Multiple sequence alignment - TraesCS5A01G216000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G216000 chr5A 100.000 5357 0 0 1 5357 432227564 432232920 0.000000e+00 9893.0
1 TraesCS5A01G216000 chr5A 90.080 625 53 3 22 638 162405135 162405758 0.000000e+00 802.0
2 TraesCS5A01G216000 chr5A 86.154 325 30 7 1638 1955 69188765 69189081 2.390000e-88 337.0
3 TraesCS5A01G216000 chr5A 85.231 325 33 7 1638 1955 69190816 69191132 2.410000e-83 320.0
4 TraesCS5A01G216000 chr5A 85.556 90 11 2 693 782 540056777 540056864 5.710000e-15 93.5
5 TraesCS5A01G216000 chr5D 94.448 1621 52 13 2958 4563 331574284 331575881 0.000000e+00 2460.0
6 TraesCS5A01G216000 chr5D 91.255 1578 80 15 1247 2810 331572717 331574250 0.000000e+00 2097.0
7 TraesCS5A01G216000 chr5D 90.023 441 10 12 826 1234 331572226 331572664 1.700000e-149 540.0
8 TraesCS5A01G216000 chr5D 93.165 278 13 4 5024 5301 331576116 331576387 2.320000e-108 403.0
9 TraesCS5A01G216000 chr5D 90.566 265 21 3 4695 4956 126262687 126262950 1.100000e-91 348.0
10 TraesCS5A01G216000 chr5D 98.810 84 1 0 2820 2903 77746229 77746312 3.340000e-32 150.0
11 TraesCS5A01G216000 chr5D 94.624 93 4 1 2809 2900 549021661 549021753 5.590000e-30 143.0
12 TraesCS5A01G216000 chr5D 100.000 32 0 0 2899 2930 331574249 331574280 5.790000e-05 60.2
13 TraesCS5A01G216000 chr5D 97.059 34 1 0 5306 5339 99460339 99460306 2.080000e-04 58.4
14 TraesCS5A01G216000 chr5B 92.891 1041 41 11 3605 4620 387366788 387367820 0.000000e+00 1482.0
15 TraesCS5A01G216000 chr5B 95.513 780 27 2 2032 2810 387365109 387365881 0.000000e+00 1240.0
16 TraesCS5A01G216000 chr5B 97.376 724 17 2 2899 3621 387365880 387366602 0.000000e+00 1230.0
17 TraesCS5A01G216000 chr5B 88.931 795 52 17 1254 2033 387364175 387364948 0.000000e+00 948.0
18 TraesCS5A01G216000 chr5B 90.271 627 51 6 22 640 611825797 611826421 0.000000e+00 811.0
19 TraesCS5A01G216000 chr5B 92.891 422 14 8 824 1233 387363701 387364118 2.760000e-167 599.0
20 TraesCS5A01G216000 chr5B 88.768 276 28 3 4687 4960 529528302 529528028 8.600000e-88 335.0
21 TraesCS5A01G216000 chr5B 93.627 204 13 0 5154 5357 387369632 387369835 6.740000e-79 305.0
22 TraesCS5A01G216000 chr5B 96.951 164 5 0 4953 5116 387369468 387369631 5.290000e-70 276.0
23 TraesCS5A01G216000 chr5B 85.156 128 13 2 703 824 77838971 77839098 5.630000e-25 126.0
24 TraesCS5A01G216000 chr4D 91.840 625 41 4 22 638 363670572 363669950 0.000000e+00 863.0
25 TraesCS5A01G216000 chr4D 94.949 99 4 1 2821 2919 218516204 218516301 2.580000e-33 154.0
26 TraesCS5A01G216000 chr1D 90.953 619 53 2 22 638 351953449 351952832 0.000000e+00 830.0
27 TraesCS5A01G216000 chr1D 100.000 83 0 0 2821 2903 440050363 440050445 2.580000e-33 154.0
28 TraesCS5A01G216000 chr1D 100.000 81 0 0 2821 2901 35756947 35756867 3.340000e-32 150.0
29 TraesCS5A01G216000 chr1D 93.684 95 4 2 2821 2914 289475411 289475318 2.010000e-29 141.0
30 TraesCS5A01G216000 chr3A 90.079 635 53 4 18 643 13156939 13156306 0.000000e+00 815.0
31 TraesCS5A01G216000 chr3A 90.262 267 21 4 4698 4960 161457422 161457157 1.430000e-90 344.0
32 TraesCS5A01G216000 chr4A 90.240 625 51 4 22 638 595871204 595870582 0.000000e+00 808.0
33 TraesCS5A01G216000 chr4A 90.096 626 54 3 21 638 622279635 622280260 0.000000e+00 806.0
34 TraesCS5A01G216000 chr4A 89.850 266 22 4 4695 4956 111436103 111436367 2.390000e-88 337.0
35 TraesCS5A01G216000 chr4A 85.538 325 32 6 1638 1955 375820462 375820778 5.170000e-85 326.0
36 TraesCS5A01G216000 chr4A 87.255 102 10 1 704 802 494116778 494116677 4.390000e-21 113.0
37 TraesCS5A01G216000 chr6A 90.276 617 56 3 22 638 329082810 329083422 0.000000e+00 804.0
38 TraesCS5A01G216000 chr6A 89.968 628 54 3 22 641 384584535 384583909 0.000000e+00 802.0
39 TraesCS5A01G216000 chr6A 86.154 325 29 9 1638 1955 2982575 2982890 2.390000e-88 337.0
40 TraesCS5A01G216000 chr6A 91.429 105 5 4 2821 2924 97081396 97081295 2.010000e-29 141.0
41 TraesCS5A01G216000 chr6A 85.470 117 11 2 709 819 377177867 377177983 3.390000e-22 117.0
42 TraesCS5A01G216000 chr7B 90.494 263 20 5 4697 4955 598955038 598954777 5.140000e-90 342.0
43 TraesCS5A01G216000 chr7B 87.952 83 10 0 701 783 208728606 208728524 1.230000e-16 99.0
44 TraesCS5A01G216000 chr3D 90.494 263 20 5 4697 4955 603703429 603703168 5.140000e-90 342.0
45 TraesCS5A01G216000 chrUn 89.925 268 22 4 4695 4958 108799234 108799500 1.850000e-89 340.0
46 TraesCS5A01G216000 chrUn 90.385 52 4 1 5306 5357 276861691 276861641 3.460000e-07 67.6
47 TraesCS5A01G216000 chrUn 90.385 52 4 1 5306 5357 276891423 276891373 3.460000e-07 67.6
48 TraesCS5A01G216000 chr2D 89.338 272 23 6 4688 4955 204112953 204112684 2.390000e-88 337.0
