Multiple sequence alignment - TraesCS5A01G216500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G216500 chr5A 100.000 4008 0 0 1 4008 433309246 433313253 0.000000e+00 7402.0
1 TraesCS5A01G216500 chr5A 95.161 62 2 1 230 291 433309428 433309488 3.300000e-16 97.1
2 TraesCS5A01G216500 chr5A 95.161 62 2 1 183 243 433309475 433309536 3.300000e-16 97.1
3 TraesCS5A01G216500 chr5D 95.944 3378 106 15 287 3661 332447741 332451090 0.000000e+00 5450.0
4 TraesCS5A01G216500 chr5D 95.253 316 15 0 3693 4008 332451465 332451780 5.980000e-138 501.0
5 TraesCS5A01G216500 chr5D 89.671 213 13 7 504 713 521491101 521490895 3.070000e-66 263.0
6 TraesCS5A01G216500 chr5D 87.442 215 16 11 501 713 488168881 488168676 1.860000e-58 237.0
7 TraesCS5A01G216500 chr5D 91.250 160 11 3 503 661 52264536 52264379 8.720000e-52 215.0
8 TraesCS5A01G216500 chr5B 96.642 2918 84 7 710 3619 388405669 388408580 0.000000e+00 4833.0
9 TraesCS5A01G216500 chr5B 93.350 406 22 1 3608 4008 388408954 388409359 2.670000e-166 595.0
10 TraesCS5A01G216500 chr5B 91.852 135 10 1 503 637 55629880 55629747 1.900000e-43 187.0
11 TraesCS5A01G216500 chr6B 91.262 206 14 4 503 706 698335255 698335458 1.100000e-70 278.0
12 TraesCS5A01G216500 chr7B 88.991 218 16 7 500 713 732591928 732592141 3.070000e-66 263.0
13 TraesCS5A01G216500 chr2D 76.199 542 94 24 2341 2866 413778658 413778136 1.850000e-63 254.0
14 TraesCS5A01G216500 chr2D 73.774 530 120 16 2341 2862 612438817 612438299 1.470000e-44 191.0
15 TraesCS5A01G216500 chr1D 87.793 213 20 6 503 713 18869195 18869403 1.110000e-60 244.0
16 TraesCS5A01G216500 chr3B 88.517 209 12 12 503 705 783629647 783629849 4.000000e-60 243.0
17 TraesCS5A01G216500 chr2A 73.823 531 118 18 2341 2862 744530042 744529524 1.470000e-44 191.0
18 TraesCS5A01G216500 chr2A 89.157 83 9 0 2784 2866 580852990 580852908 1.970000e-18 104.0
19 TraesCS5A01G216500 chr2B 90.361 83 8 0 2784 2866 486986375 486986293 4.230000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G216500 chr5A 433309246 433313253 4007 False 2532.066667 7402 96.7740 1 4008 3 chr5A.!!$F1 4007
1 TraesCS5A01G216500 chr5D 332447741 332451780 4039 False 2975.500000 5450 95.5985 287 4008 2 chr5D.!!$F1 3721
2 TraesCS5A01G216500 chr5B 388405669 388409359 3690 False 2714.000000 4833 94.9960 710 4008 2 chr5B.!!$F1 3298
3 TraesCS5A01G216500 chr2D 413778136 413778658 522 True 254.000000 254 76.1990 2341 2866 1 chr2D.!!$R1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
239 240 0.111446 TGAAACCCCGGCAATTGAGA 59.889 50.0 10.34 0.0 0.00 3.27 F
291 292 0.321671 CCCCGGCAATCGAGACATAT 59.678 55.0 0.00 0.0 42.43 1.78 F
1266 1274 0.693049 AGGCCGTGAAGAAGACCATT 59.307 50.0 0.00 0.0 0.00 3.16 F
1482 1490 0.759346 ACTGCAAGGAGTTCTTCGGT 59.241 50.0 0.00 0.0 39.30 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 1490 0.902984 TGAGCTCCTCCTTGGCGTAA 60.903 55.000 12.15 0.0 35.26 3.18 R
2278 2286 0.370273 CGGATTAGTCAGCAACGTGC 59.630 55.000 0.00 0.0 45.46 5.34 R
2806 2817 1.153549 GAGCGTCTTGAGCCCGAAT 60.154 57.895 0.00 0.0 34.64 3.34 R
3455 3468 0.509929 GTTGCGTTACCCTTCACGAC 59.490 55.000 0.00 0.0 38.76 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.582689 CTTCTCTTCTTTCTCCTCTCCTC 57.417 47.826 0.00 0.00 0.00 3.71
23 24 4.946160 TCTCTTCTTTCTCCTCTCCTCT 57.054 45.455 0.00 0.00 0.00 3.69
24 25 4.855340 TCTCTTCTTTCTCCTCTCCTCTC 58.145 47.826 0.00 0.00 0.00 3.20
25 26 4.540099 TCTCTTCTTTCTCCTCTCCTCTCT 59.460 45.833 0.00 0.00 0.00 3.10
26 27 5.015178 TCTCTTCTTTCTCCTCTCCTCTCTT 59.985 44.000 0.00 0.00 0.00 2.85
27 28 5.261216 TCTTCTTTCTCCTCTCCTCTCTTC 58.739 45.833 0.00 0.00 0.00 2.87
28 29 4.946160 TCTTTCTCCTCTCCTCTCTTCT 57.054 45.455 0.00 0.00 0.00 2.85
29 30 5.269554 TCTTTCTCCTCTCCTCTCTTCTT 57.730 43.478 0.00 0.00 0.00 2.52
30 31 5.650283 TCTTTCTCCTCTCCTCTCTTCTTT 58.350 41.667 0.00 0.00 0.00 2.52
31 32 5.714806 TCTTTCTCCTCTCCTCTCTTCTTTC 59.285 44.000 0.00 0.00 0.00 2.62
32 33 4.946160 TCTCCTCTCCTCTCTTCTTTCT 57.054 45.455 0.00 0.00 0.00 2.52
33 34 5.269554 TCTCCTCTCCTCTCTTCTTTCTT 57.730 43.478 0.00 0.00 0.00 2.52
34 35 5.261216 TCTCCTCTCCTCTCTTCTTTCTTC 58.739 45.833 0.00 0.00 0.00 2.87
35 36 5.004361 TCCTCTCCTCTCTTCTTTCTTCA 57.996 43.478 0.00 0.00 0.00 3.02
36 37 5.398236 TCCTCTCCTCTCTTCTTTCTTCAA 58.602 41.667 0.00 0.00 0.00 2.69
37 38 5.245075 TCCTCTCCTCTCTTCTTTCTTCAAC 59.755 44.000 0.00 0.00 0.00 3.18
38 39 5.245977 CCTCTCCTCTCTTCTTTCTTCAACT 59.754 44.000 0.00 0.00 0.00 3.16
39 40 6.435904 CCTCTCCTCTCTTCTTTCTTCAACTA 59.564 42.308 0.00 0.00 0.00 2.24
40 41 7.362920 CCTCTCCTCTCTTCTTTCTTCAACTAG 60.363 44.444 0.00 0.00 0.00 2.57
41 42 6.435904 TCTCCTCTCTTCTTTCTTCAACTAGG 59.564 42.308 0.00 0.00 0.00 3.02
42 43 5.046950 TCCTCTCTTCTTTCTTCAACTAGGC 60.047 44.000 0.00 0.00 0.00 3.93
43 44 5.279708 CCTCTCTTCTTTCTTCAACTAGGCA 60.280 44.000 0.00 0.00 0.00 4.75
44 45 5.542779 TCTCTTCTTTCTTCAACTAGGCAC 58.457 41.667 0.00 0.00 0.00 5.01
45 46 5.070446 TCTCTTCTTTCTTCAACTAGGCACA 59.930 40.000 0.00 0.00 0.00 4.57
46 47 5.680619 TCTTCTTTCTTCAACTAGGCACAA 58.319 37.500 0.00 0.00 0.00 3.33
47 48 6.119536 TCTTCTTTCTTCAACTAGGCACAAA 58.880 36.000 0.00 0.00 0.00 2.83
48 49 6.772716 TCTTCTTTCTTCAACTAGGCACAAAT 59.227 34.615 0.00 0.00 0.00 2.32
49 50 6.560253 TCTTTCTTCAACTAGGCACAAATC 57.440 37.500 0.00 0.00 0.00 2.17
50 51 6.299141 TCTTTCTTCAACTAGGCACAAATCT 58.701 36.000 0.00 0.00 0.00 2.40
51 52 5.947228 TTCTTCAACTAGGCACAAATCTG 57.053 39.130 0.00 0.00 0.00 2.90
52 53 5.227569 TCTTCAACTAGGCACAAATCTGA 57.772 39.130 0.00 0.00 0.00 3.27
53 54 4.997395 TCTTCAACTAGGCACAAATCTGAC 59.003 41.667 0.00 0.00 0.00 3.51
