Multiple sequence alignment - TraesCS5A01G216700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G216700 chr5A 100.000 2960 0 0 1 2960 433487735 433490694 0.000000e+00 5467.0
1 TraesCS5A01G216700 chr5A 85.624 946 122 7 1001 1945 433517971 433518903 0.000000e+00 981.0
2 TraesCS5A01G216700 chr5A 91.667 96 8 0 70 165 550234031 550234126 1.850000e-27 134.0
3 TraesCS5A01G216700 chr5A 86.290 124 10 5 797 914 433517705 433517827 8.610000e-26 128.0
4 TraesCS5A01G216700 chr5A 80.508 118 19 4 2273 2388 85775903 85776018 1.460000e-13 87.9
5 TraesCS5A01G216700 chr5A 89.796 49 4 1 14 62 66345290 66345337 8.860000e-06 62.1
6 TraesCS5A01G216700 chr5D 92.435 2062 106 18 783 2810 332503114 332505159 0.000000e+00 2898.0
7 TraesCS5A01G216700 chr5D 86.364 946 124 4 1001 1945 332508867 332509808 0.000000e+00 1027.0
8 TraesCS5A01G216700 chr5D 85.484 124 14 3 824 943 332508638 332508761 3.100000e-25 126.0
9 TraesCS5A01G216700 chr5D 87.129 101 9 4 78 175 101772169 101772070 8.670000e-21 111.0
10 TraesCS5A01G216700 chr5B 92.952 1277 47 21 783 2029 388534167 388535430 0.000000e+00 1820.0
11 TraesCS5A01G216700 chr5B 86.364 946 124 4 1001 1945 388539079 388540020 0.000000e+00 1027.0
12 TraesCS5A01G216700 chr5B 87.614 767 85 7 2028 2790 388535511 388536271 0.000000e+00 881.0
13 TraesCS5A01G216700 chr5B 83.871 124 16 3 824 943 388538845 388538968 6.700000e-22 115.0
14 TraesCS5A01G216700 chr6A 98.667 150 2 0 2811 2960 169194653 169194802 1.750000e-67 267.0
15 TraesCS5A01G216700 chr6A 92.473 93 7 0 78 170 585087664 585087756 1.850000e-27 134.0
16 TraesCS5A01G216700 chr1A 95.364 151 4 3 2811 2960 304956658 304956806 1.370000e-58 237.0
17 TraesCS5A01G216700 chr1A 94.702 151 5 3 2811 2960 304954988 304955136 6.380000e-57 231.0
18 TraesCS5A01G216700 chr1A 92.715 151 8 3 2811 2960 304954472 304954620 6.430000e-52 215.0
19 TraesCS5A01G216700 chr1A 77.673 318 56 14 2079 2390 495286949 495286641 2.340000e-41 180.0
20 TraesCS5A01G216700 chr1A 82.051 117 17 4 2542 2655 449163488 449163603 2.430000e-16 97.1
21 TraesCS5A01G216700 chr1A 87.755 49 5 1 581 628 21513568 21513616 4.120000e-04 56.5
22 TraesCS5A01G216700 chr4A 79.351 339 58 10 2057 2388 54087163 54086830 8.250000e-56 228.0
23 TraesCS5A01G216700 chr4A 91.525 118 7 2 2811 2927 614541932 614542047 3.050000e-35 159.0
24 TraesCS5A01G216700 chr4A 79.433 141 28 1 2556 2695 134055372 134055512 6.750000e-17 99.0
25 TraesCS5A01G216700 chr7D 92.000 100 8 0 70 169 575754406 575754307 1.110000e-29 141.0
26 TraesCS5A01G216700 chr7D 100.000 30 0 0 599 628 442290705 442290734 4.120000e-04 56.5
27 TraesCS5A01G216700 chr7D 100.000 30 0 0 740 769 463711419 463711448 4.120000e-04 56.5
28 TraesCS5A01G216700 chr7B 75.291 344 60 18 2053 2388 42859429 42859755 1.110000e-29 141.0
29 TraesCS5A01G216700 chr7B 75.829 211 34 14 2519 2717 401134814 401134609 1.130000e-14 91.6
30 TraesCS5A01G216700 chr1B 89.109 101 11 0 70 170 442948264 442948364 3.100000e-25 126.0
31 TraesCS5A01G216700 chr1B 100.000 31 0 0 600 630 681108215 681108185 1.150000e-04 58.4
32 TraesCS5A01G216700 chr1D 90.323 93 9 0 78 170 329495806 329495714 4.010000e-24 122.0
33 TraesCS5A01G216700 chr1D 84.211 76 11 1 553 628 345274173 345274247 4.090000e-09 73.1
34 TraesCS5A01G216700 chr3B 89.000 100 8 3 79 175 18727270 18727171 1.440000e-23 121.0
35 TraesCS5A01G216700 chr6D 90.909 88 8 0 63 150 149358358 149358445 5.180000e-23 119.0
36 TraesCS5A01G216700 chr6D 100.000 30 0 0 599 628 50645251 50645280 4.120000e-04 56.5
37 TraesCS5A01G216700 chr2A 84.483 116 15 3 63 175 764918522 764918407 8.670000e-21 111.0
38 TraesCS5A01G216700 chr6B 82.759 116 18 2 2542 2656 451481172 451481286 5.220000e-18 102.0
39 TraesCS5A01G216700 chr3A 81.818 121 18 4 2539 2656 1517430 1517549 6.750000e-17 99.0
40 TraesCS5A01G216700 chr7A 83.516 91 13 2 2555 2644 180380631 180380720 1.890000e-12 84.2
41 TraesCS5A01G216700 chr2B 92.857 56 4 0 7 62 740271884 740271939 6.800000e-12 82.4
42 TraesCS5A01G216700 chr4D 84.416 77 10 2 556 630 63956959 63956883 1.140000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G216700 chr5A 433487735 433490694 2959 False 5467.000000 5467 100.000000 1 2960 1 chr5A.!!$F3 2959
1 TraesCS5A01G216700 chr5A 433517705 433518903 1198 False 554.500000 981 85.957000 797 1945 2 chr5A.!!$F5 1148
2 TraesCS5A01G216700 chr5D 332503114 332509808 6694 False 1350.333333 2898 88.094333 783 2810 3 chr5D.!!$F1 2027
3 TraesCS5A01G216700 chr5B 388534167 388540020 5853 False 960.750000 1820 87.700250 783 2790 4 chr5B.!!$F1 2007
4 TraesCS5A01G216700 chr1A 304954472 304956806 2334 False 227.666667 237 94.260333 2811 2960 3 chr1A.!!$F3 149

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.034198 TTCAACATGCGGGAAGACGA 59.966 50.0 0.0 0.0 35.47 4.20 F
167 168 0.034896 AACATGCGGGAAGACGAGTT 59.965 50.0 0.0 0.0 35.47 3.01 F
363 364 0.036577 CTTGACCAGGGAGCAGACTG 60.037 60.0 0.0 0.0 34.54 3.51 F
1716 1742 0.036952 AGCAGATCAGGAACCACACG 60.037 55.0 0.0 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1104 1130 1.012486 GGGCGAACTCGTTGTGGTAG 61.012 60.000 0.51 0.0 42.22 3.18 R
1698 1724 1.021390 CCGTGTGGTTCCTGATCTGC 61.021 60.000 0.00 0.0 0.00 4.26 R
1948 1974 1.567649 ACCCAGTCATCAATCCATGCT 59.432 47.619 0.00 0.0 0.00 3.79 R
2857 6774 0.179171 TCGAAAGGAAGTAGCGAGCG 60.179 55.000 0.00 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.179127 AGATGGATCTGACGTGTGCG 60.179 55.000 0.00 0.00 38.86 5.34
21 22 3.521162 TAGATGGATCTGACGTGTGCGT 61.521 50.000 0.00 0.00 45.13 5.24
22 23 4.238886 TAGATGGATCTGACGTGTGCGTA 61.239 47.826 0.00 0.00 43.78 4.42
23 24 6.263536 TAGATGGATCTGACGTGTGCGTAC 62.264 50.000 0.00 0.00 43.78 3.67
51 52 3.926821 TTTGAAATTACTGCGTTCCCC 57.073 42.857 0.00 0.00 0.00 4.81
52 53 2.570415 TGAAATTACTGCGTTCCCCA 57.430 45.000 0.00 0.00 0.00 4.96
53 54 2.865079 TGAAATTACTGCGTTCCCCAA 58.135 42.857 0.00 0.00 0.00 4.12
54 55 2.554893 TGAAATTACTGCGTTCCCCAAC 59.445 45.455 0.00 0.00 0.00 3.77
55 56 2.279935 AATTACTGCGTTCCCCAACA 57.720 45.000 0.00 0.00 32.14 3.33
56 57 2.507407 ATTACTGCGTTCCCCAACAT 57.493 45.000 0.00 0.00 32.14 2.71
57 58 3.637911 ATTACTGCGTTCCCCAACATA 57.362 42.857 0.00 0.00 32.14 2.29
58 59 3.637911 TTACTGCGTTCCCCAACATAT 57.362 42.857 0.00 0.00 32.14 1.78
59 60 4.757019 TTACTGCGTTCCCCAACATATA 57.243 40.909 0.00 0.00 32.14 0.86
60 61 3.194005 ACTGCGTTCCCCAACATATAG 57.806 47.619 0.00 0.00 32.14 1.31
62 63 3.707611 ACTGCGTTCCCCAACATATAGTA 59.292 43.478 0.00 0.00 32.14 1.82
63 64 4.202223 ACTGCGTTCCCCAACATATAGTAG 60.202 45.833 0.00 0.00 32.14 2.57
66 67 4.560919 GCGTTCCCCAACATATAGTAGGAG 60.561 50.000 0.00 0.00 32.14 3.69
68 69 3.517612 TCCCCAACATATAGTAGGAGCC 58.482 50.000 0.00 0.00 0.00 4.70
69 70 2.233922 CCCCAACATATAGTAGGAGCCG 59.766 54.545 0.00 0.00 0.00 5.52
70 71 2.233922 CCCAACATATAGTAGGAGCCGG 59.766 54.545 0.00 0.00 0.00 6.13
71 72 3.162666 CCAACATATAGTAGGAGCCGGA 58.837 50.000 5.05 0.00 0.00 5.14
72 73 3.193691 CCAACATATAGTAGGAGCCGGAG 59.806 52.174 5.05 0.00 0.00 4.63
73 74 4.079970 CAACATATAGTAGGAGCCGGAGA 58.920 47.826 5.05 0.00 0.00 3.71
74 75 4.383931 ACATATAGTAGGAGCCGGAGAA 57.616 45.455 5.05 0.00 0.00 2.87
75 76 4.337145 ACATATAGTAGGAGCCGGAGAAG 58.663 47.826 5.05 0.00 0.00 2.85
76 77 4.043059 ACATATAGTAGGAGCCGGAGAAGA 59.957 45.833 5.05 0.00 0.00 2.87
77 78 3.596940 ATAGTAGGAGCCGGAGAAGAA 57.403 47.619 5.05 0.00 0.00 2.52
78 79 1.770294 AGTAGGAGCCGGAGAAGAAG 58.230 55.000 5.05 0.00 0.00 2.85
79 80 0.747852 GTAGGAGCCGGAGAAGAAGG 59.252 60.000 5.05 0.00 0.00 3.46
80 81 0.629596 TAGGAGCCGGAGAAGAAGGA 59.370 55.000 5.05 0.00 0.00 3.36
82 83 1.139947 GAGCCGGAGAAGAAGGACG 59.860 63.158 5.05 0.00 0.00 4.79
83 84 2.184579 GCCGGAGAAGAAGGACGG 59.815 66.667 5.05 0.00 46.78 4.79
85 86 2.202623 CGGAGAAGAAGGACGGCG 60.203 66.667 4.80 4.80 0.00 6.46
86 87 2.697761 CGGAGAAGAAGGACGGCGA 61.698 63.158 16.62 0.00 0.00 5.54
87 88 1.139947 GGAGAAGAAGGACGGCGAG 59.860 63.158 16.62 0.00 0.00 5.03
88 89 1.139947 GAGAAGAAGGACGGCGAGG 59.860 63.158 16.62 0.00 0.00 4.63
89 90 1.304217 AGAAGAAGGACGGCGAGGA 60.304 57.895 16.62 0.00 0.00 3.71
90 91 1.153804 GAAGAAGGACGGCGAGGAC 60.154 63.158 16.62 0.00 0.00 3.85
92 93 3.437795 GAAGGACGGCGAGGACGA 61.438 66.667 16.62 0.00 42.66 4.20
94 95 2.938539 GAAGGACGGCGAGGACGATG 62.939 65.000 16.62 0.00 42.66 3.84
95 96 3.515286 GGACGGCGAGGACGATGA 61.515 66.667 16.62 0.00 42.66 2.92
97 98 1.370657 GACGGCGAGGACGATGATC 60.371 63.158 16.62 0.00 42.66 2.92
98 99 2.049985 CGGCGAGGACGATGATCC 60.050 66.667 0.00 0.00 42.66 3.36
99 100 2.049985 GGCGAGGACGATGATCCG 60.050 66.667 0.00 0.00 44.22 4.18
100 101 2.049985 GCGAGGACGATGATCCGG 60.050 66.667 0.00 0.00 44.22 5.14
103 104 0.109551 CGAGGACGATGATCCGGATG 60.110 60.000 24.82 10.08 44.22 3.51
104 105 1.248486 GAGGACGATGATCCGGATGA 58.752 55.000 24.82 15.57 44.22 2.92
