Multiple sequence alignment - TraesCS5A01G217700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G217700 chr5A 100.000 2648 0 0 1 2648 435708791 435711438 0.000000e+00 4891.0
1 TraesCS5A01G217700 chr2A 99.702 1678 5 0 1 1678 607491905 607490228 0.000000e+00 3072.0
2 TraesCS5A01G217700 chr2A 78.891 559 98 17 1734 2280 47306989 47306439 6.970000e-96 361.0
3 TraesCS5A01G217700 chr3A 99.464 1678 9 0 1 1678 121400817 121402494 0.000000e+00 3049.0
4 TraesCS5A01G217700 chr3A 81.429 490 77 14 1741 2221 301058076 301058560 3.200000e-104 388.0
5 TraesCS5A01G217700 chr1B 99.464 1678 9 0 1 1678 676772110 676770433 0.000000e+00 3049.0
6 TraesCS5A01G217700 chr3D 97.264 1681 41 2 1 1680 33195260 33193584 0.000000e+00 2844.0
7 TraesCS5A01G217700 chr3D 91.667 312 22 4 2 313 548596182 548596489 1.880000e-116 429.0
8 TraesCS5A01G217700 chr7D 96.010 1679 67 0 1 1679 634673357 634675035 0.000000e+00 2730.0
9 TraesCS5A01G217700 chr7D 84.615 65 10 0 56 120 535772958 535773022 6.120000e-07 65.8
10 TraesCS5A01G217700 chr4B 99.458 1476 8 0 203 1678 672924358 672925833 0.000000e+00 2682.0
11 TraesCS5A01G217700 chr2B 98.854 1483 17 0 196 1678 168631054 168632536 0.000000e+00 2645.0
12 TraesCS5A01G217700 chr7A 99.449 1453 8 0 226 1678 38119435 38120887 0.000000e+00 2639.0
13 TraesCS5A01G217700 chr6B 99.150 1294 10 1 392 1684 195303 194010 0.000000e+00 2327.0
14 TraesCS5A01G217700 chr4D 78.605 631 105 24 1676 2286 309534733 309535353 8.890000e-105 390.0
15 TraesCS5A01G217700 chr3B 89.677 310 20 3 2 311 727407881 727408178 4.130000e-103 385.0
16 TraesCS5A01G217700 chr3B 78.804 552 103 14 1743 2285 126565322 126564776 2.510000e-95 359.0
17 TraesCS5A01G217700 chr5D 78.323 632 104 24 1676 2286 198398002 198397383 6.920000e-101 377.0
18 TraesCS5A01G217700 chr2D 78.788 594 100 20 1708 2285 390321464 390320881 2.490000e-100 375.0
19 TraesCS5A01G217700 chr6D 78.025 628 114 18 1676 2286 282827332 282826712 8.950000e-100 374.0
20 TraesCS5A01G217700 chr6D 95.238 42 2 0 1 42 308943363 308943322 1.700000e-07 67.6
21 TraesCS5A01G217700 chr6A 78.392 597 105 18 1706 2284 332842702 332843292 1.500000e-97 366.0
22 TraesCS5A01G217700 chr7B 78.739 555 101 16 1733 2279 725405090 725405635 3.240000e-94 355.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G217700 chr5A 435708791 435711438 2647 False 4891 4891 100.000 1 2648 1 chr5A.!!$F1 2647
1 TraesCS5A01G217700 chr2A 607490228 607491905 1677 True 3072 3072 99.702 1 1678 1 chr2A.!!$R2 1677
2 TraesCS5A01G217700 chr2A 47306439 47306989 550 True 361 361 78.891 1734 2280 1 chr2A.!!$R1 546
3 TraesCS5A01G217700 chr3A 121400817 121402494 1677 False 3049 3049 99.464 1 1678 1 chr3A.!!$F1 1677
4 TraesCS5A01G217700 chr1B 676770433 676772110 1677 True 3049 3049 99.464 1 1678 1 chr1B.!!$R1 1677
5 TraesCS5A01G217700 chr3D 33193584 33195260 1676 True 2844 2844 97.264 1 1680 1 chr3D.!!$R1 1679
6 TraesCS5A01G217700 chr7D 634673357 634675035 1678 False 2730 2730 96.010 1 1679 1 chr7D.!!$F2 1678
7 TraesCS5A01G217700 chr4B 672924358 672925833 1475 False 2682 2682 99.458 203 1678 1 chr4B.!!$F1 1475
8 TraesCS5A01G217700 chr2B 168631054 168632536 1482 False 2645 2645 98.854 196 1678 1 chr2B.!!$F1 1482
9 TraesCS5A01G217700 chr7A 38119435 38120887 1452 False 2639 2639 99.449 226 1678 1 chr7A.!!$F1 1452
10 TraesCS5A01G217700 chr6B 194010 195303 1293 True 2327 2327 99.150 392 1684 1 chr6B.!!$R1 1292
11 TraesCS5A01G217700 chr4D 309534733 309535353 620 False 390 390 78.605 1676 2286 1 chr4D.!!$F1 610
12 TraesCS5A01G217700 chr3B 126564776 126565322 546 True 359 359 78.804 1743 2285 1 chr3B.!!$R1 542
13 TraesCS5A01G217700 chr5D 198397383 198398002 619 True 377 377 78.323 1676 2286 1 chr5D.!!$R1 610
14 TraesCS5A01G217700 chr2D 390320881 390321464 583 True 375 375 78.788 1708 2285 1 chr2D.!!$R1 577
15 TraesCS5A01G217700 chr6D 282826712 282827332 620 True 374 374 78.025 1676 2286 1 chr6D.!!$R1 610
16 TraesCS5A01G217700 chr6A 332842702 332843292 590 False 366 366 78.392 1706 2284 1 chr6A.!!$F1 578
17 TraesCS5A01G217700 chr7B 725405090 725405635 545 False 355 355 78.739 1733 2279 1 chr7B.!!$F1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 354 2.565391 TCAAACCTATCACGCTTCAGGA 59.435 45.455 1.15 0.0 32.25 3.86 F
581 582 4.331992 CGATGAAGCTCACAGAATGAATGT 59.668 41.667 0.00 0.0 39.69 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1238 1239 0.035317 TTTGTCATCTCGCAGCACCT 59.965 50.000 0.00 0.00 0.0 4.00 R
2580 2610 1.408702 ACCGGTACAAACTACACGTGT 59.591 47.619 26.52 26.52 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
353 354 2.565391 TCAAACCTATCACGCTTCAGGA 59.435 45.455 1.15 0.00 32.25 3.86
581 582 4.331992 CGATGAAGCTCACAGAATGAATGT 59.668 41.667 0.00 0.00 39.69 2.71
874 875 7.282585 TGACTTGGCTGCTATTAGAAATACAT 58.717 34.615 0.00 0.00 0.00 2.29
1776 1787 9.918630 AATCATACTTTGGACTTCATTTTCAAG 57.081 29.630 0.00 0.00 0.00 3.02
1800 1811 5.343325 GCGGTTTGTCAGAATTGAGAAAATC 59.657 40.000 2.04 0.00 44.93 2.17
1828 1839 4.546570 GCGTTGGAAAGCTAGTGAAAATT 58.453 39.130 0.00 0.00 0.00 1.82
1892 1903 8.853469 ATGGTTTAAACGTATTTGAAAAACGA 57.147 26.923 12.07 0.00 39.80 3.85
1893 1904 8.853469 TGGTTTAAACGTATTTGAAAAACGAT 57.147 26.923 12.07 3.85 39.80 3.73
1894 1905 8.744011 TGGTTTAAACGTATTTGAAAAACGATG 58.256 29.630 12.07 0.00 39.80 3.84
1901 1914 9.458374 AACGTATTTGAAAAACGATGAAATCTT 57.542 25.926 13.51 0.00 42.58 2.40
1909 1922 4.497473 AACGATGAAATCTTGGCGAAAA 57.503 36.364 0.00 0.00 42.58 2.29
1914 1927 6.537301 ACGATGAAATCTTGGCGAAAAGTATA 59.463 34.615 0.00 0.00 42.58 1.47
1983 1998 4.398044 ACGGCGTTGAAAAGATATGGAAAT 59.602 37.500 6.77 0.00 0.00 2.17
1984 1999 4.734854 CGGCGTTGAAAAGATATGGAAATG 59.265 41.667 0.00 0.00 0.00 2.32