54 55 3.325870 TCAACTAGGCACAAATCTGACG 58.674 45.455 0.00 0.00 0.00 4.35
55 56 3.067106 CAACTAGGCACAAATCTGACGT 58.933 45.455 0.00 0.00 0.00 4.34
56 57 2.688507 ACTAGGCACAAATCTGACGTG 58.311 47.619 0.00 0.00 0.00 4.49
57 58 2.299013 ACTAGGCACAAATCTGACGTGA 59.701 45.455 0.00 0.00 32.23 4.35
58 59 1.512926 AGGCACAAATCTGACGTGAC 58.487 50.000 0.00 5.01 39.05 3.67
59 60 1.202639 AGGCACAAATCTGACGTGACA 60.203 47.619 10.95 0.00 41.34 3.58
60 61 1.195448 GGCACAAATCTGACGTGACAG 59.805 52.381 0.00 0.00 38.60 3.51
61 62 1.398960 GCACAAATCTGACGTGACAGC 60.399 52.381 0.00 1.21 37.75 4.40
62 63 2.138320 CACAAATCTGACGTGACAGCT 58.862 47.619 0.00 0.00 37.75 4.24
63 64 2.545526 CACAAATCTGACGTGACAGCTT 59.454 45.455 0.00 0.00 37.75 3.74
64 65 2.802816 ACAAATCTGACGTGACAGCTTC 59.197 45.455 0.00 0.00 37.75 3.86
65 66 3.062763 CAAATCTGACGTGACAGCTTCT 58.937 45.455 0.00 0.00 37.75 2.85
66 67 4.237724 CAAATCTGACGTGACAGCTTCTA 58.762 43.478 0.00 0.00 37.75 2.10
67 68 4.727507 AATCTGACGTGACAGCTTCTAT 57.272 40.909 0.00 0.00 37.75 1.98
68 69 5.836821 AATCTGACGTGACAGCTTCTATA 57.163 39.130 0.00 0.00 37.75 1.31
69 70 4.884458 TCTGACGTGACAGCTTCTATAG 57.116 45.455 0.00 0.00 37.75 1.31
70 71 4.262617 TCTGACGTGACAGCTTCTATAGT 58.737 43.478 0.00 0.00 37.75 2.12
71 72 4.333095 TCTGACGTGACAGCTTCTATAGTC 59.667 45.833 0.00 0.00 37.75 2.59
72 73 3.377485 TGACGTGACAGCTTCTATAGTCC 59.623 47.826 0.00 0.00 0.00 3.85
73 74 3.353557 ACGTGACAGCTTCTATAGTCCA 58.646 45.455 0.00 0.00 0.00 4.02
74 75 3.128938 ACGTGACAGCTTCTATAGTCCAC 59.871 47.826 0.00 0.00 0.00 4.02
75 76 3.489398 CGTGACAGCTTCTATAGTCCACC 60.489 52.174 0.00 0.00 0.00 4.61
76 77 3.702045 GTGACAGCTTCTATAGTCCACCT 59.298 47.826 0.00 0.00 0.00 4.00
77 78 4.888239 GTGACAGCTTCTATAGTCCACCTA 59.112 45.833 0.00 0.00 0.00 3.08
78 79 4.888239 TGACAGCTTCTATAGTCCACCTAC 59.112 45.833 0.00 0.00 0.00 3.18
79 80 3.884091 ACAGCTTCTATAGTCCACCTACG 59.116 47.826 0.00 0.00 0.00 3.51
80 81 3.884091 CAGCTTCTATAGTCCACCTACGT 59.116 47.826 0.00 0.00 0.00 3.57
81 82 4.023878 CAGCTTCTATAGTCCACCTACGTC 60.024 50.000 0.00 0.00 0.00 4.34
82 83 3.881688 GCTTCTATAGTCCACCTACGTCA 59.118 47.826 0.00 0.00 0.00 4.35
83 84 4.261114 GCTTCTATAGTCCACCTACGTCAC 60.261 50.000 0.00 0.00 0.00 3.67
84 85 3.813443 TCTATAGTCCACCTACGTCACC 58.187 50.000 0.00 0.00 0.00 4.02
85 86 1.772836 ATAGTCCACCTACGTCACCC 58.227 55.000 0.00 0.00 0.00 4.61
86 87 0.700564 TAGTCCACCTACGTCACCCT 59.299 55.000 0.00 0.00 0.00 4.34
87 88 0.700564 AGTCCACCTACGTCACCCTA 59.299 55.000 0.00 0.00 0.00 3.53
88 89 1.287146 AGTCCACCTACGTCACCCTAT 59.713 52.381 0.00 0.00 0.00 2.57
89 90 2.105766 GTCCACCTACGTCACCCTATT 58.894 52.381 0.00 0.00 0.00 1.73
90 91 2.104967 TCCACCTACGTCACCCTATTG 58.895 52.381 0.00 0.00 0.00 1.90
91 92 1.829222 CCACCTACGTCACCCTATTGT 59.171 52.381 0.00 0.00 0.00 2.71
92 93 3.025978 CCACCTACGTCACCCTATTGTA 58.974 50.000 0.00 0.00 0.00 2.41
93 94 3.181483 CCACCTACGTCACCCTATTGTAC 60.181 52.174 0.00 0.00 0.00 2.90
94 95 3.698040 CACCTACGTCACCCTATTGTACT 59.302 47.826 0.00 0.00 0.00 2.73
95 96 4.159135 CACCTACGTCACCCTATTGTACTT 59.841 45.833 0.00 0.00 0.00 2.24
96 97 5.357878 CACCTACGTCACCCTATTGTACTTA 59.642 44.000 0.00 0.00 0.00 2.24
97 98 5.358160 ACCTACGTCACCCTATTGTACTTAC 59.642 44.000 0.00 0.00 0.00 2.34
98 99 5.591877 CCTACGTCACCCTATTGTACTTACT 59.408 44.000 0.00 0.00 0.00 2.24
99 100 5.573337 ACGTCACCCTATTGTACTTACTC 57.427 43.478 0.00 0.00 0.00 2.59
100 101 5.012239 ACGTCACCCTATTGTACTTACTCA 58.988 41.667 0.00 0.00 0.00 3.41
101 102 5.105997 ACGTCACCCTATTGTACTTACTCAC 60.106 44.000 0.00 0.00 0.00 3.51
102 103 5.125097 CGTCACCCTATTGTACTTACTCACT 59.875 44.000 0.00 0.00 0.00 3.41
103 104 6.562518 GTCACCCTATTGTACTTACTCACTC 58.437 44.000 0.00 0.00 0.00 3.51
104 105 6.377712 GTCACCCTATTGTACTTACTCACTCT 59.622 42.308 0.00 0.00 0.00 3.24
105 106 7.555554 GTCACCCTATTGTACTTACTCACTCTA 59.444 40.741 0.00 0.00 0.00 2.43
106 107 8.280084 TCACCCTATTGTACTTACTCACTCTAT 58.720 37.037 0.00 0.00 0.00 1.98
107 108 8.569641 CACCCTATTGTACTTACTCACTCTATC 58.430 40.741 0.00 0.00 0.00 2.08
108 109 8.504409 ACCCTATTGTACTTACTCACTCTATCT 58.496 37.037 0.00 0.00 0.00 1.98
118 119 9.091220 ACTTACTCACTCTATCTAAAAACCAGT 57.909 33.333 0.00 0.00 0.00 4.00
119 120 9.575783 CTTACTCACTCTATCTAAAAACCAGTC 57.424 37.037 0.00 0.00 0.00 3.51
120 121 7.540474 ACTCACTCTATCTAAAAACCAGTCA 57.460 36.000 0.00 0.00 0.00 3.41
121 122 7.607250 ACTCACTCTATCTAAAAACCAGTCAG 58.393 38.462 0.00 0.00 0.00 3.51
122 123 6.398918 TCACTCTATCTAAAAACCAGTCAGC 58.601 40.000 0.00 0.00 0.00 4.26
123 124 5.289675 CACTCTATCTAAAAACCAGTCAGCG 59.710 44.000 0.00 0.00 0.00 5.18
124 125 5.047235 ACTCTATCTAAAAACCAGTCAGCGT 60.047 40.000 0.00 0.00 0.00 5.07
125 126 5.168569 TCTATCTAAAAACCAGTCAGCGTG 58.831 41.667 0.00 0.00 0.00 5.34
126 127 3.462483 TCTAAAAACCAGTCAGCGTGA 57.538 42.857 0.00 0.00 0.00 4.35
127 128 4.002906 TCTAAAAACCAGTCAGCGTGAT 57.997 40.909 0.00 0.00 0.00 3.06
128 129 3.745975 TCTAAAAACCAGTCAGCGTGATG 59.254 43.478 0.00 0.00 0.00 3.07
129 130 1.967319 AAAACCAGTCAGCGTGATGT 58.033 45.000 0.00 0.00 0.00 3.06
130 131 1.512926 AAACCAGTCAGCGTGATGTC 58.487 50.000 0.00 0.00 0.00 3.06
131 132 0.392706 AACCAGTCAGCGTGATGTCA 59.607 50.000 0.00 0.00 0.00 3.58
132 133 0.610174 ACCAGTCAGCGTGATGTCAT 59.390 50.000 0.00 0.00 0.00 3.06
133 134 1.004595 CCAGTCAGCGTGATGTCATG 58.995 55.000 0.00 0.00 36.01 3.07
134 135 1.404583 CCAGTCAGCGTGATGTCATGA 60.405 52.381 6.41 0.00 34.90 3.07
135 136 2.547826 CAGTCAGCGTGATGTCATGAT 58.452 47.619 0.00 0.00 34.90 2.45
137 138 2.093816 AGTCAGCGTGATGTCATGATGT 60.094 45.455 17.10 0.29 46.17 3.06