105 106 1.821753 GAGGACGATGATCCGGATGAT 59.178 52.381 24.82 20.66 44.22 2.45
106 107 3.017442 GAGGACGATGATCCGGATGATA 58.983 50.000 24.82 8.48 44.22 2.15
107 108 2.755655 AGGACGATGATCCGGATGATAC 59.244 50.000 24.82 13.37 44.22 2.24
108 109 2.492088 GGACGATGATCCGGATGATACA 59.508 50.000 24.82 14.20 32.41 2.29
110 111 3.157881 ACGATGATCCGGATGATACAGT 58.842 45.455 24.82 16.41 32.41 3.55
111 112 3.191581 ACGATGATCCGGATGATACAGTC 59.808 47.826 24.82 6.52 32.41 3.51
112 113 3.729163 CGATGATCCGGATGATACAGTCG 60.729 52.174 24.82 15.47 32.41 4.18
113 114 1.886542 TGATCCGGATGATACAGTCGG 59.113 52.381 24.82 0.00 41.80 4.79
115 116 1.371758 CCGGATGATACAGTCGGCG 60.372 63.158 0.00 0.00 34.17 6.46
116 117 1.652563 CGGATGATACAGTCGGCGA 59.347 57.895 4.99 4.99 0.00 5.54
117 118 0.241213 CGGATGATACAGTCGGCGAT 59.759 55.000 14.79 0.00 0.00 4.58
118 119 1.702886 GGATGATACAGTCGGCGATG 58.297 55.000 14.79 14.76 0.00 3.84
119 120 1.063806 GATGATACAGTCGGCGATGC 58.936 55.000 14.79 0.00 0.00 3.91
122 123 0.594028 GATACAGTCGGCGATGCGAA 60.594 55.000 14.79 0.00 0.00 4.70
123 124 0.595053 ATACAGTCGGCGATGCGAAG 60.595 55.000 14.79 2.25 0.00 3.79
126 127 1.517257 AGTCGGCGATGCGAAGAAG 60.517 57.895 14.79 0.00 0.00 2.85
127 128 1.516386 GTCGGCGATGCGAAGAAGA 60.516 57.895 14.79 0.00 0.00 2.87
128 129 1.076533 GTCGGCGATGCGAAGAAGAA 61.077 55.000 14.79 0.00 0.00 2.52
129 130 0.802222 TCGGCGATGCGAAGAAGAAG 60.802 55.000 4.99 0.00 0.00 2.85
130 131 1.756375 CGGCGATGCGAAGAAGAAGG 61.756 60.000 0.00 0.00 0.00 3.46
131 132 1.432270 GGCGATGCGAAGAAGAAGGG 61.432 60.000 0.00 0.00 0.00 3.95
132 133 0.741221 GCGATGCGAAGAAGAAGGGT 60.741 55.000 0.00 0.00 0.00 4.34
134 135 2.464865 CGATGCGAAGAAGAAGGGTAG 58.535 52.381 0.00 0.00 0.00 3.18
136 137 3.712187 GATGCGAAGAAGAAGGGTAGAG 58.288 50.000 0.00 0.00 0.00 2.43
137 138 1.825474 TGCGAAGAAGAAGGGTAGAGG 59.175 52.381 0.00 0.00 0.00 3.69
139 140 2.100087 GCGAAGAAGAAGGGTAGAGGAG 59.900 54.545 0.00 0.00 0.00 3.69
140 141 3.622630 CGAAGAAGAAGGGTAGAGGAGA 58.377 50.000 0.00 0.00 0.00 3.71
142 143 4.463186 CGAAGAAGAAGGGTAGAGGAGAAA 59.537 45.833 0.00 0.00 0.00 2.52
145 146 5.407936 AGAAGAAGGGTAGAGGAGAAAGTT 58.592 41.667 0.00 0.00 0.00 2.66
146 147 5.847265 AGAAGAAGGGTAGAGGAGAAAGTTT 59.153 40.000 0.00 0.00 0.00 2.66
147 148 5.748670 AGAAGGGTAGAGGAGAAAGTTTC 57.251 43.478 7.57 7.57 0.00 2.78
148 149 5.155905 AGAAGGGTAGAGGAGAAAGTTTCA 58.844 41.667 17.65 0.00 0.00 2.69
150 151 5.230323 AGGGTAGAGGAGAAAGTTTCAAC 57.770 43.478 17.65 9.50 0.00 3.18
152 153 5.310857 AGGGTAGAGGAGAAAGTTTCAACAT 59.689 40.000 17.65 8.73 0.00 2.71
153 154 5.412904 GGGTAGAGGAGAAAGTTTCAACATG 59.587 44.000 17.65 0.00 0.00 3.21
154 155 5.106515 GGTAGAGGAGAAAGTTTCAACATGC 60.107 44.000 17.65 2.47 0.00 4.06
156 157 2.554032 AGGAGAAAGTTTCAACATGCGG 59.446 45.455 17.65 0.00 0.00 5.69
157 158 2.351738 GGAGAAAGTTTCAACATGCGGG 60.352 50.000 17.65 0.00 0.00 6.13
159 160 2.955660 AGAAAGTTTCAACATGCGGGAA 59.044 40.909 17.65 0.00 0.00 3.97
160 161 3.004734 AGAAAGTTTCAACATGCGGGAAG 59.995 43.478 17.65 0.00 0.00 3.46
162 163 1.880027 AGTTTCAACATGCGGGAAGAC 59.120 47.619 0.00 0.00 0.00 3.01
163 164 0.871722 TTTCAACATGCGGGAAGACG 59.128 50.000 0.00 0.00 0.00 4.18
164 165 0.034198 TTCAACATGCGGGAAGACGA 59.966 50.000 0.00 0.00 35.47 4.20
165 166 0.389817 TCAACATGCGGGAAGACGAG 60.390 55.000 0.00 0.00 35.47 4.18
166 167 0.670546 CAACATGCGGGAAGACGAGT 60.671 55.000 0.00 0.00 35.47 4.18
167 168 0.034896 AACATGCGGGAAGACGAGTT 59.965 50.000 0.00 0.00 35.47 3.01
168 169 0.670546 ACATGCGGGAAGACGAGTTG 60.671 55.000 0.00 0.00 35.47 3.16
169 170 0.670546 CATGCGGGAAGACGAGTTGT 60.671 55.000 0.00 0.00 35.47 3.32
170 171 0.670546 ATGCGGGAAGACGAGTTGTG 60.671 55.000 0.00 0.00 35.47 3.33
172 173 2.372690 CGGGAAGACGAGTTGTGCG 61.373 63.158 0.00 0.00 35.47 5.34
173 174 1.006571 GGGAAGACGAGTTGTGCGA 60.007 57.895 0.00 0.00 0.00 5.10
174 175 0.389948 GGGAAGACGAGTTGTGCGAT 60.390 55.000 0.00 0.00 0.00 4.58
177 178 2.329379 GAAGACGAGTTGTGCGATTCT 58.671 47.619 0.00 0.00 0.00 2.40
178 179 2.440539 AGACGAGTTGTGCGATTCTT 57.559 45.000 0.00 0.00 0.00 2.52
179 180 2.755650 AGACGAGTTGTGCGATTCTTT 58.244 42.857 0.00 0.00 0.00 2.52
181 182 1.531149 ACGAGTTGTGCGATTCTTTGG 59.469 47.619 0.00 0.00 0.00 3.28
183 184 2.416547 CGAGTTGTGCGATTCTTTGGAT 59.583 45.455 0.00 0.00 0.00 3.41
184 185 3.725895 CGAGTTGTGCGATTCTTTGGATG 60.726 47.826 0.00 0.00 0.00 3.51
186 187 1.825090 TGTGCGATTCTTTGGATGCT 58.175 45.000 0.00 0.00 0.00 3.79
187 188 2.984562 TGTGCGATTCTTTGGATGCTA 58.015 42.857 0.00 0.00 0.00 3.49
188 189 3.342719 TGTGCGATTCTTTGGATGCTAA 58.657 40.909 0.00 0.00 0.00 3.09
189 190 3.374988 TGTGCGATTCTTTGGATGCTAAG 59.625 43.478 2.06 2.06 0.00 2.18
191 192 4.274459 GTGCGATTCTTTGGATGCTAAGAT 59.726 41.667 11.48 3.24 31.00 2.40
192 193 4.274214 TGCGATTCTTTGGATGCTAAGATG 59.726 41.667 11.48 6.68 31.00 2.90
193 194 4.274459 GCGATTCTTTGGATGCTAAGATGT 59.726 41.667 11.48 4.62 31.00 3.06
195 196 6.197276 CGATTCTTTGGATGCTAAGATGTTG 58.803 40.000 11.48 5.02 31.00 3.33
196 197 6.037500 CGATTCTTTGGATGCTAAGATGTTGA 59.962 38.462 11.48 0.00 31.00 3.18
199 200 4.574674 TTGGATGCTAAGATGTTGACCT 57.425 40.909 0.00 0.00 0.00 3.85
200 201 4.574674 TGGATGCTAAGATGTTGACCTT 57.425 40.909 0.00 0.00 0.00 3.50
201 202 4.264253 TGGATGCTAAGATGTTGACCTTG 58.736 43.478 0.00 0.00 0.00 3.61
202 203 4.019411 TGGATGCTAAGATGTTGACCTTGA 60.019 41.667 0.00 0.00 0.00 3.02
203 204 4.943705 GGATGCTAAGATGTTGACCTTGAA 59.056 41.667 0.00 0.00 0.00 2.69
205 206 5.885230 TGCTAAGATGTTGACCTTGAATG 57.115 39.130 0.00 0.00 0.00 2.67
206 207 5.316167 TGCTAAGATGTTGACCTTGAATGT 58.684 37.500 0.00 0.00 0.00 2.71
207 208 5.181811 TGCTAAGATGTTGACCTTGAATGTG 59.818 40.000 0.00 0.00 0.00 3.21
208 209 5.412594 GCTAAGATGTTGACCTTGAATGTGA 59.587 40.000 0.00 0.00 0.00 3.58
209 210 6.072508 GCTAAGATGTTGACCTTGAATGTGAA 60.073 38.462 0.00 0.00 0.00 3.18
210 211 5.695851 AGATGTTGACCTTGAATGTGAAC 57.304 39.130 0.00 0.00 31.57 3.18
213 214 4.780815 TGTTGACCTTGAATGTGAACTCT 58.219 39.130 4.86 0.00 32.09 3.24
214 215 5.192927 TGTTGACCTTGAATGTGAACTCTT 58.807 37.500 4.86 0.00 32.09 2.85
215 216 5.652014 TGTTGACCTTGAATGTGAACTCTTT 59.348 36.000 4.86 0.00 32.09 2.52
216 217 5.756195 TGACCTTGAATGTGAACTCTTTG 57.244 39.130 0.00 0.00 0.00 2.77
218 219 5.885352 TGACCTTGAATGTGAACTCTTTGAA 59.115 36.000 0.00 0.00 0.00 2.69
219 220 6.547141 TGACCTTGAATGTGAACTCTTTGAAT 59.453 34.615 0.00 0.00 0.00 2.57
220 221 6.742109 ACCTTGAATGTGAACTCTTTGAATG 58.258 36.000 0.00 0.00 0.00 2.67
222 223 5.125100 TGAATGTGAACTCTTTGAATGCC 57.875 39.130 0.00 0.00 0.00 4.40
223 224 4.828939 TGAATGTGAACTCTTTGAATGCCT 59.171 37.500 0.00 0.00 0.00 4.75
224 225 6.003326 TGAATGTGAACTCTTTGAATGCCTA 58.997 36.000 0.00 0.00 0.00 3.93
226 227 3.745975 TGTGAACTCTTTGAATGCCTACG 59.254 43.478 0.00 0.00 0.00 3.51
227 228 2.742053 TGAACTCTTTGAATGCCTACGC 59.258 45.455 0.00 0.00 0.00 4.42
238 239 2.689553 TGCCTACGCAAGAATGATCA 57.310 45.000 0.00 0.00 43.74 2.92
239 240 3.198409 TGCCTACGCAAGAATGATCAT 57.802 42.857 1.18 1.18 43.74 2.45
240 241 2.874086 TGCCTACGCAAGAATGATCATG 59.126 45.455 9.46 0.00 43.74 3.07
242 243 4.058124 GCCTACGCAAGAATGATCATGTA 58.942 43.478 9.46 5.16 43.62 2.29
243 244 4.511454 GCCTACGCAAGAATGATCATGTAA 59.489 41.667 9.46 0.00 43.62 2.41
244 245 5.180117 GCCTACGCAAGAATGATCATGTAAT 59.820 40.000 9.46 0.00 43.62 1.89
245 246 6.293626 GCCTACGCAAGAATGATCATGTAATT 60.294 38.462 9.46 0.00 43.62 1.40
246 247 7.095229 GCCTACGCAAGAATGATCATGTAATTA 60.095 37.037 9.46 0.00 43.62 1.40
247 248 8.438513 CCTACGCAAGAATGATCATGTAATTAG 58.561 37.037 9.46 4.83 43.62 1.73
248 249 7.792374 ACGCAAGAATGATCATGTAATTAGT 57.208 32.000 9.46 2.31 43.62 2.24
249 250 7.855545 ACGCAAGAATGATCATGTAATTAGTC 58.144 34.615 9.46 0.11 43.62 2.59
250 251 7.041780 ACGCAAGAATGATCATGTAATTAGTCC 60.042 37.037 9.46 0.00 43.62 3.85
251 252 7.293745 GCAAGAATGATCATGTAATTAGTCCG 58.706 38.462 9.46 0.00 0.00 4.79
253 254 6.763355 AGAATGATCATGTAATTAGTCCGCT 58.237 36.000 9.46 0.00 0.00 5.52
254 255 7.896811 AGAATGATCATGTAATTAGTCCGCTA 58.103 34.615 9.46 0.00 0.00 4.26
255 256 8.367911 AGAATGATCATGTAATTAGTCCGCTAA 58.632 33.333 9.46 0.00 40.98 3.09
258 259 6.923508 TGATCATGTAATTAGTCCGCTAACAG 59.076 38.462 0.00 0.00 39.70 3.16
259 260 6.459670 TCATGTAATTAGTCCGCTAACAGA 57.540 37.500 0.00 0.00 39.70 3.41
260 261 7.050970 TCATGTAATTAGTCCGCTAACAGAT 57.949 36.000 0.00 0.00 39.70 2.90
262 263 6.216801 TGTAATTAGTCCGCTAACAGATGT 57.783 37.500 0.00 0.00 39.70 3.06
263 264 6.636705 TGTAATTAGTCCGCTAACAGATGTT 58.363 36.000 3.37 3.37 39.70 2.71
264 265 6.755141 TGTAATTAGTCCGCTAACAGATGTTC 59.245 38.462 0.59 0.00 39.70 3.18
265 266 5.599999 ATTAGTCCGCTAACAGATGTTCT 57.400 39.130 0.59 0.00 39.70 3.01
266 267 6.710597 ATTAGTCCGCTAACAGATGTTCTA 57.289 37.500 0.59 0.00 39.70 2.10
267 268 4.640789 AGTCCGCTAACAGATGTTCTAG 57.359 45.455 0.59 0.00 39.31 2.43