1985 2000 4.504097 GGCGTTGAAAAGATATGGAAATGC 59.496 41.667 0.00 0.00 0.00 3.56
1986 2001 5.101628 GCGTTGAAAAGATATGGAAATGCA 58.898 37.500 0.00 0.00 0.00 3.96
1990 2006 8.164153 CGTTGAAAAGATATGGAAATGCAAAAG 58.836 33.333 0.00 0.00 0.00 2.27
2103 2129 3.136260 AGTGTGTTGAAATGGGGCAAATT 59.864 39.130 0.00 0.00 0.00 1.82
2122 2148 8.082242 GGCAAATTATATATCGTTGGAAAGCTT 58.918 33.333 0.00 0.00 0.00 3.74
2123 2149 8.905702 GCAAATTATATATCGTTGGAAAGCTTG 58.094 33.333 0.00 0.00 0.00 4.01
2152 2179 6.586868 TGCAAAACTTTGTCATGTTGAATC 57.413 33.333 4.23 0.00 40.24 2.52
2153 2180 5.231779 TGCAAAACTTTGTCATGTTGAATCG 59.768 36.000 4.23 0.00 40.24 3.34
2157 2184 8.802856 CAAAACTTTGTCATGTTGAATCGTTTA 58.197 29.630 0.00 0.00 33.59 2.01
2161 2188 5.856126 TGTCATGTTGAATCGTTTACTCC 57.144 39.130 0.00 0.00 0.00 3.85
2167 2194 6.249035 TGTTGAATCGTTTACTCCAATTCC 57.751 37.500 0.00 0.00 0.00 3.01
2170 2197 7.040062 TGTTGAATCGTTTACTCCAATTCCAAT 60.040 33.333 0.00 0.00 0.00 3.16
2171 2198 8.455682 GTTGAATCGTTTACTCCAATTCCAATA 58.544 33.333 0.00 0.00 0.00 1.90
2172 2199 8.746052 TGAATCGTTTACTCCAATTCCAATAT 57.254 30.769 0.00 0.00 0.00 1.28
2205 2232 7.642669 AGTAATTTGAAATATGATGTGAGCGG 58.357 34.615 0.00 0.00 0.00 5.52
2213 2240 0.599060 TGATGTGAGCGGTCGTGTTA 59.401 50.000 10.46 0.00 0.00 2.41
2225 2253 2.159801 GGTCGTGTTATTTTTCGGGTCG 60.160 50.000 0.00 0.00 0.00 4.79
2226 2254 2.476241 GTCGTGTTATTTTTCGGGTCGT 59.524 45.455 0.00 0.00 0.00 4.34
2227 2255 2.475864 TCGTGTTATTTTTCGGGTCGTG 59.524 45.455 0.00 0.00 0.00 4.35
2238 2266 2.358015 TCGGGTCGTGAAAACAAAGTT 58.642 42.857 0.00 0.00 0.00 2.66
2239 2267 2.748532 TCGGGTCGTGAAAACAAAGTTT 59.251 40.909 0.00 0.00 0.00 2.66
2243 2272 4.924462 GGGTCGTGAAAACAAAGTTTTTGA 59.076 37.500 9.00 5.82 0.00 2.69
2249 2278 8.907685 TCGTGAAAACAAAGTTTTTGAACTAAG 58.092 29.630 9.00 0.00 31.72 2.18
2251 2280 7.682460 GTGAAAACAAAGTTTTTGAACTAAGCG 59.318 33.333 9.00 0.00 31.72 4.68
2255 2285 5.575218 ACAAAGTTTTTGAACTAAGCGTTGG 59.425 36.000 8.41 0.00 35.56 3.77
2286 2316 7.724305 TTGTACTGAGGTATTTTTCACAGTC 57.276 36.000 0.00 0.00 38.99 3.51
2287 2317 5.924254 TGTACTGAGGTATTTTTCACAGTCG 59.076 40.000 0.00 0.00 38.99 4.18
2288 2318 4.315803 ACTGAGGTATTTTTCACAGTCGG 58.684 43.478 0.00 0.00 34.21 4.79
2289 2319 4.039973 ACTGAGGTATTTTTCACAGTCGGA 59.960 41.667 0.00 0.00 34.21 4.55
2290 2320 4.963373 TGAGGTATTTTTCACAGTCGGAA 58.037 39.130 0.00 0.00 0.00 4.30
2291 2321 4.753107 TGAGGTATTTTTCACAGTCGGAAC 59.247 41.667 0.00 0.00 0.00 3.62
2292 2322 4.969484 AGGTATTTTTCACAGTCGGAACT 58.031 39.130 0.00 0.00 35.60 3.01
2293 2323 5.374071 AGGTATTTTTCACAGTCGGAACTT 58.626 37.500 0.00 0.00 31.71 2.66
2294 2324 6.527423 AGGTATTTTTCACAGTCGGAACTTA 58.473 36.000 0.00 0.00 31.71 2.24
2295 2325 6.426025 AGGTATTTTTCACAGTCGGAACTTAC 59.574 38.462 0.00 0.00 31.71 2.34
2296 2326 6.426025 GGTATTTTTCACAGTCGGAACTTACT 59.574 38.462 0.00 0.00 31.71 2.24
2297 2327 5.978934 TTTTTCACAGTCGGAACTTACTC 57.021 39.130 0.00 0.00 31.71 2.59
2298 2328 4.931661 TTTCACAGTCGGAACTTACTCT 57.068 40.909 0.00 0.00 31.71 3.24
2299 2329 6.395426 TTTTCACAGTCGGAACTTACTCTA 57.605 37.500 0.00 0.00 31.71 2.43
2300 2330 5.368256 TTCACAGTCGGAACTTACTCTAC 57.632 43.478 0.00 0.00 31.71 2.59
2301 2331 4.649692 TCACAGTCGGAACTTACTCTACT 58.350 43.478 0.00 0.00 31.71 2.57
2302 2332 5.068636 TCACAGTCGGAACTTACTCTACTT 58.931 41.667 0.00 0.00 31.71 2.24
2303 2333 5.533903 TCACAGTCGGAACTTACTCTACTTT 59.466 40.000 0.00 0.00 31.71 2.66
2304 2334 6.040166 TCACAGTCGGAACTTACTCTACTTTT 59.960 38.462 0.00 0.00 31.71 2.27
2305 2335 6.362820 CACAGTCGGAACTTACTCTACTTTTC 59.637 42.308 0.00 0.00 31.71 2.29
2306 2336 6.264970 ACAGTCGGAACTTACTCTACTTTTCT 59.735 38.462 0.00 0.00 31.71 2.52
2307 2337 7.446625 ACAGTCGGAACTTACTCTACTTTTCTA 59.553 37.037 0.00 0.00 31.71 2.10
2308 2338 8.460428 CAGTCGGAACTTACTCTACTTTTCTAT 58.540 37.037 0.00 0.00 31.71 1.98
2309 2339 9.022884 AGTCGGAACTTACTCTACTTTTCTATT 57.977 33.333 0.00 0.00 28.74 1.73
2331 2361 9.394477 CTATTACTGTTTTCCTTACAACTTTGC 57.606 33.333 0.00 0.00 0.00 3.68
2332 2362 5.652994 ACTGTTTTCCTTACAACTTTGCA 57.347 34.783 0.00 0.00 0.00 4.08
2333 2363 6.031751 ACTGTTTTCCTTACAACTTTGCAA 57.968 33.333 0.00 0.00 0.00 4.08
2334 2364 5.867174 ACTGTTTTCCTTACAACTTTGCAAC 59.133 36.000 0.00 0.00 0.00 4.17
2335 2365 5.784177 TGTTTTCCTTACAACTTTGCAACA 58.216 33.333 0.00 0.00 0.00 3.33
2336 2366 5.866633 TGTTTTCCTTACAACTTTGCAACAG 59.133 36.000 0.00 2.74 0.00 3.16
2337 2367 5.652994 TTTCCTTACAACTTTGCAACAGT 57.347 34.783 0.00 3.44 0.00 3.55
2338 2368 5.652994 TTCCTTACAACTTTGCAACAGTT 57.347 34.783 16.38 16.38 34.67 3.16
2339 2369 5.652994 TCCTTACAACTTTGCAACAGTTT 57.347 34.783 18.37 13.96 31.83 2.66
2340 2370 6.031751 TCCTTACAACTTTGCAACAGTTTT 57.968 33.333 18.37 15.92 31.83 2.43
2341 2371 6.459923 TCCTTACAACTTTGCAACAGTTTTT 58.540 32.000 18.37 13.20 31.83 1.94
2342 2372 6.588373 TCCTTACAACTTTGCAACAGTTTTTC 59.412 34.615 18.37 0.00 31.83 2.29
2343 2373 6.367422 CCTTACAACTTTGCAACAGTTTTTCA 59.633 34.615 18.37 7.56 31.83 2.69
2344 2374 5.844301 ACAACTTTGCAACAGTTTTTCAG 57.156 34.783 18.37 12.26 31.83 3.02
2345 2375 5.537188 ACAACTTTGCAACAGTTTTTCAGA 58.463 33.333 18.37 0.00 31.83 3.27
2346 2376 5.988561 ACAACTTTGCAACAGTTTTTCAGAA 59.011 32.000 18.37 0.00 31.83 3.02
2347 2377 6.650390 ACAACTTTGCAACAGTTTTTCAGAAT 59.350 30.769 18.37 0.20 31.83 2.40
2348 2378 7.173047 ACAACTTTGCAACAGTTTTTCAGAATT 59.827 29.630 18.37 0.00 31.83 2.17
2349 2379 7.064060 ACTTTGCAACAGTTTTTCAGAATTG 57.936 32.000 0.00 0.00 0.00 2.32
2350 2380 6.873076 ACTTTGCAACAGTTTTTCAGAATTGA 59.127 30.769 0.00 0.00 0.00 2.57
2351 2381 6.890663 TTGCAACAGTTTTTCAGAATTGAG 57.109 33.333 0.00 0.00 34.15 3.02