138 139 2.030091 GTCAGCGTGATGTCATGATGTG 59.970 50.000 17.10 6.78 46.17 3.21
139 140 2.004733 CAGCGTGATGTCATGATGTGT 58.995 47.619 11.29 0.00 42.47 3.72
140 141 2.417586 CAGCGTGATGTCATGATGTGTT 59.582 45.455 11.29 0.00 42.47 3.32
141 142 3.076621 AGCGTGATGTCATGATGTGTTT 58.923 40.909 0.00 0.00 34.90 2.83
142 143 4.093261 CAGCGTGATGTCATGATGTGTTTA 59.907 41.667 11.29 0.00 42.47 2.01
143 144 4.694982 AGCGTGATGTCATGATGTGTTTAA 59.305 37.500 0.00 0.00 34.90 1.52
144 145 4.788100 GCGTGATGTCATGATGTGTTTAAC 59.212 41.667 0.00 0.00 34.90 2.01
145 146 5.390885 GCGTGATGTCATGATGTGTTTAACT 60.391 40.000 0.00 0.00 34.90 2.24
146 147 6.017325 CGTGATGTCATGATGTGTTTAACTG 58.983 40.000 0.00 0.00 34.90 3.16
147 148 6.347644 CGTGATGTCATGATGTGTTTAACTGT 60.348 38.462 0.00 0.00 34.90 3.55
148 149 7.017645 GTGATGTCATGATGTGTTTAACTGTC 58.982 38.462 0.00 0.00 0.00 3.51
149 150 6.936335 TGATGTCATGATGTGTTTAACTGTCT 59.064 34.615 0.00 0.00 0.00 3.41
150 151 7.445096 TGATGTCATGATGTGTTTAACTGTCTT 59.555 33.333 0.00 0.00 0.00 3.01
151 152 7.189693 TGTCATGATGTGTTTAACTGTCTTC 57.810 36.000 0.00 0.00 0.00 2.87
152 153 6.992123 TGTCATGATGTGTTTAACTGTCTTCT 59.008 34.615 0.00 0.00 0.00 2.85
153 154 7.041848 TGTCATGATGTGTTTAACTGTCTTCTG 60.042 37.037 0.00 0.00 0.00 3.02
154 155 5.673337 TGATGTGTTTAACTGTCTTCTGC 57.327 39.130 0.00 0.00 0.00 4.26
155 156 5.368145 TGATGTGTTTAACTGTCTTCTGCT 58.632 37.500 0.00 0.00 0.00 4.24
156 157 5.822519 TGATGTGTTTAACTGTCTTCTGCTT 59.177 36.000 0.00 0.00 0.00 3.91
157 158 5.484173 TGTGTTTAACTGTCTTCTGCTTG 57.516 39.130 0.00 0.00 0.00 4.01
158 159 4.335315 TGTGTTTAACTGTCTTCTGCTTGG 59.665 41.667 0.00 0.00 0.00 3.61
159 160 4.574828 GTGTTTAACTGTCTTCTGCTTGGA 59.425 41.667 0.00 0.00 0.00 3.53
160 161 4.816385 TGTTTAACTGTCTTCTGCTTGGAG 59.184 41.667 0.00 0.00 0.00 3.86
161 162 4.955811 TTAACTGTCTTCTGCTTGGAGA 57.044 40.909 0.00 0.00 0.00 3.71
162 163 3.845781 AACTGTCTTCTGCTTGGAGAA 57.154 42.857 4.61 4.61 0.00 2.87
164 165 2.038295 ACTGTCTTCTGCTTGGAGAAGG 59.962 50.000 24.48 14.87 46.21 3.46
165 166 2.038295 CTGTCTTCTGCTTGGAGAAGGT 59.962 50.000 24.48 0.00 46.21 3.50
166 167 3.239449 TGTCTTCTGCTTGGAGAAGGTA 58.761 45.455 24.48 14.71 46.21 3.08
167 168 3.646162 TGTCTTCTGCTTGGAGAAGGTAA 59.354 43.478 24.48 12.39 46.21 2.85
168 169 4.287067 TGTCTTCTGCTTGGAGAAGGTAAT 59.713 41.667 24.48 0.00 46.21 1.89
169 170 5.483937 TGTCTTCTGCTTGGAGAAGGTAATA 59.516 40.000 24.48 8.49 46.21 0.98
170 171 6.156949 TGTCTTCTGCTTGGAGAAGGTAATAT 59.843 38.462 24.48 0.00 46.21 1.28
171 172 7.051000 GTCTTCTGCTTGGAGAAGGTAATATT 58.949 38.462 24.48 0.00 46.21 1.28
172 173 7.011857 GTCTTCTGCTTGGAGAAGGTAATATTG 59.988 40.741 24.48 4.51 46.21 1.90
173 174 6.313519 TCTGCTTGGAGAAGGTAATATTGT 57.686 37.500 0.00 0.00 0.00 2.71
174 175 7.432148 TCTGCTTGGAGAAGGTAATATTGTA 57.568 36.000 0.00 0.00 0.00 2.41
175 176 8.034313 TCTGCTTGGAGAAGGTAATATTGTAT 57.966 34.615 0.00 0.00 0.00 2.29
176 177 9.154632 TCTGCTTGGAGAAGGTAATATTGTATA 57.845 33.333 0.00 0.00 0.00 1.47
177 178 9.429359 CTGCTTGGAGAAGGTAATATTGTATAG 57.571 37.037 0.00 0.00 0.00 1.31
178 179 8.934697 TGCTTGGAGAAGGTAATATTGTATAGT 58.065 33.333 0.00 0.00 0.00 2.12
179 180 9.425577 GCTTGGAGAAGGTAATATTGTATAGTC 57.574 37.037 0.00 0.00 0.00 2.59
201 202 8.616799 AGTCTAGGGAATTGAGAATACTTTCT 57.383 34.615 0.00 0.00 44.99 2.52
202 203 9.052365 AGTCTAGGGAATTGAGAATACTTTCTT 57.948 33.333 0.00 0.00 42.34 2.52
203 204 9.674068 GTCTAGGGAATTGAGAATACTTTCTTT 57.326 33.333 0.00 0.00 42.34 2.52
207 208 9.593565 AGGGAATTGAGAATACTTTCTTTTCTT 57.406 29.630 0.00 0.00 42.34 2.52
219 220 7.482169 ACTTTCTTTTCTTTGAAAAGGAGGT 57.518 32.000 23.83 20.69 37.72 3.85
220 221 7.907389 ACTTTCTTTTCTTTGAAAAGGAGGTT 58.093 30.769 23.83 10.49 33.03 3.50
221 222 7.819415 ACTTTCTTTTCTTTGAAAAGGAGGTTG 59.181 33.333 23.83 13.70 33.03 3.77
222 223 7.475137 TTCTTTTCTTTGAAAAGGAGGTTGA 57.525 32.000 23.83 8.10 37.72 3.18
223 224 7.475137 TCTTTTCTTTGAAAAGGAGGTTGAA 57.525 32.000 23.83 7.37 37.72 2.69
224 225 7.902087 TCTTTTCTTTGAAAAGGAGGTTGAAA 58.098 30.769 23.83 6.84 37.72 2.69
225 226 7.817478 TCTTTTCTTTGAAAAGGAGGTTGAAAC 59.183 33.333 23.83 0.00 37.72 2.78
226 227 5.592104 TCTTTGAAAAGGAGGTTGAAACC 57.408 39.130 3.91 3.91 41.60 3.27
227 228 4.404394 TCTTTGAAAAGGAGGTTGAAACCC 59.596 41.667 8.62 0.96 41.91 4.11
228 229 4.442893 CTTTGAAAAGGAGGTTGAAACCCC 60.443 45.833 8.62 9.56 39.86 4.95
229 230 7.684450 CTTTGAAAAGGAGGTTGAAACCCCG 62.684 48.000 8.62 0.00 41.50 5.73
234 235 3.785982 GGTTGAAACCCCGGCAAT 58.214 55.556 0.00 0.00 43.43 3.56
235 236 2.054458 GGTTGAAACCCCGGCAATT 58.946 52.632 0.00 0.00 43.43 2.32
236 237 0.320334 GGTTGAAACCCCGGCAATTG 60.320 55.000 0.00 0.00 43.43 2.32
237 238 0.676736 GTTGAAACCCCGGCAATTGA 59.323 50.000 10.34 0.00 0.00 2.57
238 239 0.965439 TTGAAACCCCGGCAATTGAG 59.035 50.000 10.34 1.76 0.00 3.02
239 240 0.111446 TGAAACCCCGGCAATTGAGA 59.889 50.000 10.34 0.00 0.00 3.27
240 241 1.253100 GAAACCCCGGCAATTGAGAA 58.747 50.000 10.34 0.00 0.00 2.87
241 242 1.824852 GAAACCCCGGCAATTGAGAAT 59.175 47.619 10.34 0.00 0.00 2.40
242 243 2.818751 AACCCCGGCAATTGAGAATA 57.181 45.000 10.34 0.00 0.00 1.75
243 244 2.052782 ACCCCGGCAATTGAGAATAC 57.947 50.000 10.34 0.00 0.00 1.89
244 245 1.564348 ACCCCGGCAATTGAGAATACT 59.436 47.619 10.34 0.00 0.00 2.12
245 246 2.025321 ACCCCGGCAATTGAGAATACTT 60.025 45.455 10.34 0.00 0.00 2.24
246 247 3.023832 CCCCGGCAATTGAGAATACTTT 58.976 45.455 10.34 0.00 0.00 2.66
247 248 3.066760 CCCCGGCAATTGAGAATACTTTC 59.933 47.826 10.34 0.00 0.00 2.62
248 249 3.947834 CCCGGCAATTGAGAATACTTTCT 59.052 43.478 10.34 0.00 44.99 2.52
