Multiple sequence alignment - TraesCS5A01G217800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G217800 chr5A 100.000 5825 0 0 1 5825 436076606 436082430 0.000000e+00 10757.0
1 TraesCS5A01G217800 chr5A 90.159 315 26 5 1 311 694553662 694553349 7.030000e-109 405.0
2 TraesCS5A01G217800 chr5A 91.275 298 23 3 1 295 461619511 461619808 2.530000e-108 403.0
3 TraesCS5A01G217800 chr5B 93.457 3454 126 32 1485 4881 391047480 391050890 0.000000e+00 5035.0
4 TraesCS5A01G217800 chr5B 94.502 964 49 4 391 1352 391046507 391047468 0.000000e+00 1483.0
5 TraesCS5A01G217800 chr5B 91.176 952 51 19 4887 5825 391050931 391051862 0.000000e+00 1262.0
6 TraesCS5A01G217800 chr5D 90.121 1731 97 38 4138 5825 334235405 334237104 0.000000e+00 2182.0
7 TraesCS5A01G217800 chr5D 94.163 1439 38 17 1485 2901 334232446 334233860 0.000000e+00 2150.0
8 TraesCS5A01G217800 chr5D 96.170 966 33 2 391 1352 334231469 334232434 0.000000e+00 1576.0
9 TraesCS5A01G217800 chr5D 95.879 461 11 2 3526 3978 334233856 334234316 0.000000e+00 739.0
10 TraesCS5A01G217800 chr5D 95.455 110 3 1 4039 4146 334234308 334234417 2.160000e-39 174.0
11 TraesCS5A01G217800 chr7D 87.864 412 42 3 947 1352 149748017 149747608 1.470000e-130 477.0
12 TraesCS5A01G217800 chr7D 76.497 885 135 33 2482 3318 149746681 149745822 1.170000e-111 414.0
13 TraesCS5A01G217800 chr7D 89.711 311 29 2 557 867 66831645 66831338 1.520000e-105 394.0
14 TraesCS5A01G217800 chr7D 80.000 545 64 18 395 937 430478865 430479366 1.540000e-95 361.0
15 TraesCS5A01G217800 chr7D 84.861 251 27 6 5425 5671 149744682 149744439 5.830000e-60 243.0
16 TraesCS5A01G217800 chr7D 86.266 233 21 5 1961 2190 149747135 149746911 5.830000e-60 243.0
17 TraesCS5A01G217800 chr7D 85.714 147 13 6 4696 4838 149745260 149745118 1.310000e-31 148.0
18 TraesCS5A01G217800 chr7D 82.635 167 27 2 774 939 509257662 509257827 4.700000e-31 147.0
19 TraesCS5A01G217800 chr7B 87.561 410 42 3 951 1352 112031282 112030874 3.180000e-127 466.0
20 TraesCS5A01G217800 chr7B 86.260 393 37 11 1598 1978 112030803 112030416 1.510000e-110 411.0
21 TraesCS5A01G217800 chr7B 80.000 545 64 20 395 937 447985046 447985547 1.540000e-95 361.0
22 TraesCS5A01G217800 chr7B 86.250 160 18 1 5482 5637 112023144 112022985 2.790000e-38 171.0
23 TraesCS5A01G217800 chr7B 86.577 149 12 7 4691 4836 112027774 112027631 2.170000e-34 158.0
24 TraesCS5A01G217800 chr7B 74.324 370 53 27 3128 3470 112028580 112028226 1.030000e-22 119.0
25 TraesCS5A01G217800 chr7A 81.774 620 54 18 1598 2190 150240691 150240104 1.140000e-126 464.0
26 TraesCS5A01G217800 chr7A 90.970 299 24 3 1 296 690772788 690772490 3.270000e-107 399.0
27 TraesCS5A01G217800 chr7A 90.940 298 24 3 1 295 95228337 95228634 1.180000e-106 398.0
28 TraesCS5A01G217800 chr7A 84.000 425 42 7 947 1352 150241328 150240911 9.160000e-103 385.0
29 TraesCS5A01G217800 chr7A 86.250 160 16 2 5482 5637 150237097 150236940 1.000000e-37 169.0
30 TraesCS5A01G217800 chr7A 85.106 141 15 6 4691 4828 150238164 150238027 7.870000e-29 139.0
31 TraesCS5A01G217800 chr7A 96.970 66 2 0 1425 1490 169024024 169024089 1.720000e-20 111.0
32 TraesCS5A01G217800 chr7A 94.118 68 4 0 1423 1490 183619701 183619634 2.870000e-18 104.0
33 TraesCS5A01G217800 chr7A 97.368 38 1 0 1350 1387 85122973 85122936 1.350000e-06 65.8
34 TraesCS5A01G217800 chr3D 85.116 430 51 9 514 940 146137186 146136767 1.500000e-115 427.0
35 TraesCS5A01G217800 chr3D 81.163 430 51 18 514 940 260559817 260559415 9.420000e-83 318.0
36 TraesCS5A01G217800 chr2A 91.262 309 22 5 1 304 744534158 744533850 3.250000e-112 416.0
37 TraesCS5A01G217800 chr2A 91.275 298 23 3 1 295 29431962 29432259 2.530000e-108 403.0
38 TraesCS5A01G217800 chr2A 90.940 298 24 3 1 295 768980136 768980433 1.180000e-106 398.0
39 TraesCS5A01G217800 chr2A 88.272 162 15 4 782 940 707004402 707004242 2.140000e-44 191.0
40 TraesCS5A01G217800 chr3A 91.611 298 22 3 1 295 666226965 666227262 5.430000e-110 409.0
41 TraesCS5A01G217800 chr3A 84.393 173 21 5 772 940 9129635 9129465 1.300000e-36 165.0
42 TraesCS5A01G217800 chr3A 84.568 162 23 2 781 940 726412587 726412426 6.040000e-35 159.0
43 TraesCS5A01G217800 chr3A 95.588 68 2 1 1420 1487 550509432 550509498 2.220000e-19 108.0
44 TraesCS5A01G217800 chr3A 94.737 38 2 0 1350 1387 571356097 571356134 6.300000e-05 60.2
45 TraesCS5A01G217800 chr6A 91.304 299 22 3 1 295 602741664 602741366 7.030000e-109 405.0
46 TraesCS5A01G217800 chr3B 81.818 176 29 3 765 938 730167780 730167954 1.690000e-30 145.0
47 TraesCS5A01G217800 chr3B 92.500 40 3 0 1348 1387 26759512 26759551 2.270000e-04 58.4
48 TraesCS5A01G217800 chr1D 94.737 76 3 1 1420 1495 228026158 228026084 3.690000e-22 117.0
49 TraesCS5A01G217800 chr6D 95.588 68 3 0 1420 1487 472988219 472988286 6.170000e-20 110.0
50 TraesCS5A01G217800 chr2D 95.588 68 3 0 1420 1487 204631494 204631561 6.170000e-20 110.0
51 TraesCS5A01G217800 chr6B 92.308 78 3 3 1421 1496 321325525 321325449 2.220000e-19 108.0
52 TraesCS5A01G217800 chr4B 95.588 68 2 1 1421 1488 173298975 173299041 2.220000e-19 108.0
53 TraesCS5A01G217800 chr2B 88.889 90 5 5 1421 1509 224587401 224587486 7.980000e-19 106.0
54 TraesCS5A01G217800 chr4A 94.737 38 2 0 1350 1387 22490078 22490041 6.300000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G217800 chr5A 436076606 436082430 5824 False 10757.000000 10757 100.0000 1 5825 1 chr5A.!!$F1 5824
1 TraesCS5A01G217800 chr5B 391046507 391051862 5355 False 2593.333333 5035 93.0450 391 5825 3 chr5B.!!$F1 5434
2 TraesCS5A01G217800 chr5D 334231469 334237104 5635 False 1364.200000 2182 94.3576 391 5825 5 chr5D.!!$F1 5434
3 TraesCS5A01G217800 chr7D 430478865 430479366 501 False 361.000000 361 80.0000 395 937 1 chr7D.!!$F1 542
4 TraesCS5A01G217800 chr7D 149744439 149748017 3578 True 305.000000 477 84.2404 947 5671 5 chr7D.!!$R2 4724
5 TraesCS5A01G217800 chr7B 447985046 447985547 501 False 361.000000 361 80.0000 395 937 1 chr7B.!!$F1 542
6 TraesCS5A01G217800 chr7B 112027631 112031282 3651 True 288.500000 466 83.6805 951 4836 4 chr7B.!!$R2 3885
7 TraesCS5A01G217800 chr7A 150236940 150241328 4388 True 289.250000 464 84.2825 947 5637 4 chr7A.!!$R4 4690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 272 0.100503 CAATTTTAGGCGCTTCCGGG 59.899 55.000 7.64 0.0 40.77 5.73 F
1368 1399 0.033601 TTGTTTGGGTGCTCTGTGGT 60.034 50.000 0.00 0.0 0.00 4.16 F
1434 1465 0.033366 GTGGGTTCATGTTTGGGTGC 59.967 55.000 0.00 0.0 0.00 5.01 F
1435 1466 0.105760 TGGGTTCATGTTTGGGTGCT 60.106 50.000 0.00 0.0 0.00 4.40 F
1441 1472 0.599558 CATGTTTGGGTGCTCTGTGG 59.400 55.000 0.00 0.0 0.00 4.17 F
1442 1473 1.181098 ATGTTTGGGTGCTCTGTGGC 61.181 55.000 0.00 0.0 0.00 5.01 F
1453 1484 1.234821 CTCTGTGGCGGTTTGCTTTA 58.765 50.000 0.00 0.0 45.43 1.85 F
1454 1485 1.812571 CTCTGTGGCGGTTTGCTTTAT 59.187 47.619 0.00 0.0 45.43 1.40 F
1689 1827 2.158740 TGCAGTACAAGGTTGGTTGCTA 60.159 45.455 13.10 0.0 35.43 3.49 F
3815 5164 2.158784 AGGTAGCCGACTAGTAGGTGAG 60.159 54.545 21.45 0.0 0.00 3.51 F
4437 6791 0.032540 GCTTTGCCAGTTGTTGAGGG 59.967 55.000 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1415 1446 0.033366 GCACCCAAACATGAACCCAC 59.967 55.000 0.00 0.00 0.00 4.61 R
3181 4186 0.392595 CTTGAGCAGGCATGAGCAGA 60.393 55.000 0.62 0.00 44.61 4.26 R
3184 4189 0.663688 CATCTTGAGCAGGCATGAGC 59.336 55.000 0.62 0.00 41.10 4.26 R
3221 4246 0.836606 TGTCTGACAAGTGGCTGGAA 59.163 50.000 8.27 0.00 0.00 3.53 R
3312 4339 5.126707 ACAATGAATTTCTCCAATCAGAGGC 59.873 40.000 0.00 0.00 34.46 4.70 R
3409 4700 7.696992 AGCCGAAACAGGATAAAGATTTTAA 57.303 32.000 0.00 0.00 0.00 1.52 R
3497 4826 5.424121 AGTATTTGCGAGTCATAAATGCC 57.576 39.130 10.34 3.65 30.06 4.40 R
3627 4967 2.441410 TGAATGCGGTGGATTTTAGCA 58.559 42.857 0.00 0.00 42.28 3.49 R
3852 5208 3.695830 CCTAAAGGTGTTAGGCACTCA 57.304 47.619 0.00 0.00 46.86 3.41 R
4767 7124 0.733150 GGCTGTCCGCAAAATACTCC 59.267 55.000 0.00 0.00 41.67 3.85 R
5773 8508 2.294074 GGGCGTGACCAGCATATAAAA 58.706 47.619 0.00 0.00 42.05 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.650143 TCAGCCAATTTTTCCTTTAGATTAGT 57.350 30.769 0.00 0.00 0.00 2.24
26 27 9.088987 TCAGCCAATTTTTCCTTTAGATTAGTT 57.911 29.630 0.00 0.00 0.00 2.24
27 28 9.710900 CAGCCAATTTTTCCTTTAGATTAGTTT 57.289 29.630 0.00 0.00 0.00 2.66
58 59 5.743467 TGTGCTATGTAATAAAAATCCGCG 58.257 37.500 0.00 0.00 0.00 6.46
59 60 5.524281 TGTGCTATGTAATAAAAATCCGCGA 59.476 36.000 8.23 0.00 0.00 5.87
60 61 6.037281 TGTGCTATGTAATAAAAATCCGCGAA 59.963 34.615 8.23 0.00 0.00 4.70
61 62 6.356190 GTGCTATGTAATAAAAATCCGCGAAC 59.644 38.462 8.23 0.00 0.00 3.95