2352 2382 5.964758 TGCAACAGTTTTTCAGAATTGAGT 58.035 33.333 0.00 0.00 34.15 3.41
2353 2383 7.094508 TGCAACAGTTTTTCAGAATTGAGTA 57.905 32.000 0.00 0.00 34.15 2.59
2354 2384 7.542890 TGCAACAGTTTTTCAGAATTGAGTAA 58.457 30.769 0.00 0.00 34.15 2.24
2355 2385 8.031864 TGCAACAGTTTTTCAGAATTGAGTAAA 58.968 29.630 0.00 0.00 34.15 2.01
2356 2386 9.034544 GCAACAGTTTTTCAGAATTGAGTAAAT 57.965 29.630 0.00 0.00 34.15 1.40
2374 2404 9.037737 TGAGTAAATAGTATACCGTTGAAATGC 57.962 33.333 0.00 0.00 0.00 3.56
2375 2405 9.257651 GAGTAAATAGTATACCGTTGAAATGCT 57.742 33.333 0.00 0.00 0.00 3.79
2380 2410 9.772973 AATAGTATACCGTTGAAATGCTATTGA 57.227 29.630 0.00 0.00 37.23 2.57
2381 2411 7.478520 AGTATACCGTTGAAATGCTATTGAC 57.521 36.000 0.00 0.00 0.00 3.18
2382 2412 7.045416 AGTATACCGTTGAAATGCTATTGACA 58.955 34.615 0.00 0.00 0.00 3.58
2383 2413 6.751514 ATACCGTTGAAATGCTATTGACAA 57.248 33.333 0.00 0.00 0.00 3.18
2384 2414 5.046910 ACCGTTGAAATGCTATTGACAAG 57.953 39.130 0.00 0.00 0.00 3.16
2385 2415 4.082787 ACCGTTGAAATGCTATTGACAAGG 60.083 41.667 0.00 0.00 0.00 3.61
2386 2416 4.414852 CGTTGAAATGCTATTGACAAGGG 58.585 43.478 0.00 0.00 0.00 3.95
2387 2417 4.675146 CGTTGAAATGCTATTGACAAGGGG 60.675 45.833 0.00 0.00 0.00 4.79
2388 2418 4.314522 TGAAATGCTATTGACAAGGGGA 57.685 40.909 0.00 0.00 0.00 4.81
2389 2419 4.671831 TGAAATGCTATTGACAAGGGGAA 58.328 39.130 0.00 0.00 0.00 3.97
2390 2420 5.083122 TGAAATGCTATTGACAAGGGGAAA 58.917 37.500 0.00 0.00 0.00 3.13
2391 2421 5.047377 TGAAATGCTATTGACAAGGGGAAAC 60.047 40.000 0.00 0.00 0.00 2.78
2392 2422 3.806949 TGCTATTGACAAGGGGAAACT 57.193 42.857 0.00 0.00 0.00 2.66
2393 2423 4.112634 TGCTATTGACAAGGGGAAACTT 57.887 40.909 0.00 0.00 0.00 2.66
2394 2424 4.479158 TGCTATTGACAAGGGGAAACTTT 58.521 39.130 0.00 0.00 0.00 2.66
2395 2425 4.898861 TGCTATTGACAAGGGGAAACTTTT 59.101 37.500 0.00 0.00 0.00 2.27
2396 2426 5.365314 TGCTATTGACAAGGGGAAACTTTTT 59.635 36.000 0.00 0.00 0.00 1.94
2397 2427 5.926542 GCTATTGACAAGGGGAAACTTTTTC 59.073 40.000 0.00 0.00 0.00 2.29
2398 2428 5.948742 ATTGACAAGGGGAAACTTTTTCA 57.051 34.783 0.00 0.00 0.00 2.69
2399 2429 5.948742 TTGACAAGGGGAAACTTTTTCAT 57.051 34.783 1.34 0.00 0.00 2.57
2400 2430 5.275067 TGACAAGGGGAAACTTTTTCATG 57.725 39.130 1.34 0.00 0.00 3.07
2401 2431 4.714308 TGACAAGGGGAAACTTTTTCATGT 59.286 37.500 0.00 1.13 0.00 3.21
2402 2432 5.188751 TGACAAGGGGAAACTTTTTCATGTT 59.811 36.000 0.00 0.00 0.00 2.71
2403 2433 5.427378 ACAAGGGGAAACTTTTTCATGTTG 58.573 37.500 0.00 3.73 0.00 3.33
2404 2434 5.188751 ACAAGGGGAAACTTTTTCATGTTGA 59.811 36.000 0.00 0.00 0.00 3.18
2405 2435 5.948742 AGGGGAAACTTTTTCATGTTGAA 57.051 34.783 0.00 0.00 34.03 2.69
2406 2436 5.670485 AGGGGAAACTTTTTCATGTTGAAC 58.330 37.500 0.00 0.00 35.89 3.18
2407 2437 5.188751 AGGGGAAACTTTTTCATGTTGAACA 59.811 36.000 0.00 0.00 35.89 3.18
2408 2438 6.054941 GGGGAAACTTTTTCATGTTGAACAT 58.945 36.000 4.72 4.72 39.91 2.71
2409 2439 6.542005 GGGGAAACTTTTTCATGTTGAACATT 59.458 34.615 8.30 0.00 36.53 2.71
2410 2440 7.066887 GGGGAAACTTTTTCATGTTGAACATTT 59.933 33.333 8.30 0.00 36.53 2.32
2411 2441 8.458052 GGGAAACTTTTTCATGTTGAACATTTT 58.542 29.630 8.30 4.93 36.53 1.82
2412 2442 9.838975 GGAAACTTTTTCATGTTGAACATTTTT 57.161 25.926 8.30 0.41 36.53 1.94
2414 2444 8.672214 AACTTTTTCATGTTGAACATTTTTGC 57.328 26.923 8.30 0.00 36.53 3.68
2415 2445 7.814642 ACTTTTTCATGTTGAACATTTTTGCA 58.185 26.923 8.30 0.00 36.53 4.08
2416 2446 8.295288 ACTTTTTCATGTTGAACATTTTTGCAA 58.705 25.926 8.30 0.00 36.53 4.08
2417 2447 9.125906 CTTTTTCATGTTGAACATTTTTGCAAA 57.874 25.926 8.30 8.05 36.53 3.68
2418 2448 9.635520 TTTTTCATGTTGAACATTTTTGCAAAT 57.364 22.222 13.65 0.00 36.53 2.32
2419 2449 9.635520 TTTTCATGTTGAACATTTTTGCAAATT 57.364 22.222 13.65 3.89 36.53 1.82
2420 2450 9.635520 TTTCATGTTGAACATTTTTGCAAATTT 57.364 22.222 13.65 4.24 36.53 1.82
2422 2452 9.713740 TCATGTTGAACATTTTTGCAAATTTAC 57.286 25.926 13.65 7.41 36.53 2.01
2423 2453 8.956014 CATGTTGAACATTTTTGCAAATTTACC 58.044 29.630 13.65 2.25 36.53 2.85
2424 2454 8.044060 TGTTGAACATTTTTGCAAATTTACCA 57.956 26.923 13.65 4.82 29.41 3.25
2425 2455 8.680903 TGTTGAACATTTTTGCAAATTTACCAT 58.319 25.926 13.65 0.00 29.41 3.55
2426 2456 8.956014 GTTGAACATTTTTGCAAATTTACCATG 58.044 29.630 13.65 10.59 29.41 3.66
2427 2457 7.646314 TGAACATTTTTGCAAATTTACCATGG 58.354 30.769 13.65 11.19 29.41 3.66
2428 2458 7.284034 TGAACATTTTTGCAAATTTACCATGGT 59.716 29.630 23.55 23.55 29.41 3.55
2429 2459 7.579761 ACATTTTTGCAAATTTACCATGGTT 57.420 28.000 25.38 1.14 29.41 3.67
2430 2460 8.005192 ACATTTTTGCAAATTTACCATGGTTT 57.995 26.923 25.38 8.81 29.41 3.27
2431 2461 9.125026 ACATTTTTGCAAATTTACCATGGTTTA 57.875 25.926 25.38 12.02 29.41 2.01
2432 2462 9.956720 CATTTTTGCAAATTTACCATGGTTTAA 57.043 25.926 25.38 17.84 29.41 1.52
2434 2464 8.964476 TTTTGCAAATTTACCATGGTTTAAGA 57.036 26.923 25.38 0.21 0.00 2.10
2435 2465 8.600449 TTTGCAAATTTACCATGGTTTAAGAG 57.400 30.769 25.38 10.91 0.00 2.85
2436 2466 6.162777 TGCAAATTTACCATGGTTTAAGAGC 58.837 36.000 25.38 20.12 0.00 4.09
2437 2467 6.162777 GCAAATTTACCATGGTTTAAGAGCA 58.837 36.000 25.38 0.00 40.58 4.26
2438 2468 6.311200 GCAAATTTACCATGGTTTAAGAGCAG 59.689 38.462 25.38 6.58 39.48 4.24
2439 2469 6.530019 AATTTACCATGGTTTAAGAGCAGG 57.470 37.500 25.38 0.00 39.48 4.85
2440 2470 4.650972 TTACCATGGTTTAAGAGCAGGT 57.349 40.909 25.38 0.00 39.48 4.00
2441 2471 3.525800 ACCATGGTTTAAGAGCAGGTT 57.474 42.857 13.00 0.00 39.48 3.50
2442 2472 3.844640 ACCATGGTTTAAGAGCAGGTTT 58.155 40.909 13.00 0.00 39.48 3.27
2443 2473 3.573967 ACCATGGTTTAAGAGCAGGTTTG 59.426 43.478 13.00 0.00 39.48 2.93
2444 2474 3.826157 CCATGGTTTAAGAGCAGGTTTGA 59.174 43.478 2.57 0.00 39.48 2.69
2445 2475 4.280677 CCATGGTTTAAGAGCAGGTTTGAA 59.719 41.667 2.57 0.00 39.48 2.69