272 273 2.738643 GCTAACAGATGTTCTAGCGGCA 60.739 50.000 1.45 0.00 39.31 5.69
273 274 2.015736 AACAGATGTTCTAGCGGCAG 57.984 50.000 1.45 0.00 31.64 4.85
274 275 1.186200 ACAGATGTTCTAGCGGCAGA 58.814 50.000 1.45 0.05 0.00 4.26
275 276 1.550524 ACAGATGTTCTAGCGGCAGAA 59.449 47.619 1.45 6.76 32.11 3.02
276 277 2.028112 ACAGATGTTCTAGCGGCAGAAA 60.028 45.455 13.74 7.49 36.34 2.52
277 278 2.606725 CAGATGTTCTAGCGGCAGAAAG 59.393 50.000 13.74 1.95 36.34 2.62
278 279 2.497675 AGATGTTCTAGCGGCAGAAAGA 59.502 45.455 13.74 4.01 36.34 2.52
279 280 3.133721 AGATGTTCTAGCGGCAGAAAGAT 59.866 43.478 13.74 10.14 36.34 2.40
281 282 1.855360 GTTCTAGCGGCAGAAAGATCG 59.145 52.381 13.74 0.00 36.34 3.69
282 283 0.385751 TCTAGCGGCAGAAAGATCGG 59.614 55.000 1.45 0.00 0.00 4.18
283 284 0.103208 CTAGCGGCAGAAAGATCGGT 59.897 55.000 1.45 0.00 37.17 4.69
284 285 0.535335 TAGCGGCAGAAAGATCGGTT 59.465 50.000 1.45 0.00 35.06 4.44
285 286 1.021390 AGCGGCAGAAAGATCGGTTG 61.021 55.000 1.45 0.00 0.00 3.77
288 289 1.425428 GCAGAAAGATCGGTTGGCG 59.575 57.895 0.00 0.00 0.00 5.69
289 290 1.982073 GCAGAAAGATCGGTTGGCGG 61.982 60.000 0.00 0.00 0.00 6.13
290 291 1.745489 AGAAAGATCGGTTGGCGGC 60.745 57.895 0.00 0.00 0.00 6.53
291 292 3.095898 GAAAGATCGGTTGGCGGCG 62.096 63.158 0.51 0.51 0.00 6.46
305 306 4.467084 GGCGCCGGACAATGAGGA 62.467 66.667 12.58 0.00 0.00 3.71
306 307 3.195698 GCGCCGGACAATGAGGAC 61.196 66.667 5.05 0.00 0.00 3.85
307 308 2.885644 CGCCGGACAATGAGGACG 60.886 66.667 5.05 0.00 0.00 4.79
308 309 3.195698 GCCGGACAATGAGGACGC 61.196 66.667 5.05 0.00 0.00 5.19
309 310 2.885644 CCGGACAATGAGGACGCG 60.886 66.667 3.53 3.53 0.00 6.01
311 312 2.158959 CGGACAATGAGGACGCGAC 61.159 63.158 15.93 6.56 0.00 5.19
313 314 0.460284 GGACAATGAGGACGCGACAT 60.460 55.000 15.93 3.25 0.00 3.06
314 315 0.647410 GACAATGAGGACGCGACATG 59.353 55.000 15.93 4.60 0.00 3.21
315 316 0.740868 ACAATGAGGACGCGACATGG 60.741 55.000 15.93 12.50 0.00 3.66
324 325 2.421739 GCGACATGGGCGGTCTAT 59.578 61.111 11.38 0.00 33.11 1.98
325 326 1.956170 GCGACATGGGCGGTCTATG 60.956 63.158 4.26 4.26 39.83 2.23
327 328 1.956170 GACATGGGCGGTCTATGCG 60.956 63.158 5.81 0.00 37.81 4.73
328 329 2.666190 CATGGGCGGTCTATGCGG 60.666 66.667 0.00 0.00 0.00 5.69
345 346 4.664677 GCAGCGACGACACCACCT 62.665 66.667 0.00 0.00 0.00 4.00
348 349 2.028484 GCGACGACACCACCTTGA 59.972 61.111 0.00 0.00 0.00 3.02
349 350 2.308039 GCGACGACACCACCTTGAC 61.308 63.158 0.00 0.00 0.00 3.18
350 351 1.663702 CGACGACACCACCTTGACC 60.664 63.158 0.00 0.00 0.00 4.02
360 361 3.811702 CCTTGACCAGGGAGCAGA 58.188 61.111 0.00 0.00 39.39 4.26
361 362 1.298014 CCTTGACCAGGGAGCAGAC 59.702 63.158 0.00 0.00 39.39 3.51
362 363 1.197430 CCTTGACCAGGGAGCAGACT 61.197 60.000 0.00 0.00 39.39 3.24
363 364 0.036577 CTTGACCAGGGAGCAGACTG 60.037 60.000 0.00 0.00 34.54 3.51
364 365 2.116983 TTGACCAGGGAGCAGACTGC 62.117 60.000 20.12 20.12 45.46 4.40
373 374 3.194719 GCAGACTGCTGGGATTGC 58.805 61.111 20.41 0.00 42.53 3.56
374 375 2.413142 GCAGACTGCTGGGATTGCC 61.413 63.158 20.41 0.00 42.53 4.52
375 376 1.001764 CAGACTGCTGGGATTGCCA 60.002 57.895 0.00 0.00 38.51 4.92
377 378 0.106819 AGACTGCTGGGATTGCCATC 60.107 55.000 0.00 0.00 35.15 3.51
399 400 3.190878 GGGCAGAAGATTGCACGG 58.809 61.111 0.11 0.00 45.86 4.94
400 401 1.377202 GGGCAGAAGATTGCACGGA 60.377 57.895 0.11 0.00 45.86 4.69
401 402 1.648467 GGGCAGAAGATTGCACGGAC 61.648 60.000 0.11 0.00 45.86 4.79
403 404 0.445436 GCAGAAGATTGCACGGACTG 59.555 55.000 0.00 0.00 43.53 3.51
412 413 2.573869 CACGGACTGCGGACTGAT 59.426 61.111 10.93 0.00 0.00 2.90
413 414 1.807165 CACGGACTGCGGACTGATG 60.807 63.158 10.93 2.07 0.00 3.07
414 415 2.276116 ACGGACTGCGGACTGATGT 61.276 57.895 10.93 0.00 0.00 3.06
416 417 0.670546 CGGACTGCGGACTGATGTTT 60.671 55.000 0.00 0.00 0.00 2.83
417 418 1.523758 GGACTGCGGACTGATGTTTT 58.476 50.000 0.00 0.00 0.00 2.43
418 419 1.880027 GGACTGCGGACTGATGTTTTT 59.120 47.619 0.00 0.00 0.00 1.94
445 446 8.335532 TGGATTCAGACATGTAAAAACTAAGG 57.664 34.615 0.00 0.00 0.00 2.69
446 447 8.160765 TGGATTCAGACATGTAAAAACTAAGGA 58.839 33.333 0.00 0.00 0.00 3.36
447 448 8.451748 GGATTCAGACATGTAAAAACTAAGGAC 58.548 37.037 0.00 0.00 0.00 3.85
449 450 7.724305 TCAGACATGTAAAAACTAAGGACAC 57.276 36.000 0.00 0.00 0.00 3.67
450 451 7.276658 TCAGACATGTAAAAACTAAGGACACA 58.723 34.615 0.00 0.00 0.00 3.72
451 452 7.936847 TCAGACATGTAAAAACTAAGGACACAT 59.063 33.333 0.00 0.00 0.00 3.21
453 454 7.817418 ACATGTAAAAACTAAGGACACATGT 57.183 32.000 10.70 10.70 46.04 3.21
455 456 8.099364 CATGTAAAAACTAAGGACACATGTCT 57.901 34.615 11.63 0.00 44.20 3.41
456 457 8.567948 CATGTAAAAACTAAGGACACATGTCTT 58.432 33.333 11.63 0.00 44.20 3.01
457 458 8.514330 TGTAAAAACTAAGGACACATGTCTTT 57.486 30.769 13.18 13.18 44.78 2.52
458 459 8.962679 TGTAAAAACTAAGGACACATGTCTTTT 58.037 29.630 13.76 11.81 40.78 2.27
480 481 6.561737 TTTTTAGTTGTGATCGGCATACAA 57.438 33.333 0.00 0.00 32.39 2.41
481 482 6.751514 TTTTAGTTGTGATCGGCATACAAT 57.248 33.333 0.00 0.00 36.78 2.71
483 484 4.142609 AGTTGTGATCGGCATACAATCT 57.857 40.909 0.00 0.00 36.78 2.40
484 485 3.873361 AGTTGTGATCGGCATACAATCTG 59.127 43.478 0.00 0.00 36.78 2.90
485 486 2.837498 TGTGATCGGCATACAATCTGG 58.163 47.619 0.00 0.00 0.00 3.86
490 491 2.180204 GGCATACAATCTGGCGCGT 61.180 57.895 8.43 0.00 0.00 6.01
491 492 1.714899 GGCATACAATCTGGCGCGTT 61.715 55.000 8.43 0.00 0.00 4.84
493 494 0.726827 CATACAATCTGGCGCGTTGT 59.273 50.000 15.11 15.11 39.26 3.32
495 496 1.906994 TACAATCTGGCGCGTTGTGC 61.907 55.000 18.81 0.00 36.78 4.57
504 505 3.554692 GCGTTGTGCGGATCGGAG 61.555 66.667 4.16 0.00 41.69 4.63
505 506 2.126071 CGTTGTGCGGATCGGAGT 60.126 61.111 4.16 0.00 36.85 3.85
506 507 1.736645 CGTTGTGCGGATCGGAGTT 60.737 57.895 4.16 0.00 36.85 3.01
507 508 1.289109 CGTTGTGCGGATCGGAGTTT 61.289 55.000 4.16 0.00 36.85 2.66
508 509 1.717194 GTTGTGCGGATCGGAGTTTA 58.283 50.000 4.16 0.00 0.00 2.01
509 510 2.277084 GTTGTGCGGATCGGAGTTTAT 58.723 47.619 4.16 0.00 0.00 1.40
511 512 2.980568 TGTGCGGATCGGAGTTTATTT 58.019 42.857 4.16 0.00 0.00 1.40
513 514 2.933906 GTGCGGATCGGAGTTTATTTGA 59.066 45.455 4.16 0.00 0.00 2.69
514 515 3.372822 GTGCGGATCGGAGTTTATTTGAA 59.627 43.478 4.16 0.00 0.00 2.69
516 517 4.638421 TGCGGATCGGAGTTTATTTGAATT 59.362 37.500 4.16 0.00 0.00 2.17
518 519 5.455525 GCGGATCGGAGTTTATTTGAATTTG 59.544 40.000 4.16 0.00 0.00 2.32
519 520 6.676943 GCGGATCGGAGTTTATTTGAATTTGA 60.677 38.462 4.16 0.00 0.00 2.69
520 521 7.247728 CGGATCGGAGTTTATTTGAATTTGAA 58.752 34.615 0.00 0.00 0.00 2.69
521 522 7.753132 CGGATCGGAGTTTATTTGAATTTGAAA 59.247 33.333 0.00 0.00 0.00 2.69
522 523 9.586435 GGATCGGAGTTTATTTGAATTTGAAAT 57.414 29.630 0.00 0.00 0.00 2.17
525 526 8.707839 TCGGAGTTTATTTGAATTTGAAATTGC 58.292 29.630 8.03 1.13 0.00 3.56
538 539 4.159377 TGAAATTGCTCTTTACTTGCGG 57.841 40.909 0.00 0.00 0.00 5.69
540 541 3.831715 AATTGCTCTTTACTTGCGGAC 57.168 42.857 0.00 0.00 0.00 4.79
541 542 2.248280 TTGCTCTTTACTTGCGGACA 57.752 45.000 0.00 0.00 0.00 4.02
543 544 3.603158 TGCTCTTTACTTGCGGACATA 57.397 42.857 0.00 0.00 0.00 2.29
544 545 4.137116 TGCTCTTTACTTGCGGACATAT 57.863 40.909 0.00 0.00 0.00 1.78
545 546 5.270893 TGCTCTTTACTTGCGGACATATA 57.729 39.130 0.00 0.00 0.00 0.86
547 548 6.988522 TGCTCTTTACTTGCGGACATATATA 58.011 36.000 0.00 0.00 0.00 0.86
549 550 6.531948 GCTCTTTACTTGCGGACATATATAGG 59.468 42.308 0.00 0.00 0.00 2.57
550 551 7.577046 GCTCTTTACTTGCGGACATATATAGGA 60.577 40.741 0.54 0.00 0.00 2.94
551 552 8.362464 TCTTTACTTGCGGACATATATAGGAT 57.638 34.615 0.54 0.00 0.00 3.24
552 553 9.470399 TCTTTACTTGCGGACATATATAGGATA 57.530 33.333 0.54 0.00 0.00 2.59
553 554 9.737427 CTTTACTTGCGGACATATATAGGATAG 57.263 37.037 0.54 0.00 0.00 2.08
554 555 6.716934 ACTTGCGGACATATATAGGATAGG 57.283 41.667 0.54 0.00 0.00 2.57
556 557 5.138758 TGCGGACATATATAGGATAGGGT 57.861 43.478 0.54 0.00 0.00 4.34
558 559 5.362717 TGCGGACATATATAGGATAGGGTTG 59.637 44.000 0.54 0.00 0.00 3.77
559 560 5.221461 GCGGACATATATAGGATAGGGTTGG 60.221 48.000 0.54 0.00 0.00 3.77
560 561 6.134055 CGGACATATATAGGATAGGGTTGGA 58.866 44.000 0.54 0.00 0.00 3.53
561 562 6.782988 CGGACATATATAGGATAGGGTTGGAT 59.217 42.308 0.54 0.00 0.00 3.41
562 563 7.255977 CGGACATATATAGGATAGGGTTGGATG 60.256 44.444 0.54 0.00 0.00 3.51
563 564 7.789831 GGACATATATAGGATAGGGTTGGATGA 59.210 40.741 0.54 0.00 0.00 2.92
565 566 7.287927 ACATATATAGGATAGGGTTGGATGACG 59.712 40.741 0.54 0.00 0.00 4.35
566 567 2.471815 AGGATAGGGTTGGATGACGA 57.528 50.000 0.00 0.00 0.00 4.20
567 568 2.040178 AGGATAGGGTTGGATGACGAC 58.960 52.381 0.00 0.00 0.00 4.34
574 575 2.457366 GTTGGATGACGACCTTCTGT 57.543 50.000 0.00 0.00 0.00 3.41
575 576 3.587797 GTTGGATGACGACCTTCTGTA 57.412 47.619 0.00 0.00 0.00 2.74
579 580 4.503910 TGGATGACGACCTTCTGTATTTG 58.496 43.478 0.00 0.00 0.00 2.32
580 581 4.020573 TGGATGACGACCTTCTGTATTTGT 60.021 41.667 0.00 0.00 0.00 2.83