62 63 6.259167 TGCTATGTAATAAAAATCCGCGAACT 59.741 34.615 8.23 0.00 0.00 3.01
63 64 7.130269 GCTATGTAATAAAAATCCGCGAACTT 58.870 34.615 8.23 0.00 0.00 2.66
64 65 7.320560 GCTATGTAATAAAAATCCGCGAACTTC 59.679 37.037 8.23 0.00 0.00 3.01
65 66 5.552807 TGTAATAAAAATCCGCGAACTTCG 58.447 37.500 8.23 6.82 43.89 3.79
75 76 3.274196 CGAACTTCGCCGAAATGTG 57.726 52.632 0.00 0.00 31.14 3.21
76 77 0.789383 CGAACTTCGCCGAAATGTGC 60.789 55.000 0.00 0.00 31.14 4.57
77 78 0.454452 GAACTTCGCCGAAATGTGCC 60.454 55.000 0.00 0.00 0.00 5.01
78 79 2.098298 CTTCGCCGAAATGTGCCG 59.902 61.111 0.00 0.00 0.00 5.69
79 80 2.357638 TTCGCCGAAATGTGCCGA 60.358 55.556 0.00 0.00 0.00 5.54
80 81 1.906994 CTTCGCCGAAATGTGCCGAA 61.907 55.000 0.00 0.00 0.00 4.30
81 82 1.507974 TTCGCCGAAATGTGCCGAAA 61.508 50.000 0.00 0.00 0.00 3.46
82 83 1.136565 CGCCGAAATGTGCCGAAAT 59.863 52.632 0.00 0.00 0.00 2.17
83 84 0.455972 CGCCGAAATGTGCCGAAATT 60.456 50.000 0.00 0.00 0.00 1.82
84 85 1.708822 GCCGAAATGTGCCGAAATTT 58.291 45.000 0.00 0.00 0.00 1.82
85 86 2.729467 CGCCGAAATGTGCCGAAATTTA 60.729 45.455 0.00 0.00 0.00 1.40
86 87 3.443976 GCCGAAATGTGCCGAAATTTAT 58.556 40.909 0.00 0.00 0.00 1.40
87 88 3.485743 GCCGAAATGTGCCGAAATTTATC 59.514 43.478 0.00 0.00 0.00 1.75
88 89 3.723764 CCGAAATGTGCCGAAATTTATCG 59.276 43.478 0.00 0.00 42.37 2.92
89 90 4.339429 CGAAATGTGCCGAAATTTATCGT 58.661 39.130 0.00 0.00 41.16 3.73
90 91 4.202158 CGAAATGTGCCGAAATTTATCGTG 59.798 41.667 0.00 0.00 41.16 4.35
91 92 4.695217 AATGTGCCGAAATTTATCGTGT 57.305 36.364 0.00 0.00 41.16 4.49
92 93 4.695217 ATGTGCCGAAATTTATCGTGTT 57.305 36.364 0.00 0.00 41.16 3.32
93 94 4.491234 TGTGCCGAAATTTATCGTGTTT 57.509 36.364 0.00 0.00 41.16 2.83
94 95 5.608676 TGTGCCGAAATTTATCGTGTTTA 57.391 34.783 0.00 0.00 41.16 2.01
95 96 5.623335 TGTGCCGAAATTTATCGTGTTTAG 58.377 37.500 0.00 0.00 41.16 1.85
96 97 4.494410 GTGCCGAAATTTATCGTGTTTAGC 59.506 41.667 0.00 0.00 41.16 3.09
97 98 4.033019 GCCGAAATTTATCGTGTTTAGCC 58.967 43.478 0.00 0.00 41.16 3.93
98 99 4.268522 CCGAAATTTATCGTGTTTAGCCG 58.731 43.478 0.00 0.00 41.16 5.52
99 100 4.033129 CCGAAATTTATCGTGTTTAGCCGA 59.967 41.667 0.00 0.00 41.16 5.54
100 101 5.446206 CCGAAATTTATCGTGTTTAGCCGAA 60.446 40.000 0.00 0.00 41.16 4.30
101 102 6.016718 CGAAATTTATCGTGTTTAGCCGAAA 58.983 36.000 0.00 0.00 38.01 3.46
102 103 6.685403 CGAAATTTATCGTGTTTAGCCGAAAT 59.315 34.615 0.00 0.00 38.01 2.17
103 104 7.217447 CGAAATTTATCGTGTTTAGCCGAAATT 59.783 33.333 0.00 0.00 38.01 1.82
104 105 8.751302 AAATTTATCGTGTTTAGCCGAAATTT 57.249 26.923 0.00 0.00 36.57 1.82
105 106 9.843334 AAATTTATCGTGTTTAGCCGAAATTTA 57.157 25.926 0.00 0.00 36.57 1.40
107 108 9.659830 ATTTATCGTGTTTAGCCGAAATTTATC 57.340 29.630 0.00 0.00 36.57 1.75
108 109 6.671614 ATCGTGTTTAGCCGAAATTTATCA 57.328 33.333 0.00 0.00 36.57 2.15
109 110 6.671614 TCGTGTTTAGCCGAAATTTATCAT 57.328 33.333 0.00 0.00 0.00 2.45
110 111 6.482835 TCGTGTTTAGCCGAAATTTATCATG 58.517 36.000 0.00 0.00 0.00 3.07
111 112 6.092944 TCGTGTTTAGCCGAAATTTATCATGT 59.907 34.615 0.00 0.00 0.00 3.21
112 113 6.745450 CGTGTTTAGCCGAAATTTATCATGTT 59.255 34.615 0.00 0.00 0.00 2.71
113 114 7.272515 CGTGTTTAGCCGAAATTTATCATGTTT 59.727 33.333 0.00 0.00 0.00 2.83
114 115 8.372521 GTGTTTAGCCGAAATTTATCATGTTTG 58.627 33.333 0.00 0.00 0.00 2.93
115 116 7.543868 TGTTTAGCCGAAATTTATCATGTTTGG 59.456 33.333 0.00 0.00 0.00 3.28
116 117 4.432712 AGCCGAAATTTATCATGTTTGGC 58.567 39.130 12.68 12.68 39.02 4.52
117 118 3.555547 GCCGAAATTTATCATGTTTGGCC 59.444 43.478 10.35 0.00 32.75 5.36
118 119 4.753233 CCGAAATTTATCATGTTTGGCCA 58.247 39.130 0.00 0.00 0.00 5.36
119 120 5.174395 CCGAAATTTATCATGTTTGGCCAA 58.826 37.500 16.05 16.05 0.00 4.52
120 121 5.641209 CCGAAATTTATCATGTTTGGCCAAA 59.359 36.000 27.13 27.13 0.00 3.28
121 122 6.315891 CCGAAATTTATCATGTTTGGCCAAAT 59.684 34.615 32.52 19.11 32.36 2.32
122 123 7.148272 CCGAAATTTATCATGTTTGGCCAAATT 60.148 33.333 32.52 20.51 32.36 1.82
123 124 8.235905 CGAAATTTATCATGTTTGGCCAAATTT 58.764 29.630 32.52 23.47 37.02 1.82
124 125 9.911138 GAAATTTATCATGTTTGGCCAAATTTT 57.089 25.926 32.52 17.73 35.42 1.82
128 129 6.907206 ATCATGTTTGGCCAAATTTTATCG 57.093 33.333 32.52 16.75 32.36 2.92
129 130 5.788450 TCATGTTTGGCCAAATTTTATCGT 58.212 33.333 32.52 17.25 32.36 3.73
130 131 5.636965 TCATGTTTGGCCAAATTTTATCGTG 59.363 36.000 32.52 26.14 32.36 4.35
131 132 4.950050 TGTTTGGCCAAATTTTATCGTGT 58.050 34.783 32.52 0.00 32.36 4.49
132 133 5.360591 TGTTTGGCCAAATTTTATCGTGTT 58.639 33.333 32.52 0.00 32.36 3.32
133 134 5.817816 TGTTTGGCCAAATTTTATCGTGTTT 59.182 32.000 32.52 0.00 32.36 2.83
134 135 6.984474 TGTTTGGCCAAATTTTATCGTGTTTA 59.016 30.769 32.52 2.47 32.36 2.01
135 136 7.494625 TGTTTGGCCAAATTTTATCGTGTTTAA 59.505 29.630 32.52 2.04 32.36 1.52
136 137 7.644986 TTGGCCAAATTTTATCGTGTTTAAG 57.355 32.000 17.98 0.00 0.00 1.85
137 138 5.635700 TGGCCAAATTTTATCGTGTTTAAGC 59.364 36.000 0.61 0.00 0.00 3.09
138 139 5.062934 GGCCAAATTTTATCGTGTTTAAGCC 59.937 40.000 0.00 0.00 0.00 4.35
139 140 5.635700 GCCAAATTTTATCGTGTTTAAGCCA 59.364 36.000 0.00 0.00 0.00 4.75
140 141 6.146347 GCCAAATTTTATCGTGTTTAAGCCAA 59.854 34.615 0.00 0.00 0.00 4.52
141 142 7.307455 GCCAAATTTTATCGTGTTTAAGCCAAA 60.307 33.333 0.00 0.00 0.00 3.28
142 143 8.007152 CCAAATTTTATCGTGTTTAAGCCAAAC 58.993 33.333 4.90 4.90 45.72 2.93
143 144 8.760569 CAAATTTTATCGTGTTTAAGCCAAACT 58.239 29.630 11.54 0.00 45.72 2.66
144 145 8.880878 AATTTTATCGTGTTTAAGCCAAACTT 57.119 26.923 11.54 0.00 45.72 2.66
145 146 7.917720 TTTTATCGTGTTTAAGCCAAACTTC 57.082 32.000 11.54 5.61 45.72 3.01
146 147 3.595709 TCGTGTTTAAGCCAAACTTCG 57.404 42.857 11.54 14.02 45.72 3.79
147 148 2.041244 CGTGTTTAAGCCAAACTTCGC 58.959 47.619 11.54 0.00 45.72 4.70
148 149 2.390938 GTGTTTAAGCCAAACTTCGCC 58.609 47.619 11.54 0.00 45.72 5.54
149 150 1.002251 TGTTTAAGCCAAACTTCGCCG 60.002 47.619 11.54 0.00 45.72 6.46
150 151 1.264826 GTTTAAGCCAAACTTCGCCGA 59.735 47.619 4.66 0.00 42.79 5.54
151 152 1.595466 TTAAGCCAAACTTCGCCGAA 58.405 45.000 0.00 0.00 39.97 4.30
152 153 0.869730 TAAGCCAAACTTCGCCGAAC 59.130 50.000 0.00 0.00 39.97 3.95
153 154 0.818040 AAGCCAAACTTCGCCGAACT 60.818 50.000 0.00 0.00 30.77 3.01
154 155 0.818040 AGCCAAACTTCGCCGAACTT 60.818 50.000 0.00 0.00 0.00 2.66
155 156 0.385598 GCCAAACTTCGCCGAACTTC 60.386 55.000 0.00 0.00 0.00 3.01
156 157 1.226746 CCAAACTTCGCCGAACTTCT 58.773 50.000 0.00 0.00 0.00 2.85
157 158 1.602377 CCAAACTTCGCCGAACTTCTT 59.398 47.619 0.00 0.00 0.00 2.52
158 159 2.032924 CCAAACTTCGCCGAACTTCTTT 59.967 45.455 0.00 0.00 0.00 2.52
159 160 3.488553 CCAAACTTCGCCGAACTTCTTTT 60.489 43.478 0.00 0.00 0.00 2.27
160 161 4.260866 CCAAACTTCGCCGAACTTCTTTTA 60.261 41.667 0.00 0.00 0.00 1.52
161 162 5.449304 CAAACTTCGCCGAACTTCTTTTAT 58.551 37.500 0.00 0.00 0.00 1.40
162 163 5.684550 AACTTCGCCGAACTTCTTTTATT 57.315 34.783 0.00 0.00 0.00 1.40
163 164 5.684550 ACTTCGCCGAACTTCTTTTATTT 57.315 34.783 0.00 0.00 0.00 1.40
164 165 6.068473 ACTTCGCCGAACTTCTTTTATTTT 57.932 33.333 0.00 0.00 0.00 1.82
165 166 7.193377 ACTTCGCCGAACTTCTTTTATTTTA 57.807 32.000 0.00 0.00 0.00 1.52
166 167 7.641760 ACTTCGCCGAACTTCTTTTATTTTAA 58.358 30.769 0.00 0.00 0.00 1.52
167 168 8.130469 ACTTCGCCGAACTTCTTTTATTTTAAA 58.870 29.630 0.00 0.00 0.00 1.52
168 169 8.853469 TTCGCCGAACTTCTTTTATTTTAAAA 57.147 26.923 2.51 2.51 0.00 1.52
169 170 9.465985 TTCGCCGAACTTCTTTTATTTTAAAAT 57.534 25.926 17.18 17.18 0.00 1.82
180 181 9.816354 TCTTTTATTTTAAAATATGCCTGGAGC 57.184 29.630 18.87 0.00 44.14 4.70
191 192 4.785453 CTGGAGCGGCCTTGGGAC 62.785 72.222 0.00 0.00 37.63 4.46
194 195 4.785453 GAGCGGCCTTGGGACCTG 62.785 72.222 0.00 0.00 0.00 4.00
199 200 4.357279 GCCTTGGGACCTGCAGCT 62.357 66.667 8.66 0.00 0.00 4.24
200 201 2.360852 CCTTGGGACCTGCAGCTG 60.361 66.667 10.11 10.11 0.00 4.24
201 202 2.360852 CTTGGGACCTGCAGCTGG 60.361 66.667 17.12 16.57 0.00 4.85
202 203 3.933048 CTTGGGACCTGCAGCTGGG 62.933 68.421 21.55 11.79 0.00 4.45
205 206 4.416738 GGACCTGCAGCTGGGGAC 62.417 72.222 21.55 12.20 0.00 4.46
219 220 2.663196 GGACCAACTCGTCCCCAG 59.337 66.667 0.00 0.00 45.72 4.45
220 221 2.663196 GACCAACTCGTCCCCAGG 59.337 66.667 0.00 0.00 0.00 4.45
221 222 2.122547 ACCAACTCGTCCCCAGGT 60.123 61.111 0.00 0.00 0.00 4.00
222 223 2.168666 GACCAACTCGTCCCCAGGTC 62.169 65.000 0.00 0.00 38.77 3.85
223 224 2.663196 CAACTCGTCCCCAGGTCC 59.337 66.667 0.00 0.00 0.00 4.46
224 225 2.203182 AACTCGTCCCCAGGTCCA 59.797 61.111 0.00 0.00 0.00 4.02
225 226 1.460689 AACTCGTCCCCAGGTCCAA 60.461 57.895 0.00 0.00 0.00 3.53
226 227 0.840722 AACTCGTCCCCAGGTCCAAT 60.841 55.000 0.00 0.00 0.00 3.16