49 TraesCS5A01G216000 chr2D 97.753 89 2 0 2821 2909 436111344 436111432 2.580000e-33 154.0
50 TraesCS5A01G216000 chr2D 95.604 91 4 0 2821 2911 54674246 54674336 4.320000e-31 147.0
51 TraesCS5A01G216000 chr2D 89.362 47 3 1 5306 5352 512906035 512905991 2.080000e-04 58.4
52 TraesCS5A01G216000 chr7D 88.971 272 25 4 4689 4956 445784694 445784964 1.110000e-86 331.0
53 TraesCS5A01G216000 chr7D 91.463 82 7 0 702 783 77039244 77039325 4.390000e-21 113.0
54 TraesCS5A01G216000 chr7D 93.878 49 3 0 5306 5354 34316504 34316552 2.070000e-09 75.0
55 TraesCS5A01G216000 chr7D 87.500 48 5 1 5307 5354 623692516 623692562 3.000000e-03 54.7
56 TraesCS5A01G216000 chr2A 84.923 325 34 7 1638 1955 542029008 542029324 1.120000e-81 315.0
57 TraesCS5A01G216000 chr2A 86.538 104 11 1 703 803 21041460 21041357 1.580000e-20 111.0
58 TraesCS5A01G216000 chr2A 86.000 100 8 2 723 816 21041372 21041273 9.490000e-18 102.0
59 TraesCS5A01G216000 chr2A 83.784 111 12 3 708 812 217056466 217056356 3.410000e-17 100.0
60 TraesCS5A01G216000 chr2B 84.277 318 28 7 1641 1955 160376196 160376494 1.890000e-74 291.0
61 TraesCS5A01G216000 chr3B 83.333 318 29 10 1641 1955 557620440 557620736 6.840000e-69 272.0
62 TraesCS5A01G216000 chr6B 88.889 153 17 0 1098 1250 334482775 334482623 7.080000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G216000 chr5A 432227564 432232920 5356 False 9893.000000 9893 100.000000 1 5357 1 chr5A.!!$F2 5356
1 TraesCS5A01G216000 chr5A 162405135 162405758 623 False 802.000000 802 90.080000 22 638 1 chr5A.!!$F1 616
2 TraesCS5A01G216000 chr5A 69188765 69191132 2367 False 328.500000 337 85.692500 1638 1955 2 chr5A.!!$F4 317
3 TraesCS5A01G216000 chr5D 331572226 331576387 4161 False 1112.040000 2460 93.778200 826 5301 5 chr5D.!!$F4 4475
4 TraesCS5A01G216000 chr5B 387363701 387369835 6134 False 868.571429 1482 94.025714 824 5357 7 chr5B.!!$F3 4533
5 TraesCS5A01G216000 chr5B 611825797 611826421 624 False 811.000000 811 90.271000 22 640 1 chr5B.!!$F2 618
6 TraesCS5A01G216000 chr4D 363669950 363670572 622 True 863.000000 863 91.840000 22 638 1 chr4D.!!$R1 616
7 TraesCS5A01G216000 chr1D 351952832 351953449 617 True 830.000000 830 90.953000 22 638 1 chr1D.!!$R3 616
8 TraesCS5A01G216000 chr3A 13156306 13156939 633 True 815.000000 815 90.079000 18 643 1 chr3A.!!$R1 625
9 TraesCS5A01G216000 chr4A 595870582 595871204 622 True 808.000000 808 90.240000 22 638 1 chr4A.!!$R2 616
10 TraesCS5A01G216000 chr4A 622279635 622280260 625 False 806.000000 806 90.096000 21 638 1 chr4A.!!$F3 617
11 TraesCS5A01G216000 chr6A 329082810 329083422 612 False 804.000000 804 90.276000 22 638 1 chr6A.!!$F2 616
12 TraesCS5A01G216000 chr6A 384583909 384584535 626 True 802.000000 802 89.968000 22 641 1 chr6A.!!$R2 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
772 793 0.034089 AACCCAACAGATAGCTGGCC 60.034 55.0 13.45 0.0 46.60 5.36 F
1414 1513 0.035056 ATTAGCAGCAAGGCTTCGGT 60.035 50.0 0.00 0.0 42.71 4.69 F
2824 3109 0.178941 TAATACTCCCTCCGGCCTCC 60.179 60.0 0.00 0.0 0.00 4.30 F
3318 3604 0.108756 GCAGGTAGGTTCACGAGGAC 60.109 60.0 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2313 2597 0.168128 AAAACTGGATTGTAGCGCGC 59.832 50.0 26.66 26.66 0.00 6.86 R
2886 3171 0.106116 ACCATCTACTCCCTCCGTCC 60.106 60.0 0.00 0.00 0.00 4.79 R
4084 4573 0.109153 CGGGATGGCCATCAAGATCA 59.891 55.0 39.50 1.52 39.54 2.92 R
5018 7324 0.733909 GCTGTGCAAAATCCGCCTTC 60.734 55.0 0.00 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 4.457466 ACCATACCGAAAATAAGCCGAAT 58.543 39.130 0.00 0.00 0.00 3.34
116 132 8.000127 GGTTTTTATGGGTTCTGGTATGGTATA 59.000 37.037 0.00 0.00 0.00 1.47
190 206 4.023365 CCGAACGGTTAACCAAATAAACCA 60.023 41.667 24.14 0.00 42.31 3.67
473 494 9.360093 ACATTTTCAAATTCACGTTAACTTTGA 57.640 25.926 13.14 13.14 34.87 2.69
512 533 7.862512 ACCGAAACCATACCGAAATAATTTA 57.137 32.000 0.00 0.00 0.00 1.40
643 664 2.433838 CGCACAGAGTGAGCTGGG 60.434 66.667 0.00 0.00 42.24 4.45
645 666 2.433838 CACAGAGTGAGCTGGGCG 60.434 66.667 0.00 0.00 40.20 6.13
646 667 4.385405 ACAGAGTGAGCTGGGCGC 62.385 66.667 0.00 0.00 40.20 6.53
667 688 2.035783 GGCCCAACCCAACCTCTC 59.964 66.667 0.00 0.00 0.00 3.20
668 689 2.539081 GGCCCAACCCAACCTCTCT 61.539 63.158 0.00 0.00 0.00 3.10
669 690 1.303643 GCCCAACCCAACCTCTCTG 60.304 63.158 0.00 0.00 0.00 3.35
670 691 1.303643 CCCAACCCAACCTCTCTGC 60.304 63.158 0.00 0.00 0.00 4.26
671 692 1.303643 CCAACCCAACCTCTCTGCC 60.304 63.158 0.00 0.00 0.00 4.85
672 693 1.303643 CAACCCAACCTCTCTGCCC 60.304 63.158 0.00 0.00 0.00 5.36
673 694 2.539081 AACCCAACCTCTCTGCCCC 61.539 63.158 0.00 0.00 0.00 5.80
674 695 4.101448 CCCAACCTCTCTGCCCCG 62.101 72.222 0.00 0.00 0.00 5.73