249 250 4.399303 CCCGGCAATTGAGAATACTTTCTT 59.601 41.667 10.34 0.00 42.34 2.52
250 251 5.105756 CCCGGCAATTGAGAATACTTTCTTT 60.106 40.000 10.34 0.00 42.34 2.52
251 252 6.389906 CCGGCAATTGAGAATACTTTCTTTT 58.610 36.000 10.34 0.00 42.34 2.27
252 253 6.528072 CCGGCAATTGAGAATACTTTCTTTTC 59.472 38.462 10.34 0.00 42.34 2.29
253 254 7.308435 CGGCAATTGAGAATACTTTCTTTTCT 58.692 34.615 10.34 0.00 42.34 2.52
254 255 7.809806 CGGCAATTGAGAATACTTTCTTTTCTT 59.190 33.333 10.34 0.00 42.34 2.52
255 256 9.481340 GGCAATTGAGAATACTTTCTTTTCTTT 57.519 29.630 10.34 0.00 42.34 2.52
266 267 7.482169 ACTTTCTTTTCTTTGAAAAGGAGGT 57.518 32.000 23.83 20.69 37.72 3.85
267 268 7.907389 ACTTTCTTTTCTTTGAAAAGGAGGTT 58.093 30.769 23.83 10.49 33.03 3.50
268 269 7.819415 ACTTTCTTTTCTTTGAAAAGGAGGTTG 59.181 33.333 23.83 13.70 33.03 3.77
269 270 7.475137 TTCTTTTCTTTGAAAAGGAGGTTGA 57.525 32.000 23.83 8.10 37.72 3.18
270 271 7.475137 TCTTTTCTTTGAAAAGGAGGTTGAA 57.525 32.000 23.83 7.37 37.72 2.69
271 272 7.902087 TCTTTTCTTTGAAAAGGAGGTTGAAA 58.098 30.769 23.83 6.84 37.72 2.69
272 273 7.817478 TCTTTTCTTTGAAAAGGAGGTTGAAAC 59.183 33.333 23.83 0.00 37.72 2.78
273 274 5.592104 TCTTTGAAAAGGAGGTTGAAACC 57.408 39.130 3.91 3.91 41.60 3.27
274 275 4.404394 TCTTTGAAAAGGAGGTTGAAACCC 59.596 41.667 8.62 0.96 41.91 4.11
275 276 4.442893 CTTTGAAAAGGAGGTTGAAACCCC 60.443 45.833 8.62 9.56 39.86 4.95
276 277 7.684450 CTTTGAAAAGGAGGTTGAAACCCCG 62.684 48.000 8.62 0.00 41.50 5.73
281 282 3.785982 GGTTGAAACCCCGGCAAT 58.214 55.556 0.00 0.00 43.43 3.56
282 283 1.589630 GGTTGAAACCCCGGCAATC 59.410 57.895 0.00 0.00 43.43 2.67
283 284 1.211709 GTTGAAACCCCGGCAATCG 59.788 57.895 0.00 0.00 38.88 3.34
284 285 1.073373 TTGAAACCCCGGCAATCGA 59.927 52.632 0.00 0.00 42.43 3.59
285 286 0.958382 TTGAAACCCCGGCAATCGAG 60.958 55.000 0.00 0.00 42.43 4.04
291 292 0.321671 CCCCGGCAATCGAGACATAT 59.678 55.000 0.00 0.00 42.43 1.78
309 310 8.980481 AGACATATTCCCTTCGTATCAAAATT 57.020 30.769 0.00 0.00 0.00 1.82
435 436 1.588139 CGACCGATCCCTACGTTGC 60.588 63.158 0.00 0.00 0.00 4.17
436 437 1.227176 GACCGATCCCTACGTTGCC 60.227 63.158 0.00 0.00 0.00 4.52
437 438 2.108362 CCGATCCCTACGTTGCCC 59.892 66.667 0.00 0.00 0.00 5.36
438 439 2.727392 CCGATCCCTACGTTGCCCA 61.727 63.158 0.00 0.00 0.00 5.36
467 468 6.385649 ACGAAAATAAGTGGTGAACAATGT 57.614 33.333 0.00 0.00 0.00 2.71
468 469 6.205784 ACGAAAATAAGTGGTGAACAATGTG 58.794 36.000 0.00 0.00 0.00 3.21
475 476 3.953612 AGTGGTGAACAATGTGTGTCAAT 59.046 39.130 0.00 0.00 40.60 2.57
483 484 6.427853 TGAACAATGTGTGTCAATTAGGAGAG 59.572 38.462 0.00 0.00 40.60 3.20
553 554 3.132824 GGGGGTTCCTGCATTTCATTAAG 59.867 47.826 0.00 0.00 0.00 1.85
581 582 5.148502 AGAGAGTTGGTCCAGTTTAGAAGA 58.851 41.667 0.00 0.00 0.00 2.87
586 587 7.067129 AGAGTTGGTCCAGTTTAGAAGAAAAAC 59.933 37.037 0.00 0.00 37.14 2.43
591 592 4.818005 TCCAGTTTAGAAGAAAAACCGGAC 59.182 41.667 9.46 0.00 38.09 4.79
593 594 4.820173 CAGTTTAGAAGAAAAACCGGACCT 59.180 41.667 9.46 0.00 37.51 3.85
599 600 4.097437 AGAAGAAAAACCGGACCTGAAAAC 59.903 41.667 9.46 0.00 0.00 2.43
604 605 2.556144 ACCGGACCTGAAAACCTAAC 57.444 50.000 9.46 0.00 0.00 2.34
612 613 5.048013 GGACCTGAAAACCTAACATTCTTGG 60.048 44.000 0.00 0.00 0.00 3.61
637 638 5.799827 AATCAGGGAAAACCGAATGAAAA 57.200 34.783 0.00 0.00 46.96 2.29
645 646 5.354513 GGAAAACCGAATGAAAACCCAAAAA 59.645 36.000 0.00 0.00 0.00 1.94
646 647 6.429791 AAAACCGAATGAAAACCCAAAAAG 57.570 33.333 0.00 0.00 0.00 2.27
657 658 7.902087 TGAAAACCCAAAAAGAAGAGAAAAGA 58.098 30.769 0.00 0.00 0.00 2.52
692 693 2.229784 GAGGCACAAGAAACTTGGGATG 59.770 50.000 16.40 6.98 0.00 3.51
697 698 2.171003 CAAGAAACTTGGGATGGGGAC 58.829 52.381 0.00 0.00 0.00 4.46
725 726 2.404789 CTAGCGGCCATTGTTGCG 59.595 61.111 2.24 0.00 0.00 4.85
765 766 8.428063 AGTACTAATCAAGGATCATTGGAAGAG 58.572 37.037 19.21 13.37 0.00 2.85
817 818 4.093743 GCCCTTCTTTCCCTGGAATTTAA 58.906 43.478 0.00 0.00 33.79 1.52
819 820 5.333581 CCCTTCTTTCCCTGGAATTTAACT 58.666 41.667 0.00 0.00 33.79 2.24
1170 1178 2.485814 CGGGAAGCAGAAGGAAGAAAAG 59.514 50.000 0.00 0.00 0.00 2.27
1266 1274 0.693049 AGGCCGTGAAGAAGACCATT 59.307 50.000 0.00 0.00 0.00 3.16
1482 1490 0.759346 ACTGCAAGGAGTTCTTCGGT 59.241 50.000 0.00 0.00 39.30 4.69
1516 1524 3.964221 CTCAACCGCACGCTCGCTA 62.964 63.158 0.00 0.00 0.00 4.26
1648 1656 3.924114 TCAAGGACAAGGTGAAGTTGA 57.076 42.857 0.00 0.00 0.00 3.18
1649 1657 4.437682 TCAAGGACAAGGTGAAGTTGAT 57.562 40.909 0.00 0.00 0.00 2.57
1988 1996 5.580691 GGTACGTACATATACATGCATGCAT 59.419 40.000 27.46 27.46 35.39 3.96
2300 2308 3.247442 CACGTTGCTGACTAATCCGTTA 58.753 45.455 0.00 0.00 0.00 3.18
3105 3116 3.213506 CATCCTGAGTTGTTTGTCACCA 58.786 45.455 0.00 0.00 0.00 4.17
3248 3260 1.997606 GCTGGTATACGCGTTTCTTGT 59.002 47.619 20.78 0.00 0.00 3.16
3306 3318 7.730364 ATTTCGACAATGGTAGATTATGGAC 57.270 36.000 0.00 0.00 0.00 4.02
3320 3332 6.777782 AGATTATGGACAAGGAAGATGATCC 58.222 40.000 0.00 0.00 39.96 3.36
3336 3348 5.420104 AGATGATCCCCACAAATTGACTTTC 59.580 40.000 0.00 0.00 0.00 2.62
3337 3349 3.831911 TGATCCCCACAAATTGACTTTCC 59.168 43.478 0.00 0.00 0.00 3.13
3359 3372 3.859370 CCCCCAAAACCCTAAAAACCTA 58.141 45.455 0.00 0.00 0.00 3.08
3361 3374 4.847512 CCCCCAAAACCCTAAAAACCTATT 59.152 41.667 0.00 0.00 0.00 1.73
3375 3388 1.493022 ACCTATTTGGCGATTAGGGCA 59.507 47.619 21.26 0.00 41.13 5.36
3423 3436 1.202348 CCTATCAGCAGAGTGTGTCGG 60.202 57.143 0.00 0.00 0.00 4.79
3441 3454 3.632604 GTCGGTGACTGATCAGGAAGATA 59.367 47.826 26.08 5.40 37.00 1.98
3452 3465 3.387962 TCAGGAAGATAACTGCATCCCT 58.612 45.455 0.00 0.00 34.76 4.20
3453 3466 3.782523 TCAGGAAGATAACTGCATCCCTT 59.217 43.478 0.00 0.00 34.76 3.95