581 582 4.330074 GGATGACGACCTTCTGTATTTGTG 59.670 45.833 0.00 0.00 0.00 3.33
584 585 3.660865 ACGACCTTCTGTATTTGTGTCC 58.339 45.455 0.00 0.00 0.00 4.02
585 586 2.666508 CGACCTTCTGTATTTGTGTCCG 59.333 50.000 0.00 0.00 0.00 4.79
587 588 2.224426 ACCTTCTGTATTTGTGTCCGCA 60.224 45.455 0.00 0.00 0.00 5.69
588 589 2.416547 CCTTCTGTATTTGTGTCCGCAG 59.583 50.000 0.00 0.00 0.00 5.18
589 590 3.325870 CTTCTGTATTTGTGTCCGCAGA 58.674 45.455 0.00 0.00 0.00 4.26
591 592 2.299013 TCTGTATTTGTGTCCGCAGACT 59.701 45.455 1.05 0.00 43.91 3.24
592 593 3.508402 TCTGTATTTGTGTCCGCAGACTA 59.492 43.478 1.05 0.00 43.91 2.59
593 594 4.021807 TCTGTATTTGTGTCCGCAGACTAA 60.022 41.667 1.05 0.00 43.91 2.24
594 595 4.827692 TGTATTTGTGTCCGCAGACTAAT 58.172 39.130 1.05 2.09 43.91 1.73
596 597 3.678056 TTTGTGTCCGCAGACTAATCT 57.322 42.857 1.05 0.00 43.91 2.40
597 598 3.678056 TTGTGTCCGCAGACTAATCTT 57.322 42.857 1.05 0.00 43.91 2.40
600 601 3.182967 GTGTCCGCAGACTAATCTTCTG 58.817 50.000 1.05 0.00 43.91 3.02
601 602 2.826128 TGTCCGCAGACTAATCTTCTGT 59.174 45.455 1.05 0.00 43.91 3.41
603 604 2.427453 TCCGCAGACTAATCTTCTGTCC 59.573 50.000 1.59 0.00 42.26 4.02
604 605 2.166459 CCGCAGACTAATCTTCTGTCCA 59.834 50.000 1.59 0.00 42.26 4.02
607 608 3.775202 CAGACTAATCTTCTGTCCACGG 58.225 50.000 0.00 0.00 36.50 4.94
608 609 3.444034 CAGACTAATCTTCTGTCCACGGA 59.556 47.826 0.00 0.00 36.50 4.69
609 610 3.444388 AGACTAATCTTCTGTCCACGGAC 59.556 47.826 9.38 9.38 44.77 4.79
610 611 7.062333 CAGACTAATCTTCTGTCCACGGACA 62.062 48.000 17.71 17.71 42.18 4.02
617 618 2.509336 GTCCACGGACAGATGCGG 60.509 66.667 11.43 0.00 45.25 5.69
618 619 3.770040 TCCACGGACAGATGCGGG 61.770 66.667 0.00 0.00 45.25 6.13
621 622 2.362503 ACGGACAGATGCGGGAGA 60.363 61.111 0.00 0.00 45.25 3.71
622 623 1.982395 ACGGACAGATGCGGGAGAA 60.982 57.895 0.00 0.00 45.25 2.87
624 625 0.391130 CGGACAGATGCGGGAGAAAA 60.391 55.000 0.00 0.00 35.75 2.29
625 626 1.743772 CGGACAGATGCGGGAGAAAAT 60.744 52.381 0.00 0.00 35.75 1.82
626 627 2.369394 GGACAGATGCGGGAGAAAATT 58.631 47.619 0.00 0.00 0.00 1.82
627 628 2.755103 GGACAGATGCGGGAGAAAATTT 59.245 45.455 0.00 0.00 0.00 1.82
629 630 4.201920 GGACAGATGCGGGAGAAAATTTAC 60.202 45.833 0.00 0.00 0.00 2.01
630 631 4.331968 ACAGATGCGGGAGAAAATTTACA 58.668 39.130 0.00 0.00 0.00 2.41
631 632 4.396166 ACAGATGCGGGAGAAAATTTACAG 59.604 41.667 0.00 0.00 0.00 2.74
632 633 4.635765 CAGATGCGGGAGAAAATTTACAGA 59.364 41.667 0.00 0.00 0.00 3.41
633 634 5.297776 CAGATGCGGGAGAAAATTTACAGAT 59.702 40.000 0.00 0.00 0.00 2.90
634 635 6.483307 CAGATGCGGGAGAAAATTTACAGATA 59.517 38.462 0.00 0.00 0.00 1.98
636 637 5.984725 TGCGGGAGAAAATTTACAGATAGA 58.015 37.500 0.00 0.00 0.00 1.98
637 638 6.591935 TGCGGGAGAAAATTTACAGATAGAT 58.408 36.000 0.00 0.00 0.00 1.98
638 639 7.054124 TGCGGGAGAAAATTTACAGATAGATT 58.946 34.615 0.00 0.00 0.00 2.40
639 640 7.226720 TGCGGGAGAAAATTTACAGATAGATTC 59.773 37.037 0.00 0.00 0.00 2.52
640 641 7.308049 GCGGGAGAAAATTTACAGATAGATTCC 60.308 40.741 0.00 0.00 0.00 3.01
641 642 7.173390 CGGGAGAAAATTTACAGATAGATTCCC 59.827 40.741 0.00 0.00 0.00 3.97
642 643 8.221251 GGGAGAAAATTTACAGATAGATTCCCT 58.779 37.037 0.00 0.00 0.00 4.20
643 644 9.634021 GGAGAAAATTTACAGATAGATTCCCTT 57.366 33.333 0.00 0.00 0.00 3.95
670 671 8.770850 TTTTAATAGTACAACAAAAGACACGC 57.229 30.769 0.00 0.00 0.00 5.34
671 672 5.994887 AATAGTACAACAAAAGACACGCA 57.005 34.783 0.00 0.00 0.00 5.24
672 673 3.668596 AGTACAACAAAAGACACGCAC 57.331 42.857 0.00 0.00 0.00 5.34
674 675 2.542766 ACAACAAAAGACACGCACAG 57.457 45.000 0.00 0.00 0.00 3.66
676 677 1.094785 AACAAAAGACACGCACAGCT 58.905 45.000 0.00 0.00 0.00 4.24
677 678 1.094785 ACAAAAGACACGCACAGCTT 58.905 45.000 0.00 0.00 0.00 3.74
678 679 1.202177 ACAAAAGACACGCACAGCTTG 60.202 47.619 0.00 0.00 33.94 4.01
687 688 3.773117 GCACAGCTTGCGTGTTATT 57.227 47.368 14.88 0.00 42.79 1.40
688 689 1.330306 GCACAGCTTGCGTGTTATTG 58.670 50.000 14.88 0.00 42.79 1.90
689 690 1.069296 GCACAGCTTGCGTGTTATTGA 60.069 47.619 14.88 0.00 42.79 2.57
690 691 2.604373 GCACAGCTTGCGTGTTATTGAA 60.604 45.455 14.88 0.00 42.79 2.69
691 692 3.228749 CACAGCTTGCGTGTTATTGAAG 58.771 45.455 8.57 0.00 0.00 3.02
692 693 3.058983 CACAGCTTGCGTGTTATTGAAGA 60.059 43.478 8.57 0.00 0.00 2.87
693 694 3.563808 ACAGCTTGCGTGTTATTGAAGAA 59.436 39.130 0.00 0.00 0.00 2.52
696 697 5.458452 CAGCTTGCGTGTTATTGAAGAAAAA 59.542 36.000 0.00 0.00 0.00 1.94
724 725 5.916661 CTAGTTTCCTAGGTCAAGTAGCA 57.083 43.478 17.99 0.00 37.59 3.49
725 726 6.472686 CTAGTTTCCTAGGTCAAGTAGCAT 57.527 41.667 17.99 0.00 37.59 3.79
726 727 5.763876 AGTTTCCTAGGTCAAGTAGCATT 57.236 39.130 9.08 0.00 0.00 3.56
727 728 5.491982 AGTTTCCTAGGTCAAGTAGCATTG 58.508 41.667 9.08 0.00 0.00 2.82
728 729 5.013183 AGTTTCCTAGGTCAAGTAGCATTGT 59.987 40.000 9.08 0.00 0.00 2.71
731 732 3.452627 CCTAGGTCAAGTAGCATTGTCCT 59.547 47.826 15.46 15.46 46.20 3.85
732 733 3.340814 AGGTCAAGTAGCATTGTCCTG 57.659 47.619 12.06 0.00 43.94 3.86
733 734 2.639839 AGGTCAAGTAGCATTGTCCTGT 59.360 45.455 12.06 0.00 43.94 4.00
734 735 3.838317 AGGTCAAGTAGCATTGTCCTGTA 59.162 43.478 12.06 0.00 43.94 2.74
735 736 4.286032 AGGTCAAGTAGCATTGTCCTGTAA 59.714 41.667 12.06 0.00 43.94 2.41
736 737 4.631813 GGTCAAGTAGCATTGTCCTGTAAG 59.368 45.833 5.70 0.00 36.03 2.34
737 738 5.479306 GTCAAGTAGCATTGTCCTGTAAGA 58.521 41.667 0.00 0.00 34.07 2.10
741 742 4.532521 AGTAGCATTGTCCTGTAAGAACCT 59.467 41.667 0.00 0.00 34.07 3.50
742 743 5.720041 AGTAGCATTGTCCTGTAAGAACCTA 59.280 40.000 0.00 0.00 34.07 3.08
743 744 5.091261 AGCATTGTCCTGTAAGAACCTAG 57.909 43.478 0.00 0.00 34.07 3.02
744 745 4.080863 AGCATTGTCCTGTAAGAACCTAGG 60.081 45.833 7.41 7.41 34.07 3.02
745 746 4.770795 CATTGTCCTGTAAGAACCTAGGG 58.229 47.826 14.81 0.00 34.07 3.53
748 749 2.500504 GTCCTGTAAGAACCTAGGGGTG 59.499 54.545 14.81 0.00 46.67 4.61
749 750 1.838077 CCTGTAAGAACCTAGGGGTGG 59.162 57.143 14.81 0.00 46.67 4.61
750 751 1.838077 CTGTAAGAACCTAGGGGTGGG 59.162 57.143 14.81 0.00 46.67 4.61
751 752 1.437945 TGTAAGAACCTAGGGGTGGGA 59.562 52.381 14.81 0.00 46.67 4.37
753 754 0.496841 AAGAACCTAGGGGTGGGAGT 59.503 55.000 14.81 0.00 46.67 3.85
754 755 1.400941 AGAACCTAGGGGTGGGAGTA 58.599 55.000 14.81 0.00 46.67 2.59
755 756 1.291335 AGAACCTAGGGGTGGGAGTAG 59.709 57.143 14.81 0.00 46.67 2.57
757 758 1.313475 CCTAGGGGTGGGAGTAGCA 59.687 63.158 0.00 0.00 0.00 3.49
758 759 0.760945 CCTAGGGGTGGGAGTAGCAG 60.761 65.000 0.00 0.00 0.00 4.24
759 760 0.261991 CTAGGGGTGGGAGTAGCAGA 59.738 60.000 0.00 0.00 0.00 4.26
760 761 0.941963 TAGGGGTGGGAGTAGCAGAT 59.058 55.000 0.00 0.00 0.00 2.90
761 762 0.941963 AGGGGTGGGAGTAGCAGATA 59.058 55.000 0.00 0.00 0.00 1.98
765 766 3.244596 GGGGTGGGAGTAGCAGATATTTC 60.245 52.174 0.00 0.00 0.00 2.17
766 767 3.244596 GGGTGGGAGTAGCAGATATTTCC 60.245 52.174 0.00 0.00 0.00 3.13
770 771 2.979678 GGAGTAGCAGATATTTCCCCCA 59.020 50.000 0.00 0.00 0.00 4.96
771 772 3.394606 GGAGTAGCAGATATTTCCCCCAA 59.605 47.826 0.00 0.00 0.00 4.12
772 773 4.505742 GGAGTAGCAGATATTTCCCCCAAG 60.506 50.000 0.00 0.00 0.00 3.61
773 774 4.047883 AGTAGCAGATATTTCCCCCAAGT 58.952 43.478 0.00 0.00 0.00 3.16
774 775 5.224441 AGTAGCAGATATTTCCCCCAAGTA 58.776 41.667 0.00 0.00 0.00 2.24
776 777 4.047883 AGCAGATATTTCCCCCAAGTAGT 58.952 43.478 0.00 0.00 0.00 2.73
777 778 5.224441 AGCAGATATTTCCCCCAAGTAGTA 58.776 41.667 0.00 0.00 0.00 1.82
778 779 5.308237 AGCAGATATTTCCCCCAAGTAGTAG 59.692 44.000 0.00 0.00 0.00 2.57
779 780 5.071923 GCAGATATTTCCCCCAAGTAGTAGT 59.928 44.000 0.00 0.00 0.00 2.73
780 781 6.269307 GCAGATATTTCCCCCAAGTAGTAGTA 59.731 42.308 0.00 0.00 0.00 1.82
781 782 7.525692 GCAGATATTTCCCCCAAGTAGTAGTAG 60.526 44.444 0.00 0.00 0.00 2.57
782 783 7.509659 CAGATATTTCCCCCAAGTAGTAGTAGT 59.490 40.741 0.00 0.00 0.00 2.73
783 784 8.740512 AGATATTTCCCCCAAGTAGTAGTAGTA 58.259 37.037 0.00 0.00 0.00 1.82
784 785 8.953223 ATATTTCCCCCAAGTAGTAGTAGTAG 57.047 38.462 0.00 0.00 0.00 2.57
785 786 4.176120 TCCCCCAAGTAGTAGTAGTAGC 57.824 50.000 0.00 0.00 0.00 3.58
787 788 3.373438 CCCCCAAGTAGTAGTAGTAGCCA 60.373 52.174 0.00 0.00 0.00 4.75
788 789 4.284178 CCCCAAGTAGTAGTAGTAGCCAA 58.716 47.826 0.00 0.00 0.00 4.52
833 839 2.628178 CCCGTCATCTGAGCTACCATTA 59.372 50.000 0.00 0.00 0.00 1.90
837 843 4.626042 GTCATCTGAGCTACCATTACCAG 58.374 47.826 0.00 0.00 0.00 4.00
868 874 0.868406 GGTCGACTTTGAGCCAACAG 59.132 55.000 16.46 0.00 0.00 3.16
942 948 3.147132 TGCGTTCAGGAGGCAGAA 58.853 55.556 0.00 0.00 43.65 3.02
954 980 1.302192 GGCAGAAACCTACGCCACA 60.302 57.895 0.00 0.00 44.25 4.17
990 1016 2.278531 ACACAGCGCGCAAAAACC 60.279 55.556 35.10 0.72 0.00 3.27
991 1017 2.278466 CACAGCGCGCAAAAACCA 60.278 55.556 35.10 0.00 0.00 3.67
1004 1030 3.431486 GCAAAAACCAACTCCACCATGAA 60.431 43.478 0.00 0.00 0.00 2.57
1005 1031 4.743348 GCAAAAACCAACTCCACCATGAAT 60.743 41.667 0.00 0.00 0.00 2.57
1027 1053 0.179018 GCACCACAGGAAGGTTCACT 60.179 55.000 0.00 0.00 37.23 3.41