675 696 3.322466 CCAACCTCTCTGCCCCGT 61.322 66.667 0.00 0.00 0.00 5.28
676 697 2.266055 CAACCTCTCTGCCCCGTC 59.734 66.667 0.00 0.00 0.00 4.79
677 698 3.382832 AACCTCTCTGCCCCGTCG 61.383 66.667 0.00 0.00 0.00 5.12
688 709 4.444838 CCCGTCGCCGTCCATTCA 62.445 66.667 0.00 0.00 0.00 2.57
689 710 3.186047 CCGTCGCCGTCCATTCAC 61.186 66.667 0.00 0.00 0.00 3.18
690 711 2.431771 CGTCGCCGTCCATTCACA 60.432 61.111 0.00 0.00 0.00 3.58
691 712 2.726691 CGTCGCCGTCCATTCACAC 61.727 63.158 0.00 0.00 0.00 3.82
692 713 2.431771 TCGCCGTCCATTCACACG 60.432 61.111 0.00 0.00 35.72 4.49
693 714 4.147322 CGCCGTCCATTCACACGC 62.147 66.667 0.00 0.00 34.58 5.34
694 715 3.799755 GCCGTCCATTCACACGCC 61.800 66.667 0.00 0.00 34.58 5.68
695 716 2.358125 CCGTCCATTCACACGCCA 60.358 61.111 0.00 0.00 34.58 5.69
696 717 2.677003 CCGTCCATTCACACGCCAC 61.677 63.158 0.00 0.00 34.58 5.01
697 718 2.860293 GTCCATTCACACGCCACG 59.140 61.111 0.00 0.00 0.00 4.94
698 719 3.047280 TCCATTCACACGCCACGC 61.047 61.111 0.00 0.00 0.00 5.34
699 720 3.353029 CCATTCACACGCCACGCA 61.353 61.111 0.00 0.00 0.00 5.24
700 721 2.127270 CATTCACACGCCACGCAC 60.127 61.111 0.00 0.00 0.00 5.34
701 722 3.711842 ATTCACACGCCACGCACG 61.712 61.111 0.00 0.00 0.00 5.34
747 768 7.873699 AGGCACCTACCTTTATGTCTATAAT 57.126 36.000 0.00 0.00 36.28 1.28
748 769 8.967779 AGGCACCTACCTTTATGTCTATAATA 57.032 34.615 0.00 0.00 36.28 0.98
749 770 9.562226 AGGCACCTACCTTTATGTCTATAATAT 57.438 33.333 0.00 0.00 36.28 1.28
750 771 9.601217 GGCACCTACCTTTATGTCTATAATATG 57.399 37.037 0.00 0.00 0.00 1.78
762 783 8.908786 ATGTCTATAATATGTGAACCCAACAG 57.091 34.615 0.00 0.00 0.00 3.16
763 784 8.084985 TGTCTATAATATGTGAACCCAACAGA 57.915 34.615 0.00 0.00 0.00 3.41
764 785 8.713971 TGTCTATAATATGTGAACCCAACAGAT 58.286 33.333 0.00 0.00 0.00 2.90
767 788 7.986085 ATAATATGTGAACCCAACAGATAGC 57.014 36.000 0.00 0.00 29.62 2.97
768 789 5.636903 ATATGTGAACCCAACAGATAGCT 57.363 39.130 0.00 0.00 29.62 3.32
770 791 2.290260 TGTGAACCCAACAGATAGCTGG 60.290 50.000 13.45 0.00 46.60 4.85
771 792 1.340017 TGAACCCAACAGATAGCTGGC 60.340 52.381 13.45 0.00 46.60 4.85
772 793 0.034089 AACCCAACAGATAGCTGGCC 60.034 55.000 13.45 0.00 46.60 5.36
773 794 1.152881 CCCAACAGATAGCTGGCCC 60.153 63.158 13.45 0.00 46.60 5.80
774 795 1.609239 CCAACAGATAGCTGGCCCA 59.391 57.895 13.45 0.00 46.60 5.36
775 796 0.749454 CCAACAGATAGCTGGCCCAC 60.749 60.000 13.45 0.00 46.60 4.61
776 797 0.035152 CAACAGATAGCTGGCCCACA 60.035 55.000 13.45 0.00 46.60 4.17
777 798 0.921896 AACAGATAGCTGGCCCACAT 59.078 50.000 13.45 0.00 46.60 3.21
778 799 0.182061 ACAGATAGCTGGCCCACATG 59.818 55.000 13.45 0.00 46.60 3.21
779 800 0.182061 CAGATAGCTGGCCCACATGT 59.818 55.000 0.00 0.00 38.51 3.21
780 801 0.471617 AGATAGCTGGCCCACATGTC 59.528 55.000 0.00 0.00 0.00 3.06
781 802 0.181114 GATAGCTGGCCCACATGTCA 59.819 55.000 0.00 0.00 0.00 3.58
782 803 0.182061 ATAGCTGGCCCACATGTCAG 59.818 55.000 0.00 7.70 0.00 3.51
783 804 3.446570 GCTGGCCCACATGTCAGC 61.447 66.667 18.17 18.17 44.34 4.26
784 805 2.753043 CTGGCCCACATGTCAGCC 60.753 66.667 23.23 23.23 45.96 4.85
785 806 4.365111 TGGCCCACATGTCAGCCC 62.365 66.667 25.71 12.17 45.14 5.19
786 807 4.365111 GGCCCACATGTCAGCCCA 62.365 66.667 20.55 0.00 39.60 5.36
787 808 2.283101 GCCCACATGTCAGCCCAA 60.283 61.111 0.00 0.00 0.00 4.12
788 809 1.907807 GCCCACATGTCAGCCCAAA 60.908 57.895 0.00 0.00 0.00 3.28
789 810 1.470996 GCCCACATGTCAGCCCAAAA 61.471 55.000 0.00 0.00 0.00 2.44
790 811 1.047002 CCCACATGTCAGCCCAAAAA 58.953 50.000 0.00 0.00 0.00 1.94
791 812 1.270252 CCCACATGTCAGCCCAAAAAC 60.270 52.381 0.00 0.00 0.00 2.43
792 813 1.411977 CCACATGTCAGCCCAAAAACA 59.588 47.619 0.00 0.00 0.00 2.83
793 814 2.037511 CCACATGTCAGCCCAAAAACAT 59.962 45.455 0.00 0.00 32.73 2.71
795 816 3.389925 CATGTCAGCCCAAAAACATGT 57.610 42.857 0.00 0.00 42.45 3.21
796 817 2.886862 TGTCAGCCCAAAAACATGTG 57.113 45.000 0.00 0.00 0.00 3.21
797 818 1.202510 TGTCAGCCCAAAAACATGTGC 60.203 47.619 0.00 0.00 0.00 4.57
798 819 0.392336 TCAGCCCAAAAACATGTGCC 59.608 50.000 0.00 0.00 0.00 5.01
799 820 0.393820 CAGCCCAAAAACATGTGCCT 59.606 50.000 0.00 0.00 0.00 4.75
800 821 1.130777 AGCCCAAAAACATGTGCCTT 58.869 45.000 0.00 0.00 0.00 4.35
801 822 1.490069 AGCCCAAAAACATGTGCCTTT 59.510 42.857 0.00 0.00 0.00 3.11
802 823 1.603326 GCCCAAAAACATGTGCCTTTG 59.397 47.619 16.08 16.08 0.00 2.77
803 824 1.603326 CCCAAAAACATGTGCCTTTGC 59.397 47.619 17.01 0.00 38.26 3.68
812 833 2.203337 TGCCTTTGCACCGAAGCT 60.203 55.556 0.00 0.00 44.23 3.74
813 834 2.256461 GCCTTTGCACCGAAGCTG 59.744 61.111 0.00 0.00 37.47 4.24
814 835 2.555547 GCCTTTGCACCGAAGCTGT 61.556 57.895 0.00 0.00 37.47 4.40
815 836 1.283793 CCTTTGCACCGAAGCTGTG 59.716 57.895 0.00 0.00 36.79 3.66