3454 3467 3.881688 CAGGAAGATAACTGCATCCCTTG 59.118 47.826 0.00 0.00 0.00 3.61
3455 3468 3.117738 AGGAAGATAACTGCATCCCTTGG 60.118 47.826 0.00 0.00 0.00 3.61
3523 3536 2.046023 TGCACATGGAGAAGGCGG 60.046 61.111 0.00 0.00 0.00 6.13
3544 3557 3.653539 TCGGAAAACTCGACATCTTGA 57.346 42.857 0.00 0.00 0.00 3.02
3561 3574 3.997021 TCTTGAAGGAAGAAGCGATGTTC 59.003 43.478 0.00 0.00 37.78 3.18
3610 3623 2.549754 ACAAAGTTCTGCACTGGAATCG 59.450 45.455 0.00 0.00 35.12 3.34
3646 4044 1.548357 ATCTCCAGTGCCTTGCGTCT 61.548 55.000 0.00 0.00 0.00 4.18
3648 4046 0.037326 CTCCAGTGCCTTGCGTCTAA 60.037 55.000 0.00 0.00 0.00 2.10
3700 4441 4.457257 CCATCCTCTTGGAGAAAACAAGTC 59.543 45.833 5.24 0.00 46.91 3.01
3701 4442 5.312079 CATCCTCTTGGAGAAAACAAGTCT 58.688 41.667 5.24 0.00 46.91 3.24
3702 4443 6.467677 CATCCTCTTGGAGAAAACAAGTCTA 58.532 40.000 5.24 0.00 46.91 2.59
3735 4476 0.887933 GGCCAAACATGATCGTGGTT 59.112 50.000 18.97 15.94 33.43 3.67
3786 4527 5.733676 TCAGTAAGCATGCAGTGATCTTAA 58.266 37.500 21.98 0.00 0.00 1.85
3817 4558 1.742761 GCACACATGTAGCCATCAGT 58.257 50.000 10.50 0.00 0.00 3.41
3905 4646 1.608918 ATGGGGTTTGGCGATTGCA 60.609 52.632 7.38 0.00 45.35 4.08
3946 4687 3.205338 CAACCTTGGTGCATATCGATCA 58.795 45.455 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.264395 AGAGGAGAGGAGAAAGAAGAGAAG 58.736 45.833 0.00 0.00 0.00 2.85
1 2 5.015178 AGAGAGGAGAGGAGAAAGAAGAGAA 59.985 44.000 0.00 0.00 0.00 2.87
2 3 4.540099 AGAGAGGAGAGGAGAAAGAAGAGA 59.460 45.833 0.00 0.00 0.00 3.10
3 4 4.860022 AGAGAGGAGAGGAGAAAGAAGAG 58.140 47.826 0.00 0.00 0.00 2.85
4 5 4.946160 AGAGAGGAGAGGAGAAAGAAGA 57.054 45.455 0.00 0.00 0.00 2.87
5 6 5.264395 AGAAGAGAGGAGAGGAGAAAGAAG 58.736 45.833 0.00 0.00 0.00 2.85
6 7 5.269554 AGAAGAGAGGAGAGGAGAAAGAA 57.730 43.478 0.00 0.00 0.00 2.52
7 8 4.946160 AGAAGAGAGGAGAGGAGAAAGA 57.054 45.455 0.00 0.00 0.00 2.52
8 9 5.716703 AGAAAGAAGAGAGGAGAGGAGAAAG 59.283 44.000 0.00 0.00 0.00 2.62
9 10 5.650283 AGAAAGAAGAGAGGAGAGGAGAAA 58.350 41.667 0.00 0.00 0.00 2.52
10 11 5.269554 AGAAAGAAGAGAGGAGAGGAGAA 57.730 43.478 0.00 0.00 0.00 2.87
11 12 4.946160 AGAAAGAAGAGAGGAGAGGAGA 57.054 45.455 0.00 0.00 0.00 3.71
12 13 5.016173 TGAAGAAAGAAGAGAGGAGAGGAG 58.984 45.833 0.00 0.00 0.00 3.69
13 14 5.004361 TGAAGAAAGAAGAGAGGAGAGGA 57.996 43.478 0.00 0.00 0.00 3.71
14 15 5.245977 AGTTGAAGAAAGAAGAGAGGAGAGG 59.754 44.000 0.00 0.00 0.00 3.69
15 16 6.345096 AGTTGAAGAAAGAAGAGAGGAGAG 57.655 41.667 0.00 0.00 0.00 3.20
16 17 6.435904 CCTAGTTGAAGAAAGAAGAGAGGAGA 59.564 42.308 0.00 0.00 0.00 3.71
17 18 6.630071 CCTAGTTGAAGAAAGAAGAGAGGAG 58.370 44.000 0.00 0.00 0.00 3.69
18 19 5.046950 GCCTAGTTGAAGAAAGAAGAGAGGA 60.047 44.000 0.00 0.00 0.00 3.71
19 20 5.175127 GCCTAGTTGAAGAAAGAAGAGAGG 58.825 45.833 0.00 0.00 0.00 3.69
20 21 5.637387 GTGCCTAGTTGAAGAAAGAAGAGAG 59.363 44.000 0.00 0.00 0.00 3.20
21 22 5.070446 TGTGCCTAGTTGAAGAAAGAAGAGA 59.930 40.000 0.00 0.00 0.00 3.10
22 23 5.300752 TGTGCCTAGTTGAAGAAAGAAGAG 58.699 41.667 0.00 0.00 0.00 2.85
23 24 5.290493 TGTGCCTAGTTGAAGAAAGAAGA 57.710 39.130 0.00 0.00 0.00 2.87
24 25 6.377327 TTTGTGCCTAGTTGAAGAAAGAAG 57.623 37.500 0.00 0.00 0.00 2.85
25 26 6.772716 AGATTTGTGCCTAGTTGAAGAAAGAA 59.227 34.615 0.00 0.00 0.00 2.52
26 27 6.205464 CAGATTTGTGCCTAGTTGAAGAAAGA 59.795 38.462 0.00 0.00 0.00 2.52
27 28 6.205464 TCAGATTTGTGCCTAGTTGAAGAAAG 59.795 38.462 0.00 0.00 0.00 2.62
28 29 6.017109 GTCAGATTTGTGCCTAGTTGAAGAAA 60.017 38.462 0.00 0.00 0.00 2.52
29 30 5.470098 GTCAGATTTGTGCCTAGTTGAAGAA 59.530 40.000 0.00 0.00 0.00 2.52
30 31 4.997395 GTCAGATTTGTGCCTAGTTGAAGA 59.003 41.667 0.00 0.00 0.00 2.87
31 32 4.143030 CGTCAGATTTGTGCCTAGTTGAAG 60.143 45.833 0.00 0.00 0.00 3.02
32 33 3.745975 CGTCAGATTTGTGCCTAGTTGAA 59.254 43.478 0.00 0.00 0.00 2.69
33 34 3.244078 ACGTCAGATTTGTGCCTAGTTGA 60.244 43.478 0.00 0.00 0.00 3.18
34 35 3.067106 ACGTCAGATTTGTGCCTAGTTG 58.933 45.455 0.00 0.00 0.00 3.16
35 36 3.067106 CACGTCAGATTTGTGCCTAGTT 58.933 45.455 0.00 0.00 0.00 2.24
36 37 2.299013 TCACGTCAGATTTGTGCCTAGT 59.701 45.455 0.00 0.00 33.69 2.57
37 38 2.668457 GTCACGTCAGATTTGTGCCTAG 59.332 50.000 0.00 0.00 33.69 3.02
38 39 2.036604 TGTCACGTCAGATTTGTGCCTA 59.963 45.455 0.00 0.00 33.69 3.93
39 40 1.202639 TGTCACGTCAGATTTGTGCCT 60.203 47.619 0.00 0.00 33.69 4.75
40 41 1.195448 CTGTCACGTCAGATTTGTGCC 59.805 52.381 0.00 0.00 37.61 5.01
41 42 1.398960 GCTGTCACGTCAGATTTGTGC 60.399 52.381 8.35 0.00 37.61 4.57
42 43 2.138320 AGCTGTCACGTCAGATTTGTG 58.862 47.619 8.35 0.00 37.61 3.33
43 44 2.533266 AGCTGTCACGTCAGATTTGT 57.467 45.000 8.35 0.00 37.61 2.83
44 45 3.062763 AGAAGCTGTCACGTCAGATTTG 58.937 45.455 8.87 0.00 42.79 2.32
45 46 3.393089 AGAAGCTGTCACGTCAGATTT 57.607 42.857 8.87 2.61 42.79 2.17
46 47 4.727507 ATAGAAGCTGTCACGTCAGATT 57.272 40.909 7.40 7.40 44.89 2.40
47 48 4.884744 ACTATAGAAGCTGTCACGTCAGAT 59.115 41.667 6.78 0.00 37.61 2.90
48 49 4.262617 ACTATAGAAGCTGTCACGTCAGA 58.737 43.478 6.78 0.00 37.61 3.27
49 50 4.496673 GGACTATAGAAGCTGTCACGTCAG 60.497 50.000 6.78 0.01 38.35 3.51
50 51 3.377485 GGACTATAGAAGCTGTCACGTCA 59.623 47.826 6.78 0.00 0.00 4.35
51 52 3.377485 TGGACTATAGAAGCTGTCACGTC 59.623 47.826 6.78 0.00 0.00 4.34
52 53 3.128938 GTGGACTATAGAAGCTGTCACGT 59.871 47.826 6.78 0.00 0.00 4.49
53 54 3.489398 GGTGGACTATAGAAGCTGTCACG 60.489 52.174 6.78 0.00 0.00 4.35
54 55 3.702045 AGGTGGACTATAGAAGCTGTCAC 59.298 47.826 6.78 4.07 0.00 3.67
55 56 3.982516 AGGTGGACTATAGAAGCTGTCA 58.017 45.455 6.78 0.00 0.00 3.58
56 57 4.023878 CGTAGGTGGACTATAGAAGCTGTC 60.024 50.000 6.78 0.00 33.43 3.51
57 58 3.884091 CGTAGGTGGACTATAGAAGCTGT 59.116 47.826 6.78 0.00 33.43 4.40
