Multiple sequence alignment - TraesCS5A01G218100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G218100 chr5A 100.000 2749 0 0 883 3631 436112570 436109822 0.000000e+00 5077
1 TraesCS5A01G218100 chr5A 100.000 516 0 0 1 516 436113452 436112937 0.000000e+00 953
2 TraesCS5A01G218100 chr5A 97.927 193 3 1 1692 1883 492468971 492468779 2.090000e-87 333
3 TraesCS5A01G218100 chr5A 98.930 187 1 1 1701 1886 505019435 505019249 2.090000e-87 333
4 TraesCS5A01G218100 chr5A 98.913 184 1 1 1700 1883 299774247 299774065 9.720000e-86 327
5 TraesCS5A01G218100 chr5D 90.127 1104 66 18 1883 2977 334321845 334320776 0.000000e+00 1395
6 TraesCS5A01G218100 chr5D 95.869 823 34 0 883 1705 334322649 334321827 0.000000e+00 1332
7 TraesCS5A01G218100 chr5D 92.875 407 21 6 2972 3374 334320435 334320033 5.220000e-163 584
8 TraesCS5A01G218100 chr5D 94.118 170 7 1 184 353 334323459 334323293 4.650000e-64 255
9 TraesCS5A01G218100 chr5D 95.570 158 7 0 359 516 334323173 334323016 1.670000e-63 254
10 TraesCS5A01G218100 chr5D 88.889 180 18 2 1 179 334336919 334336741 1.700000e-53 220
11 TraesCS5A01G218100 chr5B 93.955 794 42 2 885 1678 391398491 391397704 0.000000e+00 1195
12 TraesCS5A01G218100 chr5B 87.577 652 54 14 2403 3037 391397036 391396395 0.000000e+00 730
13 TraesCS5A01G218100 chr5B 82.648 438 54 15 3069 3497 391396396 391395972 5.730000e-98 368
14 TraesCS5A01G218100 chr5B 85.139 323 38 5 1883 2204 391397665 391397352 4.520000e-84 322
15 TraesCS5A01G218100 chr5B 93.011 186 8 2 333 516 391399032 391398850 2.150000e-67 267
16 TraesCS5A01G218100 chr3A 97.927 193 2 1 1694 1884 125867074 125867266 2.090000e-87 333
17 TraesCS5A01G218100 chr3A 97.906 191 4 0 1693 1883 359345754 359345944 7.510000e-87 331
18 TraesCS5A01G218100 chr7B 98.413 189 2 1 1703 1890 41284856 41284668 7.510000e-87 331
19 TraesCS5A01G218100 chr4B 94.444 216 10 2 1686 1899 239502900 239503115 7.510000e-87 331
20 TraesCS5A01G218100 chr7A 97.423 194 3 2 1695 1887 200208872 200209064 2.700000e-86 329
21 TraesCS5A01G218100 chr2B 96.040 202 8 0 1682 1883 368306367 368306166 2.700000e-86 329


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G218100 chr5A 436109822 436113452 3630 True 3015.0 5077 100.0000 1 3631 2 chr5A.!!$R4 3630
1 TraesCS5A01G218100 chr5D 334320033 334323459 3426 True 764.0 1395 93.7118 184 3374 5 chr5D.!!$R2 3190
2 TraesCS5A01G218100 chr5B 391395972 391399032 3060 True 576.4 1195 88.4660 333 3497 5 chr5B.!!$R1 3164

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.035439 CATAGGGTGAACACGGGCTT 60.035 55.0 0.00 0.00 0.00 4.35 F
54 55 0.108138 ACGTAGCACTCCATCTTGCC 60.108 55.0 0.00 0.00 39.75 4.52 F
1740 1857 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.0 12.44 8.34 40.80 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1734 1851 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.0 0.00 0.0 44.78 4.85 R
1791 1908 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.0 0.00 0.0 0.00 2.74 R
3040 3644 0.179113 TCGCATCGCAGCACTGATTA 60.179 50.0 0.81 0.0 0.00 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.600107 TCATAGGGTGAACACGGGC 59.400 57.895 0.00 0.00 32.78 6.13
19 20 0.907704 TCATAGGGTGAACACGGGCT 60.908 55.000 0.00 0.00 32.78 5.19
20 21 0.035439 CATAGGGTGAACACGGGCTT 60.035 55.000 0.00 0.00 0.00 4.35
21 22 0.252197 ATAGGGTGAACACGGGCTTC 59.748 55.000 0.00 0.00 0.00 3.86
22 23 0.834687 TAGGGTGAACACGGGCTTCT 60.835 55.000 0.00 0.00 0.00 2.85
23 24 0.834687 AGGGTGAACACGGGCTTCTA 60.835 55.000 0.00 0.00 0.00 2.10
24 25 0.391263 GGGTGAACACGGGCTTCTAG 60.391 60.000 0.00 0.00 0.00 2.43
25 26 0.320697 GGTGAACACGGGCTTCTAGT 59.679 55.000 0.00 0.00 0.00 2.57
26 27 1.547372 GGTGAACACGGGCTTCTAGTA 59.453 52.381 0.00 0.00 0.00 1.82
27 28 2.603953 GTGAACACGGGCTTCTAGTAC 58.396 52.381 0.00 0.00 0.00 2.73
28 29 2.230750 GTGAACACGGGCTTCTAGTACT 59.769 50.000 0.00 0.00 0.00 2.73
29 30 2.895404 TGAACACGGGCTTCTAGTACTT 59.105 45.455 0.00 0.00 0.00 2.24
30 31 3.322828 TGAACACGGGCTTCTAGTACTTT 59.677 43.478 0.00 0.00 0.00 2.66
31 32 4.202284 TGAACACGGGCTTCTAGTACTTTT 60.202 41.667 0.00 0.00 0.00 2.27
32 33 3.660865 ACACGGGCTTCTAGTACTTTTG 58.339 45.455 0.00 0.00 0.00 2.44
33 34 3.322828 ACACGGGCTTCTAGTACTTTTGA 59.677 43.478 0.00 0.00 0.00 2.69
34 35 4.202284 ACACGGGCTTCTAGTACTTTTGAA 60.202 41.667 0.00 3.26 0.00 2.69
35 36 4.753107 CACGGGCTTCTAGTACTTTTGAAA 59.247 41.667 0.00 0.00 0.00 2.69
36 37 4.753610 ACGGGCTTCTAGTACTTTTGAAAC 59.246 41.667 0.00 0.00 0.00 2.78
37 38 4.143179 CGGGCTTCTAGTACTTTTGAAACG 60.143 45.833 0.00 5.60 0.00 3.60
38 39 4.753610 GGGCTTCTAGTACTTTTGAAACGT 59.246 41.667 0.00 0.00 0.00 3.99
39 40 5.928264 GGGCTTCTAGTACTTTTGAAACGTA 59.072 40.000 0.00 0.00 0.00 3.57
40 41 6.090493 GGGCTTCTAGTACTTTTGAAACGTAG 59.910 42.308 0.00 0.00 0.00 3.51
41 42 6.400834 GGCTTCTAGTACTTTTGAAACGTAGC 60.401 42.308 0.00 3.50 0.00 3.58
42 43 6.145048 GCTTCTAGTACTTTTGAAACGTAGCA 59.855 38.462 0.00 0.00 0.00 3.49
43 44 6.998258 TCTAGTACTTTTGAAACGTAGCAC 57.002 37.500 0.00 0.00 0.00 4.40
44 45 6.742109 TCTAGTACTTTTGAAACGTAGCACT 58.258 36.000 0.00 0.00 0.00 4.40
45 46 5.902051 AGTACTTTTGAAACGTAGCACTC 57.098 39.130 0.00 0.00 0.00 3.51
46 47 4.748600 AGTACTTTTGAAACGTAGCACTCC 59.251 41.667 0.00 0.00 0.00 3.85
47 48 3.537580 ACTTTTGAAACGTAGCACTCCA 58.462 40.909 0.00 0.00 0.00 3.86
48 49 4.134563 ACTTTTGAAACGTAGCACTCCAT 58.865 39.130 0.00 0.00 0.00 3.41
49 50 4.213482 ACTTTTGAAACGTAGCACTCCATC 59.787 41.667 0.00 0.00 0.00 3.51
50 51 3.678056 TTGAAACGTAGCACTCCATCT 57.322 42.857 0.00 0.00 0.00 2.90
51 52 3.678056 TGAAACGTAGCACTCCATCTT 57.322 42.857 0.00 0.00 0.00 2.40
52 53 3.325870 TGAAACGTAGCACTCCATCTTG 58.674 45.455 0.00 0.00 0.00 3.02
53 54 1.726853 AACGTAGCACTCCATCTTGC 58.273 50.000 0.00 0.00 39.16 4.01
54 55 0.108138 ACGTAGCACTCCATCTTGCC 60.108 55.000 0.00 0.00 39.75 4.52
55 56 0.811616 CGTAGCACTCCATCTTGCCC 60.812 60.000 0.00 0.00 39.75 5.36
56 57 0.543749 GTAGCACTCCATCTTGCCCT 59.456 55.000 0.00 0.00 39.75 5.19
57 58 1.065126 GTAGCACTCCATCTTGCCCTT 60.065 52.381 0.00 0.00 39.75 3.95
58 59 0.407139 AGCACTCCATCTTGCCCTTT 59.593 50.000 0.00 0.00 39.75 3.11
59 60 0.529378 GCACTCCATCTTGCCCTTTG 59.471 55.000 0.00 0.00 32.21 2.77
60 61 1.887956 GCACTCCATCTTGCCCTTTGA 60.888 52.381 0.00 0.00 32.21 2.69
61 62 2.089980 CACTCCATCTTGCCCTTTGAG 58.910 52.381 0.00 0.00 0.00 3.02
62 63 1.988107 ACTCCATCTTGCCCTTTGAGA 59.012 47.619 0.00 0.00 0.00 3.27
63 64 2.579860 ACTCCATCTTGCCCTTTGAGAT 59.420 45.455 0.00 0.00 0.00 2.75
64 65 3.212685 CTCCATCTTGCCCTTTGAGATC 58.787 50.000 0.00 0.00 0.00 2.75
65 66 2.848694 TCCATCTTGCCCTTTGAGATCT 59.151 45.455 0.00 0.00 0.00 2.75
66 67 4.040047 TCCATCTTGCCCTTTGAGATCTA 58.960 43.478 0.00 0.00 0.00 1.98
67 68 4.474651 TCCATCTTGCCCTTTGAGATCTAA 59.525 41.667 0.00 0.00 0.00 2.10
68 69 5.133322 TCCATCTTGCCCTTTGAGATCTAAT 59.867 40.000 0.00 0.00 0.00 1.73
69 70 6.329986 TCCATCTTGCCCTTTGAGATCTAATA 59.670 38.462 0.00 0.00 0.00 0.98
70 71 7.000472 CCATCTTGCCCTTTGAGATCTAATAA 59.000 38.462 0.00 0.00 0.00 1.40
71 72 7.668886 CCATCTTGCCCTTTGAGATCTAATAAT 59.331 37.037 0.00 0.00 0.00 1.28
72 73 8.728833 CATCTTGCCCTTTGAGATCTAATAATC 58.271 37.037 0.00 0.00 0.00 1.75
73 74 8.038862 TCTTGCCCTTTGAGATCTAATAATCT 57.961 34.615 0.00 0.00 38.72 2.40
74 75 7.935755 TCTTGCCCTTTGAGATCTAATAATCTG 59.064 37.037 0.00 0.00 36.13 2.90
75 76 6.000219 TGCCCTTTGAGATCTAATAATCTGC 59.000 40.000 0.00 0.00 36.13 4.26
76 77 6.000219 GCCCTTTGAGATCTAATAATCTGCA 59.000 40.000 0.00 0.00 36.13 4.41
77 78 6.072783 GCCCTTTGAGATCTAATAATCTGCAC 60.073 42.308 0.00 0.00 36.13 4.57
78 79 6.429385 CCCTTTGAGATCTAATAATCTGCACC 59.571 42.308 0.00 0.00 36.13 5.01
79 80 6.994496 CCTTTGAGATCTAATAATCTGCACCA 59.006 38.462 0.00 0.00 36.13 4.17
80 81 7.664731 CCTTTGAGATCTAATAATCTGCACCAT 59.335 37.037 0.00 0.00 36.13 3.55
81 82 8.985315 TTTGAGATCTAATAATCTGCACCATT 57.015 30.769 0.00 0.00 36.13 3.16
82 83 8.613060 TTGAGATCTAATAATCTGCACCATTC 57.387 34.615 0.00 0.00 36.13 2.67
83 84 6.870439 TGAGATCTAATAATCTGCACCATTCG 59.130 38.462 0.00 0.00 36.13 3.34
84 85 6.997655 AGATCTAATAATCTGCACCATTCGA 58.002 36.000 0.00 0.00 34.68 3.71
85 86 7.445121 AGATCTAATAATCTGCACCATTCGAA 58.555 34.615 0.00 0.00 34.68 3.71
