Multiple sequence alignment - TraesCS5A01G218500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G218500 chr5A 100.000 3587 0 0 1 3587 436264578 436268164 0.000000e+00 6625
1 TraesCS5A01G218500 chr5A 92.736 592 41 2 2921 3512 25023276 25023865 0.000000e+00 854
2 TraesCS5A01G218500 chr5A 89.879 494 47 3 3019 3512 25023326 25023816 1.820000e-177 632
3 TraesCS5A01G218500 chr5A 79.659 703 105 23 687 1377 617977071 617976395 4.190000e-129 472
4 TraesCS5A01G218500 chr5A 86.364 374 35 10 2921 3294 617974098 617973741 9.330000e-106 394
5 TraesCS5A01G218500 chr5A 87.019 208 27 0 687 894 25020730 25020937 5.990000e-58 235
6 TraesCS5A01G218500 chr5A 100.000 53 0 0 3459 3511 436267596 436267648 8.200000e-17 99
7 TraesCS5A01G218500 chr1D 94.347 2229 106 11 686 2901 386434622 386436843 0.000000e+00 3400
8 TraesCS5A01G218500 chr1D 93.971 2239 107 10 686 2901 491851253 491849020 0.000000e+00 3362
9 TraesCS5A01G218500 chr1D 94.485 1505 73 6 1830 3325 416512984 416514487 0.000000e+00 2311
10 TraesCS5A01G218500 chr1D 89.184 1128 105 8 1789 2901 78107611 78106486 0.000000e+00 1391
11 TraesCS5A01G218500 chrUn 94.765 1681 76 8 1830 3501 10230086 10228409 0.000000e+00 2606
12 TraesCS5A01G218500 chrUn 94.299 1105 57 4 687 1785 10231183 10230079 0.000000e+00 1687
13 TraesCS5A01G218500 chrUn 94.900 451 23 0 3055 3505 10215335 10214885 0.000000e+00 706
14 TraesCS5A01G218500 chrUn 89.676 494 47 4 3019 3511 10228939 10228449 8.450000e-176 627
15 TraesCS5A01G218500 chr5D 96.146 1427 45 6 1830 3247 292686737 292688162 0.000000e+00 2322
16 TraesCS5A01G218500 chr5D 94.444 1170 57 5 1739 2901 13397975 13396807 0.000000e+00 1794
17 TraesCS5A01G218500 chr5D 90.702 1011 83 9 687 1690 13398990 13397984 0.000000e+00 1336
18 TraesCS5A01G218500 chr5D 89.017 519 30 14 117 623 334704107 334704610 5.090000e-173 617
19 TraesCS5A01G218500 chr6A 94.806 1444 63 7 1830 3265 592857959 592859398 0.000000e+00 2241
20 TraesCS5A01G218500 chr6A 94.872 78 4 0 3510 3587 561578613 561578536 4.860000e-24 122
21 TraesCS5A01G218500 chr6A 94.872 78 4 0 3510 3587 561591782 561591705 4.860000e-24 122
22 TraesCS5A01G218500 chr6A 92.593 81 6 0 3507 3587 16676497 16676577 2.260000e-22 117
23 TraesCS5A01G218500 chr2D 93.732 1356 72 8 2061 3404 81285102 81286456 0.000000e+00 2021
24 TraesCS5A01G218500 chr2D 94.304 1106 57 4 686 1785 81254970 81256075 0.000000e+00 1688
25 TraesCS5A01G218500 chr2D 88.683 1131 108 9 1789 2901 446897622 446898750 0.000000e+00 1362
26 TraesCS5A01G218500 chr2D 93.836 438 27 0 3065 3502 81286019 81286456 0.000000e+00 660
27 TraesCS5A01G218500 chr2D 93.734 399 23 2 3114 3511 81286019 81286416 6.630000e-167 597
28 TraesCS5A01G218500 chr2D 93.827 81 5 0 3507 3587 81289863 81289943 4.860000e-24 122
29 TraesCS5A01G218500 chr4B 95.535 1075 39 5 1835 2901 634466037 634467110 0.000000e+00 1711
30 TraesCS5A01G218500 chr4A 92.048 1094 80 5 687 1774 722383683 722382591 0.000000e+00 1531
31 TraesCS5A01G218500 chr6D 90.153 1178 97 11 1740 2901 90176410 90177584 0.000000e+00 1515
32 TraesCS5A01G218500 chr6D 89.017 1129 102 14 1789 2901 155820906 155819784 0.000000e+00 1378
33 TraesCS5A01G218500 chr6D 86.395 1007 107 19 688 1684 90175408 90176394 0.000000e+00 1074
34 TraesCS5A01G218500 chr2A 89.658 1170 104 8 1739 2894 770555339 770554173 0.000000e+00 1474
35 TraesCS5A01G218500 chr6B 90.958 1106 78 11 687 1774 468286352 468285251 0.000000e+00 1469
36 TraesCS5A01G218500 chr5B 88.918 1128 107 14 1789 2901 643321835 643320711 0.000000e+00 1375
37 TraesCS5A01G218500 chr5B 87.960 1005 109 8 687 1680 186149888 186150891 0.000000e+00 1175
38 TraesCS5A01G218500 chr5B 82.626 495 40 9 231 683 391647263 391647753 2.600000e-106 396
39 TraesCS5A01G218500 chr7A 93.976 166 10 0 2927 3092 488149090 488148925 5.940000e-63 252
40 TraesCS5A01G218500 chr7A 83.240 179 13 7 521 682 538378226 538378404 8.020000e-32 148
41 TraesCS5A01G218500 chr7A 94.872 78 4 0 3510 3587 488115411 488115334 4.860000e-24 122
42 TraesCS5A01G218500 chr7A 94.366 71 4 0 3516 3586 488476526 488476456 3.790000e-20 110
43 TraesCS5A01G218500 chr7D 78.750 320 37 16 384 682 461667204 461666895 6.120000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G218500 chr5A 436264578 436268164 3586 False 3362.000000 6625 100.000000 1 3587 2 chr5A.!!$F2 3586
1 TraesCS5A01G218500 chr5A 25020730 25023865 3135 False 573.666667 854 89.878000 687 3512 3 chr5A.!!$F1 2825
2 TraesCS5A01G218500 chr5A 617973741 617977071 3330 True 433.000000 472 83.011500 687 3294 2 chr5A.!!$R1 2607
3 TraesCS5A01G218500 chr1D 386434622 386436843 2221 False 3400.000000 3400 94.347000 686 2901 1 chr1D.!!$F1 2215
4 TraesCS5A01G218500 chr1D 491849020 491851253 2233 True 3362.000000 3362 93.971000 686 2901 1 chr1D.!!$R2 2215
5 TraesCS5A01G218500 chr1D 416512984 416514487 1503 False 2311.000000 2311 94.485000 1830 3325 1 chr1D.!!$F2 1495
6 TraesCS5A01G218500 chr1D 78106486 78107611 1125 True 1391.000000 1391 89.184000 1789 2901 1 chr1D.!!$R1 1112
7 TraesCS5A01G218500 chrUn 10228409 10231183 2774 True 1640.000000 2606 92.913333 687 3511 3 chrUn.!!$R2 2824
8 TraesCS5A01G218500 chr5D 292686737 292688162 1425 False 2322.000000 2322 96.146000 1830 3247 1 chr5D.!!$F1 1417
9 TraesCS5A01G218500 chr5D 13396807 13398990 2183 True 1565.000000 1794 92.573000 687 2901 2 chr5D.!!$R1 2214
10 TraesCS5A01G218500 chr5D 334704107 334704610 503 False 617.000000 617 89.017000 117 623 1 chr5D.!!$F2 506
11 TraesCS5A01G218500 chr6A 592857959 592859398 1439 False 2241.000000 2241 94.806000 1830 3265 1 chr6A.!!$F2 1435
12 TraesCS5A01G218500 chr2D 81254970 81256075 1105 False 1688.000000 1688 94.304000 686 1785 1 chr2D.!!$F1 1099
13 TraesCS5A01G218500 chr2D 446897622 446898750 1128 False 1362.000000 1362 88.683000 1789 2901 1 chr2D.!!$F2 1112
14 TraesCS5A01G218500 chr2D 81285102 81289943 4841 False 850.000000 2021 93.782250 2061 3587 4 chr2D.!!$F3 1526
15 TraesCS5A01G218500 chr4B 634466037 634467110 1073 False 1711.000000 1711 95.535000 1835 2901 1 chr4B.!!$F1 1066
16 TraesCS5A01G218500 chr4A 722382591 722383683 1092 True 1531.000000 1531 92.048000 687 1774 1 chr4A.!!$R1 1087
17 TraesCS5A01G218500 chr6D 155819784 155820906 1122 True 1378.000000 1378 89.017000 1789 2901 1 chr6D.!!$R1 1112
18 TraesCS5A01G218500 chr6D 90175408 90177584 2176 False 1294.500000 1515 88.274000 688 2901 2 chr6D.!!$F1 2213
19 TraesCS5A01G218500 chr2A 770554173 770555339 1166 True 1474.000000 1474 89.658000 1739 2894 1 chr2A.!!$R1 1155
20 TraesCS5A01G218500 chr6B 468285251 468286352 1101 True 1469.000000 1469 90.958000 687 1774 1 chr6B.!!$R1 1087