816 837 1.447317 CCTTTGCACCGAAGCTGTGT 61.447 55.000 4.76 0.00 36.11 3.72
817 838 0.040958 CTTTGCACCGAAGCTGTGTC 60.041 55.000 4.76 0.00 36.11 3.67
818 839 1.444119 TTTGCACCGAAGCTGTGTCC 61.444 55.000 4.76 0.00 36.11 4.02
819 840 2.031163 GCACCGAAGCTGTGTCCT 59.969 61.111 4.76 0.00 36.11 3.85
820 841 2.029844 GCACCGAAGCTGTGTCCTC 61.030 63.158 4.76 0.00 36.11 3.71
821 842 1.374758 CACCGAAGCTGTGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
822 843 2.125912 CCGAAGCTGTGTCCTCCG 60.126 66.667 0.00 0.00 0.00 4.63
823 844 2.811317 CGAAGCTGTGTCCTCCGC 60.811 66.667 0.00 0.00 0.00 5.54
824 845 2.343758 GAAGCTGTGTCCTCCGCA 59.656 61.111 0.00 0.00 0.00 5.69
904 945 2.358737 CCTCCAAGACACCACGCC 60.359 66.667 0.00 0.00 0.00 5.68
922 967 3.775654 CGCCCCTCCACCAGACTC 61.776 72.222 0.00 0.00 0.00 3.36
947 992 0.953960 GGCATTTATACCTCCGGCGG 60.954 60.000 22.51 22.51 0.00 6.13
1000 1046 4.664677 CCATCGACCGCCCGATCC 62.665 72.222 7.12 0.00 46.26 3.36
1229 1287 2.757099 TAAGGCCGACCCGACCTC 60.757 66.667 0.00 0.00 39.14 3.85
1234 1292 3.450115 CCGACCCGACCTCACCTC 61.450 72.222 0.00 0.00 0.00 3.85
1236 1294 3.450115 GACCCGACCTCACCTCCG 61.450 72.222 0.00 0.00 0.00 4.63
1245 1303 2.285368 TCACCTCCGCCATCCCTT 60.285 61.111 0.00 0.00 0.00 3.95
1248 1306 3.154473 CCTCCGCCATCCCTTCGA 61.154 66.667 0.00 0.00 0.00 3.71
1255 1348 1.613925 CGCCATCCCTTCGAGAGATTA 59.386 52.381 0.00 0.00 41.60 1.75
1260 1353 5.046950 GCCATCCCTTCGAGAGATTATTAGT 60.047 44.000 0.00 0.00 41.60 2.24
1285 1378 0.175989 CGTAGAAGGGAGAGGTTGCC 59.824 60.000 0.00 0.00 37.61 4.52
1289 1382 2.470938 GAAGGGAGAGGTTGCCGCTT 62.471 60.000 0.00 0.00 43.23 4.68
1290 1383 2.034221 GGGAGAGGTTGCCGCTTT 59.966 61.111 0.00 0.00 32.83 3.51
1292 1385 2.563427 GAGAGGTTGCCGCTTTGC 59.437 61.111 0.00 0.00 32.83 3.68
1324 1417 0.480252 GGAGAGGATTTGGGGATGGG 59.520 60.000 0.00 0.00 0.00 4.00
1342 1435 1.091537 GGAAATTCGATTGGTGCGGA 58.908 50.000 0.00 0.00 0.00 5.54
1343 1436 1.064060 GGAAATTCGATTGGTGCGGAG 59.936 52.381 0.00 0.00 0.00 4.63
1362 1455 1.202582 AGCCGGATCGTGCATAGTATC 59.797 52.381 5.05 0.00 0.00 2.24
1363 1456 1.736032 GCCGGATCGTGCATAGTATCC 60.736 57.143 5.05 0.00 35.54 2.59
1392 1491 6.228273 ACATTTGTTCAGATACAACTGTCG 57.772 37.500 11.95 0.00 43.89 4.35
1395 1494 6.912203 TTTGTTCAGATACAACTGTCGAAA 57.088 33.333 0.00 0.00 37.72 3.46
1397 1496 7.490962 TTGTTCAGATACAACTGTCGAAATT 57.509 32.000 0.00 0.00 38.79 1.82
1398 1497 8.596271 TTGTTCAGATACAACTGTCGAAATTA 57.404 30.769 0.00 0.00 38.79 1.40
1399 1498 8.239681 TGTTCAGATACAACTGTCGAAATTAG 57.760 34.615 0.00 0.00 38.79 1.73
1400 1499 6.887376 TCAGATACAACTGTCGAAATTAGC 57.113 37.500 0.00 0.00 38.79 3.09
1402 1501 6.531594 TCAGATACAACTGTCGAAATTAGCAG 59.468 38.462 0.00 0.00 38.79 4.24
1403 1502 3.813529 ACAACTGTCGAAATTAGCAGC 57.186 42.857 0.00 0.00 32.65 5.25
1405 1504 3.563808 ACAACTGTCGAAATTAGCAGCAA 59.436 39.130 0.00 0.00 32.65 3.91
1406 1505 4.153986 CAACTGTCGAAATTAGCAGCAAG 58.846 43.478 0.00 0.00 32.65 4.01
1407 1506 2.744202 ACTGTCGAAATTAGCAGCAAGG 59.256 45.455 0.00 0.00 32.65 3.61
1408 1507 1.468520 TGTCGAAATTAGCAGCAAGGC 59.531 47.619 0.00 0.00 0.00 4.35
1410 1509 2.162408 GTCGAAATTAGCAGCAAGGCTT 59.838 45.455 0.00 0.00 42.71 4.35
1411 1510 2.420022 TCGAAATTAGCAGCAAGGCTTC 59.580 45.455 0.00 0.00 42.71 3.86
1412 1511 2.789092 CGAAATTAGCAGCAAGGCTTCG 60.789 50.000 0.00 3.28 42.71 3.79
1413 1512 1.098050 AATTAGCAGCAAGGCTTCGG 58.902 50.000 0.00 0.00 42.71 4.30
1414 1513 0.035056 ATTAGCAGCAAGGCTTCGGT 60.035 50.000 0.00 0.00 42.71 4.69
1415 1514 0.250727 TTAGCAGCAAGGCTTCGGTT 60.251 50.000 0.00 0.00 42.71 4.44
1416 1515 0.611200 TAGCAGCAAGGCTTCGGTTA 59.389 50.000 0.00 0.00 42.71 2.85
1417 1516 0.674895 AGCAGCAAGGCTTCGGTTAG 60.675 55.000 0.00 0.00 42.71 2.34
1418 1517 0.955919 GCAGCAAGGCTTCGGTTAGT 60.956 55.000 0.00 0.00 36.40 2.24
1419 1518 1.523758 CAGCAAGGCTTCGGTTAGTT 58.476 50.000 0.00 0.00 36.40 2.24
1420 1519 2.695359 CAGCAAGGCTTCGGTTAGTTA 58.305 47.619 0.00 0.00 36.40 2.24
1421 1520 3.071479 CAGCAAGGCTTCGGTTAGTTAA 58.929 45.455 0.00 0.00 36.40 2.01
1422 1521 3.125316 CAGCAAGGCTTCGGTTAGTTAAG 59.875 47.826 0.00 0.00 36.40 1.85
1423 1522 2.159558 GCAAGGCTTCGGTTAGTTAAGC 60.160 50.000 0.00 0.00 43.85 3.09
1424 1523 3.335579 CAAGGCTTCGGTTAGTTAAGCT 58.664 45.455 0.00 0.00 44.00 3.74
1425 1524 2.973945 AGGCTTCGGTTAGTTAAGCTG 58.026 47.619 6.28 0.00 44.00 4.24
1430 1529 1.702491 CGGTTAGTTAAGCTGCGCCC 61.702 60.000 4.18 0.00 0.00 6.13
1440 1539 2.354539 CTGCGCCCGTTTTGGTTG 60.355 61.111 4.18 0.00 35.15 3.77
1486 1585 0.976641 TCGGGTGATAGATGATGGCC 59.023 55.000 0.00 0.00 0.00 5.36
1508 1607 4.217118 CCATTCCAGTTTCAGAGTTCTTGG 59.783 45.833 0.00 0.00 0.00 3.61