86 87 7.601886 AGATCTAATAATCTGCACCATTCGAAG 59.398 37.037 3.35 0.00 34.68 3.79
87 88 6.816136 TCTAATAATCTGCACCATTCGAAGA 58.184 36.000 3.35 0.00 0.00 2.87
88 89 7.445121 TCTAATAATCTGCACCATTCGAAGAT 58.555 34.615 3.35 0.00 35.04 2.40
89 90 8.585018 TCTAATAATCTGCACCATTCGAAGATA 58.415 33.333 3.35 0.00 35.04 1.98
90 91 7.426929 AATAATCTGCACCATTCGAAGATAC 57.573 36.000 3.35 0.00 35.04 2.24
91 92 3.179443 TCTGCACCATTCGAAGATACC 57.821 47.619 3.35 0.00 35.04 2.73
92 93 2.766263 TCTGCACCATTCGAAGATACCT 59.234 45.455 3.35 0.00 35.04 3.08
93 94 3.197766 TCTGCACCATTCGAAGATACCTT 59.802 43.478 3.35 0.00 35.04 3.50
94 95 3.941483 CTGCACCATTCGAAGATACCTTT 59.059 43.478 3.35 0.00 35.04 3.11
95 96 3.938963 TGCACCATTCGAAGATACCTTTC 59.061 43.478 3.35 0.00 35.04 2.62
96 97 3.938963 GCACCATTCGAAGATACCTTTCA 59.061 43.478 3.35 0.00 35.04 2.69
97 98 4.034510 GCACCATTCGAAGATACCTTTCAG 59.965 45.833 3.35 0.00 35.04 3.02
98 99 4.034510 CACCATTCGAAGATACCTTTCAGC 59.965 45.833 3.35 0.00 35.04 4.26
99 100 4.080863 ACCATTCGAAGATACCTTTCAGCT 60.081 41.667 3.35 0.00 35.04 4.24
100 101 4.878397 CCATTCGAAGATACCTTTCAGCTT 59.122 41.667 3.35 0.00 35.04 3.74
101 102 5.220739 CCATTCGAAGATACCTTTCAGCTTG 60.221 44.000 3.35 0.00 35.04 4.01
102 103 4.537135 TCGAAGATACCTTTCAGCTTGT 57.463 40.909 0.00 0.00 31.62 3.16
103 104 5.654603 TCGAAGATACCTTTCAGCTTGTA 57.345 39.130 0.00 0.00 31.62 2.41
104 105 6.222038 TCGAAGATACCTTTCAGCTTGTAT 57.778 37.500 0.00 0.00 31.62 2.29
105 106 6.640518 TCGAAGATACCTTTCAGCTTGTATT 58.359 36.000 0.00 0.00 31.62 1.89
106 107 6.757010 TCGAAGATACCTTTCAGCTTGTATTC 59.243 38.462 0.00 0.00 31.62 1.75
107 108 6.535150 CGAAGATACCTTTCAGCTTGTATTCA 59.465 38.462 0.00 0.00 31.62 2.57
108 109 7.254252 CGAAGATACCTTTCAGCTTGTATTCAG 60.254 40.741 0.00 0.00 31.62 3.02
109 110 6.951971 AGATACCTTTCAGCTTGTATTCAGT 58.048 36.000 0.00 0.00 0.00 3.41
110 111 7.398024 AGATACCTTTCAGCTTGTATTCAGTT 58.602 34.615 0.00 0.00 0.00 3.16
111 112 7.885399 AGATACCTTTCAGCTTGTATTCAGTTT 59.115 33.333 0.00 0.00 0.00 2.66
112 113 6.319141 ACCTTTCAGCTTGTATTCAGTTTC 57.681 37.500 0.00 0.00 0.00 2.78
113 114 5.827797 ACCTTTCAGCTTGTATTCAGTTTCA 59.172 36.000 0.00 0.00 0.00 2.69
114 115 6.491403 ACCTTTCAGCTTGTATTCAGTTTCAT 59.509 34.615 0.00 0.00 0.00 2.57
115 116 7.025963 CCTTTCAGCTTGTATTCAGTTTCATC 58.974 38.462 0.00 0.00 0.00 2.92
116 117 7.094463 CCTTTCAGCTTGTATTCAGTTTCATCT 60.094 37.037 0.00 0.00 0.00 2.90
117 118 7.750229 TTCAGCTTGTATTCAGTTTCATCTT 57.250 32.000 0.00 0.00 0.00 2.40
118 119 7.750229 TCAGCTTGTATTCAGTTTCATCTTT 57.250 32.000 0.00 0.00 0.00 2.52
119 120 7.810658 TCAGCTTGTATTCAGTTTCATCTTTC 58.189 34.615 0.00 0.00 0.00 2.62
120 121 7.445096 TCAGCTTGTATTCAGTTTCATCTTTCA 59.555 33.333 0.00 0.00 0.00 2.69
121 122 7.536622 CAGCTTGTATTCAGTTTCATCTTTCAC 59.463 37.037 0.00 0.00 0.00 3.18
122 123 6.803807 GCTTGTATTCAGTTTCATCTTTCACC 59.196 38.462 0.00 0.00 0.00 4.02
123 124 7.522073 GCTTGTATTCAGTTTCATCTTTCACCA 60.522 37.037 0.00 0.00 0.00 4.17
124 125 8.408043 TTGTATTCAGTTTCATCTTTCACCAT 57.592 30.769 0.00 0.00 0.00 3.55
125 126 9.513906 TTGTATTCAGTTTCATCTTTCACCATA 57.486 29.630 0.00 0.00 0.00 2.74
126 127 9.685276 TGTATTCAGTTTCATCTTTCACCATAT 57.315 29.630 0.00 0.00 0.00 1.78
159 160 7.889589 AGCAAAATACAAATAAACCTTGCTC 57.110 32.000 0.35 0.00 43.43 4.26
160 161 7.670364 AGCAAAATACAAATAAACCTTGCTCT 58.330 30.769 0.35 0.00 43.43 4.09
161 162 7.599998 AGCAAAATACAAATAAACCTTGCTCTG 59.400 33.333 0.35 0.00 43.43 3.35
162 163 7.598493 GCAAAATACAAATAAACCTTGCTCTGA 59.402 33.333 0.00 0.00 36.02 3.27
163 164 9.643693 CAAAATACAAATAAACCTTGCTCTGAT 57.356 29.630 0.00 0.00 0.00 2.90
169 170 9.461312 ACAAATAAACCTTGCTCTGATATTACA 57.539 29.630 0.00 0.00 0.00 2.41
173 174 9.851686 ATAAACCTTGCTCTGATATTACATTGA 57.148 29.630 0.00 0.00 0.00 2.57
174 175 8.757982 AAACCTTGCTCTGATATTACATTGAT 57.242 30.769 0.00 0.00 0.00 2.57
175 176 7.741027 ACCTTGCTCTGATATTACATTGATG 57.259 36.000 0.00 0.00 0.00 3.07
176 177 6.713903 ACCTTGCTCTGATATTACATTGATGG 59.286 38.462 0.00 0.00 0.00 3.51
177 178 6.713903 CCTTGCTCTGATATTACATTGATGGT 59.286 38.462 0.00 0.00 0.00 3.55
178 179 7.308408 CCTTGCTCTGATATTACATTGATGGTG 60.308 40.741 0.00 0.00 0.00 4.17
179 180 6.594744 TGCTCTGATATTACATTGATGGTGT 58.405 36.000 0.00 0.00 0.00 4.16
180 181 7.056006 TGCTCTGATATTACATTGATGGTGTT 58.944 34.615 0.00 0.00 0.00 3.32
181 182 7.012610 TGCTCTGATATTACATTGATGGTGTTG 59.987 37.037 0.00 0.00 0.00 3.33
182 183 7.227314 GCTCTGATATTACATTGATGGTGTTGA 59.773 37.037 0.00 0.00 0.00 3.18
213 214 6.708949 TGAGGATAGTTTCAACCAACAACTAC 59.291 38.462 0.00 0.00 36.16 2.73
269 270 1.825474 GACGAGATTCAACCTCCCTCA 59.175 52.381 0.00 0.00 0.00 3.86
273 274 3.339141 GAGATTCAACCTCCCTCAACAC 58.661 50.000 0.00 0.00 0.00 3.32
320 321 9.886132 ATATAGTACAAAAACTAGGTTGTCCAG 57.114 33.333 10.81 0.00 38.80 3.86
460 577 1.202639 CCAAAAGCAGGGGACAAAACC 60.203 52.381 0.00 0.00 0.00 3.27
500 617 2.081585 AACAGCTTTCCCCACTCCCC 62.082 60.000 0.00 0.00 0.00 4.81
501 618 3.330720 AGCTTTCCCCACTCCCCG 61.331 66.667 0.00 0.00 0.00 5.73
939 1056 2.043248 GCCGTAGACCTCCCTGGA 60.043 66.667 0.00 0.00 39.71 3.86
1065 1182 2.711922 CGAGGTCCCGTTCCAGGAG 61.712 68.421 0.00 0.00 32.84 3.69
1255 1372 1.977009 ACTCTGATCGACGCCACCA 60.977 57.895 0.00 0.00 0.00 4.17
1260 1377 4.388499 ATCGACGCCACCACCACC 62.388 66.667 0.00 0.00 0.00 4.61
1345 1462 1.593265 GCATTGTTCAAGGGGCTGG 59.407 57.895 0.00 0.00 0.00 4.85
1386 1503 1.417288 GGATGGATGCAGAGGAGGCT 61.417 60.000 0.00 0.00 0.00 4.58
1475 1592 5.124457 CCATGAACCATAGTTTTGACCTGAG 59.876 44.000 0.00 0.00 35.94 3.35
1614 1731 5.277828 GGACGCCAAATTCATCTACCATTAC 60.278 44.000 0.00 0.00 0.00 1.89
1657 1774 4.051922 CAGTCTGTTTGTCAGTGTCTACC 58.948 47.826 0.00 0.00 43.97 3.18
1674 1791 6.207810 GTGTCTACCCATGTTTACCAATTTCA 59.792 38.462 0.00 0.00 0.00 2.69
1705 1822 4.430007 GAGTATGCGTTGTAGTCATGGAA 58.570 43.478 0.00 0.00 0.00 3.53
1706 1823 4.433615 AGTATGCGTTGTAGTCATGGAAG 58.566 43.478 0.00 0.00 0.00 3.46
1707 1824 2.093306 TGCGTTGTAGTCATGGAAGG 57.907 50.000 0.00 0.00 0.00 3.46
1708 1825 1.338674 TGCGTTGTAGTCATGGAAGGG 60.339 52.381 0.00 0.00 0.00 3.95
1709 1826 2.012051 GCGTTGTAGTCATGGAAGGGG 61.012 57.143 0.00 0.00 0.00 4.79
1710 1827 1.553248 CGTTGTAGTCATGGAAGGGGA 59.447 52.381 0.00 0.00 0.00 4.81
1711 1828 2.418746 CGTTGTAGTCATGGAAGGGGAG 60.419 54.545 0.00 0.00 0.00 4.30
1712 1829 1.204146 TGTAGTCATGGAAGGGGAGC 58.796 55.000 0.00 0.00 0.00 4.70
1713 1830 0.470341 GTAGTCATGGAAGGGGAGCC 59.530 60.000 0.00 0.00 0.00 4.70
1714 1831 0.343372 TAGTCATGGAAGGGGAGCCT 59.657 55.000 0.00 0.00 0.00 4.58
1715 1832 0.551131 AGTCATGGAAGGGGAGCCTT 60.551 55.000 0.00 0.00 0.00 4.35
1716 1833 0.394899 GTCATGGAAGGGGAGCCTTG 60.395 60.000 0.00 0.00 0.00 3.61
1717 1834 1.076485 CATGGAAGGGGAGCCTTGG 60.076 63.158 0.00 0.00 0.00 3.61
1718 1835 3.001358 ATGGAAGGGGAGCCTTGGC 62.001 63.158 2.97 2.97 0.00 4.52
1719 1836 4.803908 GGAAGGGGAGCCTTGGCG 62.804 72.222 5.95 0.00 0.00 5.69
1727 1844 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
1728 1845 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
1729 1846 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
1730 1847 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
1731 1848 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
1732 1849 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
1733 1850 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
1738 1855 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
1739 1856 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
1740 1857 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
1741 1858 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
1742 1859 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
1743 1860 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
1744 1861 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
1745 1862 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
1746 1863 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
1747 1864 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
1748 1865 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