21 TraesCS5A01G218500 chr5B 643320711 643321835 1124 True 1375.000000 1375 88.918000 1789 2901 1 chr5B.!!$R1 1112
22 TraesCS5A01G218500 chr5B 186149888 186150891 1003 False 1175.000000 1175 87.960000 687 1680 1 chr5B.!!$F1 993

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 575 0.027194 CGCCGTCAATTGAGCATGAG 59.973 55.000 8.80 0.00 0.00 2.90 F
724 730 0.182775 ACCGCATTAAAGCCTAGGGG 59.817 55.000 11.72 1.92 38.18 4.79 F
1130 1398 2.040145 TGGCATCATCAAGGTCAGTTGA 59.960 45.455 0.00 0.00 40.68 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 1871 0.463116 GAACACACTCCAACGGTGGT 60.463 55.000 21.31 0.00 46.11 4.16 R
1806 2694 3.945921 CGTGACTAGGATGAAGACCACTA 59.054 47.826 0.00 0.00 0.00 2.74 R
2724 4843 3.391296 ACAACACTACTGGATCCAACACT 59.609 43.478 17.00 1.05 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.567385 GCCGAGCTCGCTGGAGAG 62.567 72.222 30.49 15.69 43.27 3.20
33 34 3.898509 CCGAGCTCGCTGGAGAGG 61.899 72.222 30.49 10.45 43.27 3.69
34 35 4.567385 CGAGCTCGCTGGAGAGGC 62.567 72.222 25.07 0.00 43.27 4.70
35 36 4.219999 GAGCTCGCTGGAGAGGCC 62.220 72.222 0.00 0.00 43.27 5.19
57 58 4.339809 CGTCGCACACACGCACTG 62.340 66.667 0.00 0.00 0.00 3.66
58 59 4.649954 GTCGCACACACGCACTGC 62.650 66.667 0.00 0.00 0.00 4.40
60 61 4.943591 CGCACACACGCACTGCAC 62.944 66.667 1.11 0.00 0.00 4.57
61 62 3.875039 GCACACACGCACTGCACA 61.875 61.111 1.11 0.00 0.00 4.57
62 63 2.023181 CACACACGCACTGCACAC 59.977 61.111 1.11 0.00 0.00 3.82
63 64 2.435762 ACACACGCACTGCACACA 60.436 55.556 1.11 0.00 0.00 3.72
64 65 2.023181 CACACGCACTGCACACAC 59.977 61.111 1.11 0.00 0.00 3.82
65 66 2.435762 ACACGCACTGCACACACA 60.436 55.556 1.11 0.00 0.00 3.72
66 67 2.023181 CACGCACTGCACACACAC 59.977 61.111 1.11 0.00 0.00 3.82
67 68 2.435762 ACGCACTGCACACACACA 60.436 55.556 1.11 0.00 0.00 3.72
68 69 2.023181 CGCACTGCACACACACAC 59.977 61.111 1.11 0.00 0.00 3.82
69 70 2.748843 CGCACTGCACACACACACA 61.749 57.895 1.11 0.00 0.00 3.72
70 71 1.226379 GCACTGCACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
71 72 1.921045 GCACTGCACACACACACACA 61.921 55.000 0.00 0.00 0.00 3.72
72 73 0.179192 CACTGCACACACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
73 74 1.060779 CTGCACACACACACACACG 59.939 57.895 0.00 0.00 0.00 4.49
74 75 1.357991 CTGCACACACACACACACGA 61.358 55.000 0.00 0.00 0.00 4.35
75 76 1.060308 GCACACACACACACACGAC 59.940 57.895 0.00 0.00 0.00 4.34
76 77 1.343484 CACACACACACACACGACG 59.657 57.895 0.00 0.00 0.00 5.12
77 78 2.319707 CACACACACACACGACGC 59.680 61.111 0.00 0.00 0.00 5.19
78 79 2.125872 ACACACACACACGACGCA 60.126 55.556 0.00 0.00 0.00 5.24
79 80 1.738464 ACACACACACACGACGCAA 60.738 52.632 0.00 0.00 0.00 4.85
81 82 2.171079 ACACACACACGACGCAAGG 61.171 57.895 0.00 0.00 46.39 3.61
82 83 2.171079 CACACACACGACGCAAGGT 61.171 57.895 0.00 0.00 46.39 3.50
83 84 2.171079 ACACACACGACGCAAGGTG 61.171 57.895 0.00 1.29 46.39 4.00
84 85 3.269347 ACACACGACGCAAGGTGC 61.269 61.111 0.00 0.00 46.39 5.01
85 86 3.268603 CACACGACGCAAGGTGCA 61.269 61.111 0.00 0.00 45.36 4.57
86 87 3.269347 ACACGACGCAAGGTGCAC 61.269 61.111 8.80 8.80 45.36 4.57
87 88 3.268603 CACGACGCAAGGTGCACA 61.269 61.111 20.43 0.00 45.36 4.57
88 89 3.269347 ACGACGCAAGGTGCACAC 61.269 61.111 20.43 8.23 45.36 3.82
89 90 3.268603 CGACGCAAGGTGCACACA 61.269 61.111 20.43 0.00 45.36 3.72
90 91 2.327940 GACGCAAGGTGCACACAC 59.672 61.111 20.43 0.61 45.36 3.82
175 180 4.200283 GAGACCGCGCTCCTGGAG 62.200 72.222 19.55 19.55 0.00 3.86
184 189 2.420890 CTCCTGGAGCTCGATGGC 59.579 66.667 11.42 0.00 0.00 4.40
185 190 3.496875 CTCCTGGAGCTCGATGGCG 62.497 68.421 11.42 0.85 37.29 5.69
186 191 4.598894 CCTGGAGCTCGATGGCGG 62.599 72.222 7.83 0.00 38.28 6.13
187 192 3.531207 CTGGAGCTCGATGGCGGA 61.531 66.667 7.83 0.00 38.28 5.54
188 193 2.839632 TGGAGCTCGATGGCGGAT 60.840 61.111 7.83 0.00 38.28 4.18
189 194 2.356793 GGAGCTCGATGGCGGATG 60.357 66.667 7.83 0.00 38.28 3.51
190 195 3.040763 GAGCTCGATGGCGGATGC 61.041 66.667 0.00 0.00 41.71 3.91
214 219 4.415332 GAGCGCACCGTCGGAGAA 62.415 66.667 20.51 0.00 39.69 2.87
215 220 4.421479 AGCGCACCGTCGGAGAAG 62.421 66.667 20.51 9.18 39.69 2.85
224 229 3.571119 TCGGAGAAGGACGACGAC 58.429 61.111 0.00 0.00 33.69 4.34
225 230 2.037136 TCGGAGAAGGACGACGACC 61.037 63.158 8.37 8.37 33.69 4.79
226 231 2.883621 GGAGAAGGACGACGACCC 59.116 66.667 12.78 7.75 0.00 4.46
227 232 2.484203 GAGAAGGACGACGACCCG 59.516 66.667 12.78 0.00 0.00 5.28
228 233 3.680338 GAGAAGGACGACGACCCGC 62.680 68.421 12.78 5.44 0.00 6.13
229 234 3.745803 GAAGGACGACGACCCGCT 61.746 66.667 12.78 0.00 0.00 5.52
230 235 3.966026 GAAGGACGACGACCCGCTG 62.966 68.421 12.78 0.00 0.00 5.18
252 257 3.474806 CGAAGCATCGTGGTGTCC 58.525 61.111 2.58 0.00 44.06 4.02
253 258 2.444624 CGAAGCATCGTGGTGTCCG 61.445 63.158 2.58 0.00 44.06 4.79
254 259 2.740714 GAAGCATCGTGGTGTCCGC 61.741 63.158 0.00 0.00 0.00 5.54
255 260 3.240134 AAGCATCGTGGTGTCCGCT 62.240 57.895 0.00 0.00 0.00 5.52
256 261 3.188786 GCATCGTGGTGTCCGCTC 61.189 66.667 0.00 0.00 0.00 5.03
257 262 2.509336 CATCGTGGTGTCCGCTCC 60.509 66.667 0.00 0.00 0.00 4.70
258 263 2.680352 ATCGTGGTGTCCGCTCCT 60.680 61.111 0.00 0.00 0.00 3.69
259 264 2.711922 ATCGTGGTGTCCGCTCCTC 61.712 63.158 0.00 0.00 0.00 3.71
260 265 4.436998 CGTGGTGTCCGCTCCTCC 62.437 72.222 0.00 0.00 0.00 4.30
261 266 2.997897 GTGGTGTCCGCTCCTCCT 60.998 66.667 0.00 0.00 0.00 3.69
262 267 2.680352 TGGTGTCCGCTCCTCCTC 60.680 66.667 0.00 0.00 0.00 3.71
263 268 3.827898 GGTGTCCGCTCCTCCTCG 61.828 72.222 0.00 0.00 0.00 4.63
264 269 3.827898 GTGTCCGCTCCTCCTCGG 61.828 72.222 0.00 0.00 46.52 4.63
309 314 2.893895 CGCCACGCAGCAGATCAT 60.894 61.111 0.00 0.00 0.00 2.45
310 315 2.713770 GCCACGCAGCAGATCATG 59.286 61.111 0.00 0.00 0.00 3.07
311 316 2.831366 GCCACGCAGCAGATCATGG 61.831 63.158 0.00 0.00 0.00 3.66
312 317 2.713770 CACGCAGCAGATCATGGC 59.286 61.111 0.00 0.00 0.00 4.40
313 318 2.515523 ACGCAGCAGATCATGGCC 60.516 61.111 0.00 0.00 0.00 5.36
314 319 2.515290 CGCAGCAGATCATGGCCA 60.515 61.111 8.56 8.56 0.00 5.36
315 320 2.831366 CGCAGCAGATCATGGCCAC 61.831 63.158 8.16 0.00 0.00 5.01
316 321 2.831366 GCAGCAGATCATGGCCACG 61.831 63.158 8.16 0.00 0.00 4.94
317 322 2.184830 CAGCAGATCATGGCCACGG 61.185 63.158 8.16 3.01 0.00 4.94
318 323 2.190313 GCAGATCATGGCCACGGA 59.810 61.111 8.16 10.00 0.00 4.69
319 324 2.182842 GCAGATCATGGCCACGGAC 61.183 63.158 8.16 0.00 0.00 4.79
320 325 1.524621 CAGATCATGGCCACGGACC 60.525 63.158 8.16 0.00 0.00 4.46
321 326 1.995066 AGATCATGGCCACGGACCA 60.995 57.895 8.16 2.35 42.61 4.02
322 327 1.819632 GATCATGGCCACGGACCAC 60.820 63.158 8.16 0.98 40.82 4.16
336 341 4.508128 CCACGGACAGGCGCGTAT 62.508 66.667 8.43 0.00 0.00 3.06
337 342 3.254654 CACGGACAGGCGCGTATG 61.255 66.667 8.43 9.71 0.00 2.39