2446 2476 5.047092 CCATGGTTTAAGAGCAGGTTTGAAT 60.047 40.000 2.57 0.00 39.48 2.57
2447 2477 6.458210 CATGGTTTAAGAGCAGGTTTGAATT 58.542 36.000 0.00 0.00 39.48 2.17
2448 2478 6.084326 TGGTTTAAGAGCAGGTTTGAATTC 57.916 37.500 0.00 0.00 0.00 2.17
2449 2479 5.154222 GGTTTAAGAGCAGGTTTGAATTCG 58.846 41.667 0.04 0.00 0.00 3.34
2450 2480 5.154222 GTTTAAGAGCAGGTTTGAATTCGG 58.846 41.667 0.04 0.00 0.00 4.30
2451 2481 2.568623 AGAGCAGGTTTGAATTCGGT 57.431 45.000 0.04 0.00 0.00 4.69
2452 2482 2.154462 AGAGCAGGTTTGAATTCGGTG 58.846 47.619 0.04 0.00 0.00 4.94
2453 2483 2.151202 GAGCAGGTTTGAATTCGGTGA 58.849 47.619 0.04 0.00 0.00 4.02
2454 2484 2.552315 GAGCAGGTTTGAATTCGGTGAA 59.448 45.455 0.04 0.00 0.00 3.18
2455 2485 2.955660 AGCAGGTTTGAATTCGGTGAAA 59.044 40.909 0.04 0.00 0.00 2.69
2456 2486 3.573967 AGCAGGTTTGAATTCGGTGAAAT 59.426 39.130 0.04 0.00 0.00 2.17
2457 2487 4.039124 AGCAGGTTTGAATTCGGTGAAATT 59.961 37.500 0.04 0.00 0.00 1.82
2458 2488 4.749598 GCAGGTTTGAATTCGGTGAAATTT 59.250 37.500 0.04 0.00 0.00 1.82
2459 2489 5.333263 GCAGGTTTGAATTCGGTGAAATTTG 60.333 40.000 0.00 1.06 0.00 2.32
2460 2490 5.752955 CAGGTTTGAATTCGGTGAAATTTGT 59.247 36.000 0.00 0.00 0.00 2.83
2461 2491 6.920758 CAGGTTTGAATTCGGTGAAATTTGTA 59.079 34.615 0.00 0.00 0.00 2.41
2462 2492 7.598493 CAGGTTTGAATTCGGTGAAATTTGTAT 59.402 33.333 0.00 0.00 0.00 2.29
2463 2493 8.147704 AGGTTTGAATTCGGTGAAATTTGTATT 58.852 29.630 0.00 0.00 0.00 1.89
2464 2494 8.220434 GGTTTGAATTCGGTGAAATTTGTATTG 58.780 33.333 0.00 0.00 0.00 1.90
2465 2495 8.973378 GTTTGAATTCGGTGAAATTTGTATTGA 58.027 29.630 0.00 0.00 0.00 2.57
2466 2496 9.534565 TTTGAATTCGGTGAAATTTGTATTGAA 57.465 25.926 0.00 0.00 0.00 2.69
2467 2497 8.514136 TGAATTCGGTGAAATTTGTATTGAAC 57.486 30.769 0.00 0.00 0.00 3.18
2468 2498 8.356657 TGAATTCGGTGAAATTTGTATTGAACT 58.643 29.630 0.00 0.00 0.00 3.01
2469 2499 9.834628 GAATTCGGTGAAATTTGTATTGAACTA 57.165 29.630 0.00 0.00 0.00 2.24
2470 2500 9.620660 AATTCGGTGAAATTTGTATTGAACTAC 57.379 29.630 0.00 0.00 0.00 2.73
2471 2501 7.731882 TCGGTGAAATTTGTATTGAACTACA 57.268 32.000 0.00 0.00 0.00 2.74
2472 2502 8.330466 TCGGTGAAATTTGTATTGAACTACAT 57.670 30.769 0.00 0.00 31.94 2.29
2473 2503 9.438228 TCGGTGAAATTTGTATTGAACTACATA 57.562 29.630 0.00 0.00 31.94 2.29
2474 2504 9.485591 CGGTGAAATTTGTATTGAACTACATAC 57.514 33.333 0.00 0.00 31.94 2.39
2492 2522 9.998106 ACTACATACATCTAACTTTTGAACTGT 57.002 29.630 0.00 0.00 0.00 3.55
2498 2528 7.630924 ACATCTAACTTTTGAACTGTTTCTCG 58.369 34.615 0.00 0.00 32.36 4.04
2499 2529 7.494625 ACATCTAACTTTTGAACTGTTTCTCGA 59.505 33.333 0.00 0.00 32.36 4.04
2500 2530 7.837202 TCTAACTTTTGAACTGTTTCTCGAA 57.163 32.000 0.00 0.00 32.36 3.71
2501 2531 8.259049 TCTAACTTTTGAACTGTTTCTCGAAA 57.741 30.769 0.00 0.00 32.36 3.46
2502 2532 8.889717 TCTAACTTTTGAACTGTTTCTCGAAAT 58.110 29.630 0.00 0.00 32.36 2.17
2503 2533 9.503427 CTAACTTTTGAACTGTTTCTCGAAATT 57.497 29.630 0.00 0.00 32.36 1.82
2504 2534 7.740519 ACTTTTGAACTGTTTCTCGAAATTG 57.259 32.000 0.00 0.00 32.36 2.32
2505 2535 7.312899 ACTTTTGAACTGTTTCTCGAAATTGT 58.687 30.769 0.00 0.00 32.36 2.71
2506 2536 8.455682 ACTTTTGAACTGTTTCTCGAAATTGTA 58.544 29.630 0.00 0.00 32.36 2.41
2507 2537 9.284594 CTTTTGAACTGTTTCTCGAAATTGTAA 57.715 29.630 0.00 0.00 32.36 2.41
2508 2538 9.627395 TTTTGAACTGTTTCTCGAAATTGTAAA 57.373 25.926 0.00 0.00 32.36 2.01
2509 2539 9.796120 TTTGAACTGTTTCTCGAAATTGTAAAT 57.204 25.926 0.00 0.00 32.36 1.40
2510 2540 8.781067 TGAACTGTTTCTCGAAATTGTAAATG 57.219 30.769 0.00 0.00 32.36 2.32
2511 2541 8.616942 TGAACTGTTTCTCGAAATTGTAAATGA 58.383 29.630 0.00 0.00 32.36 2.57
2512 2542 8.782533 AACTGTTTCTCGAAATTGTAAATGAC 57.217 30.769 0.00 0.00 32.36 3.06
2513 2543 7.925993 ACTGTTTCTCGAAATTGTAAATGACA 58.074 30.769 0.00 0.00 35.78 3.58
2514 2544 8.567948 ACTGTTTCTCGAAATTGTAAATGACAT 58.432 29.630 0.00 0.00 38.07 3.06
2515 2545 8.948853 TGTTTCTCGAAATTGTAAATGACATC 57.051 30.769 0.00 0.00 38.07 3.06
2516 2546 8.563732 TGTTTCTCGAAATTGTAAATGACATCA 58.436 29.630 0.00 0.00 38.07 3.07
2517 2547 9.559958 GTTTCTCGAAATTGTAAATGACATCAT 57.440 29.630 0.00 0.00 38.07 2.45
2569 2599 6.645700 TTTTGACTGAACATTTTGAACTGC 57.354 33.333 0.00 0.00 0.00 4.40
2570 2600 5.581126 TTGACTGAACATTTTGAACTGCT 57.419 34.783 0.00 0.00 0.00 4.24
2571 2601 5.581126 TGACTGAACATTTTGAACTGCTT 57.419 34.783 0.00 0.00 0.00 3.91
2572 2602 5.964758 TGACTGAACATTTTGAACTGCTTT 58.035 33.333 0.00 0.00 0.00 3.51
2573 2603 5.806502 TGACTGAACATTTTGAACTGCTTTG 59.193 36.000 0.00 0.00 0.00 2.77
2574 2604 5.964758 ACTGAACATTTTGAACTGCTTTGA 58.035 33.333 0.00 0.00 0.00 2.69
2575 2605 6.038356 ACTGAACATTTTGAACTGCTTTGAG 58.962 36.000 0.00 0.00 0.00 3.02
2576 2606 6.127647 ACTGAACATTTTGAACTGCTTTGAGA 60.128 34.615 0.00 0.00 0.00 3.27
2577 2607 6.808829 TGAACATTTTGAACTGCTTTGAGAT 58.191 32.000 0.00 0.00 0.00 2.75
2578 2608 6.698329 TGAACATTTTGAACTGCTTTGAGATG 59.302 34.615 0.00 0.00 0.00 2.90
2579 2609 6.395426 ACATTTTGAACTGCTTTGAGATGA 57.605 33.333 0.00 0.00 0.00 2.92
2580 2610 6.808829 ACATTTTGAACTGCTTTGAGATGAA 58.191 32.000 0.00 0.00 0.00 2.57
2581 2611 6.698766 ACATTTTGAACTGCTTTGAGATGAAC 59.301 34.615 0.00 0.00 0.00 3.18
2582 2612 5.833406 TTTGAACTGCTTTGAGATGAACA 57.167 34.783 0.00 0.00 0.00 3.18
2583 2613 4.818534 TGAACTGCTTTGAGATGAACAC 57.181 40.909 0.00 0.00 0.00 3.32
2584 2614 3.248363 TGAACTGCTTTGAGATGAACACG 59.752 43.478 0.00 0.00 0.00 4.49
2585 2615 2.838736 ACTGCTTTGAGATGAACACGT 58.161 42.857 0.00 0.00 0.00 4.49
2586 2616 2.545526 ACTGCTTTGAGATGAACACGTG 59.454 45.455 15.48 15.48 0.00 4.49
2587 2617 2.545526 CTGCTTTGAGATGAACACGTGT 59.454 45.455 17.22 17.22 0.00 4.49
2588 2618 3.723260 TGCTTTGAGATGAACACGTGTA 58.277 40.909 23.69 7.77 0.00 2.90