1749 1866 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
1750 1867 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
1751 1868 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
1752 1869 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
1766 1883 4.494091 CCATGAGGTCATAGGTTCAAGT 57.506 45.455 0.00 0.00 34.26 3.16
1767 1884 4.446371 CCATGAGGTCATAGGTTCAAGTC 58.554 47.826 0.00 0.00 34.26 3.01
1768 1885 4.446371 CATGAGGTCATAGGTTCAAGTCC 58.554 47.826 0.00 0.00 34.26 3.85
1769 1886 3.791320 TGAGGTCATAGGTTCAAGTCCT 58.209 45.455 0.00 0.00 38.91 3.85
1770 1887 3.515502 TGAGGTCATAGGTTCAAGTCCTG 59.484 47.826 0.00 0.00 36.60 3.86
1771 1888 2.840651 AGGTCATAGGTTCAAGTCCTGG 59.159 50.000 0.00 0.00 36.60 4.45
1772 1889 2.838202 GGTCATAGGTTCAAGTCCTGGA 59.162 50.000 0.00 0.00 36.60 3.86
1773 1890 3.263425 GGTCATAGGTTCAAGTCCTGGAA 59.737 47.826 0.00 0.00 36.60 3.53
1774 1891 4.263331 GGTCATAGGTTCAAGTCCTGGAAA 60.263 45.833 0.00 0.00 36.60 3.13
1775 1892 4.695928 GTCATAGGTTCAAGTCCTGGAAAC 59.304 45.833 0.00 0.00 36.60 2.78
1776 1893 4.349636 TCATAGGTTCAAGTCCTGGAAACA 59.650 41.667 0.00 0.00 36.60 2.83
1790 1907 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
1791 1908 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
1792 1909 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
1793 1910 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
1794 1911 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
1795 1912 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
1796 1913 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
1797 1914 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
1798 1915 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
1799 1916 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
1800 1917 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
1801 1918 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
1802 1919 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
1803 1920 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
1804 1921 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
1805 1922 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
1806 1923 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
1807 1924 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
1808 1925 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
1809 1926 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
1810 1927 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
1811 1928 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
1812 1929 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
1813 1930 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
1814 1931 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
1815 1932 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
1816 1933 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
1817 1934 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
1818 1935 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
1819 1936 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
1820 1937 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
1821 1938 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
1822 1939 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
1823 1940 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
1824 1941 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
1825 1942 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
1826 1943 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
1827 1944 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
1832 1949 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
1833 1950 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
1834 1951 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
1835 1952 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
1836 1953 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
1837 1954 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
1838 1955 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
1839 1956 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
1840 1957 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
1841 1958 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
1842 1959 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
1843 1960 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
1844 1961 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
1845 1962 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
1846 1963 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
1847 1964 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
1848 1965 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
1849 1966 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
1850 1967 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
1851 1968 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
1876 1993 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
1877 1994 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
1878 1995 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
1879 1996 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
1880 1997 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
1881 1998 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
1889 2006 0.965363 CCAGGTTGCCCTTATGCGTT 60.965 55.000 0.00 0.00 39.89 4.84
1906 2023 2.550978 CGTTGTAGTCATGGATGGACC 58.449 52.381 0.00 0.00 35.89 4.46
1908 2025 2.153034 TGTAGTCATGGATGGACCGA 57.847 50.000 0.00 0.00 42.61 4.69
1971 2091 8.099537 AGATACAGACATAATCATGATTGGTCC 58.900 37.037 31.00 22.35 37.25 4.46
1996 2116 7.178274 CCTCTGCCTCTATGTAGATCACTATTT 59.822 40.741 0.00 0.00 0.00 1.40
2012 2132 7.692460 TCACTATTTCTCTGCATCATTGTTT 57.308 32.000 0.00 0.00 0.00 2.83
2025 2146 6.183360 TGCATCATTGTTTCAAAGAGTTGAGT 60.183 34.615 0.00 0.00 44.49 3.41
2031 2152 9.226345 CATTGTTTCAAAGAGTTGAGTTAGAAC 57.774 33.333 0.00 0.00 44.49 3.01
2045 2166 8.837389 GTTGAGTTAGAACTGAACCAAATTAGT 58.163 33.333 12.16 0.00 44.11 2.24
2047 2168 9.485206 TGAGTTAGAACTGAACCAAATTAGTAC 57.515 33.333 0.00 0.00 39.88 2.73
2108 2229 4.118410 GAGATGATGTCGATCAAACTGCT 58.882 43.478 0.00 0.00 42.02 4.24
2113 2234 6.110543 TGATGTCGATCAAACTGCTAAATG 57.889 37.500 0.00 0.00 35.55 2.32
2117 2238 6.112734 TGTCGATCAAACTGCTAAATGGTAT 58.887 36.000 0.00 0.00 0.00 2.73
2118 2239 7.269316 TGTCGATCAAACTGCTAAATGGTATA 58.731 34.615 0.00 0.00 0.00 1.47
2119 2240 7.438160 TGTCGATCAAACTGCTAAATGGTATAG 59.562 37.037 0.00 0.00 0.00 1.31
2120 2241 6.929049 TCGATCAAACTGCTAAATGGTATAGG 59.071 38.462 0.00 0.00 0.00 2.57
2121 2242 6.929049 CGATCAAACTGCTAAATGGTATAGGA 59.071 38.462 0.00 0.00 0.00 2.94
2122 2243 7.604164 CGATCAAACTGCTAAATGGTATAGGAT 59.396 37.037 0.00 0.00 0.00 3.24
2178 2299 6.586463 CACTCTGTAACATGCTAATATACCGG 59.414 42.308 0.00 0.00 0.00 5.28
2244 2447 6.483974 TGGCATTTTGAGAAACGAGTTAGTAA 59.516 34.615 0.00 0.00 0.00 2.24
2245 2448 6.795593 GGCATTTTGAGAAACGAGTTAGTAAC 59.204 38.462 4.78 4.78 0.00 2.50
2305 2508 5.554437 ACTAAAGAGCTCCCCTTATAAGC 57.446 43.478 10.93 0.00 36.27 3.09
2344 2553 6.183361 TGACTGTCTCTAGTCTCCCCTTATAG 60.183 46.154 9.51 0.00 45.70 1.31
2374 2583 3.458189 CTTAACTAGGGTCATCTTGCCG 58.542 50.000 0.00 0.00 0.00 5.69
2400 2609 7.642586 GTCATCGTGGTGGTATTTTTAATTAGC 59.357 37.037 0.00 0.00 0.00 3.09
2415 2624 2.500509 TTAGCCTTTGGTTTGCAACG 57.499 45.000 0.00 0.00 0.00 4.10
2417 2626 1.394618 AGCCTTTGGTTTGCAACGTA 58.605 45.000 0.00 0.00 0.00 3.57
2419 2628 1.066454 GCCTTTGGTTTGCAACGTACT 59.934 47.619 0.00 0.00 0.00 2.73
2420 2629 2.291190 GCCTTTGGTTTGCAACGTACTA 59.709 45.455 0.00 0.00 0.00 1.82
2422 2631 3.562557 CCTTTGGTTTGCAACGTACTACT 59.437 43.478 0.00 0.00 0.00 2.57
2424 2633 3.182341 TGGTTTGCAACGTACTACTGT 57.818 42.857 0.00 0.00 0.00 3.55
2425 2634 4.319139 TGGTTTGCAACGTACTACTGTA 57.681 40.909 0.00 0.00 0.00 2.74
2457 2702 5.579718 CAAAGAAGCAAGCTGAGATTATGG 58.420 41.667 0.00 0.00 0.00 2.74
2458 2703 3.212685 AGAAGCAAGCTGAGATTATGGC 58.787 45.455 0.00 0.00 0.00 4.40
2525 2770 6.822676 AGGAAATCTCAAAGTTGATAGCAGAG 59.177 38.462 0.00 0.00 36.46 3.35
2562 2807 1.490693 AACAACTGCGACAGAGCACG 61.491 55.000 12.77 0.00 42.92 5.34