338 343 3.755628 ACGGACAGGCGCGTATGT 61.756 61.111 16.48 16.48 0.00 2.29
339 344 2.409055 ACGGACAGGCGCGTATGTA 61.409 57.895 16.49 0.00 0.00 2.29
340 345 1.226745 CGGACAGGCGCGTATGTAA 60.227 57.895 16.49 0.00 0.00 2.41
341 346 1.477030 CGGACAGGCGCGTATGTAAC 61.477 60.000 16.49 12.12 0.00 2.50
342 347 0.179119 GGACAGGCGCGTATGTAACT 60.179 55.000 16.49 0.00 0.00 2.24
343 348 0.921347 GACAGGCGCGTATGTAACTG 59.079 55.000 16.49 7.83 0.00 3.16
344 349 1.082117 ACAGGCGCGTATGTAACTGC 61.082 55.000 15.24 0.00 0.00 4.40
345 350 1.081556 CAGGCGCGTATGTAACTGCA 61.082 55.000 8.43 0.00 0.00 4.41
346 351 0.806102 AGGCGCGTATGTAACTGCAG 60.806 55.000 13.48 13.48 0.00 4.41
347 352 1.012234 GCGCGTATGTAACTGCAGC 60.012 57.895 15.27 0.00 0.00 5.25
348 353 1.636340 CGCGTATGTAACTGCAGCC 59.364 57.895 15.27 2.31 0.00 4.85
349 354 0.806102 CGCGTATGTAACTGCAGCCT 60.806 55.000 15.27 3.55 0.00 4.58
350 355 0.931005 GCGTATGTAACTGCAGCCTC 59.069 55.000 15.27 4.61 0.00 4.70
351 356 1.200483 CGTATGTAACTGCAGCCTCG 58.800 55.000 15.27 5.69 0.00 4.63
352 357 1.469251 CGTATGTAACTGCAGCCTCGT 60.469 52.381 15.27 8.01 0.00 4.18
353 358 2.194271 GTATGTAACTGCAGCCTCGTC 58.806 52.381 15.27 0.00 0.00 4.20
354 359 0.458543 ATGTAACTGCAGCCTCGTCG 60.459 55.000 15.27 0.00 0.00 5.12
355 360 1.805945 GTAACTGCAGCCTCGTCGG 60.806 63.158 15.27 0.00 0.00 4.79
356 361 2.273179 TAACTGCAGCCTCGTCGGT 61.273 57.895 15.27 0.00 34.25 4.69
357 362 1.812686 TAACTGCAGCCTCGTCGGTT 61.813 55.000 15.27 0.04 34.16 4.44
358 363 2.811317 CTGCAGCCTCGTCGGTTC 60.811 66.667 0.00 0.00 34.25 3.62
359 364 3.573772 CTGCAGCCTCGTCGGTTCA 62.574 63.158 0.00 0.00 34.25 3.18
360 365 2.811317 GCAGCCTCGTCGGTTCAG 60.811 66.667 0.00 0.00 34.25 3.02
361 366 2.651361 CAGCCTCGTCGGTTCAGT 59.349 61.111 0.00 0.00 34.25 3.41
362 367 1.006102 CAGCCTCGTCGGTTCAGTT 60.006 57.895 0.00 0.00 34.25 3.16
363 368 1.006102 AGCCTCGTCGGTTCAGTTG 60.006 57.895 0.00 0.00 34.25 3.16
364 369 2.668280 GCCTCGTCGGTTCAGTTGC 61.668 63.158 0.00 0.00 34.25 4.17
365 370 1.300620 CCTCGTCGGTTCAGTTGCA 60.301 57.895 0.00 0.00 0.00 4.08
366 371 0.670546 CCTCGTCGGTTCAGTTGCAT 60.671 55.000 0.00 0.00 0.00 3.96
367 372 1.148310 CTCGTCGGTTCAGTTGCATT 58.852 50.000 0.00 0.00 0.00 3.56
368 373 1.531149 CTCGTCGGTTCAGTTGCATTT 59.469 47.619 0.00 0.00 0.00 2.32
369 374 1.262950 TCGTCGGTTCAGTTGCATTTG 59.737 47.619 0.00 0.00 0.00 2.32
370 375 1.408422 GTCGGTTCAGTTGCATTTGC 58.592 50.000 0.00 0.00 42.50 3.68
381 386 3.611433 GCATTTGCATCGTCAGACC 57.389 52.632 0.00 0.00 41.59 3.85
382 387 0.804364 GCATTTGCATCGTCAGACCA 59.196 50.000 0.00 0.00 41.59 4.02
383 388 1.202110 GCATTTGCATCGTCAGACCAG 60.202 52.381 0.00 0.00 41.59 4.00
384 389 2.079158 CATTTGCATCGTCAGACCAGT 58.921 47.619 0.00 0.00 0.00 4.00
385 390 1.511850 TTTGCATCGTCAGACCAGTG 58.488 50.000 0.00 0.00 0.00 3.66
386 391 0.950555 TTGCATCGTCAGACCAGTGC 60.951 55.000 10.90 10.90 0.00 4.40
387 392 1.374631 GCATCGTCAGACCAGTGCA 60.375 57.895 12.31 0.00 33.09 4.57
388 393 0.742281 GCATCGTCAGACCAGTGCAT 60.742 55.000 12.31 0.00 33.09 3.96
389 394 1.004595 CATCGTCAGACCAGTGCATG 58.995 55.000 0.00 0.00 0.00 4.06
390 395 0.742281 ATCGTCAGACCAGTGCATGC 60.742 55.000 11.82 11.82 0.00 4.06
391 396 1.668793 CGTCAGACCAGTGCATGCA 60.669 57.895 18.46 18.46 0.00 3.96
392 397 1.871772 GTCAGACCAGTGCATGCAC 59.128 57.895 37.87 37.87 46.50 4.57
400 405 4.007457 GTGCATGCACCACCAGAT 57.993 55.556 35.69 0.00 40.79 2.90
401 406 2.269978 GTGCATGCACCACCAGATT 58.730 52.632 35.69 0.00 40.79 2.40
402 407 1.462616 GTGCATGCACCACCAGATTA 58.537 50.000 35.69 0.12 40.79 1.75
403 408 1.402968 GTGCATGCACCACCAGATTAG 59.597 52.381 35.69 0.00 40.79 1.73
404 409 1.004628 TGCATGCACCACCAGATTAGT 59.995 47.619 18.46 0.00 0.00 2.24
405 410 2.094675 GCATGCACCACCAGATTAGTT 58.905 47.619 14.21 0.00 0.00 2.24
406 411 3.278574 GCATGCACCACCAGATTAGTTA 58.721 45.455 14.21 0.00 0.00 2.24
407 412 3.313526 GCATGCACCACCAGATTAGTTAG 59.686 47.826 14.21 0.00 0.00 2.34
408 413 4.517285 CATGCACCACCAGATTAGTTAGT 58.483 43.478 0.00 0.00 0.00 2.24
409 414 4.202245 TGCACCACCAGATTAGTTAGTC 57.798 45.455 0.00 0.00 0.00 2.59
410 415 3.055385 TGCACCACCAGATTAGTTAGTCC 60.055 47.826 0.00 0.00 0.00 3.85
411 416 3.782046 CACCACCAGATTAGTTAGTCCG 58.218 50.000 0.00 0.00 0.00 4.79
412 417 3.194968 CACCACCAGATTAGTTAGTCCGT 59.805 47.826 0.00 0.00 0.00 4.69
413 418 4.400251 CACCACCAGATTAGTTAGTCCGTA 59.600 45.833 0.00 0.00 0.00 4.02
414 419 4.400567 ACCACCAGATTAGTTAGTCCGTAC 59.599 45.833 0.00 0.00 0.00 3.67
415 420 4.643784 CCACCAGATTAGTTAGTCCGTACT 59.356 45.833 0.00 0.00 39.91 2.73
416 421 5.221009 CCACCAGATTAGTTAGTCCGTACTC 60.221 48.000 0.00 0.00 37.15 2.59
417 422 4.574013 ACCAGATTAGTTAGTCCGTACTCG 59.426 45.833 0.00 0.00 37.15 4.18
427 432 2.780643 CGTACTCGGAGCGAACGA 59.219 61.111 17.93 0.92 40.85 3.85
428 433 1.579626 CGTACTCGGAGCGAACGAC 60.580 63.158 17.93 2.74 40.85 4.34
429 434 1.579626 GTACTCGGAGCGAACGACG 60.580 63.158 4.58 0.00 45.66 5.12
430 435 1.737735 TACTCGGAGCGAACGACGA 60.738 57.895 4.58 3.99 45.77 4.20
431 436 1.959899 TACTCGGAGCGAACGACGAC 61.960 60.000 4.58 0.00 45.77 4.34
432 437 4.434938 TCGGAGCGAACGACGACG 62.435 66.667 5.58 5.58 45.77 5.12
439 444 4.651008 GAACGACGACGCCCACCA 62.651 66.667 7.30 0.00 43.96 4.17
440 445 3.927163 GAACGACGACGCCCACCAT 62.927 63.158 7.30 0.00 43.96 3.55
441 446 4.735132 ACGACGACGCCCACCATG 62.735 66.667 7.30 0.00 43.96 3.66
446 451 3.127533 GACGCCCACCATGCACTC 61.128 66.667 0.00 0.00 0.00 3.51
447 452 4.722700 ACGCCCACCATGCACTCC 62.723 66.667 0.00 0.00 0.00 3.85
452 457 4.758251 CACCATGCACTCCGCCGA 62.758 66.667 0.00 0.00 41.33 5.54
453 458 4.760047 ACCATGCACTCCGCCGAC 62.760 66.667 0.00 0.00 41.33 4.79
455 460 4.794439 CATGCACTCCGCCGACGA 62.794 66.667 0.00 0.00 43.93 4.20
456 461 4.498520 ATGCACTCCGCCGACGAG 62.499 66.667 0.00 0.00 43.93 4.18
466 471 3.770040 CCGACGAGCCCATGTCCA 61.770 66.667 0.00 0.00 0.00 4.02
467 472 2.509336 CGACGAGCCCATGTCCAC 60.509 66.667 0.00 0.00 0.00 4.02
468 473 2.982130 GACGAGCCCATGTCCACT 59.018 61.111 0.00 0.00 0.00 4.00
469 474 1.153549 GACGAGCCCATGTCCACTC 60.154 63.158 0.00 0.00 0.00 3.51
470 475 2.187946 CGAGCCCATGTCCACTCC 59.812 66.667 0.00 0.00 0.00 3.85
471 476 2.187946 GAGCCCATGTCCACTCCG 59.812 66.667 0.00 0.00 0.00 4.63
472 477 3.391665 GAGCCCATGTCCACTCCGG 62.392 68.421 0.00 0.00 0.00 5.14
474 479 4.489771 CCCATGTCCACTCCGGCC 62.490 72.222 0.00 0.00 33.14 6.13
475 480 4.838152 CCATGTCCACTCCGGCCG 62.838 72.222 21.04 21.04 33.14 6.13
484 489 3.515286 CTCCGGCCGCGAGAAGTA 61.515 66.667 29.08 4.51 0.00 2.24
485 490 3.471244 CTCCGGCCGCGAGAAGTAG 62.471 68.421 29.08 11.19 0.00 2.57
487 492 4.492160 CGGCCGCGAGAAGTAGCA 62.492 66.667 14.67 0.00 0.00 3.49