58 59 3.884091 ACGTAGGTGGACTATAGAAGCTG 59.116 47.826 6.78 0.00 33.43 4.24
59 60 4.136051 GACGTAGGTGGACTATAGAAGCT 58.864 47.826 6.78 8.90 33.43 3.74
60 61 3.881688 TGACGTAGGTGGACTATAGAAGC 59.118 47.826 6.78 1.63 33.43 3.86
61 62 4.275443 GGTGACGTAGGTGGACTATAGAAG 59.725 50.000 6.78 0.00 33.43 2.85
62 63 4.202441 GGTGACGTAGGTGGACTATAGAA 58.798 47.826 6.78 0.00 33.43 2.10
63 64 3.434167 GGGTGACGTAGGTGGACTATAGA 60.434 52.174 6.78 0.00 33.43 1.98
64 65 2.883386 GGGTGACGTAGGTGGACTATAG 59.117 54.545 0.00 0.00 33.43 1.31
65 66 2.511218 AGGGTGACGTAGGTGGACTATA 59.489 50.000 0.00 0.00 33.43 1.31
66 67 1.287146 AGGGTGACGTAGGTGGACTAT 59.713 52.381 0.00 0.00 33.43 2.12
67 68 0.700564 AGGGTGACGTAGGTGGACTA 59.299 55.000 0.00 0.00 0.00 2.59
68 69 0.700564 TAGGGTGACGTAGGTGGACT 59.299 55.000 0.00 0.00 0.00 3.85
69 70 1.772836 ATAGGGTGACGTAGGTGGAC 58.227 55.000 0.00 0.00 33.60 4.02
70 71 2.104967 CAATAGGGTGACGTAGGTGGA 58.895 52.381 0.00 0.00 33.60 4.02
71 72 1.829222 ACAATAGGGTGACGTAGGTGG 59.171 52.381 0.00 0.00 33.60 4.61
72 73 3.698040 AGTACAATAGGGTGACGTAGGTG 59.302 47.826 0.00 0.00 33.60 4.00
73 74 3.973425 AGTACAATAGGGTGACGTAGGT 58.027 45.455 0.00 0.00 33.60 3.08
74 75 4.996788 AAGTACAATAGGGTGACGTAGG 57.003 45.455 0.00 0.00 33.60 3.18
75 76 6.317140 TGAGTAAGTACAATAGGGTGACGTAG 59.683 42.308 0.00 0.00 33.60 3.51
76 77 6.094048 GTGAGTAAGTACAATAGGGTGACGTA 59.906 42.308 0.00 0.00 34.78 3.57
77 78 5.012239 TGAGTAAGTACAATAGGGTGACGT 58.988 41.667 0.00 0.00 0.00 4.34
78 79 5.125097 AGTGAGTAAGTACAATAGGGTGACG 59.875 44.000 0.00 0.00 0.00 4.35
79 80 6.377712 AGAGTGAGTAAGTACAATAGGGTGAC 59.622 42.308 0.00 0.00 0.00 3.67
80 81 6.491383 AGAGTGAGTAAGTACAATAGGGTGA 58.509 40.000 0.00 0.00 0.00 4.02
81 82 6.777213 AGAGTGAGTAAGTACAATAGGGTG 57.223 41.667 0.00 0.00 0.00 4.61
82 83 8.504409 AGATAGAGTGAGTAAGTACAATAGGGT 58.496 37.037 0.00 0.00 0.00 4.34
83 84 8.927675 AGATAGAGTGAGTAAGTACAATAGGG 57.072 38.462 0.00 0.00 0.00 3.53
92 93 9.091220 ACTGGTTTTTAGATAGAGTGAGTAAGT 57.909 33.333 0.00 0.00 0.00 2.24
93 94 9.575783 GACTGGTTTTTAGATAGAGTGAGTAAG 57.424 37.037 0.00 0.00 0.00 2.34
94 95 9.085645 TGACTGGTTTTTAGATAGAGTGAGTAA 57.914 33.333 0.00 0.00 0.00 2.24
95 96 8.645814 TGACTGGTTTTTAGATAGAGTGAGTA 57.354 34.615 0.00 0.00 0.00 2.59
96 97 7.540474 TGACTGGTTTTTAGATAGAGTGAGT 57.460 36.000 0.00 0.00 0.00 3.41
97 98 6.533367 GCTGACTGGTTTTTAGATAGAGTGAG 59.467 42.308 0.00 0.00 0.00 3.51
98 99 6.398918 GCTGACTGGTTTTTAGATAGAGTGA 58.601 40.000 0.00 0.00 0.00 3.41
99 100 5.289675 CGCTGACTGGTTTTTAGATAGAGTG 59.710 44.000 0.00 0.00 0.00 3.51
100 101 5.047235 ACGCTGACTGGTTTTTAGATAGAGT 60.047 40.000 0.00 0.00 0.00 3.24
101 102 5.289675 CACGCTGACTGGTTTTTAGATAGAG 59.710 44.000 0.00 0.00 0.00 2.43
102 103 5.047590 TCACGCTGACTGGTTTTTAGATAGA 60.048 40.000 0.00 0.00 0.00 1.98
103 104 5.168569 TCACGCTGACTGGTTTTTAGATAG 58.831 41.667 0.00 0.00 0.00 2.08
104 105 5.142061 TCACGCTGACTGGTTTTTAGATA 57.858 39.130 0.00 0.00 0.00 1.98
105 106 4.002906 TCACGCTGACTGGTTTTTAGAT 57.997 40.909 0.00 0.00 0.00 1.98
106 107 3.462483 TCACGCTGACTGGTTTTTAGA 57.538 42.857 0.00 0.00 0.00 2.10
107 108 3.498397 ACATCACGCTGACTGGTTTTTAG 59.502 43.478 0.00 0.00 0.00 1.85
108 109 3.472652 ACATCACGCTGACTGGTTTTTA 58.527 40.909 0.00 0.00 0.00 1.52
109 110 2.290641 GACATCACGCTGACTGGTTTTT 59.709 45.455 0.00 0.00 0.00 1.94
110 111 1.873591 GACATCACGCTGACTGGTTTT 59.126 47.619 0.00 0.00 0.00 2.43
111 112 1.202639 TGACATCACGCTGACTGGTTT 60.203 47.619 0.00 0.00 0.00 3.27
112 113 0.392706 TGACATCACGCTGACTGGTT 59.607 50.000 0.00 0.00 0.00 3.67
113 114 0.610174 ATGACATCACGCTGACTGGT 59.390 50.000 0.00 0.00 0.00 4.00
114 115 1.004595 CATGACATCACGCTGACTGG 58.995 55.000 0.00 0.00 0.00 4.00
115 116 2.000429 TCATGACATCACGCTGACTG 58.000 50.000 0.00 0.00 0.00 3.51
116 117 2.093816 ACATCATGACATCACGCTGACT 60.094 45.455 0.00 0.00 0.00 3.41
117 118 2.030091 CACATCATGACATCACGCTGAC 59.970 50.000 0.00 0.00 0.00 3.51
118 119 2.273557 CACATCATGACATCACGCTGA 58.726 47.619 0.00 0.00 0.00 4.26
119 120 2.004733 ACACATCATGACATCACGCTG 58.995 47.619 0.00 0.00 0.00 5.18
120 121 2.391616 ACACATCATGACATCACGCT 57.608 45.000 0.00 0.00 0.00 5.07
121 122 3.476295 AAACACATCATGACATCACGC 57.524 42.857 0.00 0.00 0.00 5.34
122 123 6.017325 CAGTTAAACACATCATGACATCACG 58.983 40.000 0.00 0.00 0.00 4.35
123 124 6.902341 ACAGTTAAACACATCATGACATCAC 58.098 36.000 0.00 0.00 0.00 3.06
124 125 6.936335 AGACAGTTAAACACATCATGACATCA 59.064 34.615 0.00 0.00 0.00 3.07
125 126 7.369803 AGACAGTTAAACACATCATGACATC 57.630 36.000 0.00 0.00 0.00 3.06
126 127 7.663081 AGAAGACAGTTAAACACATCATGACAT 59.337 33.333 0.00 0.00 0.00 3.06
127 128 6.992123 AGAAGACAGTTAAACACATCATGACA 59.008 34.615 0.00 0.00 0.00 3.58
128 129 7.293745 CAGAAGACAGTTAAACACATCATGAC 58.706 38.462 0.00 0.00 0.00 3.06
129 130 6.073058 GCAGAAGACAGTTAAACACATCATGA 60.073 38.462 0.00 0.00 0.00 3.07
130 131 6.072838 AGCAGAAGACAGTTAAACACATCATG 60.073 38.462 0.00 0.00 0.00 3.07
131 132 6.000219 AGCAGAAGACAGTTAAACACATCAT 59.000 36.000 0.00 0.00 0.00 2.45
132 133 5.368145 AGCAGAAGACAGTTAAACACATCA 58.632 37.500 0.00 0.00 0.00 3.07
133 134 5.931441 AGCAGAAGACAGTTAAACACATC 57.069 39.130 0.00 0.00 0.00 3.06
134 135 5.009010 CCAAGCAGAAGACAGTTAAACACAT 59.991 40.000 0.00 0.00 0.00 3.21
135 136 4.335315 CCAAGCAGAAGACAGTTAAACACA 59.665 41.667 0.00 0.00 0.00 3.72
136 137 4.574828 TCCAAGCAGAAGACAGTTAAACAC 59.425 41.667 0.00 0.00 0.00 3.32
137 138 4.776349 TCCAAGCAGAAGACAGTTAAACA 58.224 39.130 0.00 0.00 0.00 2.83
138 139 5.057149 TCTCCAAGCAGAAGACAGTTAAAC 58.943 41.667 0.00 0.00 0.00 2.01