2668 2913 6.664816 TCTGATTCATGGTTAAGAAATGCCTT 59.335 34.615 0.00 0.00 0.00 4.35
2754 3004 1.813102 AGGGGATGATGGTCTCTTCC 58.187 55.000 0.00 0.00 44.07 3.46
2768 3018 1.209504 CTCTTCCTTACAATCGCCCCA 59.790 52.381 0.00 0.00 0.00 4.96
2777 3027 1.143684 ACAATCGCCCCATTGCTATCT 59.856 47.619 0.00 0.00 37.28 1.98
2786 3036 2.310538 CCATTGCTATCTGTTTCCCCC 58.689 52.381 0.00 0.00 0.00 5.40
2788 3038 3.628257 CCATTGCTATCTGTTTCCCCCTT 60.628 47.826 0.00 0.00 0.00 3.95
2789 3039 3.366052 TTGCTATCTGTTTCCCCCTTC 57.634 47.619 0.00 0.00 0.00 3.46
2790 3040 2.274542 TGCTATCTGTTTCCCCCTTCA 58.725 47.619 0.00 0.00 0.00 3.02
2791 3041 2.852449 TGCTATCTGTTTCCCCCTTCAT 59.148 45.455 0.00 0.00 0.00 2.57
2792 3042 3.217626 GCTATCTGTTTCCCCCTTCATG 58.782 50.000 0.00 0.00 0.00 3.07
2793 3043 3.372025 GCTATCTGTTTCCCCCTTCATGT 60.372 47.826 0.00 0.00 0.00 3.21
2794 3044 4.141482 GCTATCTGTTTCCCCCTTCATGTA 60.141 45.833 0.00 0.00 0.00 2.29
2795 3045 4.946160 ATCTGTTTCCCCCTTCATGTAA 57.054 40.909 0.00 0.00 0.00 2.41
2796 3046 4.733077 TCTGTTTCCCCCTTCATGTAAA 57.267 40.909 0.00 0.00 0.00 2.01
2797 3047 5.068215 TCTGTTTCCCCCTTCATGTAAAA 57.932 39.130 0.00 0.00 0.00 1.52
2891 3141 6.138761 GCTGTCAAAATGTAACTTGAGACTG 58.861 40.000 0.00 0.00 32.36 3.51
2927 3185 6.224584 GGAAGTAGGTATTCTGTAATGAGGC 58.775 44.000 0.00 0.00 0.00 4.70
2956 3214 6.509677 GCTCGCATAACCTGATTTAGTGTAAC 60.510 42.308 0.00 0.00 0.00 2.50
3014 3618 4.239304 TGTACTAACCAGTGCATTGTACG 58.761 43.478 8.53 0.00 41.76 3.67
3016 3620 2.289444 ACTAACCAGTGCATTGTACGCT 60.289 45.455 8.53 0.00 32.25 5.07
3025 3629 3.865745 GTGCATTGTACGCTCAGATAAGT 59.134 43.478 0.00 0.00 0.00 2.24
3040 3644 7.520614 GCTCAGATAAGTTTTACTTGCACTTGT 60.521 37.037 2.45 0.00 39.11 3.16
3064 3668 3.126225 TGCTGCGATGCGATGCAA 61.126 55.556 0.00 0.00 43.62 4.08
3087 3691 6.458232 AAGTACACTGTATTCTCTAGCTGG 57.542 41.667 0.00 0.00 0.00 4.85
3120 3727 6.538742 GCAGTTGGAAATTGTAGCTGAGTATA 59.461 38.462 0.00 0.00 35.77 1.47
3121 3728 7.065803 GCAGTTGGAAATTGTAGCTGAGTATAA 59.934 37.037 0.00 0.00 35.77 0.98
3216 3824 9.178758 CTCCTATCTTTTAAGTTGGTTTATGCT 57.821 33.333 0.00 0.00 0.00 3.79
3248 3856 4.156556 CCAAGCTATTTTCTTGCTGCTGTA 59.843 41.667 0.00 0.00 39.54 2.74
3300 3913 7.615757 TCAGATTAGTAGTCTGATCAAACTGGA 59.384 37.037 18.57 0.00 45.19 3.86
3368 3983 8.520351 GTTTTACCATACTATTCAGTTTTGCCT 58.480 33.333 0.00 0.00 36.14 4.75
3374 3989 9.778741 CCATACTATTCAGTTTTGCCTCTAATA 57.221 33.333 0.00 0.00 36.14 0.98
3414 4029 1.006086 TGCCATCATTGCGTTAGACG 58.994 50.000 0.00 0.00 45.88 4.18
3427 4042 3.223953 CGTTAGACGCGTACTATGATGG 58.776 50.000 13.97 0.77 33.65 3.51
3429 4044 4.084380 CGTTAGACGCGTACTATGATGGTA 60.084 45.833 13.97 0.00 33.65 3.25
3430 4045 5.390251 CGTTAGACGCGTACTATGATGGTAT 60.390 44.000 13.97 0.00 33.65 2.73
3432 4047 2.915463 GACGCGTACTATGATGGTATGC 59.085 50.000 19.42 19.42 44.20 3.14
3433 4048 2.557056 ACGCGTACTATGATGGTATGCT 59.443 45.455 24.29 12.85 44.96 3.79
3434 4049 3.005472 ACGCGTACTATGATGGTATGCTT 59.995 43.478 24.29 16.13 44.96 3.91
3440 4055 6.701841 CGTACTATGATGGTATGCTTTGTTCT 59.298 38.462 0.00 0.00 0.00 3.01
3449 4064 7.801716 TGGTATGCTTTGTTCTACCATTATC 57.198 36.000 0.00 0.00 38.89 1.75
3450 4065 7.573710 TGGTATGCTTTGTTCTACCATTATCT 58.426 34.615 0.00 0.00 38.89 1.98
3452 4067 8.560374 GGTATGCTTTGTTCTACCATTATCTTC 58.440 37.037 0.00 0.00 34.91 2.87
3456 4071 4.067972 TGTTCTACCATTATCTTCGGGC 57.932 45.455 0.00 0.00 0.00 6.13
3461 4076 3.094484 ACCATTATCTTCGGGCCAAAA 57.906 42.857 4.39 0.00 0.00 2.44
3483 4098 8.423349 CAAAACCCATTGACCATGTTATATGAT 58.577 33.333 0.00 0.00 31.84 2.45
3505 4120 8.882415 TGATTAAAATACCCTTATCGTCAGAC 57.118 34.615 0.00 0.00 0.00 3.51
3506 4121 7.929785 TGATTAAAATACCCTTATCGTCAGACC 59.070 37.037 0.00 0.00 0.00 3.85
3507 4122 4.684484 AAATACCCTTATCGTCAGACCC 57.316 45.455 0.00 0.00 0.00 4.46
3508 4123 3.614568 ATACCCTTATCGTCAGACCCT 57.385 47.619 0.00 0.00 0.00 4.34
3509 4124 2.249309 ACCCTTATCGTCAGACCCTT 57.751 50.000 0.00 0.00 0.00 3.95
3510 4125 1.831736 ACCCTTATCGTCAGACCCTTG 59.168 52.381 0.00 0.00 0.00 3.61
3511 4126 1.831736 CCCTTATCGTCAGACCCTTGT 59.168 52.381 0.00 0.00 0.00 3.16
3512 4127 2.236395 CCCTTATCGTCAGACCCTTGTT 59.764 50.000 0.00 0.00 0.00 2.83
3513 4128 3.307480 CCCTTATCGTCAGACCCTTGTTT 60.307 47.826 0.00 0.00 0.00 2.83
3514 4129 3.933332 CCTTATCGTCAGACCCTTGTTTC 59.067 47.826 0.00 0.00 0.00 2.78
3515 4130 4.322801 CCTTATCGTCAGACCCTTGTTTCT 60.323 45.833 0.00 0.00 0.00 2.52
3516 4131 3.771577 ATCGTCAGACCCTTGTTTCTT 57.228 42.857 0.00 0.00 0.00 2.52
3517 4132 3.107642 TCGTCAGACCCTTGTTTCTTC 57.892 47.619 0.00 0.00 0.00 2.87
3518 4133 2.143925 CGTCAGACCCTTGTTTCTTCC 58.856 52.381 0.00 0.00 0.00 3.46
3519 4134 2.224305 CGTCAGACCCTTGTTTCTTCCT 60.224 50.000 0.00 0.00 0.00 3.36
3520 4135 3.403968 GTCAGACCCTTGTTTCTTCCTC 58.596 50.000 0.00 0.00 0.00 3.71
3521 4136 3.071747 GTCAGACCCTTGTTTCTTCCTCT 59.928 47.826 0.00 0.00 0.00 3.69
3522 4137 3.716872 TCAGACCCTTGTTTCTTCCTCTT 59.283 43.478 0.00 0.00 0.00 2.85
3523 4138 4.166144 TCAGACCCTTGTTTCTTCCTCTTT 59.834 41.667 0.00 0.00 0.00 2.52
3524 4139 4.889995 CAGACCCTTGTTTCTTCCTCTTTT 59.110 41.667 0.00 0.00 0.00 2.27
3525 4140 5.009110 CAGACCCTTGTTTCTTCCTCTTTTC 59.991 44.000 0.00 0.00 0.00 2.29
3526 4141 5.103898 AGACCCTTGTTTCTTCCTCTTTTCT 60.104 40.000 0.00 0.00 0.00 2.52
3527 4142 6.101296 AGACCCTTGTTTCTTCCTCTTTTCTA 59.899 38.462 0.00 0.00 0.00 2.10
3528 4143 6.299922 ACCCTTGTTTCTTCCTCTTTTCTAG 58.700 40.000 0.00 0.00 0.00 2.43
3529 4144 6.126449 ACCCTTGTTTCTTCCTCTTTTCTAGT 60.126 38.462 0.00 0.00 0.00 2.57
3530 4145 6.205658 CCCTTGTTTCTTCCTCTTTTCTAGTG 59.794 42.308 0.00 0.00 0.00 2.74
3531 4146 6.768381 CCTTGTTTCTTCCTCTTTTCTAGTGT 59.232 38.462 0.00 0.00 0.00 3.55
3532 4147 7.931948 CCTTGTTTCTTCCTCTTTTCTAGTGTA 59.068 37.037 0.00 0.00 0.00 2.90
3533 4148 8.888579 TTGTTTCTTCCTCTTTTCTAGTGTAG 57.111 34.615 0.00 0.00 0.00 2.74
3534 4149 7.442656 TGTTTCTTCCTCTTTTCTAGTGTAGG 58.557 38.462 0.00 0.00 0.00 3.18
3535 4150 7.289317 TGTTTCTTCCTCTTTTCTAGTGTAGGA 59.711 37.037 0.00 0.00 0.00 2.94
3536 4151 7.469537 TTCTTCCTCTTTTCTAGTGTAGGAG 57.530 40.000 0.00 0.00 34.74 3.69
3537 4152 6.791371 TCTTCCTCTTTTCTAGTGTAGGAGA 58.209 40.000 0.00 0.00 34.74 3.71
3538 4153 7.415086 TCTTCCTCTTTTCTAGTGTAGGAGAT 58.585 38.462 0.00 0.00 34.74 2.75
3539 4154 8.558312 TCTTCCTCTTTTCTAGTGTAGGAGATA 58.442 37.037 0.00 0.00 34.74 1.98
3540 4155 8.754991 TTCCTCTTTTCTAGTGTAGGAGATAG 57.245 38.462 0.00 0.00 34.74 2.08
3541 4156 8.103660 TCCTCTTTTCTAGTGTAGGAGATAGA 57.896 38.462 0.00 0.00 0.00 1.98
3542 4157 8.215050 TCCTCTTTTCTAGTGTAGGAGATAGAG 58.785 40.741 0.00 0.00 34.15 2.43
3543 4158 7.996644 CCTCTTTTCTAGTGTAGGAGATAGAGT 59.003 40.741 0.00 0.00 33.36 3.24
3544 4159 9.403583 CTCTTTTCTAGTGTAGGAGATAGAGTT 57.596 37.037 0.00 0.00 32.04 3.01
3545 4160 9.398538 TCTTTTCTAGTGTAGGAGATAGAGTTC 57.601 37.037 0.00 0.00 0.00 3.01
3546 4161 9.179909 CTTTTCTAGTGTAGGAGATAGAGTTCA 57.820 37.037 0.00 0.00 0.00 3.18
3547 4162 9.702253 TTTTCTAGTGTAGGAGATAGAGTTCAT 57.298 33.333 0.00 0.00 0.00 2.57
3549 4164 9.781633 TTCTAGTGTAGGAGATAGAGTTCATAC 57.218 37.037 0.00 0.00 32.76 2.39
3550 4165 8.377034 TCTAGTGTAGGAGATAGAGTTCATACC 58.623 40.741 0.00 0.00 31.51 2.73
3551 4166 6.308566 AGTGTAGGAGATAGAGTTCATACCC 58.691 44.000 0.00 0.00 31.51 3.69
3552 4167 5.477637 GTGTAGGAGATAGAGTTCATACCCC 59.522 48.000 0.00 0.00 31.51 4.95
3553 4168 4.834406 AGGAGATAGAGTTCATACCCCA 57.166 45.455 0.00 0.00 0.00 4.96
3554 4169 5.361630 AGGAGATAGAGTTCATACCCCAT 57.638 43.478 0.00 0.00 0.00 4.00
3555 4170 5.731924 AGGAGATAGAGTTCATACCCCATT 58.268 41.667 0.00 0.00 0.00 3.16
3556 4171 6.153924 AGGAGATAGAGTTCATACCCCATTT 58.846 40.000 0.00 0.00 0.00 2.32
3557 4172 7.313731 AGGAGATAGAGTTCATACCCCATTTA 58.686 38.462 0.00 0.00 0.00 1.40
3558 4173 7.964293 AGGAGATAGAGTTCATACCCCATTTAT 59.036 37.037 0.00 0.00 0.00 1.40
3559 4174 8.606830 GGAGATAGAGTTCATACCCCATTTATT 58.393 37.037 0.00 0.00 0.00 1.40
3561 4176 9.799106 AGATAGAGTTCATACCCCATTTATTTG 57.201 33.333 0.00 0.00 0.00 2.32
3562 4177 8.940397 ATAGAGTTCATACCCCATTTATTTGG 57.060 34.615 0.00 0.00 36.46 3.28