488 493 2.886124 GGCCGCGAGAAGTAGCAC 60.886 66.667 8.23 0.00 0.00 4.40
489 494 2.886124 GCCGCGAGAAGTAGCACC 60.886 66.667 8.23 0.00 0.00 5.01
490 495 2.571757 CCGCGAGAAGTAGCACCA 59.428 61.111 8.23 0.00 0.00 4.17
491 496 1.805945 CCGCGAGAAGTAGCACCAC 60.806 63.158 8.23 0.00 0.00 4.16
492 497 2.152699 CGCGAGAAGTAGCACCACG 61.153 63.158 0.00 0.00 0.00 4.94
493 498 1.805945 GCGAGAAGTAGCACCACGG 60.806 63.158 0.00 0.00 0.00 4.94
494 499 1.805945 CGAGAAGTAGCACCACGGC 60.806 63.158 0.00 0.00 0.00 5.68
495 500 1.292223 GAGAAGTAGCACCACGGCA 59.708 57.895 0.00 0.00 35.83 5.69
496 501 0.737715 GAGAAGTAGCACCACGGCAG 60.738 60.000 0.00 0.00 35.83 4.85
497 502 2.358737 AAGTAGCACCACGGCAGC 60.359 61.111 0.00 0.00 35.83 5.25
498 503 3.177194 AAGTAGCACCACGGCAGCA 62.177 57.895 0.00 0.00 35.83 4.41
499 504 2.668212 GTAGCACCACGGCAGCAA 60.668 61.111 0.00 0.00 35.83 3.91
500 505 2.358615 TAGCACCACGGCAGCAAG 60.359 61.111 0.00 0.00 35.83 4.01
501 506 3.899981 TAGCACCACGGCAGCAAGG 62.900 63.158 0.00 0.00 35.83 3.61
503 508 4.641645 CACCACGGCAGCAAGGGA 62.642 66.667 0.00 0.00 0.00 4.20
504 509 4.335647 ACCACGGCAGCAAGGGAG 62.336 66.667 0.00 0.00 0.00 4.30
510 515 4.666253 GCAGCAAGGGAGGCACCA 62.666 66.667 2.69 0.00 41.20 4.17
511 516 2.674380 CAGCAAGGGAGGCACCAC 60.674 66.667 2.69 0.00 41.20 4.16
512 517 4.335647 AGCAAGGGAGGCACCACG 62.336 66.667 2.69 0.00 41.20 4.94
514 519 3.636231 CAAGGGAGGCACCACGGA 61.636 66.667 2.69 0.00 41.20 4.69
515 520 2.852075 AAGGGAGGCACCACGGAA 60.852 61.111 2.69 0.00 41.20 4.30
516 521 2.895424 AAGGGAGGCACCACGGAAG 61.895 63.158 2.69 0.00 41.20 3.46
517 522 4.410400 GGGAGGCACCACGGAAGG 62.410 72.222 2.69 0.00 41.20 3.46
518 523 3.637273 GGAGGCACCACGGAAGGT 61.637 66.667 0.00 0.00 44.48 3.50
519 524 2.047179 GAGGCACCACGGAAGGTC 60.047 66.667 0.00 0.00 40.77 3.85
520 525 3.934391 GAGGCACCACGGAAGGTCG 62.934 68.421 0.00 0.00 40.77 4.79
522 527 4.980805 GCACCACGGAAGGTCGCA 62.981 66.667 10.83 0.00 40.77 5.10
523 528 2.738521 CACCACGGAAGGTCGCAG 60.739 66.667 0.00 0.00 40.77 5.18
524 529 4.681978 ACCACGGAAGGTCGCAGC 62.682 66.667 0.00 0.00 37.28 5.25
529 534 4.821589 GGAAGGTCGCAGCGGAGG 62.822 72.222 16.42 0.00 0.00 4.30
530 535 3.760035 GAAGGTCGCAGCGGAGGA 61.760 66.667 16.42 0.00 0.00 3.71
531 536 3.991536 GAAGGTCGCAGCGGAGGAC 62.992 68.421 16.42 5.28 0.00 3.85
542 547 4.821589 GGAGGACGGCGGCAAGAG 62.822 72.222 17.61 0.00 0.00 2.85
551 556 3.414700 CGGCAAGAGCACGGTGTC 61.415 66.667 10.24 6.33 44.61 3.67
552 557 3.414700 GGCAAGAGCACGGTGTCG 61.415 66.667 10.24 0.00 44.61 4.35
553 558 4.077188 GCAAGAGCACGGTGTCGC 62.077 66.667 10.24 4.29 41.58 5.19
554 559 3.414700 CAAGAGCACGGTGTCGCC 61.415 66.667 10.24 0.00 40.63 5.54
563 568 3.960237 GGTGTCGCCGTCAATTGA 58.040 55.556 3.38 3.38 0.00 2.57
564 569 1.787847 GGTGTCGCCGTCAATTGAG 59.212 57.895 8.80 0.00 0.00 3.02
565 570 1.132640 GTGTCGCCGTCAATTGAGC 59.867 57.895 8.80 9.00 0.00 4.26
566 571 1.301322 TGTCGCCGTCAATTGAGCA 60.301 52.632 8.80 0.00 0.00 4.26
567 572 0.673333 TGTCGCCGTCAATTGAGCAT 60.673 50.000 8.80 0.00 0.00 3.79
568 573 0.247814 GTCGCCGTCAATTGAGCATG 60.248 55.000 8.80 0.00 0.00 4.06
569 574 0.390998 TCGCCGTCAATTGAGCATGA 60.391 50.000 8.80 2.40 0.00 3.07
570 575 0.027194 CGCCGTCAATTGAGCATGAG 59.973 55.000 8.80 0.00 0.00 2.90
571 576 0.248377 GCCGTCAATTGAGCATGAGC 60.248 55.000 8.80 2.21 42.56 4.26
572 577 1.089112 CCGTCAATTGAGCATGAGCA 58.911 50.000 8.80 0.00 45.49 4.26
573 578 1.063616 CCGTCAATTGAGCATGAGCAG 59.936 52.381 8.80 0.00 45.49 4.24
574 579 1.531264 CGTCAATTGAGCATGAGCAGC 60.531 52.381 8.80 0.00 45.49 5.25
575 580 1.471287 GTCAATTGAGCATGAGCAGCA 59.529 47.619 8.80 0.00 45.49 4.41
576 581 1.743394 TCAATTGAGCATGAGCAGCAG 59.257 47.619 3.38 0.00 45.49 4.24
577 582 1.743394 CAATTGAGCATGAGCAGCAGA 59.257 47.619 0.00 0.00 45.49 4.26
578 583 2.350057 ATTGAGCATGAGCAGCAGAT 57.650 45.000 0.00 0.00 45.49 2.90
579 584 1.379527 TTGAGCATGAGCAGCAGATG 58.620 50.000 0.00 0.00 45.49 2.90
580 585 0.539986 TGAGCATGAGCAGCAGATGA 59.460 50.000 0.00 0.00 45.49 2.92
581 586 0.938713 GAGCATGAGCAGCAGATGAC 59.061 55.000 0.00 0.69 45.49 3.06
582 587 0.464013 AGCATGAGCAGCAGATGACC 60.464 55.000 0.00 0.00 45.49 4.02
583 588 1.445716 GCATGAGCAGCAGATGACCC 61.446 60.000 0.00 0.00 41.58 4.46
584 589 1.145598 ATGAGCAGCAGATGACCCG 59.854 57.895 0.00 0.00 0.00 5.28
585 590 2.202987 GAGCAGCAGATGACCCGG 60.203 66.667 0.00 0.00 0.00 5.73
586 591 3.005539 AGCAGCAGATGACCCGGT 61.006 61.111 0.00 0.00 0.00 5.28
587 592 2.512515 GCAGCAGATGACCCGGTC 60.513 66.667 10.96 10.96 0.00 4.79
588 593 3.023949 GCAGCAGATGACCCGGTCT 62.024 63.158 18.54 4.29 33.15 3.85
589 594 1.142748 CAGCAGATGACCCGGTCTC 59.857 63.158 18.54 12.72 33.15 3.36
590 595 2.105128 GCAGATGACCCGGTCTCG 59.895 66.667 18.54 10.32 33.15 4.04
591 596 2.105128 CAGATGACCCGGTCTCGC 59.895 66.667 18.54 7.78 33.15 5.03
592 597 2.043852 AGATGACCCGGTCTCGCT 60.044 61.111 18.54 9.81 33.15 4.93
593 598 2.105128 GATGACCCGGTCTCGCTG 59.895 66.667 18.54 0.00 33.15 5.18
594 599 4.148825 ATGACCCGGTCTCGCTGC 62.149 66.667 18.54 0.00 33.15 5.25
615 620 4.371417 ACCTGGGCATGGTGGCTG 62.371 66.667 0.00 0.00 43.20 4.85
616 621 4.051167 CCTGGGCATGGTGGCTGA 62.051 66.667 3.50 0.00 43.20 4.26
617 622 2.753043 CTGGGCATGGTGGCTGAC 60.753 66.667 3.50 0.00 43.20 3.51
618 623 4.365111 TGGGCATGGTGGCTGACC 62.365 66.667 3.50 0.00 46.37 4.02
622 627 3.716195 CATGGTGGCTGACCCGGA 61.716 66.667 0.73 0.00 45.45 5.14
623 628 3.717294 ATGGTGGCTGACCCGGAC 61.717 66.667 0.73 0.00 45.45 4.79
624 629 4.954118 TGGTGGCTGACCCGGACT 62.954 66.667 0.73 0.00 45.45 3.85
625 630 4.083862 GGTGGCTGACCCGGACTC 62.084 72.222 0.73 0.00 39.10 3.36
626 631 4.083862 GTGGCTGACCCGGACTCC 62.084 72.222 0.73 3.49 35.87 3.85
637 642 3.069318 GGACTCCGAGCCTTCCGT 61.069 66.667 0.00 0.00 0.00 4.69
638 643 2.182030 GACTCCGAGCCTTCCGTG 59.818 66.667 0.00 0.00 0.00 4.94
639 644 3.991536 GACTCCGAGCCTTCCGTGC 62.992 68.421 0.00 0.00 0.00 5.34
640 645 3.764466 CTCCGAGCCTTCCGTGCT 61.764 66.667 0.00 0.00 43.03 4.40
673 678 3.003763 GCAGTCGTCCCCCTCCTT 61.004 66.667 0.00 0.00 0.00 3.36
674 679 2.593956 GCAGTCGTCCCCCTCCTTT 61.594 63.158 0.00 0.00 0.00 3.11
675 680 1.597461 CAGTCGTCCCCCTCCTTTC 59.403 63.158 0.00 0.00 0.00 2.62
676 681 1.982938 AGTCGTCCCCCTCCTTTCG 60.983 63.158 0.00 0.00 0.00 3.46
677 682 3.387947 TCGTCCCCCTCCTTTCGC 61.388 66.667 0.00 0.00 0.00 4.70
678 683 4.468689 CGTCCCCCTCCTTTCGCC 62.469 72.222 0.00 0.00 0.00 5.54
679 684 4.468689 GTCCCCCTCCTTTCGCCG 62.469 72.222 0.00 0.00 0.00 6.46
682 687 4.840005 CCCCTCCTTTCGCCGCTC 62.840 72.222 0.00 0.00 0.00 5.03
696 701 3.093278 GCTCGGCGAGTGAATTGG 58.907 61.111 34.41 11.29 31.39 3.16