2589 2619 3.740832 TGCTTTGAGATGAACACGTGTAG 59.259 43.478 23.69 13.08 0.00 2.74
2590 2620 3.741344 GCTTTGAGATGAACACGTGTAGT 59.259 43.478 23.69 7.20 0.00 2.73
2591 2621 4.211374 GCTTTGAGATGAACACGTGTAGTT 59.789 41.667 23.69 6.30 0.00 2.24
2592 2622 5.277345 GCTTTGAGATGAACACGTGTAGTTT 60.277 40.000 23.69 5.85 0.00 2.66
2593 2623 5.651172 TTGAGATGAACACGTGTAGTTTG 57.349 39.130 23.69 0.00 0.00 2.93
2594 2624 4.689071 TGAGATGAACACGTGTAGTTTGT 58.311 39.130 23.69 4.51 0.00 2.83
2595 2625 5.834169 TGAGATGAACACGTGTAGTTTGTA 58.166 37.500 23.69 4.28 0.00 2.41
2596 2626 5.688621 TGAGATGAACACGTGTAGTTTGTAC 59.311 40.000 23.69 10.16 0.00 2.90
2597 2627 4.986659 AGATGAACACGTGTAGTTTGTACC 59.013 41.667 23.69 4.76 0.00 3.34
2598 2628 3.114809 TGAACACGTGTAGTTTGTACCG 58.885 45.455 23.69 0.00 0.00 4.02
2599 2629 2.138596 ACACGTGTAGTTTGTACCGG 57.861 50.000 21.98 0.00 0.00 5.28
2600 2630 1.408702 ACACGTGTAGTTTGTACCGGT 59.591 47.619 21.98 13.98 0.00 5.28
2601 2631 2.053627 CACGTGTAGTTTGTACCGGTC 58.946 52.381 12.40 3.29 0.00 4.79
2602 2632 1.680735 ACGTGTAGTTTGTACCGGTCA 59.319 47.619 12.40 6.49 0.00 4.02
2603 2633 2.100584 ACGTGTAGTTTGTACCGGTCAA 59.899 45.455 12.40 13.03 0.00 3.18
2604 2634 2.472488 CGTGTAGTTTGTACCGGTCAAC 59.528 50.000 12.40 13.34 0.00 3.18
2605 2635 3.721035 GTGTAGTTTGTACCGGTCAACT 58.279 45.455 23.16 23.16 0.00 3.16
2606 2636 4.122046 GTGTAGTTTGTACCGGTCAACTT 58.878 43.478 24.22 15.06 0.00 2.66
2607 2637 4.571984 GTGTAGTTTGTACCGGTCAACTTT 59.428 41.667 24.22 13.30 0.00 2.66
2608 2638 5.065090 GTGTAGTTTGTACCGGTCAACTTTT 59.935 40.000 24.22 9.63 0.00 2.27
2609 2639 5.647225 TGTAGTTTGTACCGGTCAACTTTTT 59.353 36.000 24.22 9.36 0.00 1.94
2610 2640 4.989044 AGTTTGTACCGGTCAACTTTTTG 58.011 39.130 12.40 0.00 0.00 2.44
2611 2641 4.460034 AGTTTGTACCGGTCAACTTTTTGT 59.540 37.500 12.40 0.00 34.02 2.83
2612 2642 5.647225 AGTTTGTACCGGTCAACTTTTTGTA 59.353 36.000 12.40 0.00 34.02 2.41
2613 2643 5.738118 TTGTACCGGTCAACTTTTTGTAG 57.262 39.130 12.40 0.00 34.02 2.74
2614 2644 4.128643 TGTACCGGTCAACTTTTTGTAGG 58.871 43.478 12.40 0.00 34.02 3.18
2615 2645 3.286329 ACCGGTCAACTTTTTGTAGGT 57.714 42.857 0.00 0.00 34.02 3.08
2616 2646 3.623703 ACCGGTCAACTTTTTGTAGGTT 58.376 40.909 0.00 0.00 33.94 3.50
2617 2647 4.018490 ACCGGTCAACTTTTTGTAGGTTT 58.982 39.130 0.00 0.00 33.94 3.27
2618 2648 4.463539 ACCGGTCAACTTTTTGTAGGTTTT 59.536 37.500 0.00 0.00 33.94 2.43
2619 2649 5.651576 ACCGGTCAACTTTTTGTAGGTTTTA 59.348 36.000 0.00 0.00 33.94 1.52
2620 2650 6.321945 ACCGGTCAACTTTTTGTAGGTTTTAT 59.678 34.615 0.00 0.00 33.94 1.40
2621 2651 7.147863 ACCGGTCAACTTTTTGTAGGTTTTATT 60.148 33.333 0.00 0.00 33.94 1.40
2622 2652 7.707464 CCGGTCAACTTTTTGTAGGTTTTATTT 59.293 33.333 0.00 0.00 34.02 1.40
2623 2653 9.089601 CGGTCAACTTTTTGTAGGTTTTATTTT 57.910 29.630 0.00 0.00 34.02 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
353 354 3.369756 CACAAAACGTATACGGCATCTGT 59.630 43.478 27.62 18.76 44.95 3.41
581 582 2.584236 GACTGGAACTAGATCCCGCTA 58.416 52.381 15.88 0.00 38.82 4.26
874 875 2.877097 TGAAGCAGCCATTCCTTACA 57.123 45.000 0.00 0.00 0.00 2.41
1238 1239 0.035317 TTTGTCATCTCGCAGCACCT 59.965 50.000 0.00 0.00 0.00 4.00
1694 1695 7.822822 ACTGCTATTAAACCGTGAGAGTTTTAT 59.177 33.333 0.00 0.00 38.37 1.40
1696 1697 5.995897 ACTGCTATTAAACCGTGAGAGTTTT 59.004 36.000 0.00 0.00 38.37 2.43
1697 1698 5.548406 ACTGCTATTAAACCGTGAGAGTTT 58.452 37.500 0.00 0.00 40.43 2.66
1700 1701 6.147164 TCAAAACTGCTATTAAACCGTGAGAG 59.853 38.462 0.00 0.00 0.00 3.20
1701 1702 5.992829 TCAAAACTGCTATTAAACCGTGAGA 59.007 36.000 0.00 0.00 0.00 3.27
1702 1703 6.236017 TCAAAACTGCTATTAAACCGTGAG 57.764 37.500 0.00 0.00 0.00 3.51
1738 1749 7.646130 GTCCAAAGTATGATTCGTGTTTTTGAA 59.354 33.333 10.56 0.00 0.00 2.69
1739 1750 7.012894 AGTCCAAAGTATGATTCGTGTTTTTGA 59.987 33.333 10.56 2.29 0.00 2.69
1754 1765 6.381801 CGCTTGAAAATGAAGTCCAAAGTAT 58.618 36.000 0.00 0.00 0.00 2.12
1757 1768 3.983344 CCGCTTGAAAATGAAGTCCAAAG 59.017 43.478 0.00 0.00 0.00 2.77
1776 1787 3.896648 TTCTCAATTCTGACAAACCGC 57.103 42.857 0.00 0.00 0.00 5.68
1800 1811 1.667724 CTAGCTTTCCAACGCCATCTG 59.332 52.381 0.00 0.00 0.00 2.90
1845 1856 9.039165 ACCATATGGAATTTGAAAAGACATTCT 57.961 29.630 28.77 0.00 38.94 2.40
1846 1857 9.657419 AACCATATGGAATTTGAAAAGACATTC 57.343 29.630 28.77 0.00 38.94 2.67
1877 1888 8.365210 CCAAGATTTCATCGTTTTTCAAATACG 58.635 33.333 6.77 6.77 36.67 3.06
1881 1892 5.174761 CGCCAAGATTTCATCGTTTTTCAAA 59.825 36.000 0.00 0.00 0.00 2.69
1884 1895 4.472286 TCGCCAAGATTTCATCGTTTTTC 58.528 39.130 0.00 0.00 0.00 2.29
1890 1901 4.083581 ACTTTTCGCCAAGATTTCATCG 57.916 40.909 0.87 0.00 0.00 3.84
1891 1902 9.736023 AAATATACTTTTCGCCAAGATTTCATC 57.264 29.630 0.87 0.00 0.00 2.92
1893 1904 9.921637 AAAAATATACTTTTCGCCAAGATTTCA 57.078 25.926 0.87 0.00 0.00 2.69
1918 1931 7.489757 CCGACAAACTGTTTGAGGAAAAATAAA 59.510 33.333 33.05 0.00 43.26 1.40
1921 1936 5.126384 TCCGACAAACTGTTTGAGGAAAAAT 59.874 36.000 31.74 16.13 42.78 1.82
1927 1942 3.563808 TCAATCCGACAAACTGTTTGAGG 59.436 43.478 33.05 30.57 43.26 3.86
1928 1943 4.527564 GTCAATCCGACAAACTGTTTGAG 58.472 43.478 33.05 25.10 44.69 3.02
1935 1950 1.588674 TTGCGTCAATCCGACAAACT 58.411 45.000 0.00 0.00 45.70 2.66
2045 2063 4.920927 CGTTTGAAACCAACTTTCACTGTT 59.079 37.500 2.00 0.00 46.56 3.16
2051 2069 6.641176 AAATCACGTTTGAAACCAACTTTC 57.359 33.333 2.00 0.00 39.11 2.62
2084 2110 9.423061 GATATATAATTTGCCCCATTTCAACAC 57.577 33.333 0.00 0.00 0.00 3.32
2103 2129 5.534407 TCGCAAGCTTTCCAACGATATATA 58.466 37.500 0.00 0.00 37.18 0.86
2123 2149 4.025813 ACATGACAAAGTTTTGCATTTCGC 60.026 37.500 0.00 0.00 41.79 4.70
2139 2166 5.301555 TGGAGTAAACGATTCAACATGACA 58.698 37.500 0.00 0.00 0.00 3.58