3573 4188 5.186996 CCATTTATTTGGGAACGGATGAG 57.813 43.478 0.00 0.00 32.80 2.90
3574 4189 4.499696 CCATTTATTTGGGAACGGATGAGC 60.500 45.833 0.00 0.00 32.80 4.26
3575 4190 3.358111 TTATTTGGGAACGGATGAGCA 57.642 42.857 0.00 0.00 0.00 4.26
3576 4191 2.214376 ATTTGGGAACGGATGAGCAA 57.786 45.000 0.00 0.00 0.00 3.91
3577 4192 1.988293 TTTGGGAACGGATGAGCAAA 58.012 45.000 0.00 0.00 0.00 3.68
3578 4193 1.988293 TTGGGAACGGATGAGCAAAA 58.012 45.000 0.00 0.00 0.00 2.44
3579 4194 1.988293 TGGGAACGGATGAGCAAAAA 58.012 45.000 0.00 0.00 0.00 1.94
3601 4216 6.825944 AAAATTGGTCTTCTCTTTAGCCTC 57.174 37.500 0.00 0.00 0.00 4.70
3602 4217 5.505181 AATTGGTCTTCTCTTTAGCCTCA 57.495 39.130 0.00 0.00 0.00 3.86
3603 4218 3.963428 TGGTCTTCTCTTTAGCCTCAC 57.037 47.619 0.00 0.00 0.00 3.51
3604 4219 2.231478 TGGTCTTCTCTTTAGCCTCACG 59.769 50.000 0.00 0.00 0.00 4.35
3605 4220 2.492484 GGTCTTCTCTTTAGCCTCACGA 59.508 50.000 0.00 0.00 0.00 4.35
3606 4221 3.503891 GTCTTCTCTTTAGCCTCACGAC 58.496 50.000 0.00 0.00 0.00 4.34
3607 4222 3.191791 GTCTTCTCTTTAGCCTCACGACT 59.808 47.826 0.00 0.00 0.00 4.18
3608 4223 4.395542 GTCTTCTCTTTAGCCTCACGACTA 59.604 45.833 0.00 0.00 0.00 2.59
3609 4224 5.008331 TCTTCTCTTTAGCCTCACGACTAA 58.992 41.667 0.00 0.00 0.00 2.24
3610 4225 5.475909 TCTTCTCTTTAGCCTCACGACTAAA 59.524 40.000 0.00 0.00 36.32 1.85
3615 4230 5.916969 CTTTAGCCTCACGACTAAAGTTTG 58.083 41.667 12.27 0.00 45.28 2.93
3616 4231 3.746045 AGCCTCACGACTAAAGTTTGA 57.254 42.857 0.00 0.00 0.00 2.69
3617 4232 3.391049 AGCCTCACGACTAAAGTTTGAC 58.609 45.455 0.00 0.00 0.00 3.18
3618 4233 3.069729 AGCCTCACGACTAAAGTTTGACT 59.930 43.478 0.00 0.00 0.00 3.41
3619 4234 3.184581 GCCTCACGACTAAAGTTTGACTG 59.815 47.826 0.00 0.00 0.00 3.51
3620 4235 4.369182 CCTCACGACTAAAGTTTGACTGT 58.631 43.478 0.00 0.00 0.00 3.55
3621 4236 4.809426 CCTCACGACTAAAGTTTGACTGTT 59.191 41.667 0.00 0.00 0.00 3.16
3622 4237 5.276868 CCTCACGACTAAAGTTTGACTGTTG 60.277 44.000 0.00 0.00 0.00 3.33
3623 4238 4.569162 TCACGACTAAAGTTTGACTGTTGG 59.431 41.667 0.00 0.00 0.00 3.77
3624 4239 4.331717 CACGACTAAAGTTTGACTGTTGGT 59.668 41.667 0.00 0.00 0.00 3.67
3625 4240 4.569564 ACGACTAAAGTTTGACTGTTGGTC 59.430 41.667 0.00 0.00 44.70 4.02
3626 4241 4.025145 CGACTAAAGTTTGACTGTTGGTCC 60.025 45.833 0.00 0.00 43.89 4.46
3627 4242 4.850680 ACTAAAGTTTGACTGTTGGTCCA 58.149 39.130 0.00 0.00 43.89 4.02
3628 4243 4.638865 ACTAAAGTTTGACTGTTGGTCCAC 59.361 41.667 0.00 0.00 43.89 4.02
3629 4244 2.799126 AGTTTGACTGTTGGTCCACA 57.201 45.000 0.00 0.00 43.89 4.17
3630 4245 2.365582 AGTTTGACTGTTGGTCCACAC 58.634 47.619 0.00 0.00 43.89 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.907704 AGCCCGTGTTCACCCTATGA 60.908 55.000 0.00 0.00 34.65 2.15
1 2 0.035439 AAGCCCGTGTTCACCCTATG 60.035 55.000 0.00 0.00 0.00 2.23
2 3 0.252197 GAAGCCCGTGTTCACCCTAT 59.748 55.000 0.00 0.00 0.00 2.57
3 4 0.834687 AGAAGCCCGTGTTCACCCTA 60.835 55.000 0.00 0.00 0.00 3.53
4 5 0.834687 TAGAAGCCCGTGTTCACCCT 60.835 55.000 0.00 0.00 0.00 4.34
5 6 0.391263 CTAGAAGCCCGTGTTCACCC 60.391 60.000 0.00 0.00 0.00 4.61
6 7 0.320697 ACTAGAAGCCCGTGTTCACC 59.679 55.000 0.00 0.00 0.00 4.02
7 8 2.230750 AGTACTAGAAGCCCGTGTTCAC 59.769 50.000 0.00 0.00 0.00 3.18
8 9 2.522185 AGTACTAGAAGCCCGTGTTCA 58.478 47.619 0.00 0.00 0.00 3.18
9 10 3.589495 AAGTACTAGAAGCCCGTGTTC 57.411 47.619 0.00 0.00 0.00 3.18
10 11 4.062991 CAAAAGTACTAGAAGCCCGTGTT 58.937 43.478 0.00 0.00 0.00 3.32
11 12 3.322828 TCAAAAGTACTAGAAGCCCGTGT 59.677 43.478 0.00 0.00 0.00 4.49
12 13 3.921677 TCAAAAGTACTAGAAGCCCGTG 58.078 45.455 0.00 0.00 0.00 4.94
13 14 4.612264 TTCAAAAGTACTAGAAGCCCGT 57.388 40.909 0.00 0.00 0.00 5.28
14 15 4.143179 CGTTTCAAAAGTACTAGAAGCCCG 60.143 45.833 0.00 2.36 0.00 6.13
15 16 4.753610 ACGTTTCAAAAGTACTAGAAGCCC 59.246 41.667 0.00 0.00 0.00 5.19
16 17 5.919272 ACGTTTCAAAAGTACTAGAAGCC 57.081 39.130 0.00 0.00 0.00 4.35
17 18 6.145048 TGCTACGTTTCAAAAGTACTAGAAGC 59.855 38.462 0.00 2.89 0.00 3.86
18 19 7.381678 AGTGCTACGTTTCAAAAGTACTAGAAG 59.618 37.037 0.00 0.00 33.85 2.85
19 20 7.205297 AGTGCTACGTTTCAAAAGTACTAGAA 58.795 34.615 0.00 0.00 33.85 2.10
20 21 6.742109 AGTGCTACGTTTCAAAAGTACTAGA 58.258 36.000 0.00 0.00 33.85 2.43
21 22 6.089150 GGAGTGCTACGTTTCAAAAGTACTAG 59.911 42.308 4.76 0.00 35.44 2.57
22 23 5.922544 GGAGTGCTACGTTTCAAAAGTACTA 59.077 40.000 4.76 0.00 35.44 1.82
23 24 4.748600 GGAGTGCTACGTTTCAAAAGTACT 59.251 41.667 4.46 4.46 37.57 2.73
24 25 4.508861 TGGAGTGCTACGTTTCAAAAGTAC 59.491 41.667 0.00 0.00 0.00 2.73
25 26 4.695396 TGGAGTGCTACGTTTCAAAAGTA 58.305 39.130 0.00 0.00 0.00 2.24
26 27 3.537580 TGGAGTGCTACGTTTCAAAAGT 58.462 40.909 0.00 0.00 0.00 2.66
27 28 4.452455 AGATGGAGTGCTACGTTTCAAAAG 59.548 41.667 0.00 0.00 0.00 2.27
28 29 4.385825 AGATGGAGTGCTACGTTTCAAAA 58.614 39.130 0.00 0.00 0.00 2.44
29 30 4.002906 AGATGGAGTGCTACGTTTCAAA 57.997 40.909 0.00 0.00 0.00 2.69
30 31 3.678056 AGATGGAGTGCTACGTTTCAA 57.322 42.857 0.00 0.00 0.00 2.69
31 32 3.325870 CAAGATGGAGTGCTACGTTTCA 58.674 45.455 0.00 0.00 0.00 2.69
32 33 2.094417 GCAAGATGGAGTGCTACGTTTC 59.906 50.000 0.00 0.00 37.78 2.78
33 34 2.076863 GCAAGATGGAGTGCTACGTTT 58.923 47.619 0.00 0.00 37.78 3.60
34 35 1.676014 GGCAAGATGGAGTGCTACGTT 60.676 52.381 0.00 0.00 40.70 3.99
35 36 0.108138 GGCAAGATGGAGTGCTACGT 60.108 55.000 0.00 0.00 40.70 3.57
36 37 0.811616 GGGCAAGATGGAGTGCTACG 60.812 60.000 0.00 0.00 40.70 3.51
37 38 0.543749 AGGGCAAGATGGAGTGCTAC 59.456 55.000 0.00 0.00 40.70 3.58
38 39 1.289160 AAGGGCAAGATGGAGTGCTA 58.711 50.000 0.00 0.00 40.70 3.49
39 40 0.407139 AAAGGGCAAGATGGAGTGCT 59.593 50.000 0.00 0.00 40.70 4.40
40 41 0.529378 CAAAGGGCAAGATGGAGTGC 59.471 55.000 0.00 0.00 40.14 4.40
41 42 2.089980 CTCAAAGGGCAAGATGGAGTG 58.910 52.381 0.00 0.00 0.00 3.51
42 43 1.988107 TCTCAAAGGGCAAGATGGAGT 59.012 47.619 0.00 0.00 0.00 3.85
43 44 2.795231 TCTCAAAGGGCAAGATGGAG 57.205 50.000 0.00 0.00 0.00 3.86
44 45 2.848694 AGATCTCAAAGGGCAAGATGGA 59.151 45.455 0.00 0.00 30.04 3.41
45 46 3.294038 AGATCTCAAAGGGCAAGATGG 57.706 47.619 0.00 0.00 30.04 3.51
46 47 8.632906 ATTATTAGATCTCAAAGGGCAAGATG 57.367 34.615 0.00 0.00 30.04 2.90
47 48 8.667737 AGATTATTAGATCTCAAAGGGCAAGAT 58.332 33.333 0.00 0.00 30.67 2.40
48 49 7.935755 CAGATTATTAGATCTCAAAGGGCAAGA 59.064 37.037 0.00 0.00 34.20 3.02
49 50 7.308469 GCAGATTATTAGATCTCAAAGGGCAAG 60.308 40.741 0.00 0.00 34.20 4.01
50 51 6.488006 GCAGATTATTAGATCTCAAAGGGCAA 59.512 38.462 0.00 0.00 34.20 4.52
51 52 6.000219 GCAGATTATTAGATCTCAAAGGGCA 59.000 40.000 0.00 0.00 34.20 5.36
52 53 6.000219 TGCAGATTATTAGATCTCAAAGGGC 59.000 40.000 0.00 0.00 34.20 5.19
53 54 6.429385 GGTGCAGATTATTAGATCTCAAAGGG 59.571 42.308 0.00 0.00 34.20 3.95
54 55 6.994496 TGGTGCAGATTATTAGATCTCAAAGG 59.006 38.462 0.00 0.00 34.20 3.11
55 56 8.618702 ATGGTGCAGATTATTAGATCTCAAAG 57.381 34.615 0.00 0.00 34.20 2.77
56 57 8.985315 AATGGTGCAGATTATTAGATCTCAAA 57.015 30.769 0.00 0.00 34.20 2.69
57 58 7.386025 CGAATGGTGCAGATTATTAGATCTCAA 59.614 37.037 0.00 0.00 34.20 3.02
58 59 6.870439 CGAATGGTGCAGATTATTAGATCTCA 59.130 38.462 0.00 0.00 34.20 3.27
59 60 7.093354 TCGAATGGTGCAGATTATTAGATCTC 58.907 38.462 0.00 0.00 34.20 2.75
60 61 6.997655 TCGAATGGTGCAGATTATTAGATCT 58.002 36.000 0.00 0.00 36.84 2.75
61 62 7.600375 TCTTCGAATGGTGCAGATTATTAGATC 59.400 37.037 0.00 0.00 0.00 2.75
62 63 7.445121 TCTTCGAATGGTGCAGATTATTAGAT 58.555 34.615 0.00 0.00 0.00 1.98
63 64 6.816136 TCTTCGAATGGTGCAGATTATTAGA 58.184 36.000 0.00 0.00 0.00 2.10
64 65 7.664082 ATCTTCGAATGGTGCAGATTATTAG 57.336 36.000 0.00 0.00 0.00 1.73
65 66 7.602644 GGTATCTTCGAATGGTGCAGATTATTA 59.397 37.037 0.00 0.00 0.00 0.98
66 67 6.428159 GGTATCTTCGAATGGTGCAGATTATT 59.572 38.462 0.00 0.00 0.00 1.40
67 68 5.934625 GGTATCTTCGAATGGTGCAGATTAT 59.065 40.000 0.00 0.00 0.00 1.28
68 69 5.070446 AGGTATCTTCGAATGGTGCAGATTA 59.930 40.000 0.00 0.00 0.00 1.75
69 70 4.130118 GGTATCTTCGAATGGTGCAGATT 58.870 43.478 0.00 0.00 0.00 2.40
70 71 3.389329 AGGTATCTTCGAATGGTGCAGAT 59.611 43.478 0.00 0.00 0.00 2.90
71 72 2.766263 AGGTATCTTCGAATGGTGCAGA 59.234 45.455 0.00 0.00 0.00 4.26
72 73 3.185246 AGGTATCTTCGAATGGTGCAG 57.815 47.619 0.00 0.00 0.00 4.41
73 74 3.627395 AAGGTATCTTCGAATGGTGCA 57.373 42.857 0.00 0.00 0.00 4.57