1044 1070 1.244019 ACTTGCCGGTGCCATCTTTC 61.244 55.000 1.90 0.00 36.33 2.62
1602 1628 4.418328 TACGGGTGCATGGTGCCC 62.418 66.667 0.00 0.00 44.23 5.36
1716 1742 0.036952 AGCAGATCAGGAACCACACG 60.037 55.000 0.00 0.00 0.00 4.49
1744 1770 1.610673 GAGGACAGGCTGGTCTCCA 60.611 63.158 20.34 0.00 37.91 3.86
1945 1971 1.371183 CTCCAGCCGTCCAAGTTCA 59.629 57.895 0.00 0.00 0.00 3.18
1946 1972 0.951040 CTCCAGCCGTCCAAGTTCAC 60.951 60.000 0.00 0.00 0.00 3.18
1947 1973 2.317609 CCAGCCGTCCAAGTTCACG 61.318 63.158 0.00 0.00 35.72 4.35
1948 1974 1.300620 CAGCCGTCCAAGTTCACGA 60.301 57.895 5.60 0.00 38.32 4.35
1963 1989 2.554142 TCACGAGCATGGATTGATGAC 58.446 47.619 0.00 0.00 0.00 3.06
1964 1990 2.169144 TCACGAGCATGGATTGATGACT 59.831 45.455 0.00 0.00 0.00 3.41
1965 1991 2.287103 CACGAGCATGGATTGATGACTG 59.713 50.000 0.00 0.00 0.00 3.51
2110 2222 3.243877 CCGCTTGAGTTATCTCGTGATTG 59.756 47.826 5.15 0.00 43.09 2.67
2182 2296 9.518906 CCCTTACAATGTTTTAAGTTTTAACGT 57.481 29.630 0.00 0.00 0.00 3.99
2271 2387 2.145397 TTCTGTCAGTCGGATAGCCT 57.855 50.000 0.00 0.00 34.93 4.58
2427 2544 6.967135 TCGGTGTGACTCTTGTATACATATC 58.033 40.000 6.36 3.20 0.00 1.63
2507 2627 3.739300 GCTCAACATACGTGTGTACACTT 59.261 43.478 25.60 12.95 44.34 3.16
2528 2648 3.799137 ACCTTTATAAACACACGCACG 57.201 42.857 0.00 0.00 0.00 5.34
2535 2655 2.926901 AAACACACGCACGCCCACTA 62.927 55.000 0.00 0.00 0.00 2.74
2551 2671 3.304996 CCCACTATGTCTCTATGAGCACG 60.305 52.174 0.00 0.00 0.00 5.34
2558 2679 3.506067 TGTCTCTATGAGCACGTTGAGAA 59.494 43.478 16.32 7.12 42.20 2.87
2569 2690 1.869690 GTTGAGAAACTGAGCCGGC 59.130 57.895 21.89 21.89 0.00 6.13
2574 2695 0.250901 AGAAACTGAGCCGGCACATT 60.251 50.000 31.54 20.70 0.00 2.71
2589 2710 5.527214 CCGGCACATTATCTTAAGATTGACA 59.473 40.000 22.60 2.38 36.05 3.58
2592 2713 7.967854 CGGCACATTATCTTAAGATTGACAAAA 59.032 33.333 22.60 10.45 36.05 2.44
2644 2765 3.806949 TGTTTCCTCCCACTAAATGCT 57.193 42.857 0.00 0.00 0.00 3.79
2706 2827 3.181445 ACCAGTGGCAAATCTGTGACTTA 60.181 43.478 9.78 0.00 0.00 2.24
2731 2852 5.415961 ACTCTAATGGGCCTAGAATACCAT 58.584 41.667 4.53 0.00 45.18 3.55
2738 2859 3.138468 GGGCCTAGAATACCATTGTCCTT 59.862 47.826 0.84 0.00 0.00 3.36
2745 2866 7.824779 CCTAGAATACCATTGTCCTTATAAGCC 59.175 40.741 6.99 0.62 0.00 4.35
2765 2886 3.730715 GCCTTCAATCACAAGTTTGTTCG 59.269 43.478 0.00 0.00 39.91 3.95
2810 2963 3.988517 GACGCTTTACTATGGAGTATGCC 59.011 47.826 0.00 0.00 37.99 4.40
2811 2964 3.641906 ACGCTTTACTATGGAGTATGCCT 59.358 43.478 0.00 0.00 37.99 4.75
2813 2966 5.162075 CGCTTTACTATGGAGTATGCCTAC 58.838 45.833 0.00 0.00 37.99 3.18
2814 2967 5.047943 CGCTTTACTATGGAGTATGCCTACT 60.048 44.000 0.79 0.79 40.98 2.57
2826 6743 2.502142 TGCCTACTCCTAACGTCTCA 57.498 50.000 0.00 0.00 0.00 3.27
2857 6774 0.111398 GTTCGTTCGTTGGTTCGCTC 60.111 55.000 0.00 0.00 0.00 5.03
2867 6784 2.100603 GTTCGCTCGCTCGCTACT 59.899 61.111 0.00 0.00 0.00 2.57
2882 7401 2.359531 CGCTACTTCCTTTCGATCTCCT 59.640 50.000 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.502263 CGCACACGTCAGATCCAT 57.498 55.556 0.00 0.00 33.53 3.41
31 32 3.926821 GGGGAACGCAGTAATTTCAAA 57.073 42.857 0.00 0.00 45.00 2.69
43 44 3.322828 TCCTACTATATGTTGGGGAACGC 59.677 47.826 0.00 0.00 41.03 4.84
44 45 4.560919 GCTCCTACTATATGTTGGGGAACG 60.561 50.000 8.89 0.00 43.38 3.95
45 46 4.262938 GGCTCCTACTATATGTTGGGGAAC 60.263 50.000 8.89 0.00 43.38 3.62
47 48 3.517612 GGCTCCTACTATATGTTGGGGA 58.482 50.000 8.89 0.00 43.38 4.81
49 50 2.233922 CCGGCTCCTACTATATGTTGGG 59.766 54.545 0.00 0.00 41.03 4.12
51 52 4.079970 TCTCCGGCTCCTACTATATGTTG 58.920 47.826 0.00 0.00 0.00 3.33
52 53 4.383931 TCTCCGGCTCCTACTATATGTT 57.616 45.455 0.00 0.00 0.00 2.71
53 54 4.043059 TCTTCTCCGGCTCCTACTATATGT 59.957 45.833 0.00 0.00 0.00 2.29
54 55 4.590918 TCTTCTCCGGCTCCTACTATATG 58.409 47.826 0.00 0.00 0.00 1.78
55 56 4.931027 TCTTCTCCGGCTCCTACTATAT 57.069 45.455 0.00 0.00 0.00 0.86
56 57 4.506979 CCTTCTTCTCCGGCTCCTACTATA 60.507 50.000 0.00 0.00 0.00 1.31
57 58 3.492337 CTTCTTCTCCGGCTCCTACTAT 58.508 50.000 0.00 0.00 0.00 2.12
58 59 2.423088 CCTTCTTCTCCGGCTCCTACTA 60.423 54.545 0.00 0.00 0.00 1.82
59 60 1.686741 CCTTCTTCTCCGGCTCCTACT 60.687 57.143 0.00 0.00 0.00 2.57
60 61 0.747852 CCTTCTTCTCCGGCTCCTAC 59.252 60.000 0.00 0.00 0.00 3.18
62 63 0.973496 GTCCTTCTTCTCCGGCTCCT 60.973 60.000 0.00 0.00 0.00 3.69
63 64 1.518302 GTCCTTCTTCTCCGGCTCC 59.482 63.158 0.00 0.00 0.00 4.70
66 67 2.184579 CCGTCCTTCTTCTCCGGC 59.815 66.667 0.00 0.00 0.00 6.13
68 69 2.202623 CGCCGTCCTTCTTCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
69 70 1.139947 CTCGCCGTCCTTCTTCTCC 59.860 63.158 0.00 0.00 0.00 3.71
70 71 1.139947 CCTCGCCGTCCTTCTTCTC 59.860 63.158 0.00 0.00 0.00 2.87
71 72 1.304217 TCCTCGCCGTCCTTCTTCT 60.304 57.895 0.00 0.00 0.00 2.85
72 73 1.153804 GTCCTCGCCGTCCTTCTTC 60.154 63.158 0.00 0.00 0.00 2.87
73 74 2.971452 GTCCTCGCCGTCCTTCTT 59.029 61.111 0.00 0.00 0.00 2.52
74 75 3.441290 CGTCCTCGCCGTCCTTCT 61.441 66.667 0.00 0.00 0.00 2.85
75 76 2.772691 ATCGTCCTCGCCGTCCTTC 61.773 63.158 0.00 0.00 36.96 3.46
76 77 2.754658 ATCGTCCTCGCCGTCCTT 60.755 61.111 0.00 0.00 36.96 3.36
77 78 3.518998 CATCGTCCTCGCCGTCCT 61.519 66.667 0.00 0.00 36.96 3.85
78 79 2.734756 GATCATCGTCCTCGCCGTCC 62.735 65.000 0.00 0.00 36.96 4.79
79 80 1.370657 GATCATCGTCCTCGCCGTC 60.371 63.158 0.00 0.00 36.96 4.79
80 81 2.722487 GATCATCGTCCTCGCCGT 59.278 61.111 0.00 0.00 36.96 5.68
82 83 2.049985 CGGATCATCGTCCTCGCC 60.050 66.667 0.00 0.00 36.07 5.54
83 84 1.867919 ATCCGGATCATCGTCCTCGC 61.868 60.000 12.38 0.00 36.07 5.03
85 86 1.248486 TCATCCGGATCATCGTCCTC 58.752 55.000 15.88 0.00 36.07 3.71
86 87 1.930251 ATCATCCGGATCATCGTCCT 58.070 50.000 15.88 0.00 36.07 3.85
87 88 2.492088 TGTATCATCCGGATCATCGTCC 59.508 50.000 15.88 0.00 37.44 4.79
88 89 3.191581 ACTGTATCATCCGGATCATCGTC 59.808 47.826 15.88 2.58 37.44 4.20
89 90 3.157881 ACTGTATCATCCGGATCATCGT 58.842 45.455 15.88 2.88 37.44 3.73
90 91 3.729163 CGACTGTATCATCCGGATCATCG 60.729 52.174 15.88 15.14 37.44 3.84
92 93 2.493675 CCGACTGTATCATCCGGATCAT 59.506 50.000 15.88 10.73 42.49 2.45
94 95 1.402984 GCCGACTGTATCATCCGGATC 60.403 57.143 15.88 3.63 42.49 3.36
95 96 0.603569 GCCGACTGTATCATCCGGAT 59.396 55.000 12.38 12.38 42.49 4.18
97 98 1.371758 CGCCGACTGTATCATCCGG 60.372 63.158 0.00 0.00 42.74 5.14
98 99 0.241213 ATCGCCGACTGTATCATCCG 59.759 55.000 0.00 0.00 0.00 4.18
99 100 1.702886 CATCGCCGACTGTATCATCC 58.297 55.000 0.00 0.00 0.00 3.51
100 101 1.063806 GCATCGCCGACTGTATCATC 58.936 55.000 0.00 0.00 0.00 2.92
103 104 0.594028 TTCGCATCGCCGACTGTATC 60.594 55.000 0.00 0.00 36.90 2.24
104 105 0.595053 CTTCGCATCGCCGACTGTAT 60.595 55.000 0.00 0.00 36.90 2.29
105 106 1.226575 CTTCGCATCGCCGACTGTA 60.227 57.895 0.00 0.00 36.90 2.74
106 107 2.486636 TTCTTCGCATCGCCGACTGT 62.487 55.000 0.00 0.00 36.90 3.55
107 108 1.746727 CTTCTTCGCATCGCCGACTG 61.747 60.000 0.00 0.00 36.90 3.51
108 109 1.517257 CTTCTTCGCATCGCCGACT 60.517 57.895 0.00 0.00 36.90 4.18
110 111 0.802222 CTTCTTCTTCGCATCGCCGA 60.802 55.000 0.00 0.00 35.09 5.54
111 112 1.633171 CTTCTTCTTCGCATCGCCG 59.367 57.895 0.00 0.00 0.00 6.46
112 113 1.432270 CCCTTCTTCTTCGCATCGCC 61.432 60.000 0.00 0.00 0.00 5.54
113 114 0.741221 ACCCTTCTTCTTCGCATCGC 60.741 55.000 0.00 0.00 0.00 4.58
115 116 3.491792 CCTCTACCCTTCTTCTTCGCATC 60.492 52.174 0.00 0.00 0.00 3.91
116 117 2.432510 CCTCTACCCTTCTTCTTCGCAT 59.567 50.000 0.00 0.00 0.00 4.73
117 118 1.825474 CCTCTACCCTTCTTCTTCGCA 59.175 52.381 0.00 0.00 0.00 5.10
118 119 2.100087 CTCCTCTACCCTTCTTCTTCGC 59.900 54.545 0.00 0.00 0.00 4.70
119 120 3.622630 TCTCCTCTACCCTTCTTCTTCG 58.377 50.000 0.00 0.00 0.00 3.79
122 123 5.018374 ACTTTCTCCTCTACCCTTCTTCT 57.982 43.478 0.00 0.00 0.00 2.85
123 124 5.748670 AACTTTCTCCTCTACCCTTCTTC 57.251 43.478 0.00 0.00 0.00 2.87
126 127 5.485209 TGAAACTTTCTCCTCTACCCTTC 57.515 43.478 3.22 0.00 0.00 3.46
127 128 5.132144 TGTTGAAACTTTCTCCTCTACCCTT 59.868 40.000 3.22 0.00 0.00 3.95
128 129 4.658901 TGTTGAAACTTTCTCCTCTACCCT 59.341 41.667 3.22 0.00 0.00 4.34
129 130 4.969484 TGTTGAAACTTTCTCCTCTACCC 58.031 43.478 3.22 0.00 0.00 3.69
130 131 5.106515 GCATGTTGAAACTTTCTCCTCTACC 60.107 44.000 3.22 0.00 0.00 3.18
131 132 5.389935 CGCATGTTGAAACTTTCTCCTCTAC 60.390 44.000 3.22 0.00 0.00 2.59
132 133 4.690748 CGCATGTTGAAACTTTCTCCTCTA 59.309 41.667 3.22 0.00 0.00 2.43
134 135 3.365364 CCGCATGTTGAAACTTTCTCCTC 60.365 47.826 3.22 0.00 0.00 3.71
136 137 2.351738 CCCGCATGTTGAAACTTTCTCC 60.352 50.000 3.22 0.00 0.00 3.71
137 138 2.552315 TCCCGCATGTTGAAACTTTCTC 59.448 45.455 3.22 0.00 0.00 2.87
139 140 3.004315 TCTTCCCGCATGTTGAAACTTTC 59.996 43.478 0.00 0.00 0.00 2.62
140 141 2.955660 TCTTCCCGCATGTTGAAACTTT 59.044 40.909 0.00 0.00 0.00 2.66
142 143 1.880027 GTCTTCCCGCATGTTGAAACT 59.120 47.619 0.00 0.00 0.00 2.66