227 228 0.840722 ACTCGTCCCCAGGTCCAATT 60.841 55.000 0.00 0.00 0.00 2.32
228 229 0.328258 CTCGTCCCCAGGTCCAATTT 59.672 55.000 0.00 0.00 0.00 1.82
229 230 0.774908 TCGTCCCCAGGTCCAATTTT 59.225 50.000 0.00 0.00 0.00 1.82
230 231 1.146152 TCGTCCCCAGGTCCAATTTTT 59.854 47.619 0.00 0.00 0.00 1.94
231 232 2.375845 TCGTCCCCAGGTCCAATTTTTA 59.624 45.455 0.00 0.00 0.00 1.52
232 233 2.490509 CGTCCCCAGGTCCAATTTTTAC 59.509 50.000 0.00 0.00 0.00 2.01
233 234 2.490509 GTCCCCAGGTCCAATTTTTACG 59.509 50.000 0.00 0.00 0.00 3.18
234 235 1.203758 CCCCAGGTCCAATTTTTACGC 59.796 52.381 0.00 0.00 0.00 4.42
235 236 1.203758 CCCAGGTCCAATTTTTACGCC 59.796 52.381 0.00 0.00 0.00 5.68
236 237 1.135517 CCAGGTCCAATTTTTACGCCG 60.136 52.381 0.00 0.00 0.00 6.46
237 238 1.135517 CAGGTCCAATTTTTACGCCGG 60.136 52.381 0.00 0.00 0.00 6.13
238 239 0.457166 GGTCCAATTTTTACGCCGGC 60.457 55.000 19.07 19.07 0.00 6.13
239 240 0.524414 GTCCAATTTTTACGCCGGCT 59.476 50.000 26.68 14.27 0.00 5.52
240 241 0.806241 TCCAATTTTTACGCCGGCTC 59.194 50.000 26.68 0.00 0.00 4.70
241 242 0.523966 CCAATTTTTACGCCGGCTCA 59.476 50.000 26.68 9.08 0.00 4.26
242 243 1.613270 CAATTTTTACGCCGGCTCAC 58.387 50.000 26.68 0.00 0.00 3.51
243 244 0.524414 AATTTTTACGCCGGCTCACC 59.476 50.000 26.68 0.00 0.00 4.02
244 245 1.310216 ATTTTTACGCCGGCTCACCC 61.310 55.000 26.68 0.00 0.00 4.61
245 246 3.905437 TTTTACGCCGGCTCACCCC 62.905 63.158 26.68 0.00 0.00 4.95
247 248 3.961225 TTACGCCGGCTCACCCCTA 62.961 63.158 26.68 0.00 0.00 3.53
251 252 3.854669 CCGGCTCACCCCTAGCTG 61.855 72.222 0.00 0.00 44.43 4.24
252 253 4.537433 CGGCTCACCCCTAGCTGC 62.537 72.222 0.00 0.00 39.36 5.25
253 254 3.402681 GGCTCACCCCTAGCTGCA 61.403 66.667 1.02 0.00 39.97 4.41
254 255 2.671070 GCTCACCCCTAGCTGCAA 59.329 61.111 1.02 0.00 37.01 4.08
255 256 1.225704 GCTCACCCCTAGCTGCAAT 59.774 57.895 1.02 0.00 37.01 3.56
256 257 0.394899 GCTCACCCCTAGCTGCAATT 60.395 55.000 1.02 0.00 37.01 2.32
257 258 1.957113 GCTCACCCCTAGCTGCAATTT 60.957 52.381 1.02 0.00 37.01 1.82
258 259 2.450476 CTCACCCCTAGCTGCAATTTT 58.550 47.619 1.02 0.00 0.00 1.82
259 260 3.620488 CTCACCCCTAGCTGCAATTTTA 58.380 45.455 1.02 0.00 0.00 1.52
260 261 3.620488 TCACCCCTAGCTGCAATTTTAG 58.380 45.455 1.02 0.00 0.00 1.85
261 262 2.689983 CACCCCTAGCTGCAATTTTAGG 59.310 50.000 1.02 3.62 33.89 2.69
262 263 1.683385 CCCCTAGCTGCAATTTTAGGC 59.317 52.381 1.02 0.00 32.97 3.93
263 264 1.334869 CCCTAGCTGCAATTTTAGGCG 59.665 52.381 1.02 0.00 32.97 5.52
264 265 1.268743 CCTAGCTGCAATTTTAGGCGC 60.269 52.381 0.00 0.00 0.00 6.53
265 266 1.672881 CTAGCTGCAATTTTAGGCGCT 59.327 47.619 7.64 0.00 40.77 5.92
266 267 0.890683 AGCTGCAATTTTAGGCGCTT 59.109 45.000 7.64 0.52 36.84 4.68
267 268 1.135286 AGCTGCAATTTTAGGCGCTTC 60.135 47.619 7.64 0.00 36.84 3.86
268 269 1.913317 CTGCAATTTTAGGCGCTTCC 58.087 50.000 7.64 0.00 0.00 3.46
269 270 0.170116 TGCAATTTTAGGCGCTTCCG 59.830 50.000 7.64 0.00 40.77 4.30
270 271 0.525455 GCAATTTTAGGCGCTTCCGG 60.525 55.000 7.64 0.00 40.77 5.14
271 272 0.100503 CAATTTTAGGCGCTTCCGGG 59.899 55.000 7.64 0.00 40.77 5.73
272 273 1.035385 AATTTTAGGCGCTTCCGGGG 61.035 55.000 7.64 0.00 40.77 5.73
273 274 2.904178 ATTTTAGGCGCTTCCGGGGG 62.904 60.000 7.64 0.00 40.77 5.40
297 298 3.474570 GGCTGGAGATGCCCTCGT 61.475 66.667 0.00 0.00 44.32 4.18
298 299 2.586792 GCTGGAGATGCCCTCGTT 59.413 61.111 0.00 0.00 42.89 3.85
299 300 1.522580 GCTGGAGATGCCCTCGTTC 60.523 63.158 0.00 0.00 42.89 3.95
300 301 1.144936 CTGGAGATGCCCTCGTTCC 59.855 63.158 0.00 0.00 42.89 3.62
301 302 1.306141 TGGAGATGCCCTCGTTCCT 60.306 57.895 0.00 0.00 42.89 3.36
302 303 1.144936 GGAGATGCCCTCGTTCCTG 59.855 63.158 0.00 0.00 42.89 3.86
303 304 1.522580 GAGATGCCCTCGTTCCTGC 60.523 63.158 0.00 0.00 31.32 4.85
304 305 2.244117 GAGATGCCCTCGTTCCTGCA 62.244 60.000 0.00 0.00 38.23 4.41
305 306 1.153086 GATGCCCTCGTTCCTGCAT 60.153 57.895 0.00 0.00 46.44 3.96
306 307 0.106708 GATGCCCTCGTTCCTGCATA 59.893 55.000 0.00 0.00 43.99 3.14
307 308 0.107456 ATGCCCTCGTTCCTGCATAG 59.893 55.000 0.00 0.00 42.30 2.23
308 309 1.227674 GCCCTCGTTCCTGCATAGG 60.228 63.158 0.00 0.00 46.06 2.57
309 310 1.227674 CCCTCGTTCCTGCATAGGC 60.228 63.158 0.00 0.00 44.22 3.93
310 311 1.227674 CCTCGTTCCTGCATAGGCC 60.228 63.158 0.00 0.00 44.22 5.19
311 312 1.592669 CTCGTTCCTGCATAGGCCG 60.593 63.158 0.00 0.00 44.22 6.13
312 313 2.016393 CTCGTTCCTGCATAGGCCGA 62.016 60.000 0.00 0.00 44.22 5.54
313 314 1.592669 CGTTCCTGCATAGGCCGAG 60.593 63.158 0.00 0.00 44.22 4.63
314 315 1.823295 GTTCCTGCATAGGCCGAGA 59.177 57.895 0.00 0.00 44.22 4.04
315 316 0.178068 GTTCCTGCATAGGCCGAGAA 59.822 55.000 0.00 0.00 44.22 2.87
316 317 0.908910 TTCCTGCATAGGCCGAGAAA 59.091 50.000 0.00 0.00 44.22 2.52
317 318 0.908910 TCCTGCATAGGCCGAGAAAA 59.091 50.000 0.00 0.00 44.22 2.29
318 319 1.280710 TCCTGCATAGGCCGAGAAAAA 59.719 47.619 0.00 0.00 44.22 1.94
334 335 0.875059 AAAAACTCACCGCAGCTAGC 59.125 50.000 6.62 6.62 40.87 3.42
335 336 0.955919 AAAACTCACCGCAGCTAGCC 60.956 55.000 12.13 0.00 41.38 3.93
336 337 2.804828 AAACTCACCGCAGCTAGCCC 62.805 60.000 12.13 1.56 41.38 5.19
337 338 4.537433 CTCACCGCAGCTAGCCCC 62.537 72.222 12.13 1.15 41.38 5.80
339 340 3.154473 CACCGCAGCTAGCCCCTA 61.154 66.667 12.13 0.00 41.38 3.53
340 341 3.155167 ACCGCAGCTAGCCCCTAC 61.155 66.667 12.13 0.00 41.38 3.18
341 342 3.930012 CCGCAGCTAGCCCCTACC 61.930 72.222 12.13 0.00 41.38 3.18
342 343 4.286320 CGCAGCTAGCCCCTACCG 62.286 72.222 12.13 1.56 41.38 4.02
343 344 4.610714 GCAGCTAGCCCCTACCGC 62.611 72.222 12.13 0.00 37.23 5.68
344 345 3.930012 CAGCTAGCCCCTACCGCC 61.930 72.222 12.13 0.00 0.00 6.13
347 348 3.296054 CTAGCCCCTACCGCCGAG 61.296 72.222 0.00 0.00 0.00 4.63
348 349 3.786884 CTAGCCCCTACCGCCGAGA 62.787 68.421 0.00 0.00 0.00 4.04
351 352 3.834799 CCCCTACCGCCGAGACAC 61.835 72.222 0.00 0.00 0.00 3.67
352 353 3.066190 CCCTACCGCCGAGACACA 61.066 66.667 0.00 0.00 0.00 3.72
353 354 2.423898 CCCTACCGCCGAGACACAT 61.424 63.158 0.00 0.00 0.00 3.21
354 355 1.065928 CCTACCGCCGAGACACATC 59.934 63.158 0.00 0.00 0.00 3.06
355 356 1.298413 CTACCGCCGAGACACATCG 60.298 63.158 0.00 0.00 42.36 3.84
356 357 1.712018 CTACCGCCGAGACACATCGA 61.712 60.000 0.00 0.00 45.56 3.59
357 358 1.712018 TACCGCCGAGACACATCGAG 61.712 60.000 0.00 0.00 45.56 4.04
358 359 2.951745 CGCCGAGACACATCGAGC 60.952 66.667 0.00 0.00 45.56 5.03
359 360 2.583593 GCCGAGACACATCGAGCC 60.584 66.667 0.00 0.00 45.56 4.70
360 361 2.885113 CCGAGACACATCGAGCCA 59.115 61.111 0.00 0.00 45.56 4.75
361 362 1.226802 CCGAGACACATCGAGCCAG 60.227 63.158 0.00 0.00 45.56 4.85
362 363 1.875813 CGAGACACATCGAGCCAGC 60.876 63.158 0.00 0.00 45.56 4.85
363 364 1.520342 GAGACACATCGAGCCAGCC 60.520 63.158 0.00 0.00 0.00 4.85
364 365 2.887568 GACACATCGAGCCAGCCG 60.888 66.667 0.00 0.00 0.00 5.52
379 380 4.918201 CCGCTCGCTTCCCATCCC 62.918 72.222 0.00 0.00 0.00 3.85
381 382 3.849951 GCTCGCTTCCCATCCCGA 61.850 66.667 0.00 0.00 0.00 5.14
382 383 2.107141 CTCGCTTCCCATCCCGAC 59.893 66.667 0.00 0.00 0.00 4.79
383 384 3.447025 CTCGCTTCCCATCCCGACC 62.447 68.421 0.00 0.00 0.00 4.79
384 385 3.470888 CGCTTCCCATCCCGACCT 61.471 66.667 0.00 0.00 0.00 3.85
385 386 2.506472 GCTTCCCATCCCGACCTC 59.494 66.667 0.00 0.00 0.00 3.85
386 387 3.108288 GCTTCCCATCCCGACCTCC 62.108 68.421 0.00 0.00 0.00 4.30
387 388 2.366435 TTCCCATCCCGACCTCCC 60.366 66.667 0.00 0.00 0.00 4.30
388 389 4.853142 TCCCATCCCGACCTCCCG 62.853 72.222 0.00 0.00 0.00 5.14
393 394 3.735251 ATCCCGACCTCCCGTCTCC 62.735 68.421 0.00 0.00 39.56 3.71
594 601 1.838112 CAAGCCAGCAACCATCCTTA 58.162 50.000 0.00 0.00 0.00 2.69
647 654 1.381056 CCATTCGGCCATTCCCCAA 60.381 57.895 2.24 0.00 0.00 4.12
702 710 3.264964 ACCCACCATCCAGTACGTAATTT 59.735 43.478 0.00 0.00 0.00 1.82
721 729 8.839914 CGTAATTTGTGTTCAGTTATGTCATTG 58.160 33.333 0.00 0.00 0.00 2.82
779 787 6.496338 AGAACGTTTATAAGCCTTCTTTGG 57.504 37.500 0.46 0.00 33.85 3.28
795 803 3.627577 TCTTTGGTGCAAAACTGAGACTC 59.372 43.478 0.00 0.00 32.75 3.36
932 942 7.032598 TCCCCTGTTTTCAAATTCTAGATCT 57.967 36.000 0.00 0.00 0.00 2.75
949 959 1.373497 CTGCCACTGTCGTCACTCC 60.373 63.158 0.00 0.00 0.00 3.85
953 963 0.962489 CCACTGTCGTCACTCCTCTT 59.038 55.000 0.00 0.00 0.00 2.85
1147 1175 4.935495 CCATGGTATGCCGCCGCT 62.935 66.667 2.57 0.00 37.67 5.52
1201 1230 1.885850 GTGTTTGACTCGGTGGCGT 60.886 57.895 0.00 0.00 0.00 5.68
1279 1308 2.025155 CTGACCTACGCCTGTGAGTAT 58.975 52.381 0.00 0.00 0.00 2.12
1335 1366 6.331061 ACTTCATGTCTGAATCGGTAGTTAC 58.669 40.000 0.00 0.00 40.52 2.50
1352 1383 0.834687 TACGCTGAGACCCCCTTTGT 60.835 55.000 0.00 0.00 0.00 2.83
1354 1385 0.537371 CGCTGAGACCCCCTTTGTTT 60.537 55.000 0.00 0.00 0.00 2.83