74 75 3.938963 TGAAAGGTATCTTCGAATGGTGC 59.061 43.478 0.00 0.00 31.82 5.01
75 76 4.034510 GCTGAAAGGTATCTTCGAATGGTG 59.965 45.833 0.00 0.00 31.82 4.17
76 77 4.192317 GCTGAAAGGTATCTTCGAATGGT 58.808 43.478 0.00 0.00 31.82 3.55
77 78 4.802876 GCTGAAAGGTATCTTCGAATGG 57.197 45.455 0.00 0.00 31.82 3.16
90 91 6.317789 TGAAACTGAATACAAGCTGAAAGG 57.682 37.500 0.00 0.00 0.00 3.11
91 92 7.814642 AGATGAAACTGAATACAAGCTGAAAG 58.185 34.615 0.00 0.00 0.00 2.62
92 93 7.750229 AGATGAAACTGAATACAAGCTGAAA 57.250 32.000 0.00 0.00 0.00 2.69
93 94 7.750229 AAGATGAAACTGAATACAAGCTGAA 57.250 32.000 0.00 0.00 0.00 3.02
94 95 7.445096 TGAAAGATGAAACTGAATACAAGCTGA 59.555 33.333 0.00 0.00 0.00 4.26
95 96 7.536622 GTGAAAGATGAAACTGAATACAAGCTG 59.463 37.037 0.00 0.00 0.00 4.24
96 97 7.308830 GGTGAAAGATGAAACTGAATACAAGCT 60.309 37.037 0.00 0.00 0.00 3.74
97 98 6.803807 GGTGAAAGATGAAACTGAATACAAGC 59.196 38.462 0.00 0.00 0.00 4.01
98 99 7.874940 TGGTGAAAGATGAAACTGAATACAAG 58.125 34.615 0.00 0.00 0.00 3.16
99 100 7.815840 TGGTGAAAGATGAAACTGAATACAA 57.184 32.000 0.00 0.00 0.00 2.41
100 101 9.685276 ATATGGTGAAAGATGAAACTGAATACA 57.315 29.630 0.00 0.00 0.00 2.29
132 133 9.771534 AGCAAGGTTTATTTGTATTTTGCTAAA 57.228 25.926 6.60 0.00 45.59 1.85
133 134 9.418045 GAGCAAGGTTTATTTGTATTTTGCTAA 57.582 29.630 8.19 0.00 46.88 3.09
134 135 8.802267 AGAGCAAGGTTTATTTGTATTTTGCTA 58.198 29.630 8.19 0.00 46.88 3.49
136 137 7.598493 TCAGAGCAAGGTTTATTTGTATTTTGC 59.402 33.333 0.00 0.00 39.79 3.68
137 138 9.643693 ATCAGAGCAAGGTTTATTTGTATTTTG 57.356 29.630 0.00 0.00 0.00 2.44
143 144 9.461312 TGTAATATCAGAGCAAGGTTTATTTGT 57.539 29.630 0.00 0.00 0.00 2.83
147 148 9.851686 TCAATGTAATATCAGAGCAAGGTTTAT 57.148 29.630 0.00 0.00 0.00 1.40
148 149 9.851686 ATCAATGTAATATCAGAGCAAGGTTTA 57.148 29.630 0.00 0.00 0.00 2.01
149 150 8.627403 CATCAATGTAATATCAGAGCAAGGTTT 58.373 33.333 0.00 0.00 0.00 3.27
150 151 7.230108 CCATCAATGTAATATCAGAGCAAGGTT 59.770 37.037 0.00 0.00 0.00 3.50
151 152 6.713903 CCATCAATGTAATATCAGAGCAAGGT 59.286 38.462 0.00 0.00 0.00 3.50
152 153 6.713903 ACCATCAATGTAATATCAGAGCAAGG 59.286 38.462 0.00 0.00 0.00 3.61
153 154 7.228108 ACACCATCAATGTAATATCAGAGCAAG 59.772 37.037 0.00 0.00 0.00 4.01
154 155 7.056006 ACACCATCAATGTAATATCAGAGCAA 58.944 34.615 0.00 0.00 0.00 3.91
155 156 6.594744 ACACCATCAATGTAATATCAGAGCA 58.405 36.000 0.00 0.00 0.00 4.26
156 157 7.227314 TCAACACCATCAATGTAATATCAGAGC 59.773 37.037 0.00 0.00 0.00 4.09
157 158 8.667076 TCAACACCATCAATGTAATATCAGAG 57.333 34.615 0.00 0.00 0.00 3.35
158 159 9.460019 TTTCAACACCATCAATGTAATATCAGA 57.540 29.630 0.00 0.00 0.00 3.27
159 160 9.507280 GTTTCAACACCATCAATGTAATATCAG 57.493 33.333 0.00 0.00 0.00 2.90
160 161 9.241919 AGTTTCAACACCATCAATGTAATATCA 57.758 29.630 0.00 0.00 0.00 2.15
163 164 9.689976 CAAAGTTTCAACACCATCAATGTAATA 57.310 29.630 0.00 0.00 0.00 0.98
164 165 8.420222 TCAAAGTTTCAACACCATCAATGTAAT 58.580 29.630 0.00 0.00 0.00 1.89
165 166 7.776107 TCAAAGTTTCAACACCATCAATGTAA 58.224 30.769 0.00 0.00 0.00 2.41
166 167 7.340122 TCAAAGTTTCAACACCATCAATGTA 57.660 32.000 0.00 0.00 0.00 2.29
167 168 6.219417 TCAAAGTTTCAACACCATCAATGT 57.781 33.333 0.00 0.00 0.00 2.71
168 169 5.693104 CCTCAAAGTTTCAACACCATCAATG 59.307 40.000 0.00 0.00 0.00 2.82
169 170 5.598005 TCCTCAAAGTTTCAACACCATCAAT 59.402 36.000 0.00 0.00 0.00 2.57
170 171 4.952957 TCCTCAAAGTTTCAACACCATCAA 59.047 37.500 0.00 0.00 0.00 2.57
171 172 4.531854 TCCTCAAAGTTTCAACACCATCA 58.468 39.130 0.00 0.00 0.00 3.07
172 173 5.712152 ATCCTCAAAGTTTCAACACCATC 57.288 39.130 0.00 0.00 0.00 3.51
173 174 6.306987 ACTATCCTCAAAGTTTCAACACCAT 58.693 36.000 0.00 0.00 0.00 3.55
174 175 5.690865 ACTATCCTCAAAGTTTCAACACCA 58.309 37.500 0.00 0.00 0.00 4.17
175 176 6.635030 AACTATCCTCAAAGTTTCAACACC 57.365 37.500 0.00 0.00 32.00 4.16
182 183 7.123547 TGTTGGTTGAAACTATCCTCAAAGTTT 59.876 33.333 0.36 0.36 45.99 2.66
204 205 5.051508 GCTCATTTTGTTGCTGTAGTTGTTG 60.052 40.000 0.00 0.00 0.00 3.33
213 214 6.366604 TGATGTTTATGCTCATTTTGTTGCTG 59.633 34.615 0.00 0.00 0.00 4.41
269 270 9.981460 ATAGGAGGAGAAGAAATTAAATGTGTT 57.019 29.630 0.00 0.00 0.00 3.32
299 300 5.370679 TCCTGGACAACCTAGTTTTTGTAC 58.629 41.667 0.00 4.94 36.06 2.90
300 301 5.633655 TCCTGGACAACCTAGTTTTTGTA 57.366 39.130 0.00 0.00 36.06 2.41
301 302 4.513406 TCCTGGACAACCTAGTTTTTGT 57.487 40.909 0.00 2.20 38.67 2.83
320 321 0.248094 GGCGACGCTTTGCTATTTCC 60.248 55.000 20.77 0.00 31.91 3.13
408 523 3.810896 GTCGCCGGTTTGCCATCC 61.811 66.667 1.90 0.00 34.09 3.51
1255 1372 4.660938 GAAGGCCGGCAAGGTGGT 62.661 66.667 30.85 3.89 43.70 4.16
1362 1479 2.040988 TCTGCATCCATCCCCCGA 60.041 61.111 0.00 0.00 0.00 5.14
1369 1486 0.693430 TCAGCCTCCTCTGCATCCAT 60.693 55.000 0.00 0.00 34.19 3.41
1475 1592 1.750778 CTGAAGAGCTCCTCCACTCTC 59.249 57.143 10.93 0.00 42.41 3.20
1623 1740 1.294780 CAGACTGACCTGAGGCCAC 59.705 63.158 5.01 0.00 36.29 5.01
1657 1774 7.309073 CCCCAAAAATGAAATTGGTAAACATGG 60.309 37.037 0.00 0.00 43.71 3.66
1674 1791 3.161866 ACAACGCATACTCCCCAAAAAT 58.838 40.909 0.00 0.00 0.00 1.82
1709 1826 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
1710 1827 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
1711 1828 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
1712 1829 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
1713 1830 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
1714 1831 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
1715 1832 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
1716 1833 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
1720 1837 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
1721 1838 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
1722 1839 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
1723 1840 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
1724 1841 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
1725 1842 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
1726 1843 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
1727 1844 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
1728 1845 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
1729 1846 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
1730 1847 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
1731 1848 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
1732 1849 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
1733 1850 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
1734 1851 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
1735 1852 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
1745 1862 4.446371 GACTTGAACCTATGACCTCATGG 58.554 47.826 0.00 0.00 37.15 3.66
1746 1863 4.163078 AGGACTTGAACCTATGACCTCATG 59.837 45.833 0.00 0.00 37.15 3.07
1747 1864 4.163078 CAGGACTTGAACCTATGACCTCAT 59.837 45.833 0.00 0.00 40.22 2.90
1748 1865 3.515502 CAGGACTTGAACCTATGACCTCA 59.484 47.826 0.00 0.00 35.84 3.86
1749 1866 3.118592 CCAGGACTTGAACCTATGACCTC 60.119 52.174 0.00 0.00 35.84 3.85
1750 1867 2.840651 CCAGGACTTGAACCTATGACCT 59.159 50.000 0.00 0.00 35.84 3.85
1751 1868 2.838202 TCCAGGACTTGAACCTATGACC 59.162 50.000 0.00 0.00 35.84 4.02
1752 1869 4.553330 TTCCAGGACTTGAACCTATGAC 57.447 45.455 0.00 0.00 35.84 3.06
1753 1870 4.349636 TGTTTCCAGGACTTGAACCTATGA 59.650 41.667 0.00 0.00 35.84 2.15
1754 1871 4.651778 TGTTTCCAGGACTTGAACCTATG 58.348 43.478 0.00 0.00 35.84 2.23
1755 1872 4.807643 GCTGTTTCCAGGACTTGAACCTAT 60.808 45.833 0.00 0.00 39.22 2.57
1756 1873 3.496160 GCTGTTTCCAGGACTTGAACCTA 60.496 47.826 0.00 0.00 39.22 3.08
1757 1874 2.749800 GCTGTTTCCAGGACTTGAACCT 60.750 50.000 0.00 0.00 39.22 3.50
1758 1875 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
1759 1876 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
1760 1877 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
1761 1878 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
1762 1879 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
1763 1880 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
1764 1881 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
1765 1882 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