708 714 2.884639 AGTGAATTGGAGAAAACCACCG 59.115 45.455 0.00 0.00 39.85 4.94
724 730 0.182775 ACCGCATTAAAGCCTAGGGG 59.817 55.000 11.72 1.92 38.18 4.79
794 800 9.947433 TTTTGATCCTAATCATTTGCAGAAAAT 57.053 25.926 0.00 0.00 41.49 1.82
1103 1371 2.314549 AGTCCTGAACATCTCCTCCTCT 59.685 50.000 0.00 0.00 0.00 3.69
1130 1398 2.040145 TGGCATCATCAAGGTCAGTTGA 59.960 45.455 0.00 0.00 40.68 3.18
1178 1446 5.012664 GGGTTAGTGAATTGGGGATTTTGTT 59.987 40.000 0.00 0.00 0.00 2.83
1423 1696 8.977505 GTTTGCTTAATGCTTTGTTTATCAAGA 58.022 29.630 0.00 0.00 43.37 3.02
1581 1871 9.980780 GCTTTGTCTTTGTTTAATTTGCTTTAA 57.019 25.926 0.00 0.00 0.00 1.52
1630 1922 9.747898 TTAGTGGATGGTAGTCATTGTTTATTT 57.252 29.630 0.00 0.00 35.97 1.40
1666 2503 4.425180 TGACTTGTTTACTAGTGGGCAA 57.575 40.909 5.39 6.64 32.36 4.52
1801 2689 5.056480 TGAAAATACGATGGAGTATGGCAG 58.944 41.667 0.00 0.00 37.39 4.85
1806 2694 4.689612 ACGATGGAGTATGGCAGTTAAT 57.310 40.909 0.00 0.00 0.00 1.40
1823 2711 6.926272 GCAGTTAATAGTGGTCTTCATCCTAG 59.074 42.308 0.00 0.00 0.00 3.02
1828 2716 2.755655 AGTGGTCTTCATCCTAGTCACG 59.244 50.000 0.00 0.00 0.00 4.35
2043 2931 8.258007 TGACAGAAAAGAAGAAGAAACTACAGA 58.742 33.333 0.00 0.00 0.00 3.41
2207 3096 4.704540 TGAAGGCAGAGTTGTCAAAGAAAA 59.295 37.500 0.00 0.00 0.00 2.29
2389 3432 2.075338 GAAGGCAGAGCTGTCAAAGAG 58.925 52.381 4.77 0.00 37.73 2.85
2576 4693 8.780249 CAAAAGTCCGAGGAAAAGATAAAGTTA 58.220 33.333 0.00 0.00 0.00 2.24
2579 4696 8.913487 AGTCCGAGGAAAAGATAAAGTTAAAA 57.087 30.769 0.00 0.00 0.00 1.52
2856 5021 8.112822 TCCAACCTTGATGAACCTTTATGAATA 58.887 33.333 0.00 0.00 0.00 1.75
2865 5030 8.701908 ATGAACCTTTATGAATATGAGTGCAT 57.298 30.769 0.00 0.00 38.54 3.96
3062 5228 6.918067 ACATATCGATGAAATGACCCTAGA 57.082 37.500 8.54 0.00 36.48 2.43
3111 5472 6.918067 ACATATCGATGAAATGACCCTAGA 57.082 37.500 8.54 0.00 36.48 2.43
3120 5481 7.201884 CGATGAAATGACCCTAGAGTTTACCTA 60.202 40.741 0.00 0.00 0.00 3.08
3124 5485 5.793034 TGACCCTAGAGTTTACCTAGAGT 57.207 43.478 0.00 0.00 36.58 3.24
3164 5525 7.959940 CATATCGATGAAATGACCCTAGGGTTT 60.960 40.741 34.28 24.23 41.29 3.27
3176 5537 3.587095 GGGTTTACCTTGCGCCTC 58.413 61.111 4.18 0.00 35.85 4.70
3177 5538 1.302993 GGGTTTACCTTGCGCCTCA 60.303 57.895 4.18 0.00 35.85 3.86
3178 5539 0.679960 GGGTTTACCTTGCGCCTCAT 60.680 55.000 4.18 0.00 35.85 2.90
3179 5540 0.733150 GGTTTACCTTGCGCCTCATC 59.267 55.000 4.18 0.00 0.00 2.92
3180 5541 1.679032 GGTTTACCTTGCGCCTCATCT 60.679 52.381 4.18 0.00 0.00 2.90
3181 5542 2.084546 GTTTACCTTGCGCCTCATCTT 58.915 47.619 4.18 0.00 0.00 2.40
3182 5543 1.737838 TTACCTTGCGCCTCATCTTG 58.262 50.000 4.18 0.00 0.00 3.02
3183 5544 0.613260 TACCTTGCGCCTCATCTTGT 59.387 50.000 4.18 0.00 0.00 3.16
3184 5545 0.674895 ACCTTGCGCCTCATCTTGTC 60.675 55.000 4.18 0.00 0.00 3.18
3185 5546 1.699656 CCTTGCGCCTCATCTTGTCG 61.700 60.000 4.18 0.00 0.00 4.35
3186 5547 0.737367 CTTGCGCCTCATCTTGTCGA 60.737 55.000 4.18 0.00 0.00 4.20
3187 5548 0.108186 TTGCGCCTCATCTTGTCGAT 60.108 50.000 4.18 0.00 0.00 3.59
3188 5549 0.744281 TGCGCCTCATCTTGTCGATA 59.256 50.000 4.18 0.00 0.00 2.92
3189 5550 1.341209 TGCGCCTCATCTTGTCGATAT 59.659 47.619 4.18 0.00 0.00 1.63
3190 5551 2.556622 TGCGCCTCATCTTGTCGATATA 59.443 45.455 4.18 0.00 0.00 0.86
3191 5552 3.193479 TGCGCCTCATCTTGTCGATATAT 59.807 43.478 4.18 0.00 0.00 0.86
3192 5553 3.794028 GCGCCTCATCTTGTCGATATATC 59.206 47.826 0.00 2.34 0.00 1.63
3210 5571 5.683876 ATATCGATGATTTGACCCTAGGG 57.316 43.478 27.36 27.36 42.03 3.53
3316 5677 7.179076 TGAAATGACCCTAGAGTTTACCTAC 57.821 40.000 0.00 0.00 0.00 3.18
3394 5902 7.225341 CCTCATCTTGTTGACATATCGATGAAA 59.775 37.037 8.54 0.00 36.39 2.69
3404 5912 6.493458 TGACATATCGATGAAATGACCCTAGA 59.507 38.462 8.54 0.00 36.48 2.43
3413 5961 7.201884 CGATGAAATGACCCTAGAGTTTACCTA 60.202 40.741 0.00 0.00 0.00 3.08
3526 9339 9.686683 AGAGTTTACCTTTGTGCATAATTAGAT 57.313 29.630 0.00 0.00 0.00 1.98
3563 9376 8.603898 TCTCTGGAGTAAAACTGTATTGGATA 57.396 34.615 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.567385 CTCTCCAGCGAGCTCGGC 62.567 72.222 35.10 26.28 40.23 5.54
16 17 3.898509 CCTCTCCAGCGAGCTCGG 61.899 72.222 35.10 20.45 40.23 4.63
17 18 4.567385 GCCTCTCCAGCGAGCTCG 62.567 72.222 31.37 31.37 43.27 5.03
18 19 4.219999 GGCCTCTCCAGCGAGCTC 62.220 72.222 2.73 2.73 35.94 4.09
40 41 4.339809 CAGTGCGTGTGTGCGACG 62.340 66.667 0.00 0.00 39.87 5.12
41 42 4.649954 GCAGTGCGTGTGTGCGAC 62.650 66.667 0.00 0.00 37.81 5.19
43 44 4.943591 GTGCAGTGCGTGTGTGCG 62.944 66.667 11.20 0.00 40.23 5.34
44 45 3.875039 TGTGCAGTGCGTGTGTGC 61.875 61.111 11.20 0.00 37.73 4.57
45 46 2.023181 GTGTGCAGTGCGTGTGTG 59.977 61.111 11.20 0.00 0.00 3.82
46 47 2.435762 TGTGTGCAGTGCGTGTGT 60.436 55.556 11.20 0.00 0.00 3.72
47 48 2.023181 GTGTGTGCAGTGCGTGTG 59.977 61.111 11.20 0.00 0.00 3.82
48 49 2.435762 TGTGTGTGCAGTGCGTGT 60.436 55.556 11.20 0.00 0.00 4.49
49 50 2.023181 GTGTGTGTGCAGTGCGTG 59.977 61.111 11.20 0.00 0.00 5.34
50 51 2.435762 TGTGTGTGTGCAGTGCGT 60.436 55.556 11.20 0.00 0.00 5.24
51 52 2.023181 GTGTGTGTGTGCAGTGCG 59.977 61.111 11.20 0.00 0.00 5.34
52 53 1.226379 GTGTGTGTGTGTGCAGTGC 60.226 57.895 8.58 8.58 0.00 4.40
53 54 0.179192 GTGTGTGTGTGTGTGCAGTG 60.179 55.000 0.00 0.00 0.00 3.66
54 55 1.634757 CGTGTGTGTGTGTGTGCAGT 61.635 55.000 0.00 0.00 0.00 4.40
55 56 1.060779 CGTGTGTGTGTGTGTGCAG 59.939 57.895 0.00 0.00 0.00 4.41
56 57 1.374758 TCGTGTGTGTGTGTGTGCA 60.375 52.632 0.00 0.00 0.00 4.57
57 58 1.060308 GTCGTGTGTGTGTGTGTGC 59.940 57.895 0.00 0.00 0.00 4.57
58 59 1.343484 CGTCGTGTGTGTGTGTGTG 59.657 57.895 0.00 0.00 0.00 3.82
59 60 2.449525 GCGTCGTGTGTGTGTGTGT 61.450 57.895 0.00 0.00 0.00 3.72
60 61 1.960994 TTGCGTCGTGTGTGTGTGTG 61.961 55.000 0.00 0.00 0.00 3.82
61 62 1.692148 CTTGCGTCGTGTGTGTGTGT 61.692 55.000 0.00 0.00 0.00 3.72
62 63 1.012343 CTTGCGTCGTGTGTGTGTG 60.012 57.895 0.00 0.00 0.00 3.82
63 64 2.171079 CCTTGCGTCGTGTGTGTGT 61.171 57.895 0.00 0.00 0.00 3.72
64 65 2.171079 ACCTTGCGTCGTGTGTGTG 61.171 57.895 0.00 0.00 0.00 3.82
65 66 2.171079 CACCTTGCGTCGTGTGTGT 61.171 57.895 0.00 0.00 0.00 3.72
66 67 2.625906 CACCTTGCGTCGTGTGTG 59.374 61.111 0.00 0.00 0.00 3.82
67 68 3.269347 GCACCTTGCGTCGTGTGT 61.269 61.111 0.00 0.00 31.71 3.72
76 77 4.962122 CGCGTGTGTGCACCTTGC 62.962 66.667 15.69 12.03 45.29 4.01
158 163 4.200283 CTCCAGGAGCGCGGTCTC 62.200 72.222 34.07 24.42 0.00 3.36
167 172 2.420890 GCCATCGAGCTCCAGGAG 59.579 66.667 12.81 12.81 0.00 3.69
168 173 3.531207 CGCCATCGAGCTCCAGGA 61.531 66.667 15.71 5.23 38.10 3.86
169 174 4.598894 CCGCCATCGAGCTCCAGG 62.599 72.222 8.47 8.72 38.10 4.45
170 175 2.865598 ATCCGCCATCGAGCTCCAG 61.866 63.158 8.47 0.00 38.10 3.86
171 176 2.839632 ATCCGCCATCGAGCTCCA 60.840 61.111 8.47 0.00 38.10 3.86