1355 1386 0.961753 GCTGAGACCCCCTTTGTTTG 59.038 55.000 0.00 0.00 0.00 2.93
1356 1387 1.620822 CTGAGACCCCCTTTGTTTGG 58.379 55.000 0.00 0.00 0.00 3.28
1357 1388 0.187361 TGAGACCCCCTTTGTTTGGG 59.813 55.000 0.00 0.00 45.34 4.12
1360 1391 3.147132 CCCCCTTTGTTTGGGTGC 58.853 61.111 0.00 0.00 43.09 5.01
1361 1392 1.459348 CCCCCTTTGTTTGGGTGCT 60.459 57.895 0.00 0.00 43.09 4.40
1362 1393 1.471829 CCCCCTTTGTTTGGGTGCTC 61.472 60.000 0.00 0.00 43.09 4.26
1363 1394 0.469892 CCCCTTTGTTTGGGTGCTCT 60.470 55.000 0.00 0.00 43.09 4.09
1364 1395 0.675633 CCCTTTGTTTGGGTGCTCTG 59.324 55.000 0.00 0.00 39.82 3.35
1365 1396 1.402787 CCTTTGTTTGGGTGCTCTGT 58.597 50.000 0.00 0.00 0.00 3.41
1366 1397 1.067516 CCTTTGTTTGGGTGCTCTGTG 59.932 52.381 0.00 0.00 0.00 3.66
1367 1398 1.067516 CTTTGTTTGGGTGCTCTGTGG 59.932 52.381 0.00 0.00 0.00 4.17
1368 1399 0.033601 TTGTTTGGGTGCTCTGTGGT 60.034 50.000 0.00 0.00 0.00 4.16
1369 1400 0.751277 TGTTTGGGTGCTCTGTGGTG 60.751 55.000 0.00 0.00 0.00 4.17
1370 1401 1.152777 TTTGGGTGCTCTGTGGTGG 60.153 57.895 0.00 0.00 0.00 4.61
1371 1402 1.932156 TTTGGGTGCTCTGTGGTGGT 61.932 55.000 0.00 0.00 0.00 4.16
1372 1403 1.932156 TTGGGTGCTCTGTGGTGGTT 61.932 55.000 0.00 0.00 0.00 3.67
1373 1404 1.152756 GGGTGCTCTGTGGTGGTTT 60.153 57.895 0.00 0.00 0.00 3.27
1374 1405 1.455383 GGGTGCTCTGTGGTGGTTTG 61.455 60.000 0.00 0.00 0.00 2.93
1375 1406 1.360192 GTGCTCTGTGGTGGTTTGC 59.640 57.895 0.00 0.00 0.00 3.68
1376 1407 1.103398 GTGCTCTGTGGTGGTTTGCT 61.103 55.000 0.00 0.00 0.00 3.91
1377 1408 0.395586 TGCTCTGTGGTGGTTTGCTT 60.396 50.000 0.00 0.00 0.00 3.91
1378 1409 0.746659 GCTCTGTGGTGGTTTGCTTT 59.253 50.000 0.00 0.00 0.00 3.51
1379 1410 1.953686 GCTCTGTGGTGGTTTGCTTTA 59.046 47.619 0.00 0.00 0.00 1.85
1380 1411 2.558359 GCTCTGTGGTGGTTTGCTTTAT 59.442 45.455 0.00 0.00 0.00 1.40
1381 1412 3.005791 GCTCTGTGGTGGTTTGCTTTATT 59.994 43.478 0.00 0.00 0.00 1.40
1382 1413 4.501400 GCTCTGTGGTGGTTTGCTTTATTT 60.501 41.667 0.00 0.00 0.00 1.40
1383 1414 5.278758 GCTCTGTGGTGGTTTGCTTTATTTA 60.279 40.000 0.00 0.00 0.00 1.40
1384 1415 6.572314 GCTCTGTGGTGGTTTGCTTTATTTAT 60.572 38.462 0.00 0.00 0.00 1.40
1385 1416 7.362574 GCTCTGTGGTGGTTTGCTTTATTTATA 60.363 37.037 0.00 0.00 0.00 0.98
1386 1417 8.410673 TCTGTGGTGGTTTGCTTTATTTATAA 57.589 30.769 0.00 0.00 0.00 0.98
1387 1418 8.301002 TCTGTGGTGGTTTGCTTTATTTATAAC 58.699 33.333 0.00 0.00 0.00 1.89
1388 1419 7.952671 TGTGGTGGTTTGCTTTATTTATAACA 58.047 30.769 0.00 0.00 0.00 2.41
1389 1420 8.589338 TGTGGTGGTTTGCTTTATTTATAACAT 58.411 29.630 0.00 0.00 0.00 2.71
1390 1421 8.868916 GTGGTGGTTTGCTTTATTTATAACATG 58.131 33.333 0.00 0.00 0.00 3.21
1391 1422 8.589338 TGGTGGTTTGCTTTATTTATAACATGT 58.411 29.630 0.00 0.00 0.00 3.21
1392 1423 9.430623 GGTGGTTTGCTTTATTTATAACATGTT 57.569 29.630 16.68 16.68 0.00 2.71
1416 1447 3.347216 GGTACCATGCTGAATCAGTTGT 58.653 45.455 12.29 6.71 33.43 3.32
1417 1448 3.127548 GGTACCATGCTGAATCAGTTGTG 59.872 47.826 12.29 8.13 33.43 3.33
1418 1449 2.165167 ACCATGCTGAATCAGTTGTGG 58.835 47.619 20.73 20.73 36.36 4.17
1419 1450 1.475280 CCATGCTGAATCAGTTGTGGG 59.525 52.381 12.29 3.55 33.43 4.61
1420 1451 2.165167 CATGCTGAATCAGTTGTGGGT 58.835 47.619 12.29 0.00 33.43 4.51
1421 1452 2.363306 TGCTGAATCAGTTGTGGGTT 57.637 45.000 12.29 0.00 33.43 4.11
1422 1453 2.229792 TGCTGAATCAGTTGTGGGTTC 58.770 47.619 12.29 0.00 33.43 3.62
1423 1454 2.229792 GCTGAATCAGTTGTGGGTTCA 58.770 47.619 12.29 0.00 33.43 3.18
1424 1455 2.821969 GCTGAATCAGTTGTGGGTTCAT 59.178 45.455 12.29 0.00 32.14 2.57
1425 1456 3.366679 GCTGAATCAGTTGTGGGTTCATG 60.367 47.826 12.29 0.00 32.14 3.07
1426 1457 3.822735 CTGAATCAGTTGTGGGTTCATGT 59.177 43.478 1.31 0.00 32.14 3.21
1427 1458 4.214310 TGAATCAGTTGTGGGTTCATGTT 58.786 39.130 0.00 0.00 0.00 2.71
1428 1459 4.648762 TGAATCAGTTGTGGGTTCATGTTT 59.351 37.500 0.00 0.00 0.00 2.83
1429 1460 4.589216 ATCAGTTGTGGGTTCATGTTTG 57.411 40.909 0.00 0.00 0.00 2.93
1430 1461 2.692557 TCAGTTGTGGGTTCATGTTTGG 59.307 45.455 0.00 0.00 0.00 3.28
1431 1462 2.038659 AGTTGTGGGTTCATGTTTGGG 58.961 47.619 0.00 0.00 0.00 4.12
1432 1463 1.760029 GTTGTGGGTTCATGTTTGGGT 59.240 47.619 0.00 0.00 0.00 4.51
1433 1464 1.407936 TGTGGGTTCATGTTTGGGTG 58.592 50.000 0.00 0.00 0.00 4.61
1434 1465 0.033366 GTGGGTTCATGTTTGGGTGC 59.967 55.000 0.00 0.00 0.00 5.01
1435 1466 0.105760 TGGGTTCATGTTTGGGTGCT 60.106 50.000 0.00 0.00 0.00 4.40
1436 1467 0.603065 GGGTTCATGTTTGGGTGCTC 59.397 55.000 0.00 0.00 0.00 4.26
1437 1468 1.620822 GGTTCATGTTTGGGTGCTCT 58.379 50.000 0.00 0.00 0.00 4.09
1438 1469 1.270550 GGTTCATGTTTGGGTGCTCTG 59.729 52.381 0.00 0.00 0.00 3.35
1439 1470 1.956477 GTTCATGTTTGGGTGCTCTGT 59.044 47.619 0.00 0.00 0.00 3.41
1440 1471 1.608055 TCATGTTTGGGTGCTCTGTG 58.392 50.000 0.00 0.00 0.00 3.66
1441 1472 0.599558 CATGTTTGGGTGCTCTGTGG 59.400 55.000 0.00 0.00 0.00 4.17
1442 1473 1.181098 ATGTTTGGGTGCTCTGTGGC 61.181 55.000 0.00 0.00 0.00 5.01
1443 1474 2.594303 TTTGGGTGCTCTGTGGCG 60.594 61.111 0.00 0.00 34.52 5.69
1444 1475 4.641645 TTGGGTGCTCTGTGGCGG 62.642 66.667 0.00 0.00 34.52 6.13
1446 1477 4.643387 GGGTGCTCTGTGGCGGTT 62.643 66.667 0.00 0.00 34.52 4.44
1447 1478 2.594592 GGTGCTCTGTGGCGGTTT 60.595 61.111 0.00 0.00 34.52 3.27
1448 1479 2.639286 GTGCTCTGTGGCGGTTTG 59.361 61.111 0.00 0.00 34.52 2.93
1449 1480 3.286751 TGCTCTGTGGCGGTTTGC 61.287 61.111 0.00 0.00 45.38 3.68
1450 1481 2.980233 GCTCTGTGGCGGTTTGCT 60.980 61.111 0.00 0.00 45.43 3.91
1451 1482 2.555547 GCTCTGTGGCGGTTTGCTT 61.556 57.895 0.00 0.00 45.43 3.91
1452 1483 2.032981 CTCTGTGGCGGTTTGCTTT 58.967 52.632 0.00 0.00 45.43 3.51
1453 1484 1.234821 CTCTGTGGCGGTTTGCTTTA 58.765 50.000 0.00 0.00 45.43 1.85
1454 1485 1.812571 CTCTGTGGCGGTTTGCTTTAT 59.187 47.619 0.00 0.00 45.43 1.40
1455 1486 2.228822 CTCTGTGGCGGTTTGCTTTATT 59.771 45.455 0.00 0.00 45.43 1.40
1456 1487 2.625790 TCTGTGGCGGTTTGCTTTATTT 59.374 40.909 0.00 0.00 45.43 1.40
1457 1488 3.821600 TCTGTGGCGGTTTGCTTTATTTA 59.178 39.130 0.00 0.00 45.43 1.40
1458 1489 4.461081 TCTGTGGCGGTTTGCTTTATTTAT 59.539 37.500 0.00 0.00 45.43 1.40
1459 1490 5.648526 TCTGTGGCGGTTTGCTTTATTTATA 59.351 36.000 0.00 0.00 45.43 0.98
1460 1491 6.151312 TCTGTGGCGGTTTGCTTTATTTATAA 59.849 34.615 0.00 0.00 45.43 0.98
1461 1492 6.688578 TGTGGCGGTTTGCTTTATTTATAAA 58.311 32.000 0.00 0.00 45.43 1.40
1471 1502 5.427036 CTTTATTTATAAAGCGGGGCGAA 57.573 39.130 8.78 0.00 41.69 4.70
1472 1503 5.823353 CTTTATTTATAAAGCGGGGCGAAA 58.177 37.500 8.78 0.00 41.69 3.46
1473 1504 3.982576 ATTTATAAAGCGGGGCGAAAG 57.017 42.857 3.94 0.00 0.00 2.62
1499 1530 7.078228 CCTTTTTCGGTAATCTCAAACTGAAG 58.922 38.462 0.00 0.00 40.92 3.02
1531 1562 5.105023 AGCATAGTGATATATGGAGCCACAG 60.105 44.000 0.00 0.00 34.35 3.66
1566 1597 4.393680 AGCACGTTGTTGTTTTAGTCTGAA 59.606 37.500 0.00 0.00 0.00 3.02
1617 1743 9.525826 AGAAATCTTCAACTCAGGTGATTATTT 57.474 29.630 10.97 10.97 0.00 1.40
1689 1827 2.158740 TGCAGTACAAGGTTGGTTGCTA 60.159 45.455 13.10 0.00 35.43 3.49
1716 1854 6.073548 AGCTACTCAAAAGTTCATTTCAGACG 60.074 38.462 0.00 0.00 36.92 4.18
1806 1945 7.832708 CAATTCGTCTATTGGTGTCAGCATGA 61.833 42.308 5.39 2.55 35.88 3.07
2163 2335 4.887071 TGAAACAGCACACCATTTACTTCT 59.113 37.500 0.00 0.00 0.00 2.85
2587 2817 6.387220 AGCTCCTTAACATTGAGTTATAGGGT 59.613 38.462 0.00 0.00 42.03 4.34
2611 2841 7.434602 GGTCTGTATATGTAGAAAGAACGAACC 59.565 40.741 0.00 0.00 0.00 3.62
3014 3988 9.646427 GTTGCAAACTTAAAATGGTATTATCCA 57.354 29.630 0.00 0.00 45.32 3.41
3147 4152 9.213777 AGTCAGGTAATCTTCAGGTTATCAATA 57.786 33.333 0.00 0.00 0.00 1.90
3173 4178 4.022329 CCTTCAACCCAAACCTCACATAAC 60.022 45.833 0.00 0.00 0.00 1.89
3181 4186 3.456380 AACCTCACATAACAGGGCATT 57.544 42.857 0.00 0.00 33.57 3.56
3184 4189 2.947652 CCTCACATAACAGGGCATTCTG 59.052 50.000 0.00 0.00 40.40 3.02
3221 4246 9.775854 CTCAAGATGTTAGACATGGAAATATCT 57.224 33.333 0.00 4.28 39.27 1.98
3296 4323 4.264253 TCTAATTTCCACCAGACATGCTG 58.736 43.478 9.40 9.40 44.49 4.41
3627 4967 3.133901 TGGTTATCACTGACGCATACCAT 59.866 43.478 0.00 0.00 0.00 3.55
3815 5164 2.158784 AGGTAGCCGACTAGTAGGTGAG 60.159 54.545 21.45 0.00 0.00 3.51
3882 5238 3.806949 ACACCTTTAGGCCTCATTTGA 57.193 42.857 9.68 0.00 39.32 2.69
3889 5245 0.813184 AGGCCTCATTTGATTGCACG 59.187 50.000 0.00 0.00 0.00 5.34
4024 5380 1.739667 CAGTCCGCGTCATATCCCA 59.260 57.895 4.92 0.00 0.00 4.37
4123 5481 4.623932 TCCACATGAGTCTGCTTAGTTT 57.376 40.909 0.00 0.00 0.00 2.66
4135 5493 5.067283 GTCTGCTTAGTTTCCCTCTCTCTAG 59.933 48.000 0.00 0.00 0.00 2.43
4169 6523 2.146342 GCTGCTGTTCTGTGTACATGT 58.854 47.619 2.69 2.69 0.00 3.21