1766 1883 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
1767 1884 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
1768 1885 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
1780 1897 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
1781 1898 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
1782 1899 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
1783 1900 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
1784 1901 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
1785 1902 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
1786 1903 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
1787 1904 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
1788 1905 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
1789 1906 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
1790 1907 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
1791 1908 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
1792 1909 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
1793 1910 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
1794 1911 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
1795 1912 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
1796 1913 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
1797 1914 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
1798 1915 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
1799 1916 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
1800 1917 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
1801 1918 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
1802 1919 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
1803 1920 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
1804 1921 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
1805 1922 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
1806 1923 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
1816 1933 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
1817 1934 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
1818 1935 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
1819 1936 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
1820 1937 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
1821 1938 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
1822 1939 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
1823 1940 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
1824 1941 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
1825 1942 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
1826 1943 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
1827 1944 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
1828 1945 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
1829 1946 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
1830 1947 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
1831 1948 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
1832 1949 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
1833 1950 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
1834 1951 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
1846 1963 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
1849 1966 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
1850 1967 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
1851 1968 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
1852 1969 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
1858 1975 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
1859 1976 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
1860 1977 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
1861 1978 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
1862 1979 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
1874 1991 2.081462 ACTACAACGCATAAGGGCAAC 58.919 47.619 0.00 0.00 0.00 4.17
1875 1992 2.289756 TGACTACAACGCATAAGGGCAA 60.290 45.455 0.00 0.00 0.00 4.52
1876 1993 1.276705 TGACTACAACGCATAAGGGCA 59.723 47.619 0.00 0.00 0.00 5.36
1877 1994 2.018542 TGACTACAACGCATAAGGGC 57.981 50.000 0.00 0.00 0.00 5.19
1878 1995 2.872245 CCATGACTACAACGCATAAGGG 59.128 50.000 0.00 0.00 0.00 3.95
1879 1996 3.792401 TCCATGACTACAACGCATAAGG 58.208 45.455 0.00 0.00 0.00 2.69
1880 1997 4.212004 CCATCCATGACTACAACGCATAAG 59.788 45.833 0.00 0.00 0.00 1.73
1881 1998 4.126437 CCATCCATGACTACAACGCATAA 58.874 43.478 0.00 0.00 0.00 1.90
1889 2006 2.153034 TCGGTCCATCCATGACTACA 57.847 50.000 0.00 0.00 35.57 2.74
1942 2062 9.498176 CCAATCATGATTATGTCTGTATCTCAA 57.502 33.333 20.32 0.00 35.73 3.02
1943 2063 8.654094 ACCAATCATGATTATGTCTGTATCTCA 58.346 33.333 20.32 0.00 35.73 3.27
1947 2067 7.982252 AGGACCAATCATGATTATGTCTGTAT 58.018 34.615 30.09 19.56 34.66 2.29
1958 2078 2.106166 GAGGCAGAGGACCAATCATGAT 59.894 50.000 1.18 1.18 0.00 2.45
1964 2084 2.769209 ACATAGAGGCAGAGGACCAAT 58.231 47.619 0.00 0.00 0.00 3.16
1971 2091 7.701539 AATAGTGATCTACATAGAGGCAGAG 57.298 40.000 0.00 0.00 35.50 3.35
1996 2116 5.766670 ACTCTTTGAAACAATGATGCAGAGA 59.233 36.000 12.44 0.00 31.54 3.10
2012 2132 6.761714 GGTTCAGTTCTAACTCAACTCTTTGA 59.238 38.462 9.10 0.00 39.57 2.69
2025 2146 9.410556 GTACGTACTAATTTGGTTCAGTTCTAA 57.589 33.333 18.47 0.00 0.00 2.10
2031 2152 6.367969 AGCAAGTACGTACTAATTTGGTTCAG 59.632 38.462 27.59 7.86 34.99 3.02
2044 2165 4.382160 GTCTCACTTTGAGCAAGTACGTAC 59.618 45.833 18.10 18.10 44.60 3.67
2045 2166 4.277672 AGTCTCACTTTGAGCAAGTACGTA 59.722 41.667 0.00 0.00 44.60 3.57
2046 2167 3.068307 AGTCTCACTTTGAGCAAGTACGT 59.932 43.478 0.00 0.00 44.60 3.57
2047 2168 3.643763 AGTCTCACTTTGAGCAAGTACG 58.356 45.455 0.00 0.00 44.60 3.67
2097 2218 8.725148 CATCCTATACCATTTAGCAGTTTGATC 58.275 37.037 0.00 0.00 0.00 2.92
2120 2241 9.319143 GTGCTATACTACCAAATGGATATCATC 57.681 37.037 6.42 0.00 38.94 2.92
2121 2242 8.825774 TGTGCTATACTACCAAATGGATATCAT 58.174 33.333 6.42 0.00 38.94 2.45
2122 2243 8.201242 TGTGCTATACTACCAAATGGATATCA 57.799 34.615 6.42 0.00 38.94 2.15
2134 2255 4.442706 AGTGTGCATTGTGCTATACTACC 58.557 43.478 3.41 0.00 45.31 3.18
2136 2257 5.105351 ACAGAGTGTGCATTGTGCTATACTA 60.105 40.000 3.41 0.00 45.31 1.82
2148 2269 3.063510 AGCATGTTACAGAGTGTGCAT 57.936 42.857 9.98 0.00 35.17 3.96
2178 2299 3.926616 TGCTAGTAGAAACAGTTCAGGC 58.073 45.455 0.00 0.00 36.09 4.85
2244 2447 5.472301 AAATACAGGAATGAGATTGGGGT 57.528 39.130 0.00 0.00 0.00 4.95
2245 2448 9.236006 CTATAAAATACAGGAATGAGATTGGGG 57.764 37.037 0.00 0.00 0.00 4.96
2273 2476 3.889538 GGAGCTCTTTAGTTGGTTGGTTT 59.110 43.478 14.64 0.00 0.00 3.27
2274 2477 3.487372 GGAGCTCTTTAGTTGGTTGGTT 58.513 45.455 14.64 0.00 0.00 3.67
2275 2478 2.224793 GGGAGCTCTTTAGTTGGTTGGT 60.225 50.000 14.64 0.00 0.00 3.67
2276 2479 2.437413 GGGAGCTCTTTAGTTGGTTGG 58.563 52.381 14.64 0.00 0.00 3.77
2277 2480 2.040412 AGGGGAGCTCTTTAGTTGGTTG 59.960 50.000 14.64 0.00 0.00 3.77
2328 2537 6.152154 GCTCTTTAGCTATAAGGGGAGACTAG 59.848 46.154 13.83 0.00 45.85 2.57
2374 2583 7.642586 GCTAATTAAAAATACCACCACGATGAC 59.357 37.037 0.00 0.00 0.00 3.06
2400 2609 3.562557 AGTAGTACGTTGCAAACCAAAGG 59.437 43.478 0.00 0.00 46.28 3.11
2420 2629 8.778358 GCTTGCTTCTTTGCTATATAATACAGT 58.222 33.333 0.00 0.00 0.00 3.55
2422 2631 8.777413 CAGCTTGCTTCTTTGCTATATAATACA 58.223 33.333 0.00 0.00 34.10 2.29
2424 2633 9.212641 CTCAGCTTGCTTCTTTGCTATATAATA 57.787 33.333 0.00 0.00 34.10 0.98
2425 2634 7.935755 TCTCAGCTTGCTTCTTTGCTATATAAT 59.064 33.333 0.00 0.00 34.10 1.28
2457 2702 4.384940 TGCAAAATAAGGGAAAAACCAGC 58.615 39.130 0.00 0.00 41.20 4.85
2458 2703 7.509141 AATTGCAAAATAAGGGAAAAACCAG 57.491 32.000 1.71 0.00 41.20 4.00
2562 2807 1.420430 TGGTCCATATTCTCCGACCC 58.580 55.000 2.80 0.00 43.50 4.46
2568 2813 4.256920 CCGGATGATTGGTCCATATTCTC 58.743 47.826 0.00 0.00 35.41 2.87
2668 2913 0.758123 TGGTCATATGGATGCTCGCA 59.242 50.000 2.13 0.00 32.62 5.10
2754 3004 1.392589 AGCAATGGGGCGATTGTAAG 58.607 50.000 8.98 0.00 39.27 2.34
2768 3018 3.269381 TGAAGGGGGAAACAGATAGCAAT 59.731 43.478 0.00 0.00 0.00 3.56
2777 3027 5.398236 TCATTTTACATGAAGGGGGAAACA 58.602 37.500 0.00 0.00 0.00 2.83
2786 3036 6.936900 ACCGGGAGATATCATTTTACATGAAG 59.063 38.462 6.32 0.00 0.00 3.02