172 177 2.356793 CATCCGCCATCGAGCTCC 60.357 66.667 8.47 0.00 38.10 4.70
173 178 3.040763 GCATCCGCCATCGAGCTC 61.041 66.667 2.73 2.73 38.10 4.09
197 202 4.415332 TTCTCCGACGGTGCGCTC 62.415 66.667 14.79 4.47 0.00 5.03
198 203 4.421479 CTTCTCCGACGGTGCGCT 62.421 66.667 14.79 0.00 0.00 5.92
200 205 3.744719 TCCTTCTCCGACGGTGCG 61.745 66.667 14.79 5.99 0.00 5.34
201 206 2.126031 GTCCTTCTCCGACGGTGC 60.126 66.667 14.79 0.00 0.00 5.01
207 212 2.037136 GGTCGTCGTCCTTCTCCGA 61.037 63.158 0.91 0.00 0.00 4.55
208 213 2.484203 GGTCGTCGTCCTTCTCCG 59.516 66.667 0.91 0.00 0.00 4.63
209 214 2.883621 GGGTCGTCGTCCTTCTCC 59.116 66.667 8.42 0.00 0.00 3.71
210 215 2.484203 CGGGTCGTCGTCCTTCTC 59.516 66.667 8.42 0.00 0.00 2.87
211 216 3.745803 GCGGGTCGTCGTCCTTCT 61.746 66.667 8.42 0.00 0.00 2.85
212 217 3.745803 AGCGGGTCGTCGTCCTTC 61.746 66.667 8.42 1.26 0.00 3.46
213 218 4.052229 CAGCGGGTCGTCGTCCTT 62.052 66.667 8.42 0.00 0.00 3.36
236 241 2.740714 GCGGACACCACGATGCTTC 61.741 63.158 0.00 0.00 0.00 3.86
237 242 2.742372 GCGGACACCACGATGCTT 60.742 61.111 0.00 0.00 0.00 3.91
238 243 3.649277 GAGCGGACACCACGATGCT 62.649 63.158 0.00 0.00 34.96 3.79
239 244 3.188786 GAGCGGACACCACGATGC 61.189 66.667 0.00 0.00 0.00 3.91
240 245 2.509336 GGAGCGGACACCACGATG 60.509 66.667 0.00 0.00 0.00 3.84
241 246 2.680352 AGGAGCGGACACCACGAT 60.680 61.111 0.00 0.00 0.00 3.73
242 247 3.371063 GAGGAGCGGACACCACGA 61.371 66.667 0.00 0.00 0.00 4.35
243 248 4.436998 GGAGGAGCGGACACCACG 62.437 72.222 0.00 0.00 0.00 4.94
244 249 2.997897 AGGAGGAGCGGACACCAC 60.998 66.667 0.00 0.00 0.00 4.16
245 250 2.680352 GAGGAGGAGCGGACACCA 60.680 66.667 0.00 0.00 0.00 4.17
246 251 3.827898 CGAGGAGGAGCGGACACC 61.828 72.222 0.00 0.00 0.00 4.16
292 297 2.893895 ATGATCTGCTGCGTGGCG 60.894 61.111 0.00 0.00 34.52 5.69
293 298 2.713770 CATGATCTGCTGCGTGGC 59.286 61.111 0.00 0.00 0.00 5.01
294 299 2.831366 GCCATGATCTGCTGCGTGG 61.831 63.158 0.00 0.00 42.72 4.94
295 300 2.713770 GCCATGATCTGCTGCGTG 59.286 61.111 0.00 0.00 0.00 5.34
296 301 2.515523 GGCCATGATCTGCTGCGT 60.516 61.111 0.00 0.00 0.00 5.24
297 302 2.515290 TGGCCATGATCTGCTGCG 60.515 61.111 0.00 0.00 0.00 5.18
298 303 2.831366 CGTGGCCATGATCTGCTGC 61.831 63.158 21.08 0.00 0.00 5.25
299 304 2.184830 CCGTGGCCATGATCTGCTG 61.185 63.158 27.13 3.48 0.00 4.41
300 305 2.191375 CCGTGGCCATGATCTGCT 59.809 61.111 27.13 0.00 0.00 4.24
301 306 2.182842 GTCCGTGGCCATGATCTGC 61.183 63.158 27.13 1.26 0.00 4.26
302 307 1.524621 GGTCCGTGGCCATGATCTG 60.525 63.158 27.13 9.58 0.00 2.90
303 308 1.995066 TGGTCCGTGGCCATGATCT 60.995 57.895 27.13 0.00 0.00 2.75
304 309 1.819632 GTGGTCCGTGGCCATGATC 60.820 63.158 27.13 18.04 38.40 2.92
305 310 2.272146 GTGGTCCGTGGCCATGAT 59.728 61.111 27.13 0.00 38.40 2.45
306 311 4.386951 CGTGGTCCGTGGCCATGA 62.387 66.667 27.13 15.14 43.75 3.07
312 317 4.373116 CCTGTCCGTGGTCCGTGG 62.373 72.222 0.00 0.00 33.66 4.94
319 324 4.508128 ATACGCGCCTGTCCGTGG 62.508 66.667 5.73 0.00 42.56 4.94
320 325 2.601628 TACATACGCGCCTGTCCGTG 62.602 60.000 16.31 2.40 43.76 4.94
321 326 1.936436 TTACATACGCGCCTGTCCGT 61.936 55.000 16.31 2.72 41.11 4.69
322 327 1.226745 TTACATACGCGCCTGTCCG 60.227 57.895 16.31 0.00 0.00 4.79
323 328 0.179119 AGTTACATACGCGCCTGTCC 60.179 55.000 16.31 9.48 0.00 4.02
324 329 0.921347 CAGTTACATACGCGCCTGTC 59.079 55.000 16.31 5.10 0.00 3.51
325 330 1.082117 GCAGTTACATACGCGCCTGT 61.082 55.000 16.90 16.90 0.00 4.00
326 331 1.081556 TGCAGTTACATACGCGCCTG 61.082 55.000 5.73 6.47 31.40 4.85
327 332 0.806102 CTGCAGTTACATACGCGCCT 60.806 55.000 5.73 0.00 31.40 5.52
328 333 1.636340 CTGCAGTTACATACGCGCC 59.364 57.895 5.73 0.00 31.40 6.53
329 334 1.012234 GCTGCAGTTACATACGCGC 60.012 57.895 16.64 0.00 0.00 6.86
330 335 0.806102 AGGCTGCAGTTACATACGCG 60.806 55.000 16.64 3.53 0.00 6.01
331 336 0.931005 GAGGCTGCAGTTACATACGC 59.069 55.000 16.64 0.00 0.00 4.42
332 337 1.200483 CGAGGCTGCAGTTACATACG 58.800 55.000 16.64 8.15 0.00 3.06
333 338 2.194271 GACGAGGCTGCAGTTACATAC 58.806 52.381 16.64 0.00 0.00 2.39
334 339 1.202256 CGACGAGGCTGCAGTTACATA 60.202 52.381 16.64 0.00 0.00 2.29
335 340 0.458543 CGACGAGGCTGCAGTTACAT 60.459 55.000 16.64 0.00 0.00 2.29
336 341 1.080772 CGACGAGGCTGCAGTTACA 60.081 57.895 16.64 0.00 0.00 2.41
337 342 1.805945 CCGACGAGGCTGCAGTTAC 60.806 63.158 16.64 6.34 0.00 2.50
338 343 1.812686 AACCGACGAGGCTGCAGTTA 61.813 55.000 16.64 0.00 46.52 2.24
339 344 3.165160 AACCGACGAGGCTGCAGTT 62.165 57.895 16.64 3.84 46.52 3.16
340 345 3.575351 GAACCGACGAGGCTGCAGT 62.575 63.158 16.64 0.00 46.52 4.40
341 346 2.811317 GAACCGACGAGGCTGCAG 60.811 66.667 10.11 10.11 46.52 4.41
342 347 3.573772 CTGAACCGACGAGGCTGCA 62.574 63.158 0.50 0.00 46.52 4.41
343 348 2.811317 CTGAACCGACGAGGCTGC 60.811 66.667 0.00 0.00 46.52 5.25
344 349 1.006102 AACTGAACCGACGAGGCTG 60.006 57.895 0.00 0.00 46.52 4.85
345 350 1.006102 CAACTGAACCGACGAGGCT 60.006 57.895 0.00 0.00 46.52 4.58
346 351 2.668280 GCAACTGAACCGACGAGGC 61.668 63.158 0.00 0.00 46.52 4.70
348 353 1.148310 AATGCAACTGAACCGACGAG 58.852 50.000 0.00 0.00 0.00 4.18
349 354 1.262950 CAAATGCAACTGAACCGACGA 59.737 47.619 0.00 0.00 0.00 4.20
350 355 1.673760 CAAATGCAACTGAACCGACG 58.326 50.000 0.00 0.00 0.00 5.12
351 356 1.408422 GCAAATGCAACTGAACCGAC 58.592 50.000 0.00 0.00 41.59 4.79
352 357 3.863681 GCAAATGCAACTGAACCGA 57.136 47.368 0.00 0.00 41.59 4.69
363 368 0.804364 TGGTCTGACGATGCAAATGC 59.196 50.000 1.07 0.00 42.50 3.56
364 369 2.079158 ACTGGTCTGACGATGCAAATG 58.921 47.619 1.07 0.00 0.00 2.32
365 370 2.079158 CACTGGTCTGACGATGCAAAT 58.921 47.619 1.07 0.00 0.00 2.32
366 371 1.511850 CACTGGTCTGACGATGCAAA 58.488 50.000 1.07 0.00 0.00 3.68
367 372 0.950555 GCACTGGTCTGACGATGCAA 60.951 55.000 18.74 0.00 33.27 4.08
368 373 1.374631 GCACTGGTCTGACGATGCA 60.375 57.895 18.74 0.00 33.27 3.96
369 374 0.742281 ATGCACTGGTCTGACGATGC 60.742 55.000 17.52 17.52 0.00 3.91
370 375 1.004595 CATGCACTGGTCTGACGATG 58.995 55.000 1.07 1.33 0.00 3.84
371 376 0.742281 GCATGCACTGGTCTGACGAT 60.742 55.000 14.21 0.00 0.00 3.73
372 377 1.374631 GCATGCACTGGTCTGACGA 60.375 57.895 14.21 0.00 0.00 4.20
373 378 1.668793 TGCATGCACTGGTCTGACG 60.669 57.895 18.46 0.00 0.00 4.35
374 379 1.580845 GGTGCATGCACTGGTCTGAC 61.581 60.000 40.86 23.30 45.52 3.51
375 380 1.302752 GGTGCATGCACTGGTCTGA 60.303 57.895 40.86 7.65 45.52 3.27
376 381 1.601477 TGGTGCATGCACTGGTCTG 60.601 57.895 40.86 0.00 45.52 3.51
377 382 1.601759 GTGGTGCATGCACTGGTCT 60.602 57.895 40.86 0.00 45.52 3.85
378 383 2.629656 GGTGGTGCATGCACTGGTC 61.630 63.158 40.86 28.17 45.52 4.02
379 384 2.598394 GGTGGTGCATGCACTGGT 60.598 61.111 40.86 0.00 45.52 4.00