139 140 5.290493 TCTCCAAGCAGAAGACAGTTAAA 57.710 39.130 0.00 0.00 0.00 1.52
140 141 4.955811 TCTCCAAGCAGAAGACAGTTAA 57.044 40.909 0.00 0.00 0.00 2.01
141 142 4.955811 TTCTCCAAGCAGAAGACAGTTA 57.044 40.909 0.00 0.00 0.00 2.24
142 143 3.845781 TTCTCCAAGCAGAAGACAGTT 57.154 42.857 0.00 0.00 0.00 3.16
148 149 6.825721 ACAATATTACCTTCTCCAAGCAGAAG 59.174 38.462 4.86 4.86 46.33 2.85
149 150 6.721318 ACAATATTACCTTCTCCAAGCAGAA 58.279 36.000 0.00 0.00 0.00 3.02
150 151 6.313519 ACAATATTACCTTCTCCAAGCAGA 57.686 37.500 0.00 0.00 0.00 4.26
151 152 9.429359 CTATACAATATTACCTTCTCCAAGCAG 57.571 37.037 0.00 0.00 0.00 4.24
152 153 8.934697 ACTATACAATATTACCTTCTCCAAGCA 58.065 33.333 0.00 0.00 0.00 3.91
153 154 9.425577 GACTATACAATATTACCTTCTCCAAGC 57.574 37.037 0.00 0.00 0.00 4.01
175 176 9.716556 AGAAAGTATTCTCAATTCCCTAGACTA 57.283 33.333 0.00 0.00 42.26 2.59
176 177 8.616799 AGAAAGTATTCTCAATTCCCTAGACT 57.383 34.615 0.00 0.00 42.26 3.24
177 178 9.674068 AAAGAAAGTATTCTCAATTCCCTAGAC 57.326 33.333 0.00 0.00 45.19 2.59
181 182 9.593565 AAGAAAAGAAAGTATTCTCAATTCCCT 57.406 29.630 0.00 0.00 45.19 4.20
193 194 9.201989 ACCTCCTTTTCAAAGAAAAGAAAGTAT 57.798 29.630 25.64 13.65 39.04 2.12
194 195 8.589701 ACCTCCTTTTCAAAGAAAAGAAAGTA 57.410 30.769 25.64 10.35 39.04 2.24
195 196 7.482169 ACCTCCTTTTCAAAGAAAAGAAAGT 57.518 32.000 25.64 17.96 39.04 2.66
196 197 8.034804 TCAACCTCCTTTTCAAAGAAAAGAAAG 58.965 33.333 25.64 21.28 39.04 2.62
197 198 7.902087 TCAACCTCCTTTTCAAAGAAAAGAAA 58.098 30.769 25.64 15.70 39.04 2.52
198 199 7.475137 TCAACCTCCTTTTCAAAGAAAAGAA 57.525 32.000 25.64 11.27 39.04 2.52
199 200 7.475137 TTCAACCTCCTTTTCAAAGAAAAGA 57.525 32.000 25.64 14.68 39.04 2.52
200 201 7.064609 GGTTTCAACCTCCTTTTCAAAGAAAAG 59.935 37.037 19.96 19.96 45.75 2.27
201 202 6.876789 GGTTTCAACCTCCTTTTCAAAGAAAA 59.123 34.615 1.08 5.00 45.75 2.29
202 203 6.403049 GGTTTCAACCTCCTTTTCAAAGAAA 58.597 36.000 1.08 0.00 45.75 2.52
203 204 5.972935 GGTTTCAACCTCCTTTTCAAAGAA 58.027 37.500 1.08 0.00 45.75 2.52
204 205 5.592104 GGTTTCAACCTCCTTTTCAAAGA 57.408 39.130 1.08 0.00 45.75 2.52
218 219 0.676736 TCAATTGCCGGGGTTTCAAC 59.323 50.000 2.18 0.00 0.00 3.18
219 220 0.965439 CTCAATTGCCGGGGTTTCAA 59.035 50.000 2.18 0.00 0.00 2.69
220 221 0.111446 TCTCAATTGCCGGGGTTTCA 59.889 50.000 2.18 0.00 0.00 2.69
221 222 1.253100 TTCTCAATTGCCGGGGTTTC 58.747 50.000 2.18 0.00 0.00 2.78
222 223 1.937191 ATTCTCAATTGCCGGGGTTT 58.063 45.000 2.18 0.00 0.00 3.27
223 224 2.025321 AGTATTCTCAATTGCCGGGGTT 60.025 45.455 2.18 0.00 0.00 4.11
224 225 1.564348 AGTATTCTCAATTGCCGGGGT 59.436 47.619 2.18 0.00 0.00 4.95
225 226 2.348411 AGTATTCTCAATTGCCGGGG 57.652 50.000 2.18 0.00 0.00 5.73
226 227 3.947834 AGAAAGTATTCTCAATTGCCGGG 59.052 43.478 2.18 0.00 42.26 5.73
227 228 5.567138 AAGAAAGTATTCTCAATTGCCGG 57.433 39.130 0.00 0.00 45.19 6.13
228 229 7.308435 AGAAAAGAAAGTATTCTCAATTGCCG 58.692 34.615 0.00 0.00 45.19 5.69
229 230 9.481340 AAAGAAAAGAAAGTATTCTCAATTGCC 57.519 29.630 0.00 0.00 45.19 4.52
240 241 9.201989 ACCTCCTTTTCAAAGAAAAGAAAGTAT 57.798 29.630 25.64 13.65 39.04 2.12
241 242 8.589701 ACCTCCTTTTCAAAGAAAAGAAAGTA 57.410 30.769 25.64 10.35 39.04 2.24
242 243 7.482169 ACCTCCTTTTCAAAGAAAAGAAAGT 57.518 32.000 25.64 17.96 39.04 2.66
243 244 8.034804 TCAACCTCCTTTTCAAAGAAAAGAAAG 58.965 33.333 25.64 21.28 39.04 2.62
244 245 7.902087 TCAACCTCCTTTTCAAAGAAAAGAAA 58.098 30.769 25.64 15.70 39.04 2.52
245 246 7.475137 TCAACCTCCTTTTCAAAGAAAAGAA 57.525 32.000 25.64 11.27 39.04 2.52
246 247 7.475137 TTCAACCTCCTTTTCAAAGAAAAGA 57.525 32.000 25.64 14.68 39.04 2.52
247 248 7.064609 GGTTTCAACCTCCTTTTCAAAGAAAAG 59.935 37.037 19.96 19.96 45.75 2.27
248 249 6.876789 GGTTTCAACCTCCTTTTCAAAGAAAA 59.123 34.615 1.08 5.00 45.75 2.29
249 250 6.403049 GGTTTCAACCTCCTTTTCAAAGAAA 58.597 36.000 1.08 0.00 45.75 2.52
250 251 5.972935 GGTTTCAACCTCCTTTTCAAAGAA 58.027 37.500 1.08 0.00 45.75 2.52
251 252 5.592104 GGTTTCAACCTCCTTTTCAAAGA 57.408 39.130 1.08 0.00 45.75 2.52
265 266 1.211709 CGATTGCCGGGGTTTCAAC 59.788 57.895 2.18 0.00 33.91 3.18
266 267 0.958382 CTCGATTGCCGGGGTTTCAA 60.958 55.000 2.18 0.00 39.14 2.69
267 268 1.376683 CTCGATTGCCGGGGTTTCA 60.377 57.895 2.18 0.00 39.14 2.69
268 269 1.078708 TCTCGATTGCCGGGGTTTC 60.079 57.895 2.18 0.00 39.77 2.78
269 270 1.376812 GTCTCGATTGCCGGGGTTT 60.377 57.895 2.18 0.00 39.77 3.27
270 271 1.910580 ATGTCTCGATTGCCGGGGTT 61.911 55.000 2.18 0.00 39.77 4.11
271 272 1.046472 TATGTCTCGATTGCCGGGGT 61.046 55.000 2.18 0.00 39.77 4.95
272 273 0.321671 ATATGTCTCGATTGCCGGGG 59.678 55.000 2.18 0.00 39.77 5.73
273 274 2.069273 GAATATGTCTCGATTGCCGGG 58.931 52.381 2.18 0.00 40.97 5.73
274 275 2.069273 GGAATATGTCTCGATTGCCGG 58.931 52.381 0.00 0.00 39.14 6.13
275 276 2.069273 GGGAATATGTCTCGATTGCCG 58.931 52.381 0.00 0.00 34.39 5.69
276 277 3.409026 AGGGAATATGTCTCGATTGCC 57.591 47.619 0.00 0.00 42.27 4.52
277 278 3.430218 CGAAGGGAATATGTCTCGATTGC 59.570 47.826 0.00 0.00 0.00 3.56
278 279 4.621991 ACGAAGGGAATATGTCTCGATTG 58.378 43.478 0.00 0.00 0.00 2.67
279 280 4.939052 ACGAAGGGAATATGTCTCGATT 57.061 40.909 0.00 0.00 0.00 3.34
280 281 5.710567 TGATACGAAGGGAATATGTCTCGAT 59.289 40.000 0.00 0.00 0.00 3.59
281 282 5.067954 TGATACGAAGGGAATATGTCTCGA 58.932 41.667 0.00 0.00 0.00 4.04
282 283 5.372547 TGATACGAAGGGAATATGTCTCG 57.627 43.478 0.00 0.00 0.00 4.04
283 284 8.608844 ATTTTGATACGAAGGGAATATGTCTC 57.391 34.615 0.00 0.00 0.00 3.36
284 285 8.980481 AATTTTGATACGAAGGGAATATGTCT 57.020 30.769 0.00 0.00 0.00 3.41
291 292 9.238368 ACATCTTAAATTTTGATACGAAGGGAA 57.762 29.630 0.00 0.00 0.00 3.97