145 146 0.034198 TCGTCTTCCCGCATGTTGAA 59.966 50.000 0.00 0.00 0.00 2.69
146 147 0.389817 CTCGTCTTCCCGCATGTTGA 60.390 55.000 0.00 0.00 0.00 3.18
147 148 0.670546 ACTCGTCTTCCCGCATGTTG 60.671 55.000 0.00 0.00 0.00 3.33
148 149 0.034896 AACTCGTCTTCCCGCATGTT 59.965 50.000 0.00 0.00 0.00 2.71
150 151 0.670546 ACAACTCGTCTTCCCGCATG 60.671 55.000 0.00 0.00 0.00 4.06
152 153 1.300620 CACAACTCGTCTTCCCGCA 60.301 57.895 0.00 0.00 0.00 5.69
153 154 2.668280 GCACAACTCGTCTTCCCGC 61.668 63.158 0.00 0.00 0.00 6.13
154 155 2.372690 CGCACAACTCGTCTTCCCG 61.373 63.158 0.00 0.00 0.00 5.14
156 157 1.390463 GAATCGCACAACTCGTCTTCC 59.610 52.381 0.00 0.00 0.00 3.46
157 158 2.329379 AGAATCGCACAACTCGTCTTC 58.671 47.619 0.00 0.00 0.00 2.87
159 160 2.440539 AAGAATCGCACAACTCGTCT 57.559 45.000 0.00 0.00 0.00 4.18
160 161 2.411547 CCAAAGAATCGCACAACTCGTC 60.412 50.000 0.00 0.00 0.00 4.20
162 163 1.798223 TCCAAAGAATCGCACAACTCG 59.202 47.619 0.00 0.00 0.00 4.18
163 164 3.751621 CATCCAAAGAATCGCACAACTC 58.248 45.455 0.00 0.00 0.00 3.01
164 165 2.095059 GCATCCAAAGAATCGCACAACT 60.095 45.455 0.00 0.00 0.00 3.16
165 166 2.095059 AGCATCCAAAGAATCGCACAAC 60.095 45.455 0.00 0.00 0.00 3.32
166 167 2.161855 AGCATCCAAAGAATCGCACAA 58.838 42.857 0.00 0.00 0.00 3.33
167 168 1.825090 AGCATCCAAAGAATCGCACA 58.175 45.000 0.00 0.00 0.00 4.57
168 169 3.623060 TCTTAGCATCCAAAGAATCGCAC 59.377 43.478 0.00 0.00 0.00 5.34
169 170 3.872696 TCTTAGCATCCAAAGAATCGCA 58.127 40.909 0.00 0.00 0.00 5.10
170 171 4.274459 ACATCTTAGCATCCAAAGAATCGC 59.726 41.667 0.00 0.00 35.47 4.58
172 173 7.192232 GTCAACATCTTAGCATCCAAAGAATC 58.808 38.462 0.00 0.00 35.47 2.52
173 174 6.096001 GGTCAACATCTTAGCATCCAAAGAAT 59.904 38.462 0.00 0.00 35.47 2.40
174 175 5.415701 GGTCAACATCTTAGCATCCAAAGAA 59.584 40.000 0.00 0.00 35.47 2.52
177 178 4.922206 AGGTCAACATCTTAGCATCCAAA 58.078 39.130 0.00 0.00 0.00 3.28
178 179 4.574674 AGGTCAACATCTTAGCATCCAA 57.425 40.909 0.00 0.00 0.00 3.53
179 180 4.019411 TCAAGGTCAACATCTTAGCATCCA 60.019 41.667 0.00 0.00 0.00 3.41
181 182 6.094603 ACATTCAAGGTCAACATCTTAGCATC 59.905 38.462 0.00 0.00 0.00 3.91
183 184 5.181811 CACATTCAAGGTCAACATCTTAGCA 59.818 40.000 0.00 0.00 0.00 3.49
184 185 5.412594 TCACATTCAAGGTCAACATCTTAGC 59.587 40.000 0.00 0.00 0.00 3.09
186 187 6.998074 AGTTCACATTCAAGGTCAACATCTTA 59.002 34.615 0.00 0.00 0.00 2.10
187 188 5.829924 AGTTCACATTCAAGGTCAACATCTT 59.170 36.000 0.00 0.00 0.00 2.40
188 189 5.380043 AGTTCACATTCAAGGTCAACATCT 58.620 37.500 0.00 0.00 0.00 2.90
189 190 5.471456 AGAGTTCACATTCAAGGTCAACATC 59.529 40.000 0.00 0.00 0.00 3.06
191 192 4.780815 AGAGTTCACATTCAAGGTCAACA 58.219 39.130 0.00 0.00 0.00 3.33
192 193 5.757850 AAGAGTTCACATTCAAGGTCAAC 57.242 39.130 0.00 0.00 0.00 3.18
193 194 5.885352 TCAAAGAGTTCACATTCAAGGTCAA 59.115 36.000 0.00 0.00 0.00 3.18
195 196 6.377327 TTCAAAGAGTTCACATTCAAGGTC 57.623 37.500 0.00 0.00 0.00 3.85
196 197 6.736794 GCATTCAAAGAGTTCACATTCAAGGT 60.737 38.462 0.00 0.00 0.00 3.50
199 200 5.302568 AGGCATTCAAAGAGTTCACATTCAA 59.697 36.000 0.00 0.00 0.00 2.69
200 201 4.828939 AGGCATTCAAAGAGTTCACATTCA 59.171 37.500 0.00 0.00 0.00 2.57
201 202 5.382618 AGGCATTCAAAGAGTTCACATTC 57.617 39.130 0.00 0.00 0.00 2.67
202 203 5.106555 CGTAGGCATTCAAAGAGTTCACATT 60.107 40.000 0.00 0.00 0.00 2.71
203 204 4.393062 CGTAGGCATTCAAAGAGTTCACAT 59.607 41.667 0.00 0.00 0.00 3.21
205 206 3.424962 GCGTAGGCATTCAAAGAGTTCAC 60.425 47.826 1.75 0.00 39.62 3.18
206 207 2.742053 GCGTAGGCATTCAAAGAGTTCA 59.258 45.455 1.75 0.00 39.62 3.18
207 208 2.742053 TGCGTAGGCATTCAAAGAGTTC 59.258 45.455 5.89 0.00 46.21 3.01
208 209 2.778299 TGCGTAGGCATTCAAAGAGTT 58.222 42.857 5.89 0.00 46.21 3.01
209 210 2.472695 TGCGTAGGCATTCAAAGAGT 57.527 45.000 5.89 0.00 46.21 3.24
220 221 2.874701 ACATGATCATTCTTGCGTAGGC 59.125 45.455 5.16 0.00 40.52 3.93
222 223 8.982685 ACTAATTACATGATCATTCTTGCGTAG 58.017 33.333 5.16 5.03 31.80 3.51
223 224 8.887036 ACTAATTACATGATCATTCTTGCGTA 57.113 30.769 5.16 1.32 31.80 4.42
224 225 7.041780 GGACTAATTACATGATCATTCTTGCGT 60.042 37.037 5.16 2.35 31.80 5.24
226 227 7.293745 CGGACTAATTACATGATCATTCTTGC 58.706 38.462 5.16 0.00 31.80 4.01
227 228 7.172190 AGCGGACTAATTACATGATCATTCTTG 59.828 37.037 5.16 0.00 34.15 3.02
228 229 7.220030 AGCGGACTAATTACATGATCATTCTT 58.780 34.615 5.16 0.19 0.00 2.52
229 230 6.763355 AGCGGACTAATTACATGATCATTCT 58.237 36.000 5.16 0.00 0.00 2.40
231 232 7.931407 TGTTAGCGGACTAATTACATGATCATT 59.069 33.333 5.16 0.66 40.43 2.57
232 233 7.441836 TGTTAGCGGACTAATTACATGATCAT 58.558 34.615 1.18 1.18 40.43 2.45
233 234 6.811954 TGTTAGCGGACTAATTACATGATCA 58.188 36.000 0.00 0.00 40.43 2.92
234 235 7.145985 TCTGTTAGCGGACTAATTACATGATC 58.854 38.462 0.00 0.00 40.43 2.92
235 236 7.050970 TCTGTTAGCGGACTAATTACATGAT 57.949 36.000 0.00 0.00 40.43 2.45
236 237 6.459670 TCTGTTAGCGGACTAATTACATGA 57.540 37.500 0.00 0.00 40.43 3.07
238 239 6.817184 ACATCTGTTAGCGGACTAATTACAT 58.183 36.000 0.00 0.00 40.43 2.29
239 240 6.216801 ACATCTGTTAGCGGACTAATTACA 57.783 37.500 0.00 0.00 40.43 2.41
240 241 6.979238 AGAACATCTGTTAGCGGACTAATTAC 59.021 38.462 0.00 0.00 40.43 1.89
242 243 5.978814 AGAACATCTGTTAGCGGACTAATT 58.021 37.500 0.00 0.00 40.43 1.40
243 244 5.599999 AGAACATCTGTTAGCGGACTAAT 57.400 39.130 0.00 0.00 40.43 1.73
244 245 5.450137 GCTAGAACATCTGTTAGCGGACTAA 60.450 44.000 0.00 0.00 38.56 2.24
245 246 4.036498 GCTAGAACATCTGTTAGCGGACTA 59.964 45.833 0.00 0.00 38.56 2.59
246 247 3.181485 GCTAGAACATCTGTTAGCGGACT 60.181 47.826 0.00 0.00 38.56 3.85
247 248 3.117046 GCTAGAACATCTGTTAGCGGAC 58.883 50.000 0.00 0.00 38.56 4.79
248 249 3.438297 GCTAGAACATCTGTTAGCGGA 57.562 47.619 0.00 0.00 38.56 5.54
251 252 1.861575 GCCGCTAGAACATCTGTTAGC 59.138 52.381 7.47 7.47 38.56 3.09
253 254 2.758423 TCTGCCGCTAGAACATCTGTTA 59.242 45.455 0.00 0.00 38.56 2.41
254 255 1.550524 TCTGCCGCTAGAACATCTGTT 59.449 47.619 0.00 0.00 41.64 3.16
255 256 1.186200 TCTGCCGCTAGAACATCTGT 58.814 50.000 0.00 0.00 0.00 3.41
258 259 2.893637 TCTTTCTGCCGCTAGAACATC 58.106 47.619 0.00 0.00 36.48 3.06
259 260 3.462021 GATCTTTCTGCCGCTAGAACAT 58.538 45.455 0.00 2.25 36.48 2.71
260 261 2.735444 CGATCTTTCTGCCGCTAGAACA 60.735 50.000 0.00 0.00 36.48 3.18
262 263 1.202417 CCGATCTTTCTGCCGCTAGAA 60.202 52.381 0.00 0.00 35.02 2.10
263 264 0.385751 CCGATCTTTCTGCCGCTAGA 59.614 55.000 0.00 0.00 0.00 2.43
264 265 0.103208 ACCGATCTTTCTGCCGCTAG 59.897 55.000 0.00 0.00 0.00 3.42
265 266 0.535335 AACCGATCTTTCTGCCGCTA 59.465 50.000 0.00 0.00 0.00 4.26
266 267 1.021390 CAACCGATCTTTCTGCCGCT 61.021 55.000 0.00 0.00 0.00 5.52
267 268 1.425428 CAACCGATCTTTCTGCCGC 59.575 57.895 0.00 0.00 0.00 6.53
270 271 1.425428 CGCCAACCGATCTTTCTGC 59.575 57.895 0.00 0.00 40.02 4.26
272 273 1.745489 GCCGCCAACCGATCTTTCT 60.745 57.895 0.00 0.00 40.02 2.52
273 274 2.791927 GCCGCCAACCGATCTTTC 59.208 61.111 0.00 0.00 40.02 2.62
274 275 3.124921 CGCCGCCAACCGATCTTT 61.125 61.111 0.00 0.00 40.02 2.52
288 289 4.467084 TCCTCATTGTCCGGCGCC 62.467 66.667 19.07 19.07 0.00 6.53
289 290 3.195698 GTCCTCATTGTCCGGCGC 61.196 66.667 0.00 0.00 0.00 6.53
290 291 2.885644 CGTCCTCATTGTCCGGCG 60.886 66.667 0.00 0.00 0.00 6.46
291 292 3.195698 GCGTCCTCATTGTCCGGC 61.196 66.667 0.00 0.00 0.00 6.13
294 295 0.460284 ATGTCGCGTCCTCATTGTCC 60.460 55.000 5.77 0.00 0.00 4.02
295 296 0.647410 CATGTCGCGTCCTCATTGTC 59.353 55.000 5.77 0.00 0.00 3.18
296 297 0.740868 CCATGTCGCGTCCTCATTGT 60.741 55.000 5.77 0.00 0.00 2.71
298 299 1.153369 CCCATGTCGCGTCCTCATT 60.153 57.895 5.77 0.00 0.00 2.57
299 300 2.501128 CCCATGTCGCGTCCTCAT 59.499 61.111 5.77 4.57 0.00 2.90
300 301 4.451150 GCCCATGTCGCGTCCTCA 62.451 66.667 5.77 2.13 0.00 3.86
307 308 1.956170 CATAGACCGCCCATGTCGC 60.956 63.158 0.00 0.00 37.80 5.19
308 309 1.956170 GCATAGACCGCCCATGTCG 60.956 63.158 0.00 0.00 37.80 4.35
309 310 1.956170 CGCATAGACCGCCCATGTC 60.956 63.158 0.00 0.00 0.00 3.06
311 312 2.666190 CCGCATAGACCGCCCATG 60.666 66.667 0.00 0.00 0.00 3.66
318 319 2.962253 GTCGCTGCCGCATAGACC 60.962 66.667 14.14 1.64 35.30 3.85
319 320 3.323136 CGTCGCTGCCGCATAGAC 61.323 66.667 14.78 14.78 35.30 2.59
320 321 3.514362 TCGTCGCTGCCGCATAGA 61.514 61.111 0.00 0.00 35.30 1.98
322 323 4.123009 TGTCGTCGCTGCCGCATA 62.123 61.111 0.00 0.00 35.30 3.14
328 329 4.664677 AGGTGGTGTCGTCGCTGC 62.665 66.667 0.00 0.00 0.00 5.25
331 332 2.028484 TCAAGGTGGTGTCGTCGC 59.972 61.111 0.00 0.00 0.00 5.19
332 333 1.663702 GGTCAAGGTGGTGTCGTCG 60.664 63.158 0.00 0.00 0.00 5.12
333 334 0.600255 CTGGTCAAGGTGGTGTCGTC 60.600 60.000 0.00 0.00 0.00 4.20
334 335 1.445942 CTGGTCAAGGTGGTGTCGT 59.554 57.895 0.00 0.00 0.00 4.34
336 337 1.073199 CCCTGGTCAAGGTGGTGTC 59.927 63.158 0.00 0.00 45.78 3.67
337 338 1.385347 TCCCTGGTCAAGGTGGTGT 60.385 57.895 0.00 0.00 45.78 4.16
339 340 2.529744 GCTCCCTGGTCAAGGTGGT 61.530 63.158 0.00 0.00 45.78 4.16
340 341 2.352805 GCTCCCTGGTCAAGGTGG 59.647 66.667 0.00 0.00 45.78 4.61
