938 ACCCAAATGTGTTTTGAGAAATTTCT 58.662 30.769 20.60 20.60 46.36 2.52
4813 5984 8.521170 TCTACTACAGTGTTGTAATGAGCTAT 57.479 34.615 16.55 0.00 39.21 2.97
4854 6029 8.893219 TTGTTCTCCTCTATTTAGTGCATATG 57.107 34.615 0.00 0.00 0.00 1.78
4928 6133 5.439529 GCTCGAGGCTGAAGTTGAAAACC 62.440 52.174 15.58 0.00 42.56 3.27
4943 6148 2.029838 ATACTTTTGCCAGCTCGAGG 57.970 50.000 15.58 0.00 0.00 4.63
5173 6379 1.592400 CCTTGACGTAGGAGCCACGA 61.592 60.000 15.02 0.00 41.91 4.35
5263 6469 2.346766 TGCTTCCTCTTGAAAGTGCA 57.653 45.000 0.00 0.00 31.46 4.57
5383 6589 3.091633 ACATATCCAAAACCTGCAGCT 57.908 42.857 8.66 0.00 0.00 4.24
5459 6671 7.014808 TCTGGGGAAACAAATTGGTTAACTTAG 59.985 37.037 5.42 0.00 0.00 2.18
5468 6680 8.634335 AATTTTTATCTGGGGAAACAAATTGG 57.366 30.769 0.00 0.00 0.00 3.16
5474 6686 7.334858 GGCATTAATTTTTATCTGGGGAAACA 58.665 34.615 0.00 0.00 0.00 2.83
5486 6698 5.584253 TTGCTAGCCGGCATTAATTTTTA 57.416 34.783 31.54 7.71 42.09 1.52
5493 6709 1.134250 TGTGATTGCTAGCCGGCATTA 60.134 47.619 31.54 12.67 42.09 1.90
5495 6711 0.179009 ATGTGATTGCTAGCCGGCAT 60.179 50.000 31.54 13.37 42.09 4.40
5496 6712 0.815213 GATGTGATTGCTAGCCGGCA 60.815 55.000 31.54 14.00 40.74 5.69
5497 6713 0.815213 TGATGTGATTGCTAGCCGGC 60.815 55.000 21.89 21.89 0.00 6.13
5498 6714 1.202568 TCTGATGTGATTGCTAGCCGG 60.203 52.381 13.29 0.00 0.00 6.13
5499 6715 2.229675 TCTGATGTGATTGCTAGCCG 57.770 50.000 13.29 0.00 0.00 5.52
5500 6716 3.677121 CGTATCTGATGTGATTGCTAGCC 59.323 47.826 13.29 0.00 0.00 3.93
5515 6731 9.476202 TGATTATAGGATGTTCAAACGTATCTG 57.524 33.333 0.00 0.00 0.00 2.90
5522 6738 8.686334 ACCAACATGATTATAGGATGTTCAAAC 58.314 33.333 0.00 0.00 38.06 2.93
5540 6756 9.906660 TTTTGTAGCTTATTTTAGACCAACATG 57.093 29.630 0.00 0.00 0.00 3.21
5572 6789 7.362056 CGCAAGTTTATTATTAGGCATAGGCAT 60.362 37.037 0.15 0.00 43.71 4.40
5589 6807 2.235155 TCCATCTGGCTACGCAAGTTTA 59.765 45.455 0.00 0.00 43.51 2.01
5620 6857 5.779922 AGTATCAACGCTAGTGAAAGAACA 58.220 37.500 10.99 0.00 0.00 3.18
5622 6859 7.600065 ACTTAGTATCAACGCTAGTGAAAGAA 58.400 34.615 10.99 0.00 0.00 2.52
5624 6861 6.472808 GGACTTAGTATCAACGCTAGTGAAAG 59.527 42.308 10.99 0.53 0.00 2.62
5628 6865 5.244785 TGGACTTAGTATCAACGCTAGTG 57.755 43.478 0.59 0.59 0.00 2.74
5635 6872 8.893727 ACAAGCATAATTGGACTTAGTATCAAC 58.106 33.333 3.45 0.00 34.36 3.18
5655 6892 9.058174 TGCAAGTAAAAGTATAACTTACAAGCA 57.942 29.630 11.20 11.20 37.47 3.91
5700 6938 2.554032 CAAATGGAGAACAGACACCACC 59.446 50.000 0.00 0.00 33.82 4.61
5704 6942 6.206634 TCATTTACCAAATGGAGAACAGACAC 59.793 38.462 6.42 0.00 46.40 3.67
5719 6957 7.175119 TGACCACGTTATTGATTCATTTACCAA 59.825 33.333 0.00 0.00 0.00 3.67
5754 7002 3.737559 TCCCTTTGATAATGCCTGTGT 57.262 42.857 0.00 0.00 0.00 3.72
5840 7088 7.307870 CGATCTCCAATCCATTTCTTCTCAATC 60.308 40.741 0.00 0.00 0.00 2.67
6010 7258 4.558538 AACACAATCTCTGTTGACTTGC 57.441 40.909 0.00 0.00 35.47 4.01
6129 7539 2.846532 CCCACTTTCACCCTGGCT 59.153 61.111 0.00 0.00 0.00 4.75
6136 7546 3.740115 TGTTCTTCTAGCCCACTTTCAC 58.260 45.455 0.00 0.00 0.00 3.18
6137 7547 4.431416 TTGTTCTTCTAGCCCACTTTCA 57.569 40.909 0.00 0.00 0.00 2.69
6160 7573 5.808030 GTCTCAGATACCACTTCTAAACTGC 59.192 44.000 0.00 0.00 0.00 4.40
6221 7644 0.951558 CCCCTGAAAACGACAGTTGG 59.048 55.000 0.00 0.00 41.05 3.77
6266 7693 4.279922 TGAACGTCAGATGAGTTCCACTTA 59.720 41.667 15.93 2.77 42.40 2.24
6284 7711 3.492313 GGAGCTAAAAATGTGCTGAACG 58.508 45.455 0.00 0.00 37.16 3.95
6291 7718 6.599244 TGAGATAACAGGGAGCTAAAAATGTG 59.401 38.462 0.00 0.00 0.00 3.21
6452 9044 4.716784 TGAGCAATACAGGAGATTGGTAGT 59.283 41.667 0.45 0.00 43.23 2.73
6577 9208 8.116651 TGTAAAAACATGTGCCAGTTACATAT 57.883 30.769 0.00 0.00 36.67 1.78
6806 11543 5.610398 TGAGCAAGACAGTTATCTTCAACA 58.390 37.500 0.00 0.00 36.78 3.33
6819 11556 2.146342 GCTAACAGCTTGAGCAAGACA 58.854 47.619 14.04 0.00 45.16 3.41
6888 11630 9.190317 GTAGAAAGTTCAAAAGGGGATTCATAT 57.810 33.333 0.00 0.00 0.00 1.78
6922 11664 5.652994 TGTTGGCTTGAAAACTTAAGTGT 57.347 34.783 9.34 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.