2788 3038 6.042666 TCACCGGGAGATATCATTTTACATGA 59.957 38.462 6.32 0.00 0.00 3.07
2789 3039 6.230472 TCACCGGGAGATATCATTTTACATG 58.770 40.000 6.32 0.00 0.00 3.21
2790 3040 6.433847 TCACCGGGAGATATCATTTTACAT 57.566 37.500 6.32 0.00 0.00 2.29
2791 3041 5.880164 TCACCGGGAGATATCATTTTACA 57.120 39.130 6.32 0.00 0.00 2.41
2792 3042 6.766467 ACTTTCACCGGGAGATATCATTTTAC 59.234 38.462 6.32 0.00 0.00 2.01
2793 3043 6.895782 ACTTTCACCGGGAGATATCATTTTA 58.104 36.000 6.32 0.00 0.00 1.52
2794 3044 5.755849 ACTTTCACCGGGAGATATCATTTT 58.244 37.500 6.32 0.00 0.00 1.82
2795 3045 5.373812 ACTTTCACCGGGAGATATCATTT 57.626 39.130 6.32 0.00 0.00 2.32
2796 3046 5.373812 AACTTTCACCGGGAGATATCATT 57.626 39.130 6.32 0.00 0.00 2.57
2797 3047 5.104527 TCAAACTTTCACCGGGAGATATCAT 60.105 40.000 6.32 0.00 0.00 2.45
2891 3141 2.224793 ACCTACTTCCCTGAGGCAAAAC 60.225 50.000 0.00 0.00 33.28 2.43
3014 3618 6.487689 AGTGCAAGTAAAACTTATCTGAGC 57.512 37.500 0.00 0.00 36.03 4.26
3016 3620 7.801716 ACAAGTGCAAGTAAAACTTATCTGA 57.198 32.000 0.00 0.00 36.03 3.27
3040 3644 0.179113 TCGCATCGCAGCACTGATTA 60.179 50.000 0.81 0.00 0.00 1.75
3064 3668 5.163499 GCCAGCTAGAGAATACAGTGTACTT 60.163 44.000 4.80 1.63 0.00 2.24
3155 3762 2.619177 CAAACATGTTTGGGACACGGTA 59.381 45.455 34.07 0.00 44.47 4.02
3157 3764 2.132740 CAAACATGTTTGGGACACGG 57.867 50.000 34.07 13.50 44.47 4.94
3216 3824 7.039784 AGCAAGAAAATAGCTTGGACATGTTTA 60.040 33.333 0.00 0.00 42.23 2.01
3318 3933 7.816411 ACCCCTTATGTATAAAGCTTCTCAAT 58.184 34.615 0.00 0.00 0.00 2.57
3326 3941 7.885009 TGGTAAAACCCCTTATGTATAAAGC 57.115 36.000 0.00 0.00 37.50 3.51
3406 4021 3.223953 CCATCATAGTACGCGTCTAACG 58.776 50.000 18.63 12.44 45.88 3.18
3414 4029 4.750098 ACAAAGCATACCATCATAGTACGC 59.250 41.667 0.00 0.00 0.00 4.42
3416 4031 8.979574 GTAGAACAAAGCATACCATCATAGTAC 58.020 37.037 0.00 0.00 0.00 2.73
3422 4037 5.172687 TGGTAGAACAAAGCATACCATCA 57.827 39.130 0.00 0.00 42.05 3.07
3426 4041 8.451908 AAGATAATGGTAGAACAAAGCATACC 57.548 34.615 0.00 0.00 38.53 2.73
3427 4042 8.276325 CGAAGATAATGGTAGAACAAAGCATAC 58.724 37.037 0.00 0.00 34.12 2.39
3429 4044 6.260936 CCGAAGATAATGGTAGAACAAAGCAT 59.739 38.462 0.00 0.00 36.66 3.79
3430 4045 5.584649 CCGAAGATAATGGTAGAACAAAGCA 59.415 40.000 0.00 0.00 0.00 3.91
3432 4047 5.007724 GCCCGAAGATAATGGTAGAACAAAG 59.992 44.000 0.00 0.00 0.00 2.77
3433 4048 4.879545 GCCCGAAGATAATGGTAGAACAAA 59.120 41.667 0.00 0.00 0.00 2.83
3434 4049 4.448210 GCCCGAAGATAATGGTAGAACAA 58.552 43.478 0.00 0.00 0.00 2.83
3440 4055 3.935818 TTTGGCCCGAAGATAATGGTA 57.064 42.857 0.00 0.00 0.00 3.25
3456 4071 3.767902 AACATGGTCAATGGGTTTTGG 57.232 42.857 0.00 0.00 40.94 3.28
3461 4076 9.653516 TTTAATCATATAACATGGTCAATGGGT 57.346 29.630 0.00 0.00 40.94 4.51
3483 4098 6.384886 AGGGTCTGACGATAAGGGTATTTTAA 59.615 38.462 1.07 0.00 0.00 1.52
3497 4112 2.224209 GGAAGAAACAAGGGTCTGACGA 60.224 50.000 1.07 0.00 0.00 4.20
3498 4113 2.143925 GGAAGAAACAAGGGTCTGACG 58.856 52.381 1.07 0.00 0.00 4.35
3499 4114 3.071747 AGAGGAAGAAACAAGGGTCTGAC 59.928 47.826 0.00 0.00 0.00 3.51
3500 4115 3.318313 AGAGGAAGAAACAAGGGTCTGA 58.682 45.455 0.00 0.00 0.00 3.27
3501 4116 3.778954 AGAGGAAGAAACAAGGGTCTG 57.221 47.619 0.00 0.00 0.00 3.51
3502 4117 4.797912 AAAGAGGAAGAAACAAGGGTCT 57.202 40.909 0.00 0.00 0.00 3.85
3503 4118 5.133941 AGAAAAGAGGAAGAAACAAGGGTC 58.866 41.667 0.00 0.00 0.00 4.46
3504 4119 5.130705 AGAAAAGAGGAAGAAACAAGGGT 57.869 39.130 0.00 0.00 0.00 4.34
3505 4120 6.205658 CACTAGAAAAGAGGAAGAAACAAGGG 59.794 42.308 0.00 0.00 0.00 3.95
3506 4121 6.768381 ACACTAGAAAAGAGGAAGAAACAAGG 59.232 38.462 0.00 0.00 0.00 3.61
3507 4122 7.793927 ACACTAGAAAAGAGGAAGAAACAAG 57.206 36.000 0.00 0.00 0.00 3.16
3508 4123 7.931948 CCTACACTAGAAAAGAGGAAGAAACAA 59.068 37.037 0.00 0.00 0.00 2.83
3509 4124 7.289317 TCCTACACTAGAAAAGAGGAAGAAACA 59.711 37.037 0.00 0.00 30.16 2.83
3510 4125 7.668492 TCCTACACTAGAAAAGAGGAAGAAAC 58.332 38.462 0.00 0.00 30.16 2.78
3511 4126 7.728981 TCTCCTACACTAGAAAAGAGGAAGAAA 59.271 37.037 0.00 0.00 32.81 2.52
3512 4127 7.239438 TCTCCTACACTAGAAAAGAGGAAGAA 58.761 38.462 0.00 0.00 32.81 2.52
3513 4128 6.791371 TCTCCTACACTAGAAAAGAGGAAGA 58.209 40.000 0.00 0.00 32.81 2.87
3514 4129 7.654022 ATCTCCTACACTAGAAAAGAGGAAG 57.346 40.000 0.00 0.00 32.81 3.46
3515 4130 8.558312 TCTATCTCCTACACTAGAAAAGAGGAA 58.442 37.037 0.00 0.00 32.81 3.36
3516 4131 8.103660 TCTATCTCCTACACTAGAAAAGAGGA 57.896 38.462 0.00 0.33 0.00 3.71
3517 4132 7.996644 ACTCTATCTCCTACACTAGAAAAGAGG 59.003 40.741 0.00 0.00 38.74 3.69
3518 4133 8.974060 ACTCTATCTCCTACACTAGAAAAGAG 57.026 38.462 0.00 0.00 39.48 2.85
3519 4134 9.398538 GAACTCTATCTCCTACACTAGAAAAGA 57.601 37.037 0.00 0.00 0.00 2.52
3520 4135 9.179909 TGAACTCTATCTCCTACACTAGAAAAG 57.820 37.037 0.00 0.00 0.00 2.27
3521 4136 9.702253 ATGAACTCTATCTCCTACACTAGAAAA 57.298 33.333 0.00 0.00 0.00 2.29
3523 4138 9.781633 GTATGAACTCTATCTCCTACACTAGAA 57.218 37.037 0.00 0.00 0.00 2.10
3524 4139 8.377034 GGTATGAACTCTATCTCCTACACTAGA 58.623 40.741 0.00 0.00 0.00 2.43
3525 4140 7.608761 GGGTATGAACTCTATCTCCTACACTAG 59.391 44.444 0.00 0.00 0.00 2.57
3526 4141 7.460071 GGGTATGAACTCTATCTCCTACACTA 58.540 42.308 0.00 0.00 0.00 2.74
3527 4142 6.308566 GGGTATGAACTCTATCTCCTACACT 58.691 44.000 0.00 0.00 0.00 3.55
3528 4143 5.477637 GGGGTATGAACTCTATCTCCTACAC 59.522 48.000 0.00 0.00 0.00 2.90
3529 4144 5.135533 TGGGGTATGAACTCTATCTCCTACA 59.864 44.000 0.00 0.00 0.00 2.74
3530 4145 5.642165 TGGGGTATGAACTCTATCTCCTAC 58.358 45.833 0.00 0.00 0.00 3.18
3531 4146 5.942977 TGGGGTATGAACTCTATCTCCTA 57.057 43.478 0.00 0.00 0.00 2.94
3532 4147 4.834406 TGGGGTATGAACTCTATCTCCT 57.166 45.455 0.00 0.00 0.00 3.69
3533 4148 6.441088 AAATGGGGTATGAACTCTATCTCC 57.559 41.667 0.00 0.00 0.00 3.71
3535 4150 9.799106 CAAATAAATGGGGTATGAACTCTATCT 57.201 33.333 0.00 0.00 0.00 1.98
3536 4151 9.014297 CCAAATAAATGGGGTATGAACTCTATC 57.986 37.037 0.00 0.00 36.79 2.08
3537 4152 8.940397 CCAAATAAATGGGGTATGAACTCTAT 57.060 34.615 0.00 0.00 36.79 1.98
3551 4166 4.499696 GCTCATCCGTTCCCAAATAAATGG 60.500 45.833 0.00 0.00 40.35 3.16
3552 4167 4.097741 TGCTCATCCGTTCCCAAATAAATG 59.902 41.667 0.00 0.00 0.00 2.32
3553 4168 4.277476 TGCTCATCCGTTCCCAAATAAAT 58.723 39.130 0.00 0.00 0.00 1.40
3554 4169 3.691575 TGCTCATCCGTTCCCAAATAAA 58.308 40.909 0.00 0.00 0.00 1.40
3555 4170 3.358111 TGCTCATCCGTTCCCAAATAA 57.642 42.857 0.00 0.00 0.00 1.40
3556 4171 3.358111 TTGCTCATCCGTTCCCAAATA 57.642 42.857 0.00 0.00 0.00 1.40
3557 4172 2.214376 TTGCTCATCCGTTCCCAAAT 57.786 45.000 0.00 0.00 0.00 2.32
3558 4173 1.988293 TTTGCTCATCCGTTCCCAAA 58.012 45.000 0.00 0.00 0.00 3.28
3559 4174 1.988293 TTTTGCTCATCCGTTCCCAA 58.012 45.000 0.00 0.00 0.00 4.12
3560 4175 1.988293 TTTTTGCTCATCCGTTCCCA 58.012 45.000 0.00 0.00 0.00 4.37
3577 4192 6.777580 TGAGGCTAAAGAGAAGACCAATTTTT 59.222 34.615 0.00 0.00 0.00 1.94
3578 4193 6.207614 GTGAGGCTAAAGAGAAGACCAATTTT 59.792 38.462 0.00 0.00 0.00 1.82
3579 4194 5.707764 GTGAGGCTAAAGAGAAGACCAATTT 59.292 40.000 0.00 0.00 0.00 1.82
3580 4195 5.249420 GTGAGGCTAAAGAGAAGACCAATT 58.751 41.667 0.00 0.00 0.00 2.32
3581 4196 4.621747 CGTGAGGCTAAAGAGAAGACCAAT 60.622 45.833 0.00 0.00 0.00 3.16
3582 4197 3.306088 CGTGAGGCTAAAGAGAAGACCAA 60.306 47.826 0.00 0.00 0.00 3.67
3583 4198 2.231478 CGTGAGGCTAAAGAGAAGACCA 59.769 50.000 0.00 0.00 0.00 4.02
3584 4199 2.492484 TCGTGAGGCTAAAGAGAAGACC 59.508 50.000 0.00 0.00 0.00 3.85
3585 4200 3.503891 GTCGTGAGGCTAAAGAGAAGAC 58.496 50.000 0.00 0.00 0.00 3.01
3586 4201 3.851976 GTCGTGAGGCTAAAGAGAAGA 57.148 47.619 0.00 0.00 0.00 2.87
3597 4212 3.184581 CAGTCAAACTTTAGTCGTGAGGC 59.815 47.826 0.00 0.00 0.00 4.70
3598 4213 4.369182 ACAGTCAAACTTTAGTCGTGAGG 58.631 43.478 0.00 0.00 0.00 3.86
3599 4214 5.276868 CCAACAGTCAAACTTTAGTCGTGAG 60.277 44.000 0.00 0.00 0.00 3.51
3600 4215 4.569162 CCAACAGTCAAACTTTAGTCGTGA 59.431 41.667 0.00 0.00 0.00 4.35
3601 4216 4.331717 ACCAACAGTCAAACTTTAGTCGTG 59.668 41.667 0.00 0.00 0.00 4.35
3602 4217 4.510571 ACCAACAGTCAAACTTTAGTCGT 58.489 39.130 0.00 0.00 0.00 4.34
3603 4218 5.079397 GACCAACAGTCAAACTTTAGTCG 57.921 43.478 0.00 0.00 45.55 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.