4195 6549 5.091261 TGCTTCTCTCTTAATTGACCTCC 57.909 43.478 0.00 0.00 0.00 4.30
4196 6550 4.532126 TGCTTCTCTCTTAATTGACCTCCA 59.468 41.667 0.00 0.00 0.00 3.86
4231 6585 2.122324 TTCCACGGGAGGGTTCCA 60.122 61.111 0.00 0.00 45.98 3.53
4249 6603 0.460284 CACTTCCGATGTCTTCCCCG 60.460 60.000 0.00 0.00 0.00 5.73
4268 6622 3.057876 CCCGACAAATTTTCCGTGATGAA 60.058 43.478 7.82 0.00 0.00 2.57
4308 6662 2.568956 TGAACCAGAGAATGTGAGGGAG 59.431 50.000 0.00 0.00 0.00 4.30
4325 6679 2.669569 GGTTTCGCCAGAGCAGCA 60.670 61.111 0.00 0.00 39.83 4.41
4348 6702 4.878439 ACAATGCAGTAGACTACAACGAA 58.122 39.130 14.95 0.00 0.00 3.85
4422 6776 2.393768 CCTCGCATGCTGACGCTTT 61.394 57.895 17.13 0.00 36.97 3.51
4424 6778 2.872925 CGCATGCTGACGCTTTGC 60.873 61.111 17.13 0.00 40.33 3.68
4437 6791 0.032540 GCTTTGCCAGTTGTTGAGGG 59.967 55.000 0.00 0.00 0.00 4.30
4467 6821 1.004044 CCAGTTCATGGCACCTTCTCT 59.996 52.381 0.00 0.00 43.83 3.10
4560 6914 3.041211 TGACAGGGAATGGATCTTCGAT 58.959 45.455 0.00 0.00 0.00 3.59
4657 7012 0.686441 GCCCTGGGTGTTATTTCCCC 60.686 60.000 15.56 0.00 42.80 4.81
4767 7124 3.824414 GGTGTTAACCTGAAACATCCG 57.176 47.619 2.48 0.00 43.84 4.18
4821 7178 1.073923 GGCCCTTCAACAAGAGAGGAA 59.926 52.381 0.00 0.00 30.59 3.36
4846 7206 3.543680 ATCAATCACTTCCCGTACCAG 57.456 47.619 0.00 0.00 0.00 4.00
4879 7239 4.742438 ACAACTTTATGTACCGTTGCAG 57.258 40.909 0.00 0.00 40.13 4.41
4881 7241 2.081462 ACTTTATGTACCGTTGCAGCC 58.919 47.619 0.00 0.00 0.00 4.85
4882 7242 2.080693 CTTTATGTACCGTTGCAGCCA 58.919 47.619 0.00 0.00 0.00 4.75
4884 7244 1.948104 TATGTACCGTTGCAGCCATC 58.052 50.000 0.00 0.00 0.00 3.51
4885 7245 1.089481 ATGTACCGTTGCAGCCATCG 61.089 55.000 0.00 0.00 34.73 3.84
4929 7356 1.070038 GTTGCCACCATTTTGATGCG 58.930 50.000 0.00 0.00 0.00 4.73
4951 7378 7.547227 TGCGTATGTATAGTATTGCTGATCAT 58.453 34.615 0.00 0.00 0.00 2.45
4967 7394 3.327464 TGATCATGTTCTCCAAGTCACCA 59.673 43.478 5.42 0.00 0.00 4.17
4973 7400 3.007940 TGTTCTCCAAGTCACCACCTATG 59.992 47.826 0.00 0.00 0.00 2.23
4979 7406 3.308402 CCAAGTCACCACCTATGTTGGAT 60.308 47.826 0.00 0.00 35.93 3.41
5005 7432 5.181811 TGATTGCATCTTGAAACTGTCGATT 59.818 36.000 0.00 0.00 0.00 3.34
5100 7565 5.321102 TGGAGATCAGATAGACCTAGCTTC 58.679 45.833 0.00 0.00 27.88 3.86
5120 7634 5.163683 GCTTCTCTTCAGCATCTAATTGCAA 60.164 40.000 0.00 0.00 45.23 4.08
5146 7660 8.796475 AGAACATAAGTCAAAATTGCATACTGT 58.204 29.630 0.00 0.00 0.00 3.55
5149 7663 8.023128 ACATAAGTCAAAATTGCATACTGTGTC 58.977 33.333 0.00 0.00 0.00 3.67
5193 7708 4.070716 GGATGCCATCTGAATTTCGAGAT 58.929 43.478 4.41 5.87 0.00 2.75
5205 7720 3.520290 TTTCGAGATACAACGCTCCAT 57.480 42.857 0.00 0.00 0.00 3.41
5216 7731 1.825090 ACGCTCCATGAAAAGCATCA 58.175 45.000 12.98 0.00 38.45 3.07
5372 7974 6.104622 CGTGCGTTTAAATGAAAATTATCGC 58.895 36.000 11.68 8.34 36.95 4.58
5490 8220 3.808728 TGTCATGGCTAAGCTATTGGAC 58.191 45.455 0.00 0.00 0.00 4.02
5495 8226 2.761767 TGGCTAAGCTATTGGACGTACA 59.238 45.455 0.00 0.00 0.00 2.90
5500 8231 4.530710 AAGCTATTGGACGTACACTTGA 57.469 40.909 0.00 0.00 0.00 3.02
5764 8499 8.355169 AGCCAACTATCATGCATTATTACAAAG 58.645 33.333 0.00 0.00 0.00 2.77
5767 8502 7.822161 ACTATCATGCATTATTACAAAGCCA 57.178 32.000 0.00 0.00 0.00 4.75
5773 8508 8.640651 TCATGCATTATTACAAAGCCAACATAT 58.359 29.630 0.00 0.00 0.00 1.78
5790 8525 7.077605 CCAACATATTTTATATGCTGGTCACG 58.922 38.462 15.93 0.00 36.76 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.650143 ACTAATCTAAAGGAAAAATTGGCTGA 57.350 30.769 0.00 0.00 0.00 4.26
1 2 9.710900 AAACTAATCTAAAGGAAAAATTGGCTG 57.289 29.630 0.00 0.00 0.00 4.85
32 33 8.175069 CGCGGATTTTTATTACATAGCACATAT 58.825 33.333 0.00 0.00 0.00 1.78
33 34 7.385478 TCGCGGATTTTTATTACATAGCACATA 59.615 33.333 6.13 0.00 0.00 2.29
34 35 6.203915 TCGCGGATTTTTATTACATAGCACAT 59.796 34.615 6.13 0.00 0.00 3.21
35 36 5.524281 TCGCGGATTTTTATTACATAGCACA 59.476 36.000 6.13 0.00 0.00 4.57
36 37 5.981174 TCGCGGATTTTTATTACATAGCAC 58.019 37.500 6.13 0.00 0.00 4.40
37 38 6.259167 AGTTCGCGGATTTTTATTACATAGCA 59.741 34.615 6.13 0.00 0.00 3.49
38 39 6.656003 AGTTCGCGGATTTTTATTACATAGC 58.344 36.000 6.13 0.00 0.00 2.97
39 40 7.526186 CGAAGTTCGCGGATTTTTATTACATAG 59.474 37.037 13.08 0.00 31.14 2.23
40 41 7.339207 CGAAGTTCGCGGATTTTTATTACATA 58.661 34.615 13.08 0.00 31.14 2.29
41 42 6.189567 CGAAGTTCGCGGATTTTTATTACAT 58.810 36.000 13.08 0.00 31.14 2.29
42 43 5.552807 CGAAGTTCGCGGATTTTTATTACA 58.447 37.500 13.08 0.00 31.14 2.41
57 58 0.789383 GCACATTTCGGCGAAGTTCG 60.789 55.000 22.52 20.87 43.89 3.95
58 59 0.454452 GGCACATTTCGGCGAAGTTC 60.454 55.000 22.52 12.21 0.00 3.01
59 60 1.579429 GGCACATTTCGGCGAAGTT 59.421 52.632 22.52 11.63 0.00 2.66
60 61 3.263941 GGCACATTTCGGCGAAGT 58.736 55.556 22.52 17.44 0.00 3.01
65 66 1.708822 AAATTTCGGCACATTTCGGC 58.291 45.000 0.00 0.00 0.00 5.54
66 67 3.723764 CGATAAATTTCGGCACATTTCGG 59.276 43.478 0.00 0.00 35.50 4.30
67 68 4.202158 CACGATAAATTTCGGCACATTTCG 59.798 41.667 4.68 0.00 43.33 3.46
68 69 5.092781 ACACGATAAATTTCGGCACATTTC 58.907 37.500 4.68 0.00 43.33 2.17
69 70 5.054390 ACACGATAAATTTCGGCACATTT 57.946 34.783 4.68 0.00 43.33 2.32
70 71 4.695217 ACACGATAAATTTCGGCACATT 57.305 36.364 4.68 0.00 43.33 2.71
71 72 4.695217 AACACGATAAATTTCGGCACAT 57.305 36.364 4.68 0.00 43.33 3.21
72 73 4.491234 AAACACGATAAATTTCGGCACA 57.509 36.364 4.68 0.00 43.33 4.57
73 74 4.494410 GCTAAACACGATAAATTTCGGCAC 59.506 41.667 4.68 0.00 43.33 5.01
74 75 4.437659 GGCTAAACACGATAAATTTCGGCA 60.438 41.667 4.68 0.00 43.33 5.69
75 76 4.033019 GGCTAAACACGATAAATTTCGGC 58.967 43.478 4.68 0.00 43.33 5.54
76 77 4.033129 TCGGCTAAACACGATAAATTTCGG 59.967 41.667 4.68 0.00 43.33 4.30
77 78 5.133707 TCGGCTAAACACGATAAATTTCG 57.866 39.130 0.00 0.00 44.56 3.46
78 79 7.964545 ATTTCGGCTAAACACGATAAATTTC 57.035 32.000 0.00 0.00 39.06 2.17
79 80 8.751302 AAATTTCGGCTAAACACGATAAATTT 57.249 26.923 0.00 0.00 39.06 1.82
81 82 9.659830 GATAAATTTCGGCTAAACACGATAAAT 57.340 29.630 0.00 0.00 39.06 1.40
82 83 8.666573 TGATAAATTTCGGCTAAACACGATAAA 58.333 29.630 0.00 0.00 39.06 1.40
83 84 8.199176 TGATAAATTTCGGCTAAACACGATAA 57.801 30.769 0.00 0.00 39.06 1.75
84 85 7.773864 TGATAAATTTCGGCTAAACACGATA 57.226 32.000 0.00 0.00 39.06 2.92
85 86 6.671614 TGATAAATTTCGGCTAAACACGAT 57.328 33.333 0.00 0.00 39.06 3.73
86 87 6.092944 ACATGATAAATTTCGGCTAAACACGA 59.907 34.615 0.00 0.00 37.33 4.35
87 88 6.255215 ACATGATAAATTTCGGCTAAACACG 58.745 36.000 0.00 0.00 0.00 4.49
88 89 8.372521 CAAACATGATAAATTTCGGCTAAACAC 58.627 33.333 0.00 0.00 0.00 3.32
89 90 7.543868 CCAAACATGATAAATTTCGGCTAAACA 59.456 33.333 0.00 0.00 0.00 2.83
90 91 7.464045 GCCAAACATGATAAATTTCGGCTAAAC 60.464 37.037 0.00 0.00 31.97 2.01
91 92 6.533367 GCCAAACATGATAAATTTCGGCTAAA 59.467 34.615 0.00 0.00 31.97 1.85
92 93 6.039616 GCCAAACATGATAAATTTCGGCTAA 58.960 36.000 0.00 0.00 31.97 3.09
93 94 5.451242 GGCCAAACATGATAAATTTCGGCTA 60.451 40.000 0.00 0.00 33.62 3.93
94 95 4.432712 GCCAAACATGATAAATTTCGGCT 58.567 39.130 0.00 0.00 31.97 5.52
95 96 3.555547 GGCCAAACATGATAAATTTCGGC 59.444 43.478 0.00 5.38 32.96 5.54
96 97 4.753233 TGGCCAAACATGATAAATTTCGG 58.247 39.130 0.61 0.00 0.00 4.30
97 98 6.718454 TTTGGCCAAACATGATAAATTTCG 57.282 33.333 27.13 0.00 0.00 3.46
98 99 9.911138 AAAATTTGGCCAAACATGATAAATTTC 57.089 25.926 32.62 0.00 36.07 2.17
102 103 8.877779 CGATAAAATTTGGCCAAACATGATAAA 58.122 29.630 32.62 13.14 32.51 1.40
103 104 8.037758 ACGATAAAATTTGGCCAAACATGATAA 58.962 29.630 32.62 14.67 32.51 1.75
104 105 7.490725 CACGATAAAATTTGGCCAAACATGATA 59.509 33.333 32.62 19.92 32.51 2.15
105 106 6.313411 CACGATAAAATTTGGCCAAACATGAT 59.687 34.615 32.62 21.38 32.51 2.45
106 107 5.636965 CACGATAAAATTTGGCCAAACATGA 59.363 36.000 32.62 17.69 32.51 3.07
107 108 5.407995 ACACGATAAAATTTGGCCAAACATG 59.592 36.000 32.62 19.07 32.51 3.21
108 109 5.546526 ACACGATAAAATTTGGCCAAACAT 58.453 33.333 32.62 21.31 32.51 2.71
109 110 4.950050 ACACGATAAAATTTGGCCAAACA 58.050 34.783 32.62 17.95 32.51 2.83
110 111 5.915812 AACACGATAAAATTTGGCCAAAC 57.084 34.783 32.62 17.51 32.51 2.93
111 112 7.307455 GCTTAAACACGATAAAATTTGGCCAAA 60.307 33.333 32.12 32.12 34.46 3.28
112 113 6.146347 GCTTAAACACGATAAAATTTGGCCAA 59.854 34.615 16.05 16.05 0.00 4.52
113 114 5.635700 GCTTAAACACGATAAAATTTGGCCA 59.364 36.000 0.00 0.00 0.00 5.36
114 115 5.062934 GGCTTAAACACGATAAAATTTGGCC 59.937 40.000 0.00 0.00 31.89 5.36
115 116 5.635700 TGGCTTAAACACGATAAAATTTGGC 59.364 36.000 0.00 0.00 0.00 4.52
116 117 7.644986 TTGGCTTAAACACGATAAAATTTGG 57.355 32.000 0.00 0.00 0.00 3.28
117 118 8.912112 GTTTGGCTTAAACACGATAAAATTTG 57.088 30.769 10.77 0.00 46.29 2.32