1514 1613 5.412904 CCAGTTTCAGAGTTCTTGGGTATTC 59.587 44.000 0.00 0.00 0.00 1.75
1546 1652 4.083802 CCAAGCAGCAGAAAGTGTTAGTAC 60.084 45.833 0.00 0.00 0.00 2.73
1555 1661 6.802834 GCAGAAAGTGTTAGTACTGTCTCTAC 59.197 42.308 5.39 0.00 42.10 2.59
1569 1675 0.390866 CTCTACTGCAGCTGGTGTGG 60.391 60.000 17.12 0.00 0.00 4.17
1608 1714 9.543783 ACTACGATTCTTAACCTTATTTGATCC 57.456 33.333 0.00 0.00 0.00 3.36
1634 1740 1.415659 AGCTAGCCTCAGCATCGATTT 59.584 47.619 12.13 0.00 44.35 2.17
1651 1757 4.094887 TCGATTTGCTACAGAAATCCTTGC 59.905 41.667 0.00 0.00 36.75 4.01
1824 1940 8.717821 TGAAAACTAGCGCAATATATGGATAAC 58.282 33.333 11.47 0.00 0.00 1.89
1906 2028 8.617809 GGTCTAATGAGTTAAAATCGCCAAATA 58.382 33.333 0.00 0.00 0.00 1.40
2184 2468 7.740805 AGAGTATTTCCATTATCTCCTGAACC 58.259 38.462 0.00 0.00 0.00 3.62
2210 2494 5.475719 TCTTCTTGGTACTCGGTACAAATG 58.524 41.667 13.76 5.88 40.41 2.32
2248 2532 8.522830 GTTTTAGATGGAAATGTTCTCATGGAA 58.477 33.333 0.00 0.00 34.19 3.53
2297 2581 2.131183 GACTCTGCGAGCCATGTTATC 58.869 52.381 5.63 0.00 32.04 1.75
2313 2597 5.303747 TGTTATCATTTTACGGGTTGCTG 57.696 39.130 0.00 0.00 0.00 4.41
2444 2728 0.736053 GTGTTGCAACCGTCCTTCAA 59.264 50.000 26.14 1.54 0.00 2.69
2476 2760 1.003355 CACCTGGATTCTGGCGTGT 60.003 57.895 0.00 0.00 35.65 4.49
2492 2776 2.561569 CGTGTTGGTCTGAACCTCTTT 58.438 47.619 0.00 0.00 46.60 2.52
2540 2824 0.239347 CTGCTGAAAAGGAACGCCTG 59.761 55.000 0.00 0.00 46.28 4.85
2711 2996 3.159213 TCCACAAGGCAACATTCTCAT 57.841 42.857 0.00 0.00 41.41 2.90
2779 3064 3.198409 TCTGGCAGCGATGTCAATAAT 57.802 42.857 10.09 0.00 0.00 1.28
2787 3072 6.293626 GGCAGCGATGTCAATAATAATTCAGT 60.294 38.462 0.00 0.00 0.00 3.41
2814 3099 9.841295 TTGTAATGTCCATAGTTTAATACTCCC 57.159 33.333 0.00 0.00 38.33 4.30
2815 3100 9.220906 TGTAATGTCCATAGTTTAATACTCCCT 57.779 33.333 0.00 0.00 38.33 4.20
2816 3101 9.708092 GTAATGTCCATAGTTTAATACTCCCTC 57.292 37.037 0.00 0.00 38.33 4.30
2817 3102 6.742559 TGTCCATAGTTTAATACTCCCTCC 57.257 41.667 0.00 0.00 38.33 4.30
2818 3103 5.303589 TGTCCATAGTTTAATACTCCCTCCG 59.696 44.000 0.00 0.00 38.33 4.63
2819 3104 4.836736 TCCATAGTTTAATACTCCCTCCGG 59.163 45.833 0.00 0.00 38.33 5.14
2820 3105 4.562963 CCATAGTTTAATACTCCCTCCGGC 60.563 50.000 0.00 0.00 38.33 6.13
2821 3106 1.767088 AGTTTAATACTCCCTCCGGCC 59.233 52.381 0.00 0.00 28.23 6.13
2822 3107 1.767088 GTTTAATACTCCCTCCGGCCT 59.233 52.381 0.00 0.00 0.00 5.19
2823 3108 1.713297 TTAATACTCCCTCCGGCCTC 58.287 55.000 0.00 0.00 0.00 4.70
2824 3109 0.178941 TAATACTCCCTCCGGCCTCC 60.179 60.000 0.00 0.00 0.00 4.30
2832 3117 4.146156 TCCGGCCTCCGTCCCATA 62.146 66.667 0.00 0.00 46.80 2.74
2833 3118 3.158648 CCGGCCTCCGTCCCATAA 61.159 66.667 0.00 0.00 46.80 1.90
2834 3119 2.516888 CCGGCCTCCGTCCCATAAT 61.517 63.158 0.00 0.00 46.80 1.28
2835 3120 1.189524 CCGGCCTCCGTCCCATAATA 61.190 60.000 0.00 0.00 46.80 0.98
2836 3121 0.902531 CGGCCTCCGTCCCATAATAT 59.097 55.000 0.00 0.00 42.73 1.28
2837 3122 2.104967 CGGCCTCCGTCCCATAATATA 58.895 52.381 0.00 0.00 42.73 0.86
2838 3123 2.498481 CGGCCTCCGTCCCATAATATAA 59.502 50.000 0.00 0.00 42.73 0.98
2839 3124 3.430374 CGGCCTCCGTCCCATAATATAAG 60.430 52.174 0.00 0.00 42.73 1.73
2840 3125 3.773119 GGCCTCCGTCCCATAATATAAGA 59.227 47.826 0.00 0.00 0.00 2.10
2841 3126 4.141914 GGCCTCCGTCCCATAATATAAGAG 60.142 50.000 0.00 0.00 0.00 2.85
2842 3127 4.680975 GCCTCCGTCCCATAATATAAGAGC 60.681 50.000 0.00 0.00 0.00 4.09
2843 3128 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2844 3129 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2845 3130 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2846 3131 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2847 3132 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2848 3133 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2849 3134 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
2850 3135 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
2851 3136 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
2852 3137 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
2853 3138 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
2854 3139 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
2857 3142 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
2858 3143 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
2859 3144 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
2860 3145 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
2861 3146 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
2862 3147 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