2189 2216 2.866156 CACGACCGCTCACATCATATTT 59.134 45.455 0.00 0.00 0.00 1.40
2199 2226 2.156117 CGAAAAATAACACGACCGCTCA 59.844 45.455 0.00 0.00 0.00 4.26
2202 2229 1.464521 CCCGAAAAATAACACGACCGC 60.465 52.381 0.00 0.00 0.00 5.68
2205 2232 2.476241 ACGACCCGAAAAATAACACGAC 59.524 45.455 0.00 0.00 0.00 4.34
2213 2240 4.373348 TTGTTTTCACGACCCGAAAAAT 57.627 36.364 0.00 0.00 42.34 1.82
2225 2253 7.682460 CGCTTAGTTCAAAAACTTTGTTTTCAC 59.318 33.333 8.57 6.75 43.28 3.18
2226 2254 7.382759 ACGCTTAGTTCAAAAACTTTGTTTTCA 59.617 29.630 8.57 0.00 43.28 2.69
2227 2255 7.726079 ACGCTTAGTTCAAAAACTTTGTTTTC 58.274 30.769 8.57 0.00 43.28 2.29
2238 2266 4.082679 ACACAACCAACGCTTAGTTCAAAA 60.083 37.500 0.00 0.00 42.02 2.44
2239 2267 3.440872 ACACAACCAACGCTTAGTTCAAA 59.559 39.130 0.00 0.00 42.02 2.69
2243 2272 3.191791 ACAAACACAACCAACGCTTAGTT 59.808 39.130 0.00 0.00 45.45 2.24
2249 2278 2.096174 TCAGTACAAACACAACCAACGC 59.904 45.455 0.00 0.00 0.00 4.84
2251 2280 3.692593 ACCTCAGTACAAACACAACCAAC 59.307 43.478 0.00 0.00 0.00 3.77
2255 2285 8.185505 TGAAAAATACCTCAGTACAAACACAAC 58.814 33.333 0.00 0.00 0.00 3.32
2305 2335 9.394477 GCAAAGTTGTAAGGAAAACAGTAATAG 57.606 33.333 0.00 0.00 0.00 1.73
2306 2336 8.904834 TGCAAAGTTGTAAGGAAAACAGTAATA 58.095 29.630 0.00 0.00 0.00 0.98
2307 2337 7.777095 TGCAAAGTTGTAAGGAAAACAGTAAT 58.223 30.769 0.00 0.00 0.00 1.89
2308 2338 7.159322 TGCAAAGTTGTAAGGAAAACAGTAA 57.841 32.000 0.00 0.00 0.00 2.24
2309 2339 6.761099 TGCAAAGTTGTAAGGAAAACAGTA 57.239 33.333 0.00 0.00 0.00 2.74
2310 2340 5.652994 TGCAAAGTTGTAAGGAAAACAGT 57.347 34.783 0.00 0.00 0.00 3.55
2311 2341 5.866633 TGTTGCAAAGTTGTAAGGAAAACAG 59.133 36.000 0.00 0.00 33.49 3.16
2312 2342 5.784177 TGTTGCAAAGTTGTAAGGAAAACA 58.216 33.333 0.00 0.00 33.49 2.83
2313 2343 5.867174 ACTGTTGCAAAGTTGTAAGGAAAAC 59.133 36.000 0.00 0.00 33.49 2.43
2314 2344 6.031751 ACTGTTGCAAAGTTGTAAGGAAAA 57.968 33.333 0.00 0.00 33.49 2.29
2315 2345 5.652994 ACTGTTGCAAAGTTGTAAGGAAA 57.347 34.783 0.00 0.00 33.49 3.13
2316 2346 5.652994 AACTGTTGCAAAGTTGTAAGGAA 57.347 34.783 19.48 0.00 36.52 3.36
2317 2347 5.652994 AAACTGTTGCAAAGTTGTAAGGA 57.347 34.783 20.34 0.00 37.90 3.36
2318 2348 6.367422 TGAAAAACTGTTGCAAAGTTGTAAGG 59.633 34.615 20.34 0.00 37.90 2.69
2319 2349 7.328249 TCTGAAAAACTGTTGCAAAGTTGTAAG 59.672 33.333 20.34 16.66 37.90 2.34
2320 2350 7.148641 TCTGAAAAACTGTTGCAAAGTTGTAA 58.851 30.769 20.34 10.95 37.90 2.41
2321 2351 6.682746 TCTGAAAAACTGTTGCAAAGTTGTA 58.317 32.000 20.34 10.88 37.90 2.41
2322 2352 5.537188 TCTGAAAAACTGTTGCAAAGTTGT 58.463 33.333 20.34 15.26 37.90 3.32
2323 2353 6.464895 TTCTGAAAAACTGTTGCAAAGTTG 57.535 33.333 20.34 11.89 37.90 3.16
2324 2354 7.387397 TCAATTCTGAAAAACTGTTGCAAAGTT 59.613 29.630 16.38 16.38 39.55 2.66
2325 2355 6.873076 TCAATTCTGAAAAACTGTTGCAAAGT 59.127 30.769 0.00 4.53 0.00 2.66
2326 2356 7.063780 ACTCAATTCTGAAAAACTGTTGCAAAG 59.936 33.333 0.00 3.85 0.00 2.77
2327 2357 6.873076 ACTCAATTCTGAAAAACTGTTGCAAA 59.127 30.769 0.00 0.00 0.00 3.68
2328 2358 6.397272 ACTCAATTCTGAAAAACTGTTGCAA 58.603 32.000 0.00 0.00 0.00 4.08
2329 2359 5.964758 ACTCAATTCTGAAAAACTGTTGCA 58.035 33.333 0.00 0.00 0.00 4.08
2330 2360 7.985634 TTACTCAATTCTGAAAAACTGTTGC 57.014 32.000 0.00 0.00 0.00 4.17
2348 2378 9.037737 GCATTTCAACGGTATACTATTTACTCA 57.962 33.333 2.25 0.00 0.00 3.41
2349 2379 9.257651 AGCATTTCAACGGTATACTATTTACTC 57.742 33.333 2.25 0.00 0.00 2.59
2354 2384 9.772973 TCAATAGCATTTCAACGGTATACTATT 57.227 29.630 2.25 0.00 0.00 1.73
2355 2385 9.204570 GTCAATAGCATTTCAACGGTATACTAT 57.795 33.333 2.25 0.00 0.00 2.12
2356 2386 8.198778 TGTCAATAGCATTTCAACGGTATACTA 58.801 33.333 2.25 0.00 0.00 1.82
2357 2387 7.045416 TGTCAATAGCATTTCAACGGTATACT 58.955 34.615 2.25 0.00 0.00 2.12
2358 2388 7.241663 TGTCAATAGCATTTCAACGGTATAC 57.758 36.000 0.00 0.00 0.00 1.47
2359 2389 7.011950 CCTTGTCAATAGCATTTCAACGGTATA 59.988 37.037 0.00 0.00 0.00 1.47
2360 2390 6.183360 CCTTGTCAATAGCATTTCAACGGTAT 60.183 38.462 0.00 0.00 0.00 2.73
2361 2391 5.123186 CCTTGTCAATAGCATTTCAACGGTA 59.877 40.000 0.00 0.00 0.00 4.02
2362 2392 4.082787 CCTTGTCAATAGCATTTCAACGGT 60.083 41.667 0.00 0.00 0.00 4.83
2363 2393 4.414852 CCTTGTCAATAGCATTTCAACGG 58.585 43.478 0.00 0.00 0.00 4.44
2364 2394 4.414852 CCCTTGTCAATAGCATTTCAACG 58.585 43.478 0.00 0.00 0.00 4.10
2365 2395 4.462483 TCCCCTTGTCAATAGCATTTCAAC 59.538 41.667 0.00 0.00 0.00 3.18
2366 2396 4.671831 TCCCCTTGTCAATAGCATTTCAA 58.328 39.130 0.00 0.00 0.00 2.69
2367 2397 4.314522 TCCCCTTGTCAATAGCATTTCA 57.685 40.909 0.00 0.00 0.00 2.69
2368 2398 5.185828 AGTTTCCCCTTGTCAATAGCATTTC 59.814 40.000 0.00 0.00 0.00 2.17
2369 2399 5.086621 AGTTTCCCCTTGTCAATAGCATTT 58.913 37.500 0.00 0.00 0.00 2.32
2370 2400 4.677182 AGTTTCCCCTTGTCAATAGCATT 58.323 39.130 0.00 0.00 0.00 3.56
2371 2401 4.322057 AGTTTCCCCTTGTCAATAGCAT 57.678 40.909 0.00 0.00 0.00 3.79
2372 2402 3.806949 AGTTTCCCCTTGTCAATAGCA 57.193 42.857 0.00 0.00 0.00 3.49
2373 2403 5.468540 AAAAGTTTCCCCTTGTCAATAGC 57.531 39.130 0.00 0.00 0.00 2.97
2374 2404 7.049799 TGAAAAAGTTTCCCCTTGTCAATAG 57.950 36.000 0.00 0.00 0.00 1.73
2375 2405 7.070571 ACATGAAAAAGTTTCCCCTTGTCAATA 59.929 33.333 0.00 0.00 0.00 1.90
2376 2406 5.948742 TGAAAAAGTTTCCCCTTGTCAAT 57.051 34.783 0.00 0.00 0.00 2.57
2377 2407 5.188751 ACATGAAAAAGTTTCCCCTTGTCAA 59.811 36.000 0.00 0.00 0.00 3.18
2378 2408 4.714308 ACATGAAAAAGTTTCCCCTTGTCA 59.286 37.500 0.00 0.00 0.00 3.58
2379 2409 5.276461 ACATGAAAAAGTTTCCCCTTGTC 57.724 39.130 0.00 0.00 0.00 3.18
2380 2410 5.188751 TCAACATGAAAAAGTTTCCCCTTGT 59.811 36.000 0.00 0.00 0.00 3.16
2381 2411 5.669477 TCAACATGAAAAAGTTTCCCCTTG 58.331 37.500 0.00 0.00 0.00 3.61