131 132 1.595466 TCGGCGAAGTTTGGCTTAAA 58.405 45.000 7.35 0.00 37.59 1.52
132 133 1.264826 GTTCGGCGAAGTTTGGCTTAA 59.735 47.619 24.41 6.23 37.59 1.85
133 134 0.869730 GTTCGGCGAAGTTTGGCTTA 59.130 50.000 24.41 0.00 37.59 3.09
134 135 0.818040 AGTTCGGCGAAGTTTGGCTT 60.818 50.000 24.41 0.00 40.76 4.35
135 136 0.818040 AAGTTCGGCGAAGTTTGGCT 60.818 50.000 31.04 17.71 32.04 4.75
136 137 0.385598 GAAGTTCGGCGAAGTTTGGC 60.386 55.000 35.00 22.66 35.63 4.52
137 138 1.226746 AGAAGTTCGGCGAAGTTTGG 58.773 50.000 35.00 0.00 35.63 3.28
138 139 3.334272 AAAGAAGTTCGGCGAAGTTTG 57.666 42.857 35.00 0.00 35.63 2.93
139 140 5.684550 ATAAAAGAAGTTCGGCGAAGTTT 57.315 34.783 35.00 25.81 35.63 2.66
140 141 5.684550 AATAAAAGAAGTTCGGCGAAGTT 57.315 34.783 35.18 35.18 37.82 2.66
141 142 5.684550 AAATAAAAGAAGTTCGGCGAAGT 57.315 34.783 24.41 23.86 0.00 3.01
142 143 8.496872 TTTAAAATAAAAGAAGTTCGGCGAAG 57.503 30.769 24.41 0.00 0.00 3.79
143 144 8.853469 TTTTAAAATAAAAGAAGTTCGGCGAA 57.147 26.923 19.83 19.83 0.00 4.70
154 155 9.816354 GCTCCAGGCATATTTTAAAATAAAAGA 57.184 29.630 21.33 12.60 41.35 2.52
155 156 8.755018 CGCTCCAGGCATATTTTAAAATAAAAG 58.245 33.333 21.33 15.60 41.91 2.27
156 157 7.708752 CCGCTCCAGGCATATTTTAAAATAAAA 59.291 33.333 21.33 4.76 41.91 1.52
157 158 7.206687 CCGCTCCAGGCATATTTTAAAATAAA 58.793 34.615 21.33 5.43 41.91 1.40
158 159 6.744112 CCGCTCCAGGCATATTTTAAAATAA 58.256 36.000 21.33 8.20 41.91 1.40
159 160 6.325919 CCGCTCCAGGCATATTTTAAAATA 57.674 37.500 20.11 20.11 41.91 1.40
160 161 5.200368 CCGCTCCAGGCATATTTTAAAAT 57.800 39.130 17.18 17.18 41.91 1.82
161 162 4.647424 CCGCTCCAGGCATATTTTAAAA 57.353 40.909 2.51 2.51 41.91 1.52
174 175 4.785453 GTCCCAAGGCCGCTCCAG 62.785 72.222 0.00 0.00 37.29 3.86
177 178 4.785453 CAGGTCCCAAGGCCGCTC 62.785 72.222 0.00 0.00 0.00 5.03
182 183 4.357279 AGCTGCAGGTCCCAAGGC 62.357 66.667 13.85 0.00 0.00 4.35
183 184 2.360852 CAGCTGCAGGTCCCAAGG 60.361 66.667 17.16 0.00 0.00 3.61
184 185 2.360852 CCAGCTGCAGGTCCCAAG 60.361 66.667 17.16 4.16 0.00 3.61
185 186 3.970410 CCCAGCTGCAGGTCCCAA 61.970 66.667 17.16 0.00 0.00 4.12
188 189 4.416738 GTCCCCAGCTGCAGGTCC 62.417 72.222 17.16 0.00 0.00 4.46
189 190 4.416738 GGTCCCCAGCTGCAGGTC 62.417 72.222 17.16 13.29 0.00 3.85
191 192 3.970410 TTGGTCCCCAGCTGCAGG 61.970 66.667 17.12 11.57 33.81 4.85
192 193 2.674380 GTTGGTCCCCAGCTGCAG 60.674 66.667 10.11 10.11 33.81 4.41
193 194 3.177884 AGTTGGTCCCCAGCTGCA 61.178 61.111 8.66 0.00 43.28 4.41
194 195 2.360475 GAGTTGGTCCCCAGCTGC 60.360 66.667 8.66 0.00 44.87 5.25
195 196 2.046892 CGAGTTGGTCCCCAGCTG 60.047 66.667 6.78 6.78 44.87 4.24
197 198 2.047179 GACGAGTTGGTCCCCAGC 60.047 66.667 0.00 0.00 33.81 4.85
203 204 2.168666 GACCTGGGGACGAGTTGGTC 62.169 65.000 0.00 0.00 37.42 4.02
204 205 2.122547 ACCTGGGGACGAGTTGGT 60.123 61.111 0.00 0.00 0.00 3.67
205 206 2.663196 GACCTGGGGACGAGTTGG 59.337 66.667 0.00 0.00 0.00 3.77
206 207 1.764571 TTGGACCTGGGGACGAGTTG 61.765 60.000 0.00 0.00 0.00 3.16
207 208 0.840722 ATTGGACCTGGGGACGAGTT 60.841 55.000 0.00 0.00 0.00 3.01
208 209 0.840722 AATTGGACCTGGGGACGAGT 60.841 55.000 0.00 0.00 0.00 4.18
209 210 0.328258 AAATTGGACCTGGGGACGAG 59.672 55.000 0.00 0.00 0.00 4.18
210 211 0.774908 AAAATTGGACCTGGGGACGA 59.225 50.000 0.00 0.00 0.00 4.20
211 212 1.627864 AAAAATTGGACCTGGGGACG 58.372 50.000 0.00 0.00 0.00 4.79
212 213 2.490509 CGTAAAAATTGGACCTGGGGAC 59.509 50.000 0.00 0.00 0.00 4.46
213 214 2.797786 CGTAAAAATTGGACCTGGGGA 58.202 47.619 0.00 0.00 0.00 4.81
214 215 1.203758 GCGTAAAAATTGGACCTGGGG 59.796 52.381 0.00 0.00 0.00 4.96
215 216 1.203758 GGCGTAAAAATTGGACCTGGG 59.796 52.381 0.00 0.00 0.00 4.45
216 217 1.135517 CGGCGTAAAAATTGGACCTGG 60.136 52.381 0.00 0.00 0.00 4.45
217 218 1.135517 CCGGCGTAAAAATTGGACCTG 60.136 52.381 6.01 0.00 0.00 4.00
218 219 1.170442 CCGGCGTAAAAATTGGACCT 58.830 50.000 6.01 0.00 0.00 3.85
219 220 0.457166 GCCGGCGTAAAAATTGGACC 60.457 55.000 12.58 0.00 0.00 4.46
220 221 0.524414 AGCCGGCGTAAAAATTGGAC 59.476 50.000 23.20 0.00 0.00 4.02
221 222 0.806241 GAGCCGGCGTAAAAATTGGA 59.194 50.000 23.20 0.00 0.00 3.53
222 223 0.523966 TGAGCCGGCGTAAAAATTGG 59.476 50.000 23.20 0.00 0.00 3.16
223 224 1.613270 GTGAGCCGGCGTAAAAATTG 58.387 50.000 23.20 0.00 0.00 2.32
224 225 0.524414 GGTGAGCCGGCGTAAAAATT 59.476 50.000 23.20 0.00 0.00 1.82
225 226 1.310216 GGGTGAGCCGGCGTAAAAAT 61.310 55.000 23.20 0.00 34.97 1.82
226 227 1.967494 GGGTGAGCCGGCGTAAAAA 60.967 57.895 23.20 0.72 34.97 1.94
227 228 2.358984 GGGTGAGCCGGCGTAAAA 60.359 61.111 23.20 2.78 34.97 1.52
228 229 4.397832 GGGGTGAGCCGGCGTAAA 62.398 66.667 23.20 4.88 34.97 2.01
229 230 3.961225 TAGGGGTGAGCCGGCGTAA 62.961 63.158 23.20 7.86 34.97 3.18
230 231 4.445710 TAGGGGTGAGCCGGCGTA 62.446 66.667 23.20 11.68 34.97 4.42
234 235 3.854669 CAGCTAGGGGTGAGCCGG 61.855 72.222 0.00 0.00 42.91 6.13
235 236 4.537433 GCAGCTAGGGGTGAGCCG 62.537 72.222 0.00 0.00 42.91 5.52
236 237 2.276309 ATTGCAGCTAGGGGTGAGCC 62.276 60.000 0.00 0.00 42.91 4.70
237 238 0.394899 AATTGCAGCTAGGGGTGAGC 60.395 55.000 0.00 0.00 42.91 4.26
238 239 2.134789 AAATTGCAGCTAGGGGTGAG 57.865 50.000 0.00 0.00 42.91 3.51
239 240 2.603075 AAAATTGCAGCTAGGGGTGA 57.397 45.000 0.00 0.00 42.91 4.02
240 241 2.689983 CCTAAAATTGCAGCTAGGGGTG 59.310 50.000 0.00 0.00 43.11 4.61
241 242 2.950418 GCCTAAAATTGCAGCTAGGGGT 60.950 50.000 6.76 0.00 32.95 4.95
242 243 1.683385 GCCTAAAATTGCAGCTAGGGG 59.317 52.381 6.76 3.52 32.95 4.79
243 244 1.334869 CGCCTAAAATTGCAGCTAGGG 59.665 52.381 6.76 3.10 32.95 3.53
244 245 1.268743 GCGCCTAAAATTGCAGCTAGG 60.269 52.381 0.00 0.00 35.06 3.02
245 246 1.672881 AGCGCCTAAAATTGCAGCTAG 59.327 47.619 2.29 0.00 36.25 3.42
246 247 1.750193 AGCGCCTAAAATTGCAGCTA 58.250 45.000 2.29 0.00 36.25 3.32
247 248 0.890683 AAGCGCCTAAAATTGCAGCT 59.109 45.000 2.29 0.00 38.38 4.24
248 249 1.271876 GAAGCGCCTAAAATTGCAGC 58.728 50.000 2.29 0.00 0.00 5.25
249 250 1.795162 CGGAAGCGCCTAAAATTGCAG 60.795 52.381 2.29 0.00 0.00 4.41
250 251 0.170116 CGGAAGCGCCTAAAATTGCA 59.830 50.000 2.29 0.00 0.00 4.08
251 252 0.525455 CCGGAAGCGCCTAAAATTGC 60.525 55.000 2.29 0.00 0.00 3.56
252 253 0.100503 CCCGGAAGCGCCTAAAATTG 59.899 55.000 0.73 0.00 0.00 2.32
253 254 1.035385 CCCCGGAAGCGCCTAAAATT 61.035 55.000 0.73 0.00 0.00 1.82
254 255 1.453197 CCCCGGAAGCGCCTAAAAT 60.453 57.895 0.73 0.00 0.00 1.82
255 256 2.045731 CCCCGGAAGCGCCTAAAA 60.046 61.111 0.73 0.00 0.00 1.52
256 257 4.104183 CCCCCGGAAGCGCCTAAA 62.104 66.667 0.73 0.00 0.00 1.85
281 282 1.522580 GAACGAGGGCATCTCCAGC 60.523 63.158 0.00 0.00 39.30 4.85
282 283 1.144936 GGAACGAGGGCATCTCCAG 59.855 63.158 2.89 0.00 39.30 3.86
283 284 1.306141 AGGAACGAGGGCATCTCCA 60.306 57.895 9.69 0.00 39.30 3.86
284 285 1.144936 CAGGAACGAGGGCATCTCC 59.855 63.158 0.00 0.00 39.30 3.71
285 286 1.522580 GCAGGAACGAGGGCATCTC 60.523 63.158 0.00 0.00 39.10 2.75
286 287 1.630126 ATGCAGGAACGAGGGCATCT 61.630 55.000 0.00 0.00 42.96 2.90
287 288 0.106708 TATGCAGGAACGAGGGCATC 59.893 55.000 0.74 0.00 45.09 3.91
288 289 3.001514 ATGCAGGAACGAGGGCAT 58.998 55.556 0.00 0.00 41.81 4.40
289 290 1.522092 CTATGCAGGAACGAGGGCA 59.478 57.895 0.00 0.00 41.00 5.36
290 291 1.227674 CCTATGCAGGAACGAGGGC 60.228 63.158 0.00 0.00 45.91 5.19
291 292 1.227674 GCCTATGCAGGAACGAGGG 60.228 63.158 0.00 0.00 45.91 4.30
292 293 1.227674 GGCCTATGCAGGAACGAGG 60.228 63.158 0.00 0.00 45.91 4.63
293 294 1.592669 CGGCCTATGCAGGAACGAG 60.593 63.158 0.00 0.00 45.91 4.18
294 295 2.016393 CTCGGCCTATGCAGGAACGA 62.016 60.000 0.00 10.34 45.91 3.85
295 296 1.592669 CTCGGCCTATGCAGGAACG 60.593 63.158 0.00 0.00 45.91 3.95
296 297 0.178068 TTCTCGGCCTATGCAGGAAC 59.822 55.000 0.00 0.00 45.91 3.62
297 298 0.908910 TTTCTCGGCCTATGCAGGAA 59.091 50.000 0.00 0.00 45.91 3.36
298 299 0.908910 TTTTCTCGGCCTATGCAGGA 59.091 50.000 0.00 0.00 45.91 3.86
299 300 1.750193 TTTTTCTCGGCCTATGCAGG 58.250 50.000 0.00 0.00 45.77 4.85
315 316 0.875059 GCTAGCTGCGGTGAGTTTTT 59.125 50.000 7.70 0.00 0.00 1.94
316 317 0.955919 GGCTAGCTGCGGTGAGTTTT 60.956 55.000 15.72 0.00 44.05 2.43
317 318 1.376037 GGCTAGCTGCGGTGAGTTT 60.376 57.895 15.72 0.00 44.05 2.66
318 319 2.266055 GGCTAGCTGCGGTGAGTT 59.734 61.111 15.72 0.00 44.05 3.01
319 320 3.775654 GGGCTAGCTGCGGTGAGT 61.776 66.667 15.72 0.00 44.05 3.41
320 321 4.537433 GGGGCTAGCTGCGGTGAG 62.537 72.222 15.72 0.00 44.05 3.51
321 322 3.672338 TAGGGGCTAGCTGCGGTGA 62.672 63.158 15.72 0.00 44.05 4.02
322 323 3.154473 TAGGGGCTAGCTGCGGTG 61.154 66.667 15.72 0.00 44.05 4.94
323 324 3.155167 GTAGGGGCTAGCTGCGGT 61.155 66.667 15.72 0.00 44.05 5.68