2890 3175 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2891 3176 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2892 3177 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2893 3178 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2894 3179 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2895 3180 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2896 3181 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2897 3182 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2938 3224 7.390440 TGCTATATCATGGCAACCTGTATAAAC 59.610 37.037 0.00 0.00 44.06 2.01
2940 3226 9.453572 CTATATCATGGCAACCTGTATAAACAT 57.546 33.333 0.00 0.00 34.37 2.71
2942 3228 7.750229 ATCATGGCAACCTGTATAAACATAG 57.250 36.000 0.00 0.00 34.37 2.23
2948 3234 6.346096 GCAACCTGTATAAACATAGGAGACA 58.654 40.000 0.00 0.00 34.37 3.41
2956 3242 3.737559 AACATAGGAGACATTTGGCCA 57.262 42.857 0.00 0.00 0.00 5.36
2989 3275 4.539509 TTGTGTGCTTACTTTGGTTACG 57.460 40.909 0.00 0.00 0.00 3.18
3318 3604 0.108756 GCAGGTAGGTTCACGAGGAC 60.109 60.000 0.00 0.00 0.00 3.85
3319 3605 0.531200 CAGGTAGGTTCACGAGGACC 59.469 60.000 1.35 1.35 0.00 4.46
3572 3859 5.124457 GGTGCTGAATTGCTAAAATCAGAGA 59.876 40.000 7.53 0.00 43.34 3.10
3582 3869 5.884232 TGCTAAAATCAGAGATCAGCAATGT 59.116 36.000 0.00 0.00 34.82 2.71
3665 4154 5.543507 TGTTGTTTGCTAAAATGGGATGT 57.456 34.783 0.00 0.00 0.00 3.06
3678 4167 2.445427 TGGGATGTGCCAGTACAATTG 58.555 47.619 3.24 3.24 38.95 2.32
3797 4286 9.868277 GAATCTTGAGTATGGATCTACTATTGG 57.132 37.037 0.00 0.00 32.11 3.16
3809 4298 4.816126 TCTACTATTGGCAGGGTATCACT 58.184 43.478 0.00 0.00 0.00 3.41
4059 4548 3.316253 GCTCTTGAAGCGACATTGATC 57.684 47.619 0.00 0.00 42.21 2.92
4061 4550 3.311871 GCTCTTGAAGCGACATTGATCAT 59.688 43.478 0.00 0.00 42.21 2.45
4062 4551 4.201891 GCTCTTGAAGCGACATTGATCATT 60.202 41.667 0.00 0.00 42.21 2.57
4206 4799 1.388837 GCGAGAGGAGGAGGAAGACC 61.389 65.000 0.00 0.00 0.00 3.85
4287 4880 4.536489 AGGGGAATTACTGTTTCTGCTAGT 59.464 41.667 0.00 0.00 0.00 2.57
4373 4969 1.142060 TGTTGTTCCCAGATTCACCGT 59.858 47.619 0.00 0.00 0.00 4.83
4426 5029 7.665559 AGCACAACAGGAAGTCATTAGAATTTA 59.334 33.333 0.00 0.00 31.24 1.40
4427 5030 7.750903 GCACAACAGGAAGTCATTAGAATTTAC 59.249 37.037 0.00 0.00 31.24 2.01
4428 5031 9.003658 CACAACAGGAAGTCATTAGAATTTACT 57.996 33.333 0.00 0.00 31.24 2.24
4429 5032 9.220767 ACAACAGGAAGTCATTAGAATTTACTC 57.779 33.333 0.00 0.00 31.24 2.59
4430 5033 8.669243 CAACAGGAAGTCATTAGAATTTACTCC 58.331 37.037 0.00 0.00 31.24 3.85
4468 5071 6.704289 AGTTCACATCACATATGAAATGGG 57.296 37.500 10.38 12.93 38.69 4.00
4472 5075 6.061441 TCACATCACATATGAAATGGGTACC 58.939 40.000 10.38 2.17 44.86 3.34
4497 5100 1.593196 GGAGCGGCAATGCATAACTA 58.407 50.000 7.79 0.00 37.31 2.24
4584 5315 3.308053 CACCGACAAGAATCATAGTGCTG 59.692 47.826 0.00 0.00 0.00 4.41
4608 5339 6.183360 TGCAGTGGTATTTTAGACGGATGATA 60.183 38.462 0.00 0.00 0.00 2.15
4696 7002 5.236282 CCCAGTTATCATCTCATGCTGTAG 58.764 45.833 0.00 0.00 0.00 2.74
4697 7003 5.221601 CCCAGTTATCATCTCATGCTGTAGT 60.222 44.000 0.00 0.00 0.00 2.73
4698 7004 6.015095 CCCAGTTATCATCTCATGCTGTAGTA 60.015 42.308 0.00 0.00 0.00 1.82
4699 7005 6.865726 CCAGTTATCATCTCATGCTGTAGTAC 59.134 42.308 0.00 0.00 0.00 2.73
4700 7006 7.255766 CCAGTTATCATCTCATGCTGTAGTACT 60.256 40.741 0.00 0.00 0.00 2.73
4701 7007 7.807433 CAGTTATCATCTCATGCTGTAGTACTC 59.193 40.741 0.00 0.00 0.00 2.59
4702 7008 5.720371 ATCATCTCATGCTGTAGTACTCC 57.280 43.478 0.00 0.00 0.00 3.85
4703 7009 3.891977 TCATCTCATGCTGTAGTACTCCC 59.108 47.826 0.00 0.00 0.00 4.30
4704 7010 3.671740 TCTCATGCTGTAGTACTCCCT 57.328 47.619 0.00 0.00 0.00 4.20
4705 7011 3.556999 TCTCATGCTGTAGTACTCCCTC 58.443 50.000 0.00 0.00 0.00 4.30
4706 7012 2.292016 CTCATGCTGTAGTACTCCCTCG 59.708 54.545 0.00 0.00 0.00 4.63
4707 7013 1.338337 CATGCTGTAGTACTCCCTCGG 59.662 57.143 0.00 0.00 0.00 4.63
4708 7014 0.330604 TGCTGTAGTACTCCCTCGGT 59.669 55.000 0.00 0.00 0.00 4.69
4709 7015 1.272313 TGCTGTAGTACTCCCTCGGTT 60.272 52.381 0.00 0.00 0.00 4.44
4710 7016 1.823610 GCTGTAGTACTCCCTCGGTTT 59.176 52.381 0.00 0.00 0.00 3.27
4711 7017 2.233186 GCTGTAGTACTCCCTCGGTTTT 59.767 50.000 0.00 0.00 0.00 2.43
4712 7018 3.306571 GCTGTAGTACTCCCTCGGTTTTT 60.307 47.826 0.00 0.00 0.00 1.94
4737 7043 9.902684 TTTTAATCCGTATATAAGGTTTGGTCA 57.097 29.630 16.73 0.00 0.00 4.02
4738 7044 9.902684 TTTAATCCGTATATAAGGTTTGGTCAA 57.097 29.630 16.73 5.01 0.00 3.18
4739 7045 9.902684 TTAATCCGTATATAAGGTTTGGTCAAA 57.097 29.630 16.73 4.74 0.00 2.69
4740 7046 8.810990 AATCCGTATATAAGGTTTGGTCAAAA 57.189 30.769 13.56 0.00 31.33 2.44
4741 7047 8.990163 ATCCGTATATAAGGTTTGGTCAAAAT 57.010 30.769 13.56 0.00 31.33 1.82
4742 7048 8.441312 TCCGTATATAAGGTTTGGTCAAAATC 57.559 34.615 13.56 0.00 31.33 2.17