341 342 1.002868 CTGCTCCCTGGTCAAGGTG 60.003 63.158 0.00 0.00 45.78 4.00
343 344 1.197430 AGTCTGCTCCCTGGTCAAGG 61.197 60.000 0.00 0.00 46.94 3.61
344 345 0.036577 CAGTCTGCTCCCTGGTCAAG 60.037 60.000 0.00 0.00 0.00 3.02
345 346 2.061220 CAGTCTGCTCCCTGGTCAA 58.939 57.895 0.00 0.00 0.00 3.18
357 358 1.001764 TGGCAATCCCAGCAGTCTG 60.002 57.895 0.00 0.00 39.18 3.51
358 359 3.499406 TGGCAATCCCAGCAGTCT 58.501 55.556 0.00 0.00 39.18 3.24
374 375 0.107017 AATCTTCTGCCCACCGGATG 60.107 55.000 9.46 2.15 0.00 3.51
375 376 0.107017 CAATCTTCTGCCCACCGGAT 60.107 55.000 9.46 0.00 0.00 4.18
377 378 2.409870 GCAATCTTCTGCCCACCGG 61.410 63.158 0.00 0.00 36.25 5.28
378 379 1.675310 TGCAATCTTCTGCCCACCG 60.675 57.895 0.00 0.00 41.90 4.94
379 380 1.885871 GTGCAATCTTCTGCCCACC 59.114 57.895 0.00 0.00 41.90 4.61
380 381 1.503542 CGTGCAATCTTCTGCCCAC 59.496 57.895 0.00 0.00 41.90 4.61
382 383 1.377202 TCCGTGCAATCTTCTGCCC 60.377 57.895 0.00 0.00 41.90 5.36
384 385 0.445436 CAGTCCGTGCAATCTTCTGC 59.555 55.000 0.00 0.00 42.95 4.26
398 399 1.523758 AAAACATCAGTCCGCAGTCC 58.476 50.000 0.00 0.00 0.00 3.85
419 420 8.792633 CCTTAGTTTTTACATGTCTGAATCCAA 58.207 33.333 0.00 0.00 0.00 3.53
420 421 8.160765 TCCTTAGTTTTTACATGTCTGAATCCA 58.839 33.333 0.00 0.00 0.00 3.41
421 422 8.451748 GTCCTTAGTTTTTACATGTCTGAATCC 58.548 37.037 0.00 0.00 0.00 3.01
423 424 8.784043 GTGTCCTTAGTTTTTACATGTCTGAAT 58.216 33.333 0.00 0.00 0.00 2.57
424 425 7.771361 TGTGTCCTTAGTTTTTACATGTCTGAA 59.229 33.333 0.00 0.00 0.00 3.02
426 427 7.490962 TGTGTCCTTAGTTTTTACATGTCTG 57.509 36.000 0.00 0.00 0.00 3.51
427 428 8.099364 CATGTGTCCTTAGTTTTTACATGTCT 57.901 34.615 0.00 0.00 39.15 3.41
430 431 8.099364 AGACATGTGTCCTTAGTTTTTACATG 57.901 34.615 1.15 11.56 45.85 3.21
431 432 8.691661 AAGACATGTGTCCTTAGTTTTTACAT 57.308 30.769 1.15 0.00 45.85 2.29
432 433 8.514330 AAAGACATGTGTCCTTAGTTTTTACA 57.486 30.769 1.15 0.00 45.85 2.41
433 434 9.797556 AAAAAGACATGTGTCCTTAGTTTTTAC 57.202 29.630 1.15 0.00 45.85 2.01
457 458 6.561737 TTGTATGCCGATCACAACTAAAAA 57.438 33.333 0.00 0.00 0.00 1.94
458 459 6.597672 AGATTGTATGCCGATCACAACTAAAA 59.402 34.615 0.00 0.00 36.54 1.52
461 462 5.049828 CAGATTGTATGCCGATCACAACTA 58.950 41.667 0.00 0.00 36.54 2.24
463 464 3.002656 CCAGATTGTATGCCGATCACAAC 59.997 47.826 0.00 0.00 36.54 3.32
464 465 3.205338 CCAGATTGTATGCCGATCACAA 58.795 45.455 0.00 0.00 36.54 3.33
466 467 1.532868 GCCAGATTGTATGCCGATCAC 59.467 52.381 0.00 0.00 36.54 3.06
467 468 1.873486 CGCCAGATTGTATGCCGATCA 60.873 52.381 0.00 0.00 36.54 2.92
468 469 0.792640 CGCCAGATTGTATGCCGATC 59.207 55.000 0.00 0.00 34.55 3.69
469 470 1.230635 GCGCCAGATTGTATGCCGAT 61.231 55.000 0.00 0.00 0.00 4.18
470 471 1.887242 GCGCCAGATTGTATGCCGA 60.887 57.895 0.00 0.00 0.00 5.54
471 472 2.633657 GCGCCAGATTGTATGCCG 59.366 61.111 0.00 0.00 0.00 5.69
473 474 0.589729 CAACGCGCCAGATTGTATGC 60.590 55.000 5.73 0.00 0.00 3.14
475 476 0.726827 CACAACGCGCCAGATTGTAT 59.273 50.000 5.73 0.00 34.84 2.29
477 478 2.945984 CACAACGCGCCAGATTGT 59.054 55.556 5.73 6.05 37.02 2.71
478 479 2.502510 GCACAACGCGCCAGATTG 60.503 61.111 5.73 5.28 0.00 2.67
487 488 3.554692 CTCCGATCCGCACAACGC 61.555 66.667 0.00 0.00 41.76 4.84
488 489 1.289109 AAACTCCGATCCGCACAACG 61.289 55.000 0.00 0.00 43.15 4.10
490 491 2.684001 ATAAACTCCGATCCGCACAA 57.316 45.000 0.00 0.00 0.00 3.33
491 492 2.675844 CAAATAAACTCCGATCCGCACA 59.324 45.455 0.00 0.00 0.00 4.57
493 494 3.254470 TCAAATAAACTCCGATCCGCA 57.746 42.857 0.00 0.00 0.00 5.69
495 496 6.781138 TCAAATTCAAATAAACTCCGATCCG 58.219 36.000 0.00 0.00 0.00 4.18
496 497 8.980143 TTTCAAATTCAAATAAACTCCGATCC 57.020 30.769 0.00 0.00 0.00 3.36
499 500 8.707839 GCAATTTCAAATTCAAATAAACTCCGA 58.292 29.630 0.00 0.00 0.00 4.55
500 501 8.711457 AGCAATTTCAAATTCAAATAAACTCCG 58.289 29.630 0.00 0.00 0.00 4.63
511 512 7.096106 CGCAAGTAAAGAGCAATTTCAAATTCA 60.096 33.333 0.00 0.00 0.00 2.57
513 514 6.146021 CCGCAAGTAAAGAGCAATTTCAAATT 59.854 34.615 0.00 0.00 0.00 1.82
514 515 5.634859 CCGCAAGTAAAGAGCAATTTCAAAT 59.365 36.000 0.00 0.00 0.00 2.32
516 517 4.277174 TCCGCAAGTAAAGAGCAATTTCAA 59.723 37.500 0.00 0.00 0.00 2.69
518 519 4.159120 GTCCGCAAGTAAAGAGCAATTTC 58.841 43.478 0.00 0.00 0.00 2.17
519 520 3.568007 TGTCCGCAAGTAAAGAGCAATTT 59.432 39.130 0.00 0.00 0.00 1.82
520 521 3.146066 TGTCCGCAAGTAAAGAGCAATT 58.854 40.909 0.00 0.00 0.00 2.32
521 522 2.778299 TGTCCGCAAGTAAAGAGCAAT 58.222 42.857 0.00 0.00 0.00 3.56
522 523 2.248280 TGTCCGCAAGTAAAGAGCAA 57.752 45.000 0.00 0.00 0.00 3.91
524 525 6.531948 CCTATATATGTCCGCAAGTAAAGAGC 59.468 42.308 0.00 0.00 0.00 4.09
525 526 7.827701 TCCTATATATGTCCGCAAGTAAAGAG 58.172 38.462 0.00 0.00 0.00 2.85
527 528 9.737427 CTATCCTATATATGTCCGCAAGTAAAG 57.263 37.037 0.00 0.00 0.00 1.85
529 530 7.287005 CCCTATCCTATATATGTCCGCAAGTAA 59.713 40.741 0.00 0.00 0.00 2.24
531 532 5.598830 CCCTATCCTATATATGTCCGCAAGT 59.401 44.000 0.00 0.00 0.00 3.16
532 533 5.598830 ACCCTATCCTATATATGTCCGCAAG 59.401 44.000 0.00 0.00 0.00 4.01
533 534 5.525484 ACCCTATCCTATATATGTCCGCAA 58.475 41.667 0.00 0.00 0.00 4.85
535 536 5.221461 CCAACCCTATCCTATATATGTCCGC 60.221 48.000 0.00 0.00 0.00 5.54
538 539 8.643324 GTCATCCAACCCTATCCTATATATGTC 58.357 40.741 0.00 0.00 0.00 3.06
540 541 7.505923 TCGTCATCCAACCCTATCCTATATATG 59.494 40.741 0.00 0.00 0.00 1.78
541 542 7.506261 GTCGTCATCCAACCCTATCCTATATAT 59.494 40.741 0.00 0.00 0.00 0.86
543 544 5.657302 GTCGTCATCCAACCCTATCCTATAT 59.343 44.000 0.00 0.00 0.00 0.86
544 545 5.014858 GTCGTCATCCAACCCTATCCTATA 58.985 45.833 0.00 0.00 0.00 1.31
545 546 3.833070 GTCGTCATCCAACCCTATCCTAT 59.167 47.826 0.00 0.00 0.00 2.57
547 548 2.040178 GTCGTCATCCAACCCTATCCT 58.960 52.381 0.00 0.00 0.00 3.24
549 550 2.040178 AGGTCGTCATCCAACCCTATC 58.960 52.381 0.00 0.00 33.33 2.08
550 551 2.176247 AGGTCGTCATCCAACCCTAT 57.824 50.000 0.00 0.00 33.33 2.57
551 552 1.829222 GAAGGTCGTCATCCAACCCTA 59.171 52.381 0.00 0.00 33.33 3.53
552 553 0.613777 GAAGGTCGTCATCCAACCCT 59.386 55.000 0.00 0.00 33.33 4.34
553 554 0.613777 AGAAGGTCGTCATCCAACCC 59.386 55.000 0.00 0.00 33.33 4.11
554 555 1.002087 ACAGAAGGTCGTCATCCAACC 59.998 52.381 0.00 0.00 0.00 3.77
556 557 4.819105 AATACAGAAGGTCGTCATCCAA 57.181 40.909 0.00 0.00 0.00 3.53
558 559 4.330074 CACAAATACAGAAGGTCGTCATCC 59.670 45.833 0.00 0.00 0.00 3.51
559 560 4.929808 ACACAAATACAGAAGGTCGTCATC 59.070 41.667 0.00 0.00 0.00 2.92
560 561 4.894784 ACACAAATACAGAAGGTCGTCAT 58.105 39.130 0.00 0.00 0.00 3.06
561 562 4.304110 GACACAAATACAGAAGGTCGTCA 58.696 43.478 0.00 0.00 0.00 4.35
562 563 3.678548 GGACACAAATACAGAAGGTCGTC 59.321 47.826 0.00 0.00 0.00 4.20
563 564 3.660865 GGACACAAATACAGAAGGTCGT 58.339 45.455 0.00 0.00 0.00 4.34
565 566 2.415512 GCGGACACAAATACAGAAGGTC 59.584 50.000 0.00 0.00 0.00 3.85
566 567 2.224426 TGCGGACACAAATACAGAAGGT 60.224 45.455 0.00 0.00 0.00 3.50
567 568 2.416547 CTGCGGACACAAATACAGAAGG 59.583 50.000 0.00 0.00 0.00 3.46
570 571 2.299013 AGTCTGCGGACACAAATACAGA 59.701 45.455 27.02 0.00 44.36 3.41
572 573 2.831685 AGTCTGCGGACACAAATACA 57.168 45.000 27.02 0.00 44.36 2.29
573 574 5.109903 AGATTAGTCTGCGGACACAAATAC 58.890 41.667 27.02 15.11 44.36 1.89
574 575 5.339008 AGATTAGTCTGCGGACACAAATA 57.661 39.130 27.02 7.92 44.36 1.40
575 576 4.207891 AGATTAGTCTGCGGACACAAAT 57.792 40.909 27.02 20.91 44.36 2.32
579 580 3.182967 CAGAAGATTAGTCTGCGGACAC 58.817 50.000 27.02 14.59 44.36 3.67
580 581 2.826128 ACAGAAGATTAGTCTGCGGACA 59.174 45.455 27.02 8.35 45.35 4.02
581 582 3.440228 GACAGAAGATTAGTCTGCGGAC 58.560 50.000 18.39 18.39 45.35 4.79
584 585 3.182967 GTGGACAGAAGATTAGTCTGCG 58.817 50.000 1.41 0.00 45.35 5.18
585 586 3.182967 CGTGGACAGAAGATTAGTCTGC 58.817 50.000 1.41 0.00 45.35 4.26
587 588 3.444388 GTCCGTGGACAGAAGATTAGTCT 59.556 47.826 14.10 0.00 44.02 3.24
588 589 3.771798 GTCCGTGGACAGAAGATTAGTC 58.228 50.000 14.10 0.00 44.02 2.59
589 590 3.870633 GTCCGTGGACAGAAGATTAGT 57.129 47.619 14.10 0.00 44.02 2.24
600 601 2.509336 CCGCATCTGTCCGTGGAC 60.509 66.667 12.17 12.17 44.77 4.02
601 602 3.770040 CCCGCATCTGTCCGTGGA 61.770 66.667 0.00 0.00 34.58 4.02
603 604 2.202797 CTCCCGCATCTGTCCGTG 60.203 66.667 0.00 0.00 0.00 4.94
604 605 1.541310 TTTCTCCCGCATCTGTCCGT 61.541 55.000 0.00 0.00 0.00 4.69
607 608 4.394920 TGTAAATTTTCTCCCGCATCTGTC 59.605 41.667 0.00 0.00 0.00 3.51
608 609 4.331968 TGTAAATTTTCTCCCGCATCTGT 58.668 39.130 0.00 0.00 0.00 3.41
609 610 4.635765 TCTGTAAATTTTCTCCCGCATCTG 59.364 41.667 0.00 0.00 0.00 2.90
610 611 4.843728 TCTGTAAATTTTCTCCCGCATCT 58.156 39.130 0.00 0.00 0.00 2.90
611 612 5.757850 ATCTGTAAATTTTCTCCCGCATC 57.242 39.130 0.00 0.00 0.00 3.91
612 613 6.591935 TCTATCTGTAAATTTTCTCCCGCAT 58.408 36.000 0.00 0.00 0.00 4.73
614 615 7.308049 GGAATCTATCTGTAAATTTTCTCCCGC 60.308 40.741 0.00 0.00 0.00 6.13
616 617 8.221251 AGGGAATCTATCTGTAAATTTTCTCCC 58.779 37.037 0.00 1.46 0.00 4.30