324 325 3.930012 GGTAGGGGCTAGCTGCGG 61.930 72.222 15.72 0.00 44.05 5.69
325 326 4.286320 CGGTAGGGGCTAGCTGCG 62.286 72.222 15.72 0.00 44.05 5.18
326 327 4.610714 GCGGTAGGGGCTAGCTGC 62.611 72.222 15.72 0.00 41.94 5.25
327 328 3.930012 GGCGGTAGGGGCTAGCTG 61.930 72.222 15.72 0.00 32.94 4.24
330 331 3.296054 CTCGGCGGTAGGGGCTAG 61.296 72.222 7.21 0.00 0.00 3.42
331 332 3.812544 TCTCGGCGGTAGGGGCTA 61.813 66.667 7.21 0.00 0.00 3.93
334 335 3.834799 GTGTCTCGGCGGTAGGGG 61.835 72.222 7.21 0.00 0.00 4.79
335 336 2.351336 GATGTGTCTCGGCGGTAGGG 62.351 65.000 7.21 0.00 0.00 3.53
336 337 1.065928 GATGTGTCTCGGCGGTAGG 59.934 63.158 7.21 0.00 0.00 3.18
337 338 1.298413 CGATGTGTCTCGGCGGTAG 60.298 63.158 7.21 0.00 35.03 3.18
338 339 1.712018 CTCGATGTGTCTCGGCGGTA 61.712 60.000 7.21 0.00 39.13 4.02
339 340 3.052620 CTCGATGTGTCTCGGCGGT 62.053 63.158 7.21 0.00 39.13 5.68
340 341 2.278206 CTCGATGTGTCTCGGCGG 60.278 66.667 7.21 0.00 39.13 6.13
341 342 2.951745 GCTCGATGTGTCTCGGCG 60.952 66.667 0.00 0.00 39.13 6.46
342 343 2.583593 GGCTCGATGTGTCTCGGC 60.584 66.667 0.00 0.00 39.13 5.54
343 344 1.226802 CTGGCTCGATGTGTCTCGG 60.227 63.158 0.00 0.00 39.13 4.63
344 345 1.875813 GCTGGCTCGATGTGTCTCG 60.876 63.158 0.00 0.00 39.99 4.04
345 346 1.520342 GGCTGGCTCGATGTGTCTC 60.520 63.158 0.00 0.00 0.00 3.36
346 347 2.581354 GGCTGGCTCGATGTGTCT 59.419 61.111 0.00 0.00 0.00 3.41
347 348 2.887568 CGGCTGGCTCGATGTGTC 60.888 66.667 0.00 0.00 0.00 3.67
362 363 4.918201 GGGATGGGAAGCGAGCGG 62.918 72.222 0.00 0.00 0.00 5.52
364 365 3.849951 TCGGGATGGGAAGCGAGC 61.850 66.667 0.00 0.00 0.00 5.03
365 366 2.107141 GTCGGGATGGGAAGCGAG 59.893 66.667 0.00 0.00 0.00 5.03
366 367 3.467226 GGTCGGGATGGGAAGCGA 61.467 66.667 0.00 0.00 0.00 4.93
367 368 3.447025 GAGGTCGGGATGGGAAGCG 62.447 68.421 0.00 0.00 0.00 4.68
368 369 2.506472 GAGGTCGGGATGGGAAGC 59.494 66.667 0.00 0.00 0.00 3.86
369 370 2.444256 GGGAGGTCGGGATGGGAAG 61.444 68.421 0.00 0.00 0.00 3.46
370 371 2.366435 GGGAGGTCGGGATGGGAA 60.366 66.667 0.00 0.00 0.00 3.97
371 372 4.853142 CGGGAGGTCGGGATGGGA 62.853 72.222 0.00 0.00 0.00 4.37
373 374 3.537874 GACGGGAGGTCGGGATGG 61.538 72.222 0.00 0.00 35.61 3.51
594 601 4.702131 GCTGAACTGGTACCTCAAATCAAT 59.298 41.667 14.36 0.00 0.00 2.57
647 654 6.295859 GGAAGAGCAAACCCTAAATCCAAAAT 60.296 38.462 0.00 0.00 0.00 1.82
702 710 8.614469 TTCATACAATGACATAACTGAACACA 57.386 30.769 0.00 0.00 39.39 3.72
770 778 3.381272 TCTCAGTTTTGCACCAAAGAAGG 59.619 43.478 0.00 0.00 34.72 3.46
779 787 5.008019 TCTCAATTGAGTCTCAGTTTTGCAC 59.992 40.000 29.80 0.00 42.60 4.57
905 914 8.670521 ATCTAGAATTTGAAAACAGGGGATTT 57.329 30.769 0.00 0.00 0.00 2.17
932 942 1.806461 GAGGAGTGACGACAGTGGCA 61.806 60.000 0.00 0.00 0.00 4.92
949 959 1.274728 CTGGGTCTGAGTGGTGAAGAG 59.725 57.143 0.00 0.00 0.00 2.85
953 963 0.837691 ATGCTGGGTCTGAGTGGTGA 60.838 55.000 0.00 0.00 0.00 4.02
997 1007 0.603065 GGGTTGTTGCTTCCCATCAC 59.397 55.000 0.00 0.00 40.79 3.06
1147 1175 1.221213 AAAGGGGATTAGGGCAGGCA 61.221 55.000 0.00 0.00 0.00 4.75
1201 1230 2.892640 CTCGTCCGGAATCTGCCA 59.107 61.111 5.23 0.00 0.00 4.92
1260 1289 2.139323 ATACTCACAGGCGTAGGTCA 57.861 50.000 0.00 0.00 0.00 4.02
1279 1308 4.175962 AGAGGAATTGGAGGTGTAAGGAA 58.824 43.478 0.00 0.00 0.00 3.36
1335 1366 0.537371 AAACAAAGGGGGTCTCAGCG 60.537 55.000 0.00 0.00 0.00 5.18
1352 1383 1.152777 CCACCACAGAGCACCCAAA 60.153 57.895 0.00 0.00 0.00 3.28
1354 1385 1.932156 AAACCACCACAGAGCACCCA 61.932 55.000 0.00 0.00 0.00 4.51
1355 1386 1.152756 AAACCACCACAGAGCACCC 60.153 57.895 0.00 0.00 0.00 4.61
1356 1387 2.032981 CAAACCACCACAGAGCACC 58.967 57.895 0.00 0.00 0.00 5.01
1357 1388 1.103398 AGCAAACCACCACAGAGCAC 61.103 55.000 0.00 0.00 0.00 4.40
1359 1390 0.746659 AAAGCAAACCACCACAGAGC 59.253 50.000 0.00 0.00 0.00 4.09
1360 1391 4.853924 AATAAAGCAAACCACCACAGAG 57.146 40.909 0.00 0.00 0.00 3.35
1361 1392 6.909550 ATAAATAAAGCAAACCACCACAGA 57.090 33.333 0.00 0.00 0.00 3.41
1362 1393 8.085296 TGTTATAAATAAAGCAAACCACCACAG 58.915 33.333 0.00 0.00 0.00 3.66
1363 1394 7.952671 TGTTATAAATAAAGCAAACCACCACA 58.047 30.769 0.00 0.00 0.00 4.17
1364 1395 8.868916 CATGTTATAAATAAAGCAAACCACCAC 58.131 33.333 0.00 0.00 0.00 4.16
1365 1396 8.589338 ACATGTTATAAATAAAGCAAACCACCA 58.411 29.630 0.00 0.00 0.00 4.17
1366 1397 8.996024 ACATGTTATAAATAAAGCAAACCACC 57.004 30.769 0.00 0.00 0.00 4.61
1374 1405 9.524106 GGTACCCAAACATGTTATAAATAAAGC 57.476 33.333 12.39 0.00 0.00 3.51
1378 1409 8.634444 GCATGGTACCCAAACATGTTATAAATA 58.366 33.333 12.39 0.00 42.89 1.40
1379 1410 7.344352 AGCATGGTACCCAAACATGTTATAAAT 59.656 33.333 12.39 0.00 42.89 1.40
1380 1411 6.665680 AGCATGGTACCCAAACATGTTATAAA 59.334 34.615 12.39 0.00 42.89 1.40
1381 1412 6.096141 CAGCATGGTACCCAAACATGTTATAA 59.904 38.462 12.39 0.00 42.89 0.98
1382 1413 5.592282 CAGCATGGTACCCAAACATGTTATA 59.408 40.000 12.39 0.00 42.89 0.98
1383 1414 4.402155 CAGCATGGTACCCAAACATGTTAT 59.598 41.667 12.39 0.00 42.89 1.89
1384 1415 3.761218 CAGCATGGTACCCAAACATGTTA 59.239 43.478 12.39 0.00 42.89 2.41
1385 1416 2.562298 CAGCATGGTACCCAAACATGTT 59.438 45.455 10.07 4.92 42.89 2.71
1386 1417 2.170166 CAGCATGGTACCCAAACATGT 58.830 47.619 10.07 0.00 42.89 3.21
1387 1418 2.445427 TCAGCATGGTACCCAAACATG 58.555 47.619 10.07 7.12 43.58 3.21
1388 1419 2.897271 TCAGCATGGTACCCAAACAT 57.103 45.000 10.07 0.00 36.95 2.71
1389 1420 2.666272 TTCAGCATGGTACCCAAACA 57.334 45.000 10.07 0.00 36.95 2.83
1390 1421 3.088532 TGATTCAGCATGGTACCCAAAC 58.911 45.455 10.07 0.00 36.95 2.93
1391 1422 3.245229 ACTGATTCAGCATGGTACCCAAA 60.245 43.478 13.64 0.00 33.87 3.28
1392 1423 2.308570 ACTGATTCAGCATGGTACCCAA 59.691 45.455 13.64 0.00 33.87 4.12
1393 1424 1.915489 ACTGATTCAGCATGGTACCCA 59.085 47.619 13.64 0.00 34.42 4.51
1394 1425 2.684881 CAACTGATTCAGCATGGTACCC 59.315 50.000 13.64 0.00 34.37 3.69
1395 1426 3.127548 CACAACTGATTCAGCATGGTACC 59.872 47.826 13.64 4.43 34.37 3.34
1396 1427 3.127548 CCACAACTGATTCAGCATGGTAC 59.872 47.826 13.64 0.00 34.37 3.34
1397 1428 3.346315 CCACAACTGATTCAGCATGGTA 58.654 45.455 13.64 0.00 34.37 3.25
1398 1429 2.165167 CCACAACTGATTCAGCATGGT 58.835 47.619 13.64 4.24 34.37 3.55
1399 1430 1.475280 CCCACAACTGATTCAGCATGG 59.525 52.381 13.64 16.41 34.37 3.66
1400 1431 2.165167 ACCCACAACTGATTCAGCATG 58.835 47.619 13.64 14.44 34.37 4.06
1401 1432 2.592102 ACCCACAACTGATTCAGCAT 57.408 45.000 13.64 0.19 34.37 3.79
1402 1433 2.229792 GAACCCACAACTGATTCAGCA 58.770 47.619 13.64 0.00 34.37 4.41
1403 1434 2.229792 TGAACCCACAACTGATTCAGC 58.770 47.619 13.64 0.00 34.37 4.26
1404 1435 3.822735 ACATGAACCCACAACTGATTCAG 59.177 43.478 12.17 12.17 37.52 3.02
1405 1436 3.831323 ACATGAACCCACAACTGATTCA 58.169 40.909 0.00 0.00 34.03 2.57
1406 1437 4.853924 AACATGAACCCACAACTGATTC 57.146 40.909 0.00 0.00 0.00 2.52
1407 1438 4.202243 CCAAACATGAACCCACAACTGATT 60.202 41.667 0.00 0.00 0.00 2.57
1408 1439 3.321682 CCAAACATGAACCCACAACTGAT 59.678 43.478 0.00 0.00 0.00 2.90
1409 1440 2.692557 CCAAACATGAACCCACAACTGA 59.307 45.455 0.00 0.00 0.00 3.41
1410 1441 2.224018 CCCAAACATGAACCCACAACTG 60.224 50.000 0.00 0.00 0.00 3.16
1411 1442 2.038659 CCCAAACATGAACCCACAACT 58.961 47.619 0.00 0.00 0.00 3.16
1412 1443 1.760029 ACCCAAACATGAACCCACAAC 59.240 47.619 0.00 0.00 0.00 3.32
1413 1444 1.759445 CACCCAAACATGAACCCACAA 59.241 47.619 0.00 0.00 0.00 3.33
1414 1445 1.407936 CACCCAAACATGAACCCACA 58.592 50.000 0.00 0.00 0.00 4.17
1415 1446 0.033366 GCACCCAAACATGAACCCAC 59.967 55.000 0.00 0.00 0.00 4.61
1416 1447 0.105760 AGCACCCAAACATGAACCCA 60.106 50.000 0.00 0.00 0.00 4.51
1417 1448 0.603065 GAGCACCCAAACATGAACCC 59.397 55.000 0.00 0.00 0.00 4.11
1418 1449 1.270550 CAGAGCACCCAAACATGAACC 59.729 52.381 0.00 0.00 0.00 3.62
1419 1450 1.956477 ACAGAGCACCCAAACATGAAC 59.044 47.619 0.00 0.00 0.00 3.18
1420 1451 1.955778 CACAGAGCACCCAAACATGAA 59.044 47.619 0.00 0.00 0.00 2.57
1421 1452 1.608055 CACAGAGCACCCAAACATGA 58.392 50.000 0.00 0.00 0.00 3.07
1422 1453 0.599558 CCACAGAGCACCCAAACATG 59.400 55.000 0.00 0.00 0.00 3.21
1423 1454 1.181098 GCCACAGAGCACCCAAACAT 61.181 55.000 0.00 0.00 0.00 2.71
1424 1455 1.827789 GCCACAGAGCACCCAAACA 60.828 57.895 0.00 0.00 0.00 2.83
1425 1456 2.908073 CGCCACAGAGCACCCAAAC 61.908 63.158 0.00 0.00 0.00 2.93
1426 1457 2.594303 CGCCACAGAGCACCCAAA 60.594 61.111 0.00 0.00 0.00 3.28
1427 1458 4.641645 CCGCCACAGAGCACCCAA 62.642 66.667 0.00 0.00 0.00 4.12
1429 1460 4.643387 AACCGCCACAGAGCACCC 62.643 66.667 0.00 0.00 0.00 4.61
1430 1461 2.594592 AAACCGCCACAGAGCACC 60.595 61.111 0.00 0.00 0.00 5.01
1431 1462 2.639286 CAAACCGCCACAGAGCAC 59.361 61.111 0.00 0.00 0.00 4.40