4743 7049 8.047911 TCCGTATATAAGGTTTGGTCAAAATCA 58.952 33.333 13.56 0.00 30.61 2.57
4744 7050 8.679100 CCGTATATAAGGTTTGGTCAAAATCAA 58.321 33.333 6.55 0.00 30.61 2.57
4750 7056 6.983474 AGGTTTGGTCAAAATCAAACTTTG 57.017 33.333 12.51 0.00 46.86 2.77
4751 7057 5.353956 AGGTTTGGTCAAAATCAAACTTTGC 59.646 36.000 12.51 0.00 46.86 3.68
4752 7058 5.123027 GGTTTGGTCAAAATCAAACTTTGCA 59.877 36.000 12.51 0.00 46.86 4.08
4753 7059 6.348868 GGTTTGGTCAAAATCAAACTTTGCAA 60.349 34.615 12.51 0.00 46.86 4.08
4754 7060 6.808008 TTGGTCAAAATCAAACTTTGCAAA 57.192 29.167 12.14 12.14 34.43 3.68
4755 7061 6.419980 TGGTCAAAATCAAACTTTGCAAAG 57.580 33.333 32.53 32.53 41.73 2.77
4836 7142 9.669353 ATCAGATGCATAATGAAACGTATTTTC 57.331 29.630 15.80 0.00 43.63 2.29
4932 7238 9.720667 TTTGACTTTGATCAAATCTTATATGCG 57.279 29.630 20.76 8.05 42.32 4.73
4933 7239 8.661352 TGACTTTGATCAAATCTTATATGCGA 57.339 30.769 20.76 0.00 0.00 5.10
4934 7240 9.108284 TGACTTTGATCAAATCTTATATGCGAA 57.892 29.630 20.76 0.00 0.00 4.70
4935 7241 9.591404 GACTTTGATCAAATCTTATATGCGAAG 57.409 33.333 20.76 6.87 0.00 3.79
4936 7242 9.113838 ACTTTGATCAAATCTTATATGCGAAGT 57.886 29.630 20.76 7.49 0.00 3.01
5018 7324 1.375396 TGGTTCAGTGGATTCGCGG 60.375 57.895 6.13 0.00 0.00 6.46
5033 7339 2.988688 GCGGAAGGCGGATTTTGCA 61.989 57.895 0.00 0.00 0.00 4.08
5143 7449 4.320608 TTGTTCCCTGCTGTCATTTTTC 57.679 40.909 0.00 0.00 0.00 2.29
5144 7450 3.565307 TGTTCCCTGCTGTCATTTTTCT 58.435 40.909 0.00 0.00 0.00 2.52
5166 7472 7.000575 TCTTTTTGGCGAGATTAGTTTATCG 57.999 36.000 0.00 0.00 38.19 2.92
5278 8513 7.395489 ACAAGCATCAAATCTAAGGACATCTTT 59.605 33.333 0.00 0.00 36.93 2.52
5279 8514 7.565323 AGCATCAAATCTAAGGACATCTTTC 57.435 36.000 0.00 0.00 36.93 2.62
5326 8561 1.453762 CGTAGGACTCCGACATCCCC 61.454 65.000 8.84 0.00 35.38 4.81
5327 8562 1.152819 TAGGACTCCGACATCCCCG 60.153 63.158 0.00 0.00 35.38 5.73
5340 8575 1.874299 ATCCCCGGCCCACTCAAATT 61.874 55.000 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.380302 CCCAGCCTTGCAGGTTACT 59.620 57.895 0.00 0.00 37.80 2.24
2 3 2.035626 GCCCAGCCTTGCAGGTTA 59.964 61.111 0.00 0.00 37.80 2.85
9 10 2.743928 GAGTGACGCCCAGCCTTG 60.744 66.667 0.00 0.00 0.00 3.61
10 11 2.925170 AGAGTGACGCCCAGCCTT 60.925 61.111 0.00 0.00 0.00 4.35
11 12 3.699894 CAGAGTGACGCCCAGCCT 61.700 66.667 0.00 0.00 0.00 4.58
12 13 4.008933 ACAGAGTGACGCCCAGCC 62.009 66.667 0.00 0.00 0.00 4.85
13 14 2.740055 CACAGAGTGACGCCCAGC 60.740 66.667 0.00 0.00 35.23 4.85
14 15 2.740055 GCACAGAGTGACGCCCAG 60.740 66.667 0.58 0.00 35.23 4.45
15 16 2.395988 AATGCACAGAGTGACGCCCA 62.396 55.000 0.58 0.00 35.23 5.36
16 17 1.237285 AAATGCACAGAGTGACGCCC 61.237 55.000 0.58 0.00 35.23 6.13
17 18 0.110056 CAAATGCACAGAGTGACGCC 60.110 55.000 0.58 0.00 35.23 5.68
18 19 0.867746 TCAAATGCACAGAGTGACGC 59.132 50.000 0.58 0.00 35.23 5.19
19 20 3.607422 TTTCAAATGCACAGAGTGACG 57.393 42.857 0.58 0.00 35.23 4.35
69 70 5.717038 CCATAAATTTGGTTTGATTCGGC 57.283 39.130 0.00 0.00 31.74 5.54
119 135 9.757227 AACCAAAGTTCAAATCGATATGAAAAA 57.243 25.926 0.00 0.00 37.31 1.94
128 144 5.972382 CCGTAAAAACCAAAGTTCAAATCGA 59.028 36.000 0.00 0.00 34.19 3.59
319 335 5.662456 TGGTTATGTACGTGCTTAGCATTA 58.338 37.500 11.03 2.11 41.91 1.90
447 468 9.360093 TCAAAGTTAACGTGAATTTGAAAATGT 57.640 25.926 19.10 0.00 37.04 2.71
572 593 7.664082 TTATACGGTTTTTCGGTTTGTATGA 57.336 32.000 0.00 0.00 0.00 2.15
650 671 2.035783 GAGAGGTTGGGTTGGGCC 59.964 66.667 0.00 0.00 0.00 5.80
651 672 1.303643 CAGAGAGGTTGGGTTGGGC 60.304 63.158 0.00 0.00 0.00 5.36
652 673 1.303643 GCAGAGAGGTTGGGTTGGG 60.304 63.158 0.00 0.00 0.00 4.12
653 674 1.303643 GGCAGAGAGGTTGGGTTGG 60.304 63.158 0.00 0.00 0.00 3.77
654 675 1.303643 GGGCAGAGAGGTTGGGTTG 60.304 63.158 0.00 0.00 0.00 3.77
655 676 2.539081 GGGGCAGAGAGGTTGGGTT 61.539 63.158 0.00 0.00 0.00 4.11
656 677 2.936032 GGGGCAGAGAGGTTGGGT 60.936 66.667 0.00 0.00 0.00 4.51
657 678 4.101448 CGGGGCAGAGAGGTTGGG 62.101 72.222 0.00 0.00 0.00 4.12
658 679 3.316573 GACGGGGCAGAGAGGTTGG 62.317 68.421 0.00 0.00 0.00 3.77
659 680 2.266055 GACGGGGCAGAGAGGTTG 59.734 66.667 0.00 0.00 0.00 3.77
660 681 3.382832 CGACGGGGCAGAGAGGTT 61.383 66.667 0.00 0.00 0.00 3.50
674 695 2.726691 CGTGTGAATGGACGGCGAC 61.727 63.158 16.62 7.58 31.84 5.19
675 696 2.431771 CGTGTGAATGGACGGCGA 60.432 61.111 16.62 0.00 31.84 5.54
676 697 4.147322 GCGTGTGAATGGACGGCG 62.147 66.667 4.80 4.80 36.09 6.46
678 699 2.358125 TGGCGTGTGAATGGACGG 60.358 61.111 0.00 0.00 36.09 4.79
679 700 2.860293 GTGGCGTGTGAATGGACG 59.140 61.111 0.00 0.00 38.63 4.79
680 701 2.860293 CGTGGCGTGTGAATGGAC 59.140 61.111 0.00 0.00 0.00 4.02