617 618 9.634021 AAGGGAATCTATCTGTAAATTTTCTCC 57.366 33.333 0.00 0.00 0.00 3.71
644 645 9.389570 GCGTGTCTTTTGTTGTACTATTAAAAT 57.610 29.630 0.00 0.00 0.00 1.82
645 646 8.396390 TGCGTGTCTTTTGTTGTACTATTAAAA 58.604 29.630 0.00 0.00 0.00 1.52
646 647 7.851963 GTGCGTGTCTTTTGTTGTACTATTAAA 59.148 33.333 0.00 0.00 0.00 1.52
647 648 7.011202 TGTGCGTGTCTTTTGTTGTACTATTAA 59.989 33.333 0.00 0.00 0.00 1.40
648 649 6.479331 TGTGCGTGTCTTTTGTTGTACTATTA 59.521 34.615 0.00 0.00 0.00 0.98
651 652 4.182339 TGTGCGTGTCTTTTGTTGTACTA 58.818 39.130 0.00 0.00 0.00 1.82
653 654 3.350912 CTGTGCGTGTCTTTTGTTGTAC 58.649 45.455 0.00 0.00 0.00 2.90
654 655 2.223157 GCTGTGCGTGTCTTTTGTTGTA 60.223 45.455 0.00 0.00 0.00 2.41
655 656 1.467374 GCTGTGCGTGTCTTTTGTTGT 60.467 47.619 0.00 0.00 0.00 3.32
656 657 1.191096 GCTGTGCGTGTCTTTTGTTG 58.809 50.000 0.00 0.00 0.00 3.33
658 659 1.094785 AAGCTGTGCGTGTCTTTTGT 58.905 45.000 0.00 0.00 0.00 2.83
659 660 1.469917 CAAGCTGTGCGTGTCTTTTG 58.530 50.000 0.00 0.00 33.67 2.44
660 661 0.248621 GCAAGCTGTGCGTGTCTTTT 60.249 50.000 7.24 0.00 45.10 2.27
661 662 1.356624 GCAAGCTGTGCGTGTCTTT 59.643 52.632 7.24 0.00 45.10 2.52
662 663 3.025619 GCAAGCTGTGCGTGTCTT 58.974 55.556 7.24 0.00 45.10 3.01
670 671 2.967459 TCAATAACACGCAAGCTGTG 57.033 45.000 12.88 12.88 45.62 3.66
671 672 3.138304 TCTTCAATAACACGCAAGCTGT 58.862 40.909 0.00 0.00 45.62 4.40
672 673 3.811722 TCTTCAATAACACGCAAGCTG 57.188 42.857 0.00 0.00 45.62 4.24
674 675 5.881637 TTTTTCTTCAATAACACGCAAGC 57.118 34.783 0.00 0.00 45.62 4.01
703 704 6.212791 ACAATGCTACTTGACCTAGGAAACTA 59.787 38.462 17.98 2.83 43.67 2.24
704 705 9.631580 GGACAATGCTACTTGACCTAGGAAACT 62.632 44.444 17.98 0.00 37.77 2.66
705 706 5.246307 ACAATGCTACTTGACCTAGGAAAC 58.754 41.667 17.98 7.09 0.00 2.78
706 707 5.488341 GACAATGCTACTTGACCTAGGAAA 58.512 41.667 17.98 8.61 0.00 3.13
707 708 4.081087 GGACAATGCTACTTGACCTAGGAA 60.081 45.833 17.98 0.00 37.77 3.36
710 711 4.081420 ACAGGACAATGCTACTTGACCTAG 60.081 45.833 14.10 11.88 45.41 3.02
711 712 3.838317 ACAGGACAATGCTACTTGACCTA 59.162 43.478 14.10 0.00 45.41 3.08
713 714 3.059352 ACAGGACAATGCTACTTGACC 57.941 47.619 7.33 7.33 40.03 4.02
714 715 5.479306 TCTTACAGGACAATGCTACTTGAC 58.521 41.667 2.02 0.00 0.00 3.18
715 716 5.738619 TCTTACAGGACAATGCTACTTGA 57.261 39.130 2.02 0.00 0.00 3.02
717 718 5.013183 AGGTTCTTACAGGACAATGCTACTT 59.987 40.000 0.00 0.00 0.00 2.24
718 719 4.532521 AGGTTCTTACAGGACAATGCTACT 59.467 41.667 0.00 0.00 0.00 2.57
719 720 4.833390 AGGTTCTTACAGGACAATGCTAC 58.167 43.478 0.00 0.00 0.00 3.58
721 722 4.080863 CCTAGGTTCTTACAGGACAATGCT 60.081 45.833 0.00 0.00 0.00 3.79
722 723 4.192317 CCTAGGTTCTTACAGGACAATGC 58.808 47.826 0.00 0.00 0.00 3.56
724 725 3.780850 CCCCTAGGTTCTTACAGGACAAT 59.219 47.826 8.29 0.00 0.00 2.71
725 726 3.178865 CCCCTAGGTTCTTACAGGACAA 58.821 50.000 8.29 0.00 0.00 3.18
726 727 2.829023 CCCCTAGGTTCTTACAGGACA 58.171 52.381 8.29 0.00 0.00 4.02
741 742 0.941963 ATCTGCTACTCCCACCCCTA 59.058 55.000 0.00 0.00 0.00 3.53
742 743 0.941963 TATCTGCTACTCCCACCCCT 59.058 55.000 0.00 0.00 0.00 4.79
743 744 2.031495 ATATCTGCTACTCCCACCCC 57.969 55.000 0.00 0.00 0.00 4.95
744 745 3.244596 GGAAATATCTGCTACTCCCACCC 60.245 52.174 0.00 0.00 0.00 4.61
745 746 3.244596 GGGAAATATCTGCTACTCCCACC 60.245 52.174 0.00 0.00 41.91 4.61
747 748 2.979678 GGGGAAATATCTGCTACTCCCA 59.020 50.000 7.24 0.00 43.76 4.37
748 749 2.306219 GGGGGAAATATCTGCTACTCCC 59.694 54.545 0.00 0.00 41.63 4.30
749 750 2.979678 TGGGGGAAATATCTGCTACTCC 59.020 50.000 0.00 0.00 0.00 3.85
750 751 4.103311 ACTTGGGGGAAATATCTGCTACTC 59.897 45.833 0.00 0.00 0.00 2.59
751 752 4.047883 ACTTGGGGGAAATATCTGCTACT 58.952 43.478 0.00 0.00 0.00 2.57
753 754 5.224441 ACTACTTGGGGGAAATATCTGCTA 58.776 41.667 0.00 0.00 0.00 3.49
754 755 4.047883 ACTACTTGGGGGAAATATCTGCT 58.952 43.478 0.00 0.00 0.00 4.24
755 756 4.439253 ACTACTTGGGGGAAATATCTGC 57.561 45.455 0.00 0.00 0.00 4.26
757 758 7.602868 ACTACTACTACTTGGGGGAAATATCT 58.397 38.462 0.00 0.00 0.00 1.98
758 759 7.852550 ACTACTACTACTTGGGGGAAATATC 57.147 40.000 0.00 0.00 0.00 1.63
759 760 7.454066 GCTACTACTACTACTTGGGGGAAATAT 59.546 40.741 0.00 0.00 0.00 1.28
760 761 6.779539 GCTACTACTACTACTTGGGGGAAATA 59.220 42.308 0.00 0.00 0.00 1.40
761 762 5.601729 GCTACTACTACTACTTGGGGGAAAT 59.398 44.000 0.00 0.00 0.00 2.17
765 766 3.229293 GGCTACTACTACTACTTGGGGG 58.771 54.545 0.00 0.00 0.00 5.40
766 767 3.907221 TGGCTACTACTACTACTTGGGG 58.093 50.000 0.00 0.00 0.00 4.96
833 839 4.148825 CCTTAGCTCGCGCCTGGT 62.149 66.667 0.00 2.63 36.60 4.00
837 843 4.189188 TCGACCTTAGCTCGCGCC 62.189 66.667 0.00 0.00 36.60 6.53
859 865 1.203287 GGATTTGCTTCCTGTTGGCTC 59.797 52.381 0.00 0.00 32.68 4.70
868 874 1.923356 TGACCTTGGGATTTGCTTCC 58.077 50.000 0.00 0.00 34.83 3.46
897 903 2.094649 GTCTACTGCCTTTGCGTAGAGT 60.095 50.000 14.72 1.60 45.34 3.24
942 948 1.671742 CAGAGGTGTGGCGTAGGTT 59.328 57.895 0.00 0.00 0.00 3.50
982 1008 2.102252 TCATGGTGGAGTTGGTTTTTGC 59.898 45.455 0.00 0.00 0.00 3.68
990 1016 0.734889 GCGGATTCATGGTGGAGTTG 59.265 55.000 0.00 0.00 0.00 3.16
991 1017 0.327924 TGCGGATTCATGGTGGAGTT 59.672 50.000 0.00 0.00 0.00 3.01
1004 1030 1.779061 AACCTTCCTGTGGTGCGGAT 61.779 55.000 0.00 0.00 37.93 4.18
1005 1031 2.391724 GAACCTTCCTGTGGTGCGGA 62.392 60.000 0.00 0.00 37.93 5.54
1027 1053 2.331893 CGAAAGATGGCACCGGCAA 61.332 57.895 0.00 0.00 42.43 4.52
1059 1085 4.847444 GCGAGGGGAAGCAGGAGC 62.847 72.222 0.00 0.00 42.56 4.70
1104 1130 1.012486 GGGCGAACTCGTTGTGGTAG 61.012 60.000 0.51 0.00 42.22 3.18
1692 1718 1.880340 GTTCCTGATCTGCTCCGCG 60.880 63.158 0.00 0.00 0.00 6.46
1698 1724 1.021390 CCGTGTGGTTCCTGATCTGC 61.021 60.000 0.00 0.00 0.00 4.26
1744 1770 2.426023 GGCACCTCTGAACCACGT 59.574 61.111 0.00 0.00 0.00 4.49
1896 1922 4.049186 TGAAGTTGAAGTACTTGAGCGTC 58.951 43.478 14.14 14.70 38.43 5.19
1945 1971 2.558378 CAGTCATCAATCCATGCTCGT 58.442 47.619 0.00 0.00 0.00 4.18
1946 1972 1.871676 CCAGTCATCAATCCATGCTCG 59.128 52.381 0.00 0.00 0.00 5.03
1947 1973 2.228059 CCCAGTCATCAATCCATGCTC 58.772 52.381 0.00 0.00 0.00 4.26
1948 1974 1.567649 ACCCAGTCATCAATCCATGCT 59.432 47.619 0.00 0.00 0.00 3.79
2093 2205 3.885724 TGCCAATCACGAGATAACTCA 57.114 42.857 0.00 0.00 42.72 3.41
2110 2222 3.153919 TGTGGGATTCAACTACTTTGCC 58.846 45.455 0.00 0.00 34.88 4.52
2259 2375 9.574516 AAATAATTATTTTGAGGCTATCCGACT 57.425 29.630 16.15 0.00 33.10 4.18
2289 2405 5.001232 TGAAACTTAGTACAAGCCATCCAC 58.999 41.667 0.00 0.00 0.00 4.02
2291 2407 5.472137 TGTTGAAACTTAGTACAAGCCATCC 59.528 40.000 0.00 0.00 0.00 3.51
2295 2411 5.526111 TCAGTGTTGAAACTTAGTACAAGCC 59.474 40.000 0.00 1.30 0.00 4.35
2362 2478 8.514330 TGACCGGCACTTTAAAATAAGATATT 57.486 30.769 0.00 0.00 0.00 1.28
2463 2583 0.318360 CCGCGTCTGTACTGTGTTGA 60.318 55.000 4.92 0.00 0.00 3.18
2464 2584 0.318360 TCCGCGTCTGTACTGTGTTG 60.318 55.000 4.92 0.00 0.00 3.33
2467 2587 1.413767 GCATCCGCGTCTGTACTGTG 61.414 60.000 4.92 0.00 0.00 3.66
2507 2627 3.123284 GCGTGCGTGTGTTTATAAAGGTA 59.877 43.478 0.00 0.00 0.00 3.08
2528 2648 2.630098 TGCTCATAGAGACATAGTGGGC 59.370 50.000 0.00 0.00 36.83 5.36
2535 2655 3.696548 TCTCAACGTGCTCATAGAGACAT 59.303 43.478 0.00 0.00 0.00 3.06
2551 2671 0.884704 TGCCGGCTCAGTTTCTCAAC 60.885 55.000 29.70 0.00 0.00 3.18
2558 2679 1.210478 AGATAATGTGCCGGCTCAGTT 59.790 47.619 32.65 25.95 0.00 3.16
2629 2750 2.487934 CGATGAGCATTTAGTGGGAGG 58.512 52.381 0.00 0.00 0.00 4.30
2644 2765 9.796120 AATTTATTTTAGATTTTTCGGCGATGA 57.204 25.926 11.76 0.00 0.00 2.92
2678 2799 0.675633 GATTTGCCACTGGTGCTTGT 59.324 50.000 0.00 0.00 0.00 3.16
2680 2801 0.963962 CAGATTTGCCACTGGTGCTT 59.036 50.000 0.00 0.00 0.00 3.91
2691 2812 7.965107 CCATTAGAGTTTAAGTCACAGATTTGC 59.035 37.037 2.45 0.00 0.00 3.68
2706 2827 5.670361 TGGTATTCTAGGCCCATTAGAGTTT 59.330 40.000 0.00 0.00 0.00 2.66
2731 2852 6.480763 TGTGATTGAAGGCTTATAAGGACAA 58.519 36.000 14.28 0.00 0.00 3.18
2738 2859 7.759489 ACAAACTTGTGATTGAAGGCTTATA 57.241 32.000 0.00 0.00 40.49 0.98
2745 2866 4.204978 GTGCGAACAAACTTGTGATTGAAG 59.795 41.667 0.00 0.00 41.31 3.02
2765 2886 5.817296 TCCATTAGACATAACATGTGAGTGC 59.183 40.000 0.00 0.00 45.03 4.40
2810 2963 2.608546 CGGACTGAGACGTTAGGAGTAG 59.391 54.545 0.00 0.00 0.00 2.57
2811 2964 2.027745 ACGGACTGAGACGTTAGGAGTA 60.028 50.000 0.00 0.00 40.99 2.59
2813 2966 1.451067 ACGGACTGAGACGTTAGGAG 58.549 55.000 0.00 0.00 40.99 3.69
2814 2967 2.350522 GTACGGACTGAGACGTTAGGA 58.649 52.381 11.42 0.00 43.79 2.94
2820 5908 1.134075 CCACGTACGGACTGAGACG 59.866 63.158 21.06 10.58 41.02 4.18
2857 6774 0.179171 TCGAAAGGAAGTAGCGAGCG 60.179 55.000 0.00 0.00 0.00 5.03
2867 6784 2.700897 GGATGGAGGAGATCGAAAGGAA 59.299 50.000 0.00 0.00 0.00 3.36
2909 7429 2.092646 CACCGGTTTTCATAGGGATGGA 60.093 50.000 2.97 0.00 33.49 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.