2382 2412 5.948742 TCAACATGAAAAAGTTTCCCCTT 57.051 34.783 0.00 0.00 0.00 3.95
2383 2413 5.188751 TGTTCAACATGAAAAAGTTTCCCCT 59.811 36.000 0.00 0.00 38.22 4.79
2384 2414 5.423886 TGTTCAACATGAAAAAGTTTCCCC 58.576 37.500 0.00 0.00 38.22 4.81
2385 2415 7.552458 AATGTTCAACATGAAAAAGTTTCCC 57.448 32.000 3.07 0.00 37.97 3.97
2386 2416 9.838975 AAAAATGTTCAACATGAAAAAGTTTCC 57.161 25.926 3.07 0.00 37.97 3.13
2388 2418 9.127006 GCAAAAATGTTCAACATGAAAAAGTTT 57.873 25.926 3.07 0.00 37.97 2.66
2389 2419 8.295288 TGCAAAAATGTTCAACATGAAAAAGTT 58.705 25.926 3.07 0.00 37.97 2.66
2390 2420 7.814642 TGCAAAAATGTTCAACATGAAAAAGT 58.185 26.923 3.07 0.00 37.97 2.66
2391 2421 8.670804 TTGCAAAAATGTTCAACATGAAAAAG 57.329 26.923 3.07 0.00 37.97 2.27
2392 2422 9.635520 ATTTGCAAAAATGTTCAACATGAAAAA 57.364 22.222 17.19 0.90 37.97 1.94
2393 2423 9.635520 AATTTGCAAAAATGTTCAACATGAAAA 57.364 22.222 17.19 0.46 37.97 2.29
2394 2424 9.635520 AAATTTGCAAAAATGTTCAACATGAAA 57.364 22.222 17.19 0.00 37.97 2.69
2396 2426 9.713740 GTAAATTTGCAAAAATGTTCAACATGA 57.286 25.926 17.19 0.00 37.97 3.07
2397 2427 8.956014 GGTAAATTTGCAAAAATGTTCAACATG 58.044 29.630 17.19 0.00 37.97 3.21
2398 2428 8.680903 TGGTAAATTTGCAAAAATGTTCAACAT 58.319 25.926 17.19 0.00 41.31 2.71
2399 2429 8.044060 TGGTAAATTTGCAAAAATGTTCAACA 57.956 26.923 17.19 0.00 0.00 3.33
2400 2430 8.956014 CATGGTAAATTTGCAAAAATGTTCAAC 58.044 29.630 17.19 7.80 0.00 3.18
2401 2431 8.133627 CCATGGTAAATTTGCAAAAATGTTCAA 58.866 29.630 17.19 0.00 0.00 2.69
2402 2432 7.284034 ACCATGGTAAATTTGCAAAAATGTTCA 59.716 29.630 18.10 10.80 0.00 3.18
2403 2433 7.647228 ACCATGGTAAATTTGCAAAAATGTTC 58.353 30.769 18.10 5.52 0.00 3.18
2404 2434 7.579761 ACCATGGTAAATTTGCAAAAATGTT 57.420 28.000 18.10 10.41 0.00 2.71
2405 2435 7.579761 AACCATGGTAAATTTGCAAAAATGT 57.420 28.000 20.12 4.36 0.00 2.71
2406 2436 9.956720 TTAAACCATGGTAAATTTGCAAAAATG 57.043 25.926 20.12 12.19 0.00 2.32
2408 2438 9.396022 TCTTAAACCATGGTAAATTTGCAAAAA 57.604 25.926 20.12 1.90 0.00 1.94
2409 2439 8.964476 TCTTAAACCATGGTAAATTTGCAAAA 57.036 26.923 20.12 0.00 0.00 2.44
2410 2440 7.172361 GCTCTTAAACCATGGTAAATTTGCAAA 59.828 33.333 20.12 15.44 0.00 3.68
2411 2441 6.648725 GCTCTTAAACCATGGTAAATTTGCAA 59.351 34.615 20.12 0.00 0.00 4.08
2412 2442 6.162777 GCTCTTAAACCATGGTAAATTTGCA 58.837 36.000 20.12 0.00 0.00 4.08
2413 2443 6.162777 TGCTCTTAAACCATGGTAAATTTGC 58.837 36.000 20.12 18.35 0.00 3.68
2414 2444 6.813152 CCTGCTCTTAAACCATGGTAAATTTG 59.187 38.462 20.12 8.98 0.00 2.32
2415 2445 6.496911 ACCTGCTCTTAAACCATGGTAAATTT 59.503 34.615 20.12 11.43 0.00 1.82
2416 2446 6.016555 ACCTGCTCTTAAACCATGGTAAATT 58.983 36.000 20.12 11.82 0.00 1.82
2417 2447 5.580022 ACCTGCTCTTAAACCATGGTAAAT 58.420 37.500 20.12 10.37 0.00 1.40
2418 2448 4.993028 ACCTGCTCTTAAACCATGGTAAA 58.007 39.130 20.12 14.65 0.00 2.01
2419 2449 4.650972 ACCTGCTCTTAAACCATGGTAA 57.349 40.909 20.12 9.01 0.00 2.85
2420 2450 4.650972 AACCTGCTCTTAAACCATGGTA 57.349 40.909 20.12 0.00 0.00 3.25
2421 2451 3.525800 AACCTGCTCTTAAACCATGGT 57.474 42.857 13.00 13.00 0.00 3.55
2422 2452 3.826157 TCAAACCTGCTCTTAAACCATGG 59.174 43.478 11.19 11.19 0.00 3.66
2423 2453 5.452078 TTCAAACCTGCTCTTAAACCATG 57.548 39.130 0.00 0.00 0.00 3.66
2424 2454 6.570378 CGAATTCAAACCTGCTCTTAAACCAT 60.570 38.462 6.22 0.00 0.00 3.55
2425 2455 5.278266 CGAATTCAAACCTGCTCTTAAACCA 60.278 40.000 6.22 0.00 0.00 3.67
2426 2456 5.154222 CGAATTCAAACCTGCTCTTAAACC 58.846 41.667 6.22 0.00 0.00 3.27
2427 2457 5.154222 CCGAATTCAAACCTGCTCTTAAAC 58.846 41.667 6.22 0.00 0.00 2.01
2428 2458 4.825085 ACCGAATTCAAACCTGCTCTTAAA 59.175 37.500 6.22 0.00 0.00 1.52
2429 2459 4.215399 CACCGAATTCAAACCTGCTCTTAA 59.785 41.667 6.22 0.00 0.00 1.85
2430 2460 3.751175 CACCGAATTCAAACCTGCTCTTA 59.249 43.478 6.22 0.00 0.00 2.10
2431 2461 2.554032 CACCGAATTCAAACCTGCTCTT 59.446 45.455 6.22 0.00 0.00 2.85
2432 2462 2.154462 CACCGAATTCAAACCTGCTCT 58.846 47.619 6.22 0.00 0.00 4.09
2433 2463 2.151202 TCACCGAATTCAAACCTGCTC 58.849 47.619 6.22 0.00 0.00 4.26
2434 2464 2.270352 TCACCGAATTCAAACCTGCT 57.730 45.000 6.22 0.00 0.00 4.24
2435 2465 3.363341 TTTCACCGAATTCAAACCTGC 57.637 42.857 6.22 0.00 0.00 4.85
2436 2466 5.752955 ACAAATTTCACCGAATTCAAACCTG 59.247 36.000 6.22 2.84 0.00 4.00
2437 2467 5.912892 ACAAATTTCACCGAATTCAAACCT 58.087 33.333 6.22 0.00 0.00 3.50
2438 2468 7.883229 ATACAAATTTCACCGAATTCAAACC 57.117 32.000 6.22 0.00 0.00 3.27
2439 2469 8.973378 TCAATACAAATTTCACCGAATTCAAAC 58.027 29.630 6.22 0.00 0.00 2.93
2440 2470 9.534565 TTCAATACAAATTTCACCGAATTCAAA 57.465 25.926 6.22 0.00 0.00 2.69
2441 2471 8.973378 GTTCAATACAAATTTCACCGAATTCAA 58.027 29.630 6.22 0.00 0.00 2.69
2442 2472 8.356657 AGTTCAATACAAATTTCACCGAATTCA 58.643 29.630 6.22 0.00 0.00 2.57
2443 2473 8.742554 AGTTCAATACAAATTTCACCGAATTC 57.257 30.769 0.00 0.00 0.00 2.17
2444 2474 9.620660 GTAGTTCAATACAAATTTCACCGAATT 57.379 29.630 0.00 0.00 0.00 2.17
2445 2475 8.788806 TGTAGTTCAATACAAATTTCACCGAAT 58.211 29.630 0.00 0.00 32.80 3.34
2446 2476 8.155821 TGTAGTTCAATACAAATTTCACCGAA 57.844 30.769 0.00 0.00 32.80 4.30
2447 2477 7.731882 TGTAGTTCAATACAAATTTCACCGA 57.268 32.000 0.00 0.00 32.80 4.69
2448 2478 9.485591 GTATGTAGTTCAATACAAATTTCACCG 57.514 33.333 0.00 0.00 39.04 4.94
2466 2496 9.998106 ACAGTTCAAAAGTTAGATGTATGTAGT 57.002 29.630 0.00 0.00 0.00 2.73
2472 2502 8.761497 CGAGAAACAGTTCAAAAGTTAGATGTA 58.239 33.333 0.00 0.00 36.09 2.29
2473 2503 7.494625 TCGAGAAACAGTTCAAAAGTTAGATGT 59.505 33.333 0.00 0.00 36.09 3.06
2474 2504 7.851508 TCGAGAAACAGTTCAAAAGTTAGATG 58.148 34.615 0.00 0.00 36.09 2.90
2475 2505 8.433421 TTCGAGAAACAGTTCAAAAGTTAGAT 57.567 30.769 0.00 0.00 36.09 1.98
2476 2506 7.837202 TTCGAGAAACAGTTCAAAAGTTAGA 57.163 32.000 0.00 0.00 36.09 2.10