681 702 3.047280 GCGTGGCGTGTGAATGGA 61.047 61.111 0.00 0.00 0.00 3.41
682 703 3.353029 TGCGTGGCGTGTGAATGG 61.353 61.111 0.00 0.00 0.00 3.16
683 704 2.127270 GTGCGTGGCGTGTGAATG 60.127 61.111 0.00 0.00 0.00 2.67
684 705 3.711842 CGTGCGTGGCGTGTGAAT 61.712 61.111 0.00 0.00 0.00 2.57
695 716 4.373116 AAGCATCGTCCCGTGCGT 62.373 61.111 0.00 0.00 45.69 5.24
696 717 3.554692 GAAGCATCGTCCCGTGCG 61.555 66.667 0.00 0.00 45.69 5.34
697 718 3.554692 CGAAGCATCGTCCCGTGC 61.555 66.667 2.58 0.00 44.06 5.34
723 744 7.873699 ATTATAGACATAAAGGTAGGTGCCT 57.126 36.000 0.00 0.00 41.41 4.75
724 745 9.601217 CATATTATAGACATAAAGGTAGGTGCC 57.399 37.037 0.00 0.00 30.50 5.01
736 757 9.996554 CTGTTGGGTTCACATATTATAGACATA 57.003 33.333 0.00 0.00 0.00 2.29
737 758 8.713971 TCTGTTGGGTTCACATATTATAGACAT 58.286 33.333 0.00 0.00 0.00 3.06
738 759 8.084985 TCTGTTGGGTTCACATATTATAGACA 57.915 34.615 0.00 0.00 0.00 3.41
741 762 9.155975 GCTATCTGTTGGGTTCACATATTATAG 57.844 37.037 0.00 0.00 0.00 1.31
742 763 8.880244 AGCTATCTGTTGGGTTCACATATTATA 58.120 33.333 0.00 0.00 0.00 0.98
743 764 7.663081 CAGCTATCTGTTGGGTTCACATATTAT 59.337 37.037 0.00 0.00 35.61 1.28
744 765 6.992123 CAGCTATCTGTTGGGTTCACATATTA 59.008 38.462 0.00 0.00 35.61 0.98
745 766 5.824624 CAGCTATCTGTTGGGTTCACATATT 59.175 40.000 0.00 0.00 35.61 1.28
746 767 5.371526 CAGCTATCTGTTGGGTTCACATAT 58.628 41.667 0.00 0.00 35.61 1.78
747 768 4.384098 CCAGCTATCTGTTGGGTTCACATA 60.384 45.833 0.00 0.00 42.46 2.29
748 769 3.614092 CAGCTATCTGTTGGGTTCACAT 58.386 45.455 0.00 0.00 35.61 3.21
749 770 2.290260 CCAGCTATCTGTTGGGTTCACA 60.290 50.000 0.00 0.00 42.46 3.58
750 771 2.359900 CCAGCTATCTGTTGGGTTCAC 58.640 52.381 0.00 0.00 42.46 3.18
751 772 1.340017 GCCAGCTATCTGTTGGGTTCA 60.340 52.381 0.00 0.00 45.70 3.18
752 773 1.383523 GCCAGCTATCTGTTGGGTTC 58.616 55.000 0.00 0.00 45.70 3.62
753 774 0.034089 GGCCAGCTATCTGTTGGGTT 60.034 55.000 0.00 0.00 45.70 4.11
754 775 1.609783 GGCCAGCTATCTGTTGGGT 59.390 57.895 0.00 0.00 45.70 4.51
755 776 1.152881 GGGCCAGCTATCTGTTGGG 60.153 63.158 4.39 0.00 45.70 4.12
757 778 0.035152 TGTGGGCCAGCTATCTGTTG 60.035 55.000 6.40 0.00 38.66 3.33
758 779 0.921896 ATGTGGGCCAGCTATCTGTT 59.078 50.000 6.40 0.00 38.66 3.16
759 780 0.182061 CATGTGGGCCAGCTATCTGT 59.818 55.000 6.40 0.00 38.66 3.41
760 781 0.182061 ACATGTGGGCCAGCTATCTG 59.818 55.000 6.40 0.67 40.02 2.90
761 782 0.471617 GACATGTGGGCCAGCTATCT 59.528 55.000 6.40 0.00 0.00 1.98
762 783 0.181114 TGACATGTGGGCCAGCTATC 59.819 55.000 6.40 3.38 0.00 2.08
763 784 0.182061 CTGACATGTGGGCCAGCTAT 59.818 55.000 6.40 0.00 0.00 2.97
764 785 1.603842 CTGACATGTGGGCCAGCTA 59.396 57.895 6.40 0.00 0.00 3.32
765 786 2.353958 CTGACATGTGGGCCAGCT 59.646 61.111 6.40 0.00 0.00 4.24
766 787 3.446570 GCTGACATGTGGGCCAGC 61.447 66.667 18.17 18.17 44.00 4.85
767 788 2.753043 GGCTGACATGTGGGCCAG 60.753 66.667 25.08 17.29 43.59 4.85
768 789 4.365111 GGGCTGACATGTGGGCCA 62.365 66.667 28.60 0.00 45.68 5.36
769 790 3.884704 TTGGGCTGACATGTGGGCC 62.885 63.158 24.82 24.82 44.50 5.80
770 791 1.470996 TTTTGGGCTGACATGTGGGC 61.471 55.000 1.15 8.29 0.00 5.36
771 792 1.047002 TTTTTGGGCTGACATGTGGG 58.953 50.000 1.15 0.00 0.00 4.61
772 793 1.411977 TGTTTTTGGGCTGACATGTGG 59.588 47.619 1.15 0.00 0.00 4.17
773 794 2.886862 TGTTTTTGGGCTGACATGTG 57.113 45.000 1.15 0.00 0.00 3.21
774 795 3.389925 CATGTTTTTGGGCTGACATGT 57.610 42.857 0.00 0.00 42.58 3.21
776 797 2.548493 GCACATGTTTTTGGGCTGACAT 60.548 45.455 0.00 0.00 42.88 3.06
777 798 1.202510 GCACATGTTTTTGGGCTGACA 60.203 47.619 0.00 0.00 42.88 3.58
778 799 1.501169 GCACATGTTTTTGGGCTGAC 58.499 50.000 0.00 0.00 42.88 3.51
779 800 0.392336 GGCACATGTTTTTGGGCTGA 59.608 50.000 0.00 0.00 45.55 4.26
780 801 0.393820 AGGCACATGTTTTTGGGCTG 59.606 50.000 8.20 0.00 45.55 4.85
781 802 1.130777 AAGGCACATGTTTTTGGGCT 58.869 45.000 0.00 0.00 45.55 5.19
782 803 1.603326 CAAAGGCACATGTTTTTGGGC 59.397 47.619 14.85 8.41 45.53 5.36
783 804 1.603326 GCAAAGGCACATGTTTTTGGG 59.397 47.619 20.29 2.74 40.72 4.12
796 817 2.256461 CAGCTTCGGTGCAAAGGC 59.744 61.111 0.00 0.00 41.68 4.35
797 818 1.283793 CACAGCTTCGGTGCAAAGG 59.716 57.895 0.00 0.00 34.04 3.11
798 819 0.040958 GACACAGCTTCGGTGCAAAG 60.041 55.000 2.73 0.00 39.87 2.77
799 820 1.444119 GGACACAGCTTCGGTGCAAA 61.444 55.000 2.73 0.00 39.87 3.68
800 821 1.891919 GGACACAGCTTCGGTGCAA 60.892 57.895 2.73 0.00 39.87 4.08
801 822 2.280797 GGACACAGCTTCGGTGCA 60.281 61.111 2.73 0.00 39.87 4.57
802 823 2.029844 GAGGACACAGCTTCGGTGC 61.030 63.158 2.73 0.00 39.87 5.01
803 824 1.374758 GGAGGACACAGCTTCGGTG 60.375 63.158 1.32 1.32 41.95 4.94
804 825 2.932234 CGGAGGACACAGCTTCGGT 61.932 63.158 0.00 0.00 0.00 4.69
805 826 2.125912 CGGAGGACACAGCTTCGG 60.126