1432 1463 3.286751 GCAAACCGCCACAGAGCA 61.287 61.111 0.00 0.00 32.94 4.26
1433 1464 2.075426 AAAGCAAACCGCCACAGAGC 62.075 55.000 0.00 0.00 44.04 4.09
1434 1465 1.234821 TAAAGCAAACCGCCACAGAG 58.765 50.000 0.00 0.00 44.04 3.35
1435 1466 1.904287 ATAAAGCAAACCGCCACAGA 58.096 45.000 0.00 0.00 44.04 3.41
1436 1467 2.723124 AATAAAGCAAACCGCCACAG 57.277 45.000 0.00 0.00 44.04 3.66
1437 1468 4.792521 ATAAATAAAGCAAACCGCCACA 57.207 36.364 0.00 0.00 44.04 4.17
1438 1469 7.216920 CTTTATAAATAAAGCAAACCGCCAC 57.783 36.000 9.01 0.00 41.69 5.01
1450 1481 5.733937 GCTTTCGCCCCGCTTTATAAATAAA 60.734 40.000 0.00 0.00 0.00 1.40
1451 1482 4.261280 GCTTTCGCCCCGCTTTATAAATAA 60.261 41.667 0.00 0.00 0.00 1.40
1452 1483 3.251487 GCTTTCGCCCCGCTTTATAAATA 59.749 43.478 0.00 0.00 0.00 1.40
1453 1484 2.034179 GCTTTCGCCCCGCTTTATAAAT 59.966 45.455 0.00 0.00 0.00 1.40
1454 1485 1.402613 GCTTTCGCCCCGCTTTATAAA 59.597 47.619 0.00 0.00 0.00 1.40
1455 1486 1.018910 GCTTTCGCCCCGCTTTATAA 58.981 50.000 0.00 0.00 0.00 0.98
1456 1487 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
1457 1488 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
1467 1498 2.691984 TTACCGAAAAAGGCTTTCGC 57.308 45.000 13.76 7.41 46.89 4.70
1469 1500 5.622770 TGAGATTACCGAAAAAGGCTTTC 57.377 39.130 13.76 0.41 33.69 2.62
1470 1501 6.040504 AGTTTGAGATTACCGAAAAAGGCTTT 59.959 34.615 6.68 6.68 33.69 3.51
1471 1502 5.535030 AGTTTGAGATTACCGAAAAAGGCTT 59.465 36.000 0.00 0.00 33.69 4.35
1472 1503 5.048713 CAGTTTGAGATTACCGAAAAAGGCT 60.049 40.000 0.00 0.00 33.69 4.58
1473 1504 5.048991 TCAGTTTGAGATTACCGAAAAAGGC 60.049 40.000 0.00 0.00 33.69 4.35
1474 1505 6.554334 TCAGTTTGAGATTACCGAAAAAGG 57.446 37.500 0.00 0.00 37.30 3.11
1475 1506 7.639945 ACTTCAGTTTGAGATTACCGAAAAAG 58.360 34.615 0.00 0.00 0.00 2.27
1476 1507 7.562454 ACTTCAGTTTGAGATTACCGAAAAA 57.438 32.000 0.00 0.00 0.00 1.94
1477 1508 7.562454 AACTTCAGTTTGAGATTACCGAAAA 57.438 32.000 0.00 0.00 33.93 2.29
1478 1509 7.562454 AAACTTCAGTTTGAGATTACCGAAA 57.438 32.000 4.08 0.00 45.55 3.46
1499 1530 8.777865 TCCATATATCACTATGCTTAGCAAAC 57.222 34.615 12.08 0.00 43.62 2.93
1566 1597 7.334090 TCTCAGACTATGCTTAGCAATTTCTT 58.666 34.615 12.08 0.00 43.62 2.52
1644 1780 8.708742 GCATACCACAAAATTAGGAAAGAAAAC 58.291 33.333 0.00 0.00 0.00 2.43
1689 1827 8.940952 GTCTGAAATGAACTTTTGAGTAGCTAT 58.059 33.333 0.00 0.00 0.00 2.97
1716 1854 0.033504 TGAAGGGAGTCACTTGCGAC 59.966 55.000 13.67 0.00 36.08 5.19
1836 1977 5.981088 AGTGCAATATCAAATTGGTGTGA 57.019 34.783 0.00 0.00 0.00 3.58
2163 2335 6.041409 TGTGGGCTTCAAACATGAGAAATAAA 59.959 34.615 0.00 0.00 0.00 1.40
2383 2583 8.514330 TTGGTCAGTTTGTTAGTATGAACTTT 57.486 30.769 0.00 0.00 37.15 2.66
2587 2817 7.972277 GTGGTTCGTTCTTTCTACATATACAGA 59.028 37.037 0.00 0.00 0.00 3.41
2594 2824 4.699637 TGTGTGGTTCGTTCTTTCTACAT 58.300 39.130 0.00 0.00 0.00 2.29
2602 2832 2.365617 AGATGTCTGTGTGGTTCGTTCT 59.634 45.455 0.00 0.00 0.00 3.01
2937 3373 3.603158 ATAATGGTTTGGCGGGTTTTC 57.397 42.857 0.00 0.00 0.00 2.29
3011 3985 8.289618 GCGAATATATGCTTGTAGAAAATTGGA 58.710 33.333 0.00 0.00 0.00 3.53
3013 3987 8.075574 TGGCGAATATATGCTTGTAGAAAATTG 58.924 33.333 0.00 0.00 0.00 2.32
3014 3988 8.165239 TGGCGAATATATGCTTGTAGAAAATT 57.835 30.769 0.00 0.00 0.00 1.82
3019 3993 6.288294 ACTTTGGCGAATATATGCTTGTAGA 58.712 36.000 0.00 0.00 0.00 2.59
3147 4152 3.139397 TGTGAGGTTTGGGTTGAAGGTAT 59.861 43.478 0.00 0.00 0.00 2.73
3181 4186 0.392595 CTTGAGCAGGCATGAGCAGA 60.393 55.000 0.62 0.00 44.61 4.26
3184 4189 0.663688 CATCTTGAGCAGGCATGAGC 59.336 55.000 0.62 0.00 41.10 4.26
3192 4197 4.763073 TCCATGTCTAACATCTTGAGCAG 58.237 43.478 0.00 0.00 36.53 4.24
3221 4246 0.836606 TGTCTGACAAGTGGCTGGAA 59.163 50.000 8.27 0.00 0.00 3.53
3312 4339 5.126707 ACAATGAATTTCTCCAATCAGAGGC 59.873 40.000 0.00 0.00 34.46 4.70
3406 4697 7.910683 GCCGAAACAGGATAAAGATTTTAAGAG 59.089 37.037 0.00 0.00 0.00 2.85
3409 4700 7.696992 AGCCGAAACAGGATAAAGATTTTAA 57.303 32.000 0.00 0.00 0.00 1.52
3497 4826 5.424121 AGTATTTGCGAGTCATAAATGCC 57.576 39.130 10.34 3.65 30.06 4.40
3627 4967 2.441410 TGAATGCGGTGGATTTTAGCA 58.559 42.857 0.00 0.00 42.28 3.49
3852 5208 3.695830 CCTAAAGGTGTTAGGCACTCA 57.304 47.619 0.00 0.00 46.86 3.41
3882 5238 2.919043 GGAGGGATCCCGTGCAAT 59.081 61.111 25.48 6.38 41.95 3.56
4002 5358 3.165160 ATATGACGCGGACTGGGCC 62.165 63.158 12.47 0.00 0.00 5.80
4008 5364 1.006102 CCTGGGATATGACGCGGAC 60.006 63.158 12.47 4.63 0.00 4.79
4092 5450 1.352352 ACTCATGTGGAAGGGAAGGTG 59.648 52.381 0.00 0.00 0.00 4.00
4123 5481 1.227664 CCGGCACTAGAGAGAGGGA 59.772 63.158 0.00 0.00 0.00 4.20
4154 5512 3.130633 GCAGACACATGTACACAGAACA 58.869 45.455 0.00 0.00 0.00 3.18
4169 6523 5.247110 AGGTCAATTAAGAGAGAAGCAGACA 59.753 40.000 0.00 0.00 0.00 3.41
4196 6550 2.277084 GAACAACACTGAAGACGTGGT 58.723 47.619 0.00 0.00 36.71 4.16
4231 6585 0.613853 TCGGGGAAGACATCGGAAGT 60.614 55.000 0.00 0.00 0.00 3.01
4249 6603 5.519722 ACACTTCATCACGGAAAATTTGTC 58.480 37.500 0.00 0.00 0.00 3.18
4268 6622 1.330655 ATCGCCGGATCTGGAACACT 61.331 55.000 25.54 0.28 0.00 3.55
4308 6662 2.260869 TTGCTGCTCTGGCGAAACC 61.261 57.895 0.00 0.00 42.25 3.27
4325 6679 4.878439 TCGTTGTAGTCTACTGCATTGTT 58.122 39.130 11.28 0.00 38.35 2.83
4348 6702 2.126071 CCGTCGCCATGTTCGAGT 60.126 61.111 7.44 0.00 36.56 4.18
4371 6725 1.091771 ATCTCCAACAAGATGGCGCG 61.092 55.000 0.00 0.00 40.46 6.86
4422 6776 2.594303 CGCCCTCAACAACTGGCA 60.594 61.111 0.00 0.00 44.22 4.92
4424 6778 2.328099 GCTCGCCCTCAACAACTGG 61.328 63.158 0.00 0.00 0.00 4.00
4437 6791 3.984193 ATGAACTGGGGCAGCTCGC 62.984 63.158 0.00 0.00 41.28 5.03
4490 6844 3.944015 ACTCCGTACTACAGCGAATACTT 59.056 43.478 0.00 0.00 0.00 2.24
4501 6855 2.486370 GGAGACCCCTACTCCGTACTAC 60.486 59.091 0.00 0.00 43.25 2.73
4536 6890 3.397482 GAAGATCCATTCCCTGTCATCG 58.603 50.000 0.00 0.00 0.00 3.84
4560 6914 1.368374 CCTAGGGGGAGAAAACCACA 58.632 55.000 0.00 0.00 37.23 4.17
4657 7012 2.457366 AACTCTAGGCTTGGTCGTTG 57.543 50.000 0.00 0.00 0.00 4.10
4767 7124 0.733150 GGCTGTCCGCAAAATACTCC 59.267 55.000 0.00 0.00 41.67 3.85
4821 7178 5.365605 TGGTACGGGAAGTGATTGATTCTAT 59.634 40.000 0.00 0.00 0.00 1.98
4846 7206 4.705023 ACATAAAGTTGTAAGGGCATGTCC 59.295 41.667 8.79 8.79 0.00 4.02
4879 7239 3.067106 CTGGTCCATAATACACGATGGC 58.933 50.000 0.00 0.00 42.13 4.40
4881 7241 3.727726 TGCTGGTCCATAATACACGATG 58.272 45.455 0.00 0.00 0.00 3.84
4882 7242 3.388024 ACTGCTGGTCCATAATACACGAT 59.612 43.478 0.00 0.00 0.00 3.73
4884 7244 2.866156 CACTGCTGGTCCATAATACACG 59.134 50.000 0.00 0.00 0.00 4.49
4885 7245 3.623060 CACACTGCTGGTCCATAATACAC 59.377 47.826 0.00 0.00 0.00 2.90
4951 7378 1.507140 AGGTGGTGACTTGGAGAACA 58.493 50.000 0.00 0.00 0.00 3.18
4967 7394 6.152932 GATGCAATCAAATCCAACATAGGT 57.847 37.500 0.00 0.00 44.70 3.08
5005 7432 5.242615 TGCTACACAAAGCCAATTTCATGTA 59.757 36.000 0.00 0.00 42.05 2.29
5100 7565 6.128090 TGTTCTTGCAATTAGATGCTGAAGAG 60.128 38.462 0.00 0.00 46.54 2.85
5120 7634 8.796475 ACAGTATGCAATTTTGACTTATGTTCT 58.204 29.630 0.00 0.00 42.53 3.01
5193 7708 2.499197 TGCTTTTCATGGAGCGTTGTA 58.501 42.857 10.56 0.00 41.75 2.41
5205 7720 8.881743 GTTGCCATATTTTATTGATGCTTTTCA 58.118 29.630 0.00 0.00 0.00 2.69
5216 7731 7.818930 CCTTTCAGTGTGTTGCCATATTTTATT 59.181 33.333 0.00 0.00 0.00 1.40
5297 7893 2.509131 TCATGGCAATATGGAGGTGACA 59.491 45.455 0.00 0.00 34.03 3.58
5298 7894 2.880890 GTCATGGCAATATGGAGGTGAC 59.119 50.000 0.00 0.00 0.00 3.67
5299 7895 2.509131 TGTCATGGCAATATGGAGGTGA 59.491 45.455 0.00 0.00 0.00 4.02
5300 7896 2.934887 TGTCATGGCAATATGGAGGTG 58.065 47.619 0.00 0.00 0.00 4.00
5331 7933 4.268884 ACGCACGCAATTTGTTTTACAATT 59.731 33.333 0.00 0.00 38.00 2.32
5490 8220 5.806286 ACAAACTGACAAATCAAGTGTACG 58.194 37.500 0.00 0.00 33.30 3.67
5495 8226 6.545666 TGTATGGACAAACTGACAAATCAAGT 59.454 34.615 0.00 0.00 30.25 3.16
5500 8231 6.707440 TGTTGTATGGACAAACTGACAAAT 57.293 33.333 0.00 0.00 46.99 2.32
5669 8404 5.010719 AGCTGCACTGAAAACACTAGTACTA 59.989 40.000 1.02 1.89 0.00 1.82
5671 8406 4.058817 AGCTGCACTGAAAACACTAGTAC 58.941 43.478 1.02 0.00 0.00 2.73
5672 8407 4.336889 AGCTGCACTGAAAACACTAGTA 57.663 40.909 1.02 0.00 0.00 1.82
5673 8408 3.199880 AGCTGCACTGAAAACACTAGT 57.800 42.857 1.02 0.00 0.00 2.57
5739 8474 7.115378 GCTTTGTAATAATGCATGATAGTTGGC 59.885 37.037 0.00 0.00 0.00 4.52
5767 8502 6.293955 GGCGTGACCAGCATATAAAATATGTT 60.294 38.462 8.32 0.63 38.86 2.71
5773 8508 2.294074 GGGCGTGACCAGCATATAAAA 58.706 47.619 0.00 0.00 42.05 1.52
5790 8525 3.603158 AATTGTAAATGAAACCGGGGC 57.397 42.857 6.32 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.