309 310 8.943002 GCTAAACTAGCCTACAAAACATCTTAA 58.057 33.333 0.00 0.00 45.95 1.85
357 358 6.492429 TGTTGTCATGTTACTACCTCTGTACT 59.508 38.462 0.00 0.00 0.00 2.73
408 409 1.831736 AGGGATCGGTCGAGTTTCATT 59.168 47.619 0.00 0.00 0.00 2.57
414 415 0.393537 AACGTAGGGATCGGTCGAGT 60.394 55.000 0.00 0.00 0.00 4.18
421 422 0.810031 CTTGGGCAACGTAGGGATCG 60.810 60.000 0.00 0.00 37.60 3.69
435 436 2.752903 CACTTATTTTCGTCCCCTTGGG 59.247 50.000 0.00 0.00 46.11 4.12
436 437 2.752903 CCACTTATTTTCGTCCCCTTGG 59.247 50.000 0.00 0.00 0.00 3.61
437 438 3.190535 CACCACTTATTTTCGTCCCCTTG 59.809 47.826 0.00 0.00 0.00 3.61
438 439 3.073356 TCACCACTTATTTTCGTCCCCTT 59.927 43.478 0.00 0.00 0.00 3.95
467 468 3.869912 GCTTGCCTCTCCTAATTGACACA 60.870 47.826 0.00 0.00 0.00 3.72
468 469 2.680339 GCTTGCCTCTCCTAATTGACAC 59.320 50.000 0.00 0.00 0.00 3.67
475 476 0.747255 CGCTAGCTTGCCTCTCCTAA 59.253 55.000 14.61 0.00 0.00 2.69
483 484 2.830370 ATTGGCCGCTAGCTTGCC 60.830 61.111 28.71 28.71 45.56 4.52
535 536 7.820648 TCTTCTTCTTAATGAAATGCAGGAAC 58.179 34.615 0.00 0.00 33.79 3.62
553 554 4.344359 AACTGGACCAACTCTCTTCTTC 57.656 45.455 0.00 0.00 0.00 2.87
581 582 2.742348 AGGTTTTCAGGTCCGGTTTTT 58.258 42.857 0.00 0.00 0.00 1.94
586 587 2.554370 TGTTAGGTTTTCAGGTCCGG 57.446 50.000 0.00 0.00 0.00 5.14
591 592 4.524328 AGCCAAGAATGTTAGGTTTTCAGG 59.476 41.667 0.00 0.00 0.00 3.86
593 594 7.450014 TGATTAGCCAAGAATGTTAGGTTTTCA 59.550 33.333 0.00 0.00 0.00 2.69
599 600 4.823989 CCCTGATTAGCCAAGAATGTTAGG 59.176 45.833 0.00 0.00 0.00 2.69
604 605 5.394553 GGTTTTCCCTGATTAGCCAAGAATG 60.395 44.000 0.00 0.00 0.00 2.67
612 613 3.945285 TCATTCGGTTTTCCCTGATTAGC 59.055 43.478 0.00 0.00 36.42 3.09
637 638 6.811665 CGTTTTCTTTTCTCTTCTTTTTGGGT 59.188 34.615 0.00 0.00 0.00 4.51
678 679 1.786441 TGTCCCCATCCCAAGTTTCTT 59.214 47.619 0.00 0.00 0.00 2.52
681 682 1.786441 TCTTGTCCCCATCCCAAGTTT 59.214 47.619 0.00 0.00 37.45 2.66
692 693 1.745653 GCTAGCATTTGTCTTGTCCCC 59.254 52.381 10.63 0.00 0.00 4.81
697 698 0.099436 GGCCGCTAGCATTTGTCTTG 59.901 55.000 16.45 0.00 46.50 3.02
725 726 2.049888 AGTACTAGTAGTCCCGCCAC 57.950 55.000 5.96 0.00 0.00 5.01
765 766 1.544724 TTGTGGAGGCTATGTTTGGC 58.455 50.000 0.00 0.00 0.00 4.52
817 818 2.525368 GAGGGTTTATTTGGGCACAGT 58.475 47.619 0.00 0.00 0.00 3.55
819 820 1.431243 AGGAGGGTTTATTTGGGCACA 59.569 47.619 0.00 0.00 0.00 4.57
1170 1178 1.450312 CTTGCTGGATGACCCGTCC 60.450 63.158 0.00 0.00 39.80 4.79
1266 1274 1.066215 ACCTGCTTGCACATCATCGTA 60.066 47.619 0.00 0.00 0.00 3.43
1482 1490 0.902984 TGAGCTCCTCCTTGGCGTAA 60.903 55.000 12.15 0.00 35.26 3.18
1516 1524 1.002257 TGTCATTGGCGTCCATGCT 60.002 52.632 0.00 0.00 31.53 3.79
1623 1631 2.526304 TCACCTTGTCCTTGAACTCG 57.474 50.000 0.00 0.00 0.00 4.18
1648 1656 1.918957 CTCCTTCCCCTTGAGGAACAT 59.081 52.381 0.00 0.00 41.08 2.71
1649 1657 1.362224 CTCCTTCCCCTTGAGGAACA 58.638 55.000 0.00 0.00 41.08 3.18
1878 1886 2.043852 TTGGCCACCACCACGTTT 60.044 55.556 3.88 0.00 40.19 3.60
1988 1996 2.470983 TTCAGACGGACATGCAATCA 57.529 45.000 0.00 0.00 0.00 2.57
1989 1997 3.058293 TGTTTTCAGACGGACATGCAATC 60.058 43.478 0.00 0.00 0.00 2.67
1990 1998 2.884012 TGTTTTCAGACGGACATGCAAT 59.116 40.909 0.00 0.00 0.00 3.56
1991 1999 2.293170 TGTTTTCAGACGGACATGCAA 58.707 42.857 0.00 0.00 0.00 4.08
2278 2286 0.370273 CGGATTAGTCAGCAACGTGC 59.630 55.000 0.00 0.00 45.46 5.34
2806 2817 1.153549 GAGCGTCTTGAGCCCGAAT 60.154 57.895 0.00 0.00 34.64 3.34
2886 2897 3.866651 CTGATCACCTTCTTGTACCCTG 58.133 50.000 0.00 0.00 0.00 4.45
3072 3083 4.511246 AGGATGCATGCACCCCGG 62.511 66.667 28.37 0.00 26.60 5.73
3134 3145 3.194272 AAACAAAGCTCGCCCGCAC 62.194 57.895 0.00 0.00 0.00 5.34
3248 3260 9.826574 GTAATCAGGGAAATACATGTACAAGTA 57.173 33.333 12.92 12.92 0.00 2.24
3306 3318 3.370840 TTGTGGGGATCATCTTCCTTG 57.629 47.619 0.00 0.00 35.97 3.61
3320 3332 1.623311 GGGGGAAAGTCAATTTGTGGG 59.377 52.381 0.00 0.00 0.00 4.61
3354 3367 2.092103 TGCCCTAATCGCCAAATAGGTT 60.092 45.455 0.00 0.00 40.61 3.50
3359 3372 0.738389 CGTTGCCCTAATCGCCAAAT 59.262 50.000 0.00 0.00 0.00 2.32
3361 3374 1.747367 CCGTTGCCCTAATCGCCAA 60.747 57.895 0.00 0.00 0.00 4.52
3412 3425 1.542030 GATCAGTCACCGACACACTCT 59.458 52.381 0.00 0.00 34.60 3.24
3423 3436 4.808364 GCAGTTATCTTCCTGATCAGTCAC 59.192 45.833 21.11 4.46 36.65 3.67
3441 3454 0.606401 CACGACCAAGGGATGCAGTT 60.606 55.000 0.00 0.00 0.00 3.16
3452 3465 0.600782 GCGTTACCCTTCACGACCAA 60.601 55.000 0.00 0.00 38.76 3.67
3453 3466 1.005867 GCGTTACCCTTCACGACCA 60.006 57.895 0.00 0.00 38.76 4.02
3454 3467 0.600782 TTGCGTTACCCTTCACGACC 60.601 55.000 0.00 0.00 38.76 4.79
3455 3468 0.509929 GTTGCGTTACCCTTCACGAC 59.490 55.000 0.00 0.00 38.76 4.34
3544 3557 2.069273 CACGAACATCGCTTCTTCCTT 58.931 47.619 0.00 0.00 45.12 3.36
3561 3574 3.266964 CCATTGTGGTGGAGCACG 58.733 61.111 4.63 0.00 42.02 5.34
3610 3623 6.316390 ACTGGAGATCGTTTTGTTATGGAATC 59.684 38.462 0.00 0.00 0.00 2.52
3700 4441 6.791303 TGTTTGGCCTTAAATTTAGCGATAG 58.209 36.000 3.32 0.00 0.00 2.08
3701 4442 6.761099 TGTTTGGCCTTAAATTTAGCGATA 57.239 33.333 3.32 0.00 0.00 2.92
3702 4443 5.652994 TGTTTGGCCTTAAATTTAGCGAT 57.347 34.783 3.32 0.00 0.00 4.58
3735 4476 2.359169 GCGATCCCTCCCAGACACA 61.359 63.158 0.00 0.00 0.00 3.72
3757 4498 2.804527 ACTGCATGCTTACTGATATGCG 59.195 45.455 20.33 0.00 46.61 4.73
3786 4527 4.942761 ACATGTGTGCCTCAAAATCTTT 57.057 36.364 0.00 0.00 0.00 2.52
3843 4584 0.259938 AGATTCACCATCCTTGCCCC 59.740 55.000 0.00 0.00 31.20 5.80
3905 4646 5.339990 GTTGTGTGCTTGTCAATTTACTGT 58.660 37.500 0.00 0.00 0.00 3.55
3946 4687 2.852075 TCAAGAACCCGCCCACCT 60.852 61.111 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.