2477 2507 9.503427 AATTTCGAGAAACAGTTCAAAAGTTAG 57.497 29.630 0.00 0.00 36.09 2.34
2478 2508 9.284594 CAATTTCGAGAAACAGTTCAAAAGTTA 57.715 29.630 0.00 0.00 36.09 2.24
2479 2509 7.812669 ACAATTTCGAGAAACAGTTCAAAAGTT 59.187 29.630 0.00 0.00 36.09 2.66
2480 2510 7.312899 ACAATTTCGAGAAACAGTTCAAAAGT 58.687 30.769 0.00 0.00 36.09 2.66
2481 2511 7.740519 ACAATTTCGAGAAACAGTTCAAAAG 57.259 32.000 0.00 0.00 36.09 2.27
2482 2512 9.627395 TTTACAATTTCGAGAAACAGTTCAAAA 57.373 25.926 0.00 0.00 36.09 2.44
2483 2513 9.796120 ATTTACAATTTCGAGAAACAGTTCAAA 57.204 25.926 0.00 2.76 36.09 2.69
2484 2514 9.232082 CATTTACAATTTCGAGAAACAGTTCAA 57.768 29.630 0.00 1.43 36.09 2.69
2485 2515 8.616942 TCATTTACAATTTCGAGAAACAGTTCA 58.383 29.630 0.00 0.00 36.09 3.18
2486 2516 8.892905 GTCATTTACAATTTCGAGAAACAGTTC 58.107 33.333 0.00 0.00 32.51 3.01
2487 2517 8.402472 TGTCATTTACAATTTCGAGAAACAGTT 58.598 29.630 0.00 0.00 34.29 3.16
2488 2518 7.925993 TGTCATTTACAATTTCGAGAAACAGT 58.074 30.769 0.00 5.42 34.29 3.55
2489 2519 8.955061 ATGTCATTTACAATTTCGAGAAACAG 57.045 30.769 0.00 0.00 42.70 3.16
2490 2520 8.563732 TGATGTCATTTACAATTTCGAGAAACA 58.436 29.630 0.00 0.00 42.70 2.83
2491 2521 8.948853 TGATGTCATTTACAATTTCGAGAAAC 57.051 30.769 0.00 0.00 42.70 2.78
2543 2573 8.981647 GCAGTTCAAAATGTTCAGTCAAAATAT 58.018 29.630 0.00 0.00 0.00 1.28
2544 2574 8.196771 AGCAGTTCAAAATGTTCAGTCAAAATA 58.803 29.630 0.00 0.00 0.00 1.40
2545 2575 7.043565 AGCAGTTCAAAATGTTCAGTCAAAAT 58.956 30.769 0.00 0.00 0.00 1.82
2546 2576 6.397272 AGCAGTTCAAAATGTTCAGTCAAAA 58.603 32.000 0.00 0.00 0.00 2.44
2547 2577 5.964758 AGCAGTTCAAAATGTTCAGTCAAA 58.035 33.333 0.00 0.00 0.00 2.69
2548 2578 5.581126 AGCAGTTCAAAATGTTCAGTCAA 57.419 34.783 0.00 0.00 0.00 3.18
2549 2579 5.581126 AAGCAGTTCAAAATGTTCAGTCA 57.419 34.783 0.00 0.00 0.00 3.41
2550 2580 6.035843 TCAAAGCAGTTCAAAATGTTCAGTC 58.964 36.000 0.00 0.00 0.00 3.51
2551 2581 5.964758 TCAAAGCAGTTCAAAATGTTCAGT 58.035 33.333 0.00 0.00 0.00 3.41
2552 2582 6.267817 TCTCAAAGCAGTTCAAAATGTTCAG 58.732 36.000 0.00 0.00 0.00 3.02
2553 2583 6.206395 TCTCAAAGCAGTTCAAAATGTTCA 57.794 33.333 0.00 0.00 0.00 3.18
2554 2584 6.919662 TCATCTCAAAGCAGTTCAAAATGTTC 59.080 34.615 0.00 0.00 0.00 3.18
2555 2585 6.808829 TCATCTCAAAGCAGTTCAAAATGTT 58.191 32.000 0.00 0.00 0.00 2.71
2556 2586 6.395426 TCATCTCAAAGCAGTTCAAAATGT 57.605 33.333 0.00 0.00 0.00 2.71
2557 2587 6.698329 TGTTCATCTCAAAGCAGTTCAAAATG 59.302 34.615 0.00 0.00 0.00 2.32
2558 2588 6.698766 GTGTTCATCTCAAAGCAGTTCAAAAT 59.301 34.615 0.00 0.00 0.00 1.82
2559 2589 6.035843 GTGTTCATCTCAAAGCAGTTCAAAA 58.964 36.000 0.00 0.00 0.00 2.44
2560 2590 5.581605 GTGTTCATCTCAAAGCAGTTCAAA 58.418 37.500 0.00 0.00 0.00 2.69
2561 2591 4.260743 CGTGTTCATCTCAAAGCAGTTCAA 60.261 41.667 0.00 0.00 0.00 2.69
2562 2592 3.248363 CGTGTTCATCTCAAAGCAGTTCA 59.752 43.478 0.00 0.00 0.00 3.18
2563 2593 3.248602 ACGTGTTCATCTCAAAGCAGTTC 59.751 43.478 0.00 0.00 0.00 3.01
2564 2594 3.002656 CACGTGTTCATCTCAAAGCAGTT 59.997 43.478 7.58 0.00 0.00 3.16
2565 2595 2.545526 CACGTGTTCATCTCAAAGCAGT 59.454 45.455 7.58 0.00 0.00 4.40
2566 2596 2.545526 ACACGTGTTCATCTCAAAGCAG 59.454 45.455 17.22 0.00 0.00 4.24
2567 2597 2.560504 ACACGTGTTCATCTCAAAGCA 58.439 42.857 17.22 0.00 0.00 3.91
2568 2598 3.741344 ACTACACGTGTTCATCTCAAAGC 59.259 43.478 28.55 0.00 0.00 3.51
2569 2599 5.907197 AACTACACGTGTTCATCTCAAAG 57.093 39.130 28.55 16.55 0.00 2.77
2570 2600 5.583061 ACAAACTACACGTGTTCATCTCAAA 59.417 36.000 28.55 3.97 0.00 2.69
2571 2601 5.113383 ACAAACTACACGTGTTCATCTCAA 58.887 37.500 28.55 4.78 0.00 3.02
2572 2602 4.689071 ACAAACTACACGTGTTCATCTCA 58.311 39.130 28.55 5.62 0.00 3.27
2573 2603 5.118203 GGTACAAACTACACGTGTTCATCTC 59.882 44.000 28.55 10.59 0.00 2.75
2574 2604 4.986659 GGTACAAACTACACGTGTTCATCT 59.013 41.667 28.55 8.01 0.00 2.90
2575 2605 4.143473 CGGTACAAACTACACGTGTTCATC 60.143 45.833 28.55 9.26 0.00 2.92
2576 2606 3.737266 CGGTACAAACTACACGTGTTCAT 59.263 43.478 28.55 9.92 0.00 2.57
2577 2607 3.114809 CGGTACAAACTACACGTGTTCA 58.885 45.455 28.55 8.97 0.00 3.18
2578 2608 2.472488 CCGGTACAAACTACACGTGTTC 59.528 50.000 28.55 7.28 0.00 3.18
2579 2609 2.159114 ACCGGTACAAACTACACGTGTT 60.159 45.455 28.55 10.23 0.00 3.32
2580 2610 1.408702 ACCGGTACAAACTACACGTGT 59.591 47.619 26.52 26.52 0.00 4.49
2581 2611 2.053627 GACCGGTACAAACTACACGTG 58.946 52.381 15.48 15.48 0.00 4.49
2582 2612 1.680735 TGACCGGTACAAACTACACGT 59.319 47.619 7.34 0.00 0.00 4.49
2583 2613 2.420628 TGACCGGTACAAACTACACG 57.579 50.000 7.34 0.00 0.00 4.49
2584 2614 3.721035 AGTTGACCGGTACAAACTACAC 58.279 45.455 21.95 10.49 0.00 2.90
2585 2615 4.405116 AAGTTGACCGGTACAAACTACA 57.595 40.909 22.99 7.16 0.00 2.74
2586 2616 5.739752 AAAAGTTGACCGGTACAAACTAC 57.260 39.130 22.99 11.93 0.00 2.73
2587 2617 5.647225 ACAAAAAGTTGACCGGTACAAACTA 59.353 36.000 22.99 0.93 38.20 2.24
2588 2618 4.460034 ACAAAAAGTTGACCGGTACAAACT 59.540 37.500 19.11 19.11 38.20 2.66
2589 2619 4.735985 ACAAAAAGTTGACCGGTACAAAC 58.264 39.130 7.34 13.14 38.20 2.93
2590 2620 5.066246 CCTACAAAAAGTTGACCGGTACAAA 59.934 40.000 7.34 0.00 38.20 2.83
2591 2621 4.575645 CCTACAAAAAGTTGACCGGTACAA 59.424 41.667 7.34 11.35 38.20 2.41
2592 2622 4.128643 CCTACAAAAAGTTGACCGGTACA 58.871 43.478 7.34 4.61 38.20 2.90
2593 2623 4.129380 ACCTACAAAAAGTTGACCGGTAC 58.871 43.478 7.34 2.29 38.20 3.34
2594 2624 4.420522 ACCTACAAAAAGTTGACCGGTA 57.579 40.909 7.34 0.00 38.20 4.02
2595 2625 3.286329 ACCTACAAAAAGTTGACCGGT 57.714 42.857 6.92 6.92 38.20 5.28
2596 2626 4.642445 AAACCTACAAAAAGTTGACCGG 57.358 40.909 0.00 0.00 38.20 5.28
2597 2627 8.637281 AAATAAAACCTACAAAAAGTTGACCG 57.363 30.769 0.00 0.00 38.20 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.