380 385 2.598099 TGGTGGTGCATGCACTGG 60.598 61.111 40.86 0.00 45.52 4.00
381 386 0.963856 ATCTGGTGGTGCATGCACTG 60.964 55.000 40.86 27.05 45.52 3.66
382 387 0.251474 AATCTGGTGGTGCATGCACT 60.251 50.000 40.86 22.88 45.52 4.40
383 388 1.402968 CTAATCTGGTGGTGCATGCAC 59.597 52.381 37.29 37.29 45.49 4.57
384 389 1.004628 ACTAATCTGGTGGTGCATGCA 59.995 47.619 18.46 18.46 0.00 3.96
385 390 1.755179 ACTAATCTGGTGGTGCATGC 58.245 50.000 11.82 11.82 0.00 4.06
386 391 4.517285 ACTAACTAATCTGGTGGTGCATG 58.483 43.478 0.00 0.00 0.00 4.06
387 392 4.384208 GGACTAACTAATCTGGTGGTGCAT 60.384 45.833 0.00 0.00 0.00 3.96
388 393 3.055385 GGACTAACTAATCTGGTGGTGCA 60.055 47.826 0.00 0.00 0.00 4.57
389 394 3.532542 GGACTAACTAATCTGGTGGTGC 58.467 50.000 0.00 0.00 0.00 5.01
390 395 3.194968 ACGGACTAACTAATCTGGTGGTG 59.805 47.826 0.00 0.00 0.00 4.17
391 396 3.438183 ACGGACTAACTAATCTGGTGGT 58.562 45.455 0.00 0.00 0.00 4.16
392 397 4.643784 AGTACGGACTAACTAATCTGGTGG 59.356 45.833 0.00 0.00 32.65 4.61
393 398 5.503683 CGAGTACGGACTAACTAATCTGGTG 60.504 48.000 0.00 0.00 35.45 4.17
394 399 4.574013 CGAGTACGGACTAACTAATCTGGT 59.426 45.833 0.00 0.00 35.45 4.00
395 400 5.093169 CGAGTACGGACTAACTAATCTGG 57.907 47.826 0.00 0.00 35.45 3.86
410 415 1.579626 GTCGTTCGCTCCGAGTACG 60.580 63.158 11.29 11.29 40.10 3.67
411 416 1.579626 CGTCGTTCGCTCCGAGTAC 60.580 63.158 0.00 0.00 37.14 2.73
412 417 1.737735 TCGTCGTTCGCTCCGAGTA 60.738 57.895 0.00 0.00 37.14 2.59
413 418 3.046087 TCGTCGTTCGCTCCGAGT 61.046 61.111 0.00 0.00 37.14 4.18
414 419 2.573689 GTCGTCGTTCGCTCCGAG 60.574 66.667 0.00 0.00 37.14 4.63
415 420 4.434938 CGTCGTCGTTCGCTCCGA 62.435 66.667 0.00 0.00 39.67 4.55
422 427 3.927163 ATGGTGGGCGTCGTCGTTC 62.927 63.158 3.66 0.00 39.49 3.95
423 428 3.998672 ATGGTGGGCGTCGTCGTT 61.999 61.111 3.66 0.00 39.49 3.85
424 429 4.735132 CATGGTGGGCGTCGTCGT 62.735 66.667 3.66 0.00 39.49 4.34
429 434 3.127533 GAGTGCATGGTGGGCGTC 61.128 66.667 0.00 0.00 0.00 5.19
430 435 4.722700 GGAGTGCATGGTGGGCGT 62.723 66.667 0.00 0.00 0.00 5.68
449 454 3.770040 TGGACATGGGCTCGTCGG 61.770 66.667 0.00 0.00 32.74 4.79
450 455 2.509336 GTGGACATGGGCTCGTCG 60.509 66.667 0.00 0.00 32.74 5.12
451 456 1.153549 GAGTGGACATGGGCTCGTC 60.154 63.158 0.00 0.00 0.00 4.20
452 457 2.660064 GGAGTGGACATGGGCTCGT 61.660 63.158 0.00 0.00 0.00 4.18
453 458 2.187946 GGAGTGGACATGGGCTCG 59.812 66.667 0.00 0.00 0.00 5.03
454 459 2.187946 CGGAGTGGACATGGGCTC 59.812 66.667 0.00 0.00 0.00 4.70
455 460 3.402681 CCGGAGTGGACATGGGCT 61.403 66.667 0.00 0.00 42.00 5.19
467 472 3.471244 CTACTTCTCGCGGCCGGAG 62.471 68.421 29.38 28.42 34.56 4.63
468 473 3.515286 CTACTTCTCGCGGCCGGA 61.515 66.667 29.38 20.79 34.56 5.14
470 475 4.492160 TGCTACTTCTCGCGGCCG 62.492 66.667 24.05 24.05 0.00 6.13
471 476 2.886124 GTGCTACTTCTCGCGGCC 60.886 66.667 6.13 0.00 0.00 6.13
472 477 2.886124 GGTGCTACTTCTCGCGGC 60.886 66.667 6.13 0.00 0.00 6.53
473 478 1.805945 GTGGTGCTACTTCTCGCGG 60.806 63.158 6.13 0.00 0.00 6.46
474 479 2.152699 CGTGGTGCTACTTCTCGCG 61.153 63.158 0.00 0.00 0.00 5.87
475 480 1.805945 CCGTGGTGCTACTTCTCGC 60.806 63.158 0.00 0.00 0.00 5.03
476 481 1.805945 GCCGTGGTGCTACTTCTCG 60.806 63.158 0.00 0.00 0.00 4.04
477 482 0.737715 CTGCCGTGGTGCTACTTCTC 60.738 60.000 0.00 0.00 0.00 2.87
478 483 1.293498 CTGCCGTGGTGCTACTTCT 59.707 57.895 0.00 0.00 0.00 2.85
479 484 2.391389 GCTGCCGTGGTGCTACTTC 61.391 63.158 0.00 0.00 0.00 3.01
480 485 2.358737 GCTGCCGTGGTGCTACTT 60.359 61.111 0.00 0.00 0.00 2.24
481 486 3.177194 TTGCTGCCGTGGTGCTACT 62.177 57.895 0.00 0.00 0.00 2.57
482 487 2.668212 TTGCTGCCGTGGTGCTAC 60.668 61.111 0.00 0.00 0.00 3.58
483 488 2.358615 CTTGCTGCCGTGGTGCTA 60.359 61.111 0.00 0.58 0.00 3.49
486 491 4.641645 TCCCTTGCTGCCGTGGTG 62.642 66.667 0.00 0.00 0.00 4.17
487 492 4.335647 CTCCCTTGCTGCCGTGGT 62.336 66.667 0.00 0.00 0.00 4.16
493 498 4.666253 TGGTGCCTCCCTTGCTGC 62.666 66.667 0.00 0.00 34.77 5.25
494 499 2.674380 GTGGTGCCTCCCTTGCTG 60.674 66.667 0.00 0.00 34.77 4.41
495 500 4.335647 CGTGGTGCCTCCCTTGCT 62.336 66.667 0.00 0.00 34.77 3.91
497 502 3.190738 TTCCGTGGTGCCTCCCTTG 62.191 63.158 0.00 0.00 34.77 3.61
498 503 2.852075 TTCCGTGGTGCCTCCCTT 60.852 61.111 0.00 0.00 34.77 3.95
499 504 3.322466 CTTCCGTGGTGCCTCCCT 61.322 66.667 0.00 0.00 34.77 4.20
500 505 4.410400 CCTTCCGTGGTGCCTCCC 62.410 72.222 0.00 0.00 34.77 4.30
501 506 3.607370 GACCTTCCGTGGTGCCTCC 62.607 68.421 0.00 0.00 41.00 4.30
502 507 2.047179 GACCTTCCGTGGTGCCTC 60.047 66.667 0.00 0.00 41.00 4.70
503 508 4.003788 CGACCTTCCGTGGTGCCT 62.004 66.667 0.00 0.00 41.00 4.75
505 510 4.980805 TGCGACCTTCCGTGGTGC 62.981 66.667 0.00 0.00 41.00 5.01
506 511 2.738521 CTGCGACCTTCCGTGGTG 60.739 66.667 0.00 0.00 41.00 4.17
507 512 4.681978 GCTGCGACCTTCCGTGGT 62.682 66.667 0.00 0.00 44.10 4.16
512 517 4.821589 CCTCCGCTGCGACCTTCC 62.822 72.222 25.45 0.00 0.00 3.46
513 518 3.760035 TCCTCCGCTGCGACCTTC 61.760 66.667 25.45 0.00 0.00 3.46
514 519 4.070552 GTCCTCCGCTGCGACCTT 62.071 66.667 25.45 0.00 0.00 3.50
525 530 4.821589 CTCTTGCCGCCGTCCTCC 62.822 72.222 0.00 0.00 0.00 4.30
534 539 3.414700 GACACCGTGCTCTTGCCG 61.415 66.667 0.00 0.00 38.71 5.69
535 540 3.414700 CGACACCGTGCTCTTGCC 61.415 66.667 0.00 0.00 38.71 4.52
536 541 4.077188 GCGACACCGTGCTCTTGC 62.077 66.667 0.00 0.00 38.24 4.01
537 542 3.414700 GGCGACACCGTGCTCTTG 61.415 66.667 0.00 0.00 38.24 3.02
546 551 1.787847 CTCAATTGACGGCGACACC 59.212 57.895 16.62 0.00 0.00 4.16
547 552 1.132640 GCTCAATTGACGGCGACAC 59.867 57.895 16.62 5.15 0.00 3.67
548 553 0.673333 ATGCTCAATTGACGGCGACA 60.673 50.000 16.62 12.05 0.00 4.35
549 554 0.247814 CATGCTCAATTGACGGCGAC 60.248 55.000 16.62 8.59 0.00 5.19
550 555 0.390998 TCATGCTCAATTGACGGCGA 60.391 50.000 16.62 0.00 0.00 5.54
551 556 0.027194 CTCATGCTCAATTGACGGCG 59.973 55.000 4.80 4.80 0.00 6.46
552 557 0.248377 GCTCATGCTCAATTGACGGC 60.248 55.000 3.38 8.39 36.03 5.68
553 558 1.063616 CTGCTCATGCTCAATTGACGG 59.936 52.381 3.38 0.00 40.48 4.79
554 559 1.531264 GCTGCTCATGCTCAATTGACG 60.531 52.381 3.38 2.41 40.48 4.35
555 560 1.471287 TGCTGCTCATGCTCAATTGAC 59.529 47.619 3.38 2.70 40.48 3.18
556 561 1.743394 CTGCTGCTCATGCTCAATTGA 59.257 47.619 8.12 8.12 40.48 2.57
557 562 1.743394 TCTGCTGCTCATGCTCAATTG 59.257 47.619 0.00 0.00 40.48 2.32
558 563 2.124277 TCTGCTGCTCATGCTCAATT 57.876 45.000 0.00 0.00 40.48 2.32
559 564 1.950216 CATCTGCTGCTCATGCTCAAT 59.050 47.619 0.00 0.00 40.48 2.57
560 565 1.065709 TCATCTGCTGCTCATGCTCAA 60.066 47.619 0.00 0.00 40.48 3.02
561 566 0.539986 TCATCTGCTGCTCATGCTCA 59.460 50.000 0.00 0.00 40.48 4.26
562 567 0.938713 GTCATCTGCTGCTCATGCTC 59.061 55.000 0.00 0.00 40.48 4.26
563 568 0.464013 GGTCATCTGCTGCTCATGCT 60.464 55.000 0.00 0.00 40.48 3.79
564 569 1.445716 GGGTCATCTGCTGCTCATGC 61.446 60.000 0.00 0.32 40.20 4.06
565 570 1.158484 CGGGTCATCTGCTGCTCATG 61.158 60.000 0.00 3.17 0.00 3.07
566 571 1.145598 CGGGTCATCTGCTGCTCAT 59.854 57.895 0.00 0.00 0.00 2.90
567 572 2.580815 CGGGTCATCTGCTGCTCA 59.419 61.111 0.00 0.00 0.00 4.26
568 573 2.202987 CCGGGTCATCTGCTGCTC 60.203 66.667 0.00 0.00 0.00 4.26
569 574 3.005539 ACCGGGTCATCTGCTGCT 61.006 61.111 6.32 0.00 0.00 4.24
570 575 2.512515 GACCGGGTCATCTGCTGC 60.513 66.667 22.10 0.00 32.09 5.25
571 576 1.142748 GAGACCGGGTCATCTGCTG 59.857 63.158 27.87 0.00 34.60 4.41
572 577 2.418910 CGAGACCGGGTCATCTGCT 61.419 63.158 27.87 7.01 34.60 4.24
573 578 2.105128 CGAGACCGGGTCATCTGC 59.895 66.667 27.87 11.02 34.60 4.26
574 579 2.105128 GCGAGACCGGGTCATCTG 59.895 66.667 27.87 15.09 34.60 2.90
575 580 2.043852 AGCGAGACCGGGTCATCT 60.044 61.111 27.87 17.65 34.60 2.90
576 581 2.105128 CAGCGAGACCGGGTCATC 59.895 66.667 27.87 19.62 34.60 2.92
577 582 4.148825 GCAGCGAGACCGGGTCAT 62.149 66.667 27.87 13.63 34.60 3.06
598 603 4.371417 CAGCCACCATGCCCAGGT 62.371 66.667 0.00 0.00 40.85 4.00
599 604 4.051167 TCAGCCACCATGCCCAGG 62.051 66.667 0.00 0.00 0.00 4.45
600 605 2.753043 GTCAGCCACCATGCCCAG 60.753 66.667 0.00 0.00 0.00 4.45
601 606 4.365111 GGTCAGCCACCATGCCCA 62.365 66.667 0.00 0.00 45.98 5.36
608 613 4.083862 GAGTCCGGGTCAGCCACC 62.084 72.222 0.00 0.00 45.97 4.61
609 614 4.083862 GGAGTCCGGGTCAGCCAC 62.084 72.222 0.00 0.00 36.17 5.01
620 625 3.069318 ACGGAAGGCTCGGAGTCC 61.069 66.667 5.89 8.09 0.00 3.85
621 626 2.182030 CACGGAAGGCTCGGAGTC 59.818 66.667 0.18 0.18 0.00 3.36
622 627 4.070552 GCACGGAAGGCTCGGAGT 62.071 66.667 6.90 0.00 0.00 3.85
623 628 3.764466 AGCACGGAAGGCTCGGAG 61.764 66.667 0.00 0.00 36.81 4.63
656 661 2.523453 GAAAGGAGGGGGACGACTGC 62.523 65.000 0.00 0.00 0.00 4.40
657 662 1.597461 GAAAGGAGGGGGACGACTG 59.403 63.158 0.00 0.00 0.00 3.51
658 663 1.982938 CGAAAGGAGGGGGACGACT 60.983 63.158 0.00 0.00 0.00 4.18
659 664 2.577593 CGAAAGGAGGGGGACGAC 59.422 66.667 0.00 0.00 0.00 4.34
660 665 3.387947 GCGAAAGGAGGGGGACGA 61.388 66.667 0.00 0.00 0.00 4.20
661 666 4.468689 GGCGAAAGGAGGGGGACG 62.469 72.222 0.00 0.00 0.00 4.79
662 667 4.468689 CGGCGAAAGGAGGGGGAC 62.469 72.222 0.00 0.00 0.00 4.46
665 670 4.840005 GAGCGGCGAAAGGAGGGG 62.840 72.222 12.98 0.00 0.00 4.79
679 684 1.424493 CTCCAATTCACTCGCCGAGC 61.424 60.000 15.20 0.00 32.04 5.03
680 685 0.173481 TCTCCAATTCACTCGCCGAG 59.827 55.000 13.52 13.52 35.52 4.63
681 686 0.606096 TTCTCCAATTCACTCGCCGA 59.394 50.000 0.00 0.00 0.00 5.54
682 687 1.438651 TTTCTCCAATTCACTCGCCG 58.561 50.000 0.00 0.00 0.00 6.46
683 688 2.095212 GGTTTTCTCCAATTCACTCGCC 60.095 50.000 0.00 0.00 0.00 5.54
684 689 2.552315 TGGTTTTCTCCAATTCACTCGC 59.448 45.455 0.00 0.00 34.24 5.03
696 701 3.242518 GCTTTAATGCGGTGGTTTTCTC 58.757 45.455 0.00 0.00 0.00 2.87
708 714 1.032794 GCACCCCTAGGCTTTAATGC 58.967 55.000 2.05 4.79 36.11 3.56
724 730 6.793492 AATGTAGAAGAGTCTTTTCTGCAC 57.207 37.500 21.07 11.07 45.55 4.57
764 770 8.751242 TCTGCAAATGATTAGGATCAAAATCAA 58.249 29.630 19.76 7.70 44.96 2.57
773 779 8.773033 AGGTATTTTCTGCAAATGATTAGGAT 57.227 30.769 0.00 0.00 35.71 3.24
911 917 3.060740 CAGTTTTTACTCACACGACGGAC 60.061 47.826 0.00 0.00 0.00 4.79
916 922 3.985279 CGATCCAGTTTTTACTCACACGA 59.015 43.478 0.00 0.00 0.00 4.35
1149 1417 4.180723 TCCCCAATTCACTAACCCTAACT 58.819 43.478 0.00 0.00 0.00 2.24
1178 1446 3.369892 GGCTAGGTTCAGATCAAGCTCAA 60.370 47.826 1.14 0.00 35.68 3.02
1581 1871 0.463116 GAACACACTCCAACGGTGGT 60.463 55.000 21.31 0.00 46.11 4.16
1630 1922 4.460263 ACAAGTCATTAAGCACTGACCAA 58.540 39.130 3.80 0.00 42.18 3.67
1801 2689 7.921745 GTGACTAGGATGAAGACCACTATTAAC 59.078 40.741 0.00 0.00 0.00 2.01
1806 2694 3.945921 CGTGACTAGGATGAAGACCACTA 59.054 47.826 0.00 0.00 0.00 2.74
2207 3096 4.757692 TCTCCTTTCTTCTTCTCCTCCTT 58.242 43.478 0.00 0.00 0.00 3.36
2389 3432 4.202151 GCATCTTCTTCTTCTCCTCCTCTC 60.202 50.000 0.00 0.00 0.00 3.20
2546 4663 4.777463 TCTTTTCCTCGGACTTTTGAAGT 58.223 39.130 0.00 0.00 46.38 3.01
2724 4843 3.391296 ACAACACTACTGGATCCAACACT 59.609 43.478 17.00 1.05 0.00 3.55
2791 4936 9.702726 CTCACAAAATACATACATAAAGGTTCG 57.297 33.333 0.00 0.00 0.00 3.95
2856 5021 6.814644 CCACATAACAATCAAAATGCACTCAT 59.185 34.615 0.00 0.00 33.53 2.90
2865 5030 6.036517 GCACAAACACCACATAACAATCAAAA 59.963 34.615 0.00 0.00 0.00 2.44
3062 5228 5.026790 ACAAGATGAGGCTCTAGGTAAACT 58.973 41.667 16.72 0.00 0.00 2.66
3111 5472 6.094325 CGACAAGATGAGACTCTAGGTAAACT 59.906 42.308 3.68 0.00 0.00 2.66
3120 5481 6.312399 GATATGTCGACAAGATGAGACTCT 57.688 41.667 24.13 3.58 32.86 3.24
3164 5525 0.613260 ACAAGATGAGGCGCAAGGTA 59.387 50.000 10.83 0.00 38.28 3.08
3165 5526 0.674895 GACAAGATGAGGCGCAAGGT 60.675 55.000 10.83 0.00 38.28 3.50
3166 5527 1.699656 CGACAAGATGAGGCGCAAGG 61.700 60.000 10.83 0.00 38.28 3.61
3167 5528 0.737367 TCGACAAGATGAGGCGCAAG 60.737 55.000 10.83 0.00 43.44 4.01
3168 5529 0.108186 ATCGACAAGATGAGGCGCAA 60.108 50.000 10.83 0.00 38.36 4.85
3169 5530 0.744281 TATCGACAAGATGAGGCGCA 59.256 50.000 10.83 0.00 40.40 6.09
3170 5531 2.071688 ATATCGACAAGATGAGGCGC 57.928 50.000 0.00 0.00 40.40 6.53
3185 5546 7.437748 CCCTAGGGTCAAATCATCGATATATC 58.562 42.308 20.88 2.34 0.00 1.63
3186 5547 7.366847 CCCTAGGGTCAAATCATCGATATAT 57.633 40.000 20.88 0.00 0.00 0.86
3187 5548 6.791867 CCCTAGGGTCAAATCATCGATATA 57.208 41.667 20.88 0.00 0.00 0.86
3188 5549 5.683876 CCCTAGGGTCAAATCATCGATAT 57.316 43.478 20.88 0.00 0.00 1.63
3206 5567 3.727923 AGATGAGGCTCTAGGTAACCCTA 59.272 47.826 16.72 0.00 42.66 3.53
3207 5568 2.520549 AGATGAGGCTCTAGGTAACCCT 59.479 50.000 16.72 0.00 45.51 4.34
3208 5569 2.965562 AGATGAGGCTCTAGGTAACCC 58.034 52.381 16.72 0.00 37.17 4.11
3209 5570 3.707102 ACAAGATGAGGCTCTAGGTAACC 59.293 47.826 16.72 0.00 37.17 2.85
3210 5571 4.498345 CGACAAGATGAGGCTCTAGGTAAC 60.498 50.000 16.72 2.33 0.00 2.50
3211 5572 3.632604 CGACAAGATGAGGCTCTAGGTAA 59.367 47.826 16.72 0.00 0.00 2.85
3212 5573 3.118000 TCGACAAGATGAGGCTCTAGGTA 60.118 47.826 16.72 0.00 0.00 3.08
3213 5574 2.028130 CGACAAGATGAGGCTCTAGGT 58.972 52.381 16.72 6.81 0.00 3.08
3214 5575 2.302260 TCGACAAGATGAGGCTCTAGG 58.698 52.381 16.72 3.60 0.00 3.02
3316 5677 2.306341 ATGTCGACAAGATGAGGCTG 57.694 50.000 24.13 0.00 0.00 4.85
3394 5902 5.141910 GCTCTAGGTAAACTCTAGGGTCAT 58.858 45.833 0.00 0.00 37.57 3.06
3404 5912 5.026790 ACAAGATGAGGCTCTAGGTAAACT 58.973 41.667 16.72 0.00 0.00 2.66
3413 5961 6.449635 GATATATCGACAAGATGAGGCTCT 57.550 41.667 16.72 0.75 40.40 4.09
3526 9339 1.823610 CTCCAGAGAGCAGATCACACA 59.176 52.381 0.00 0.00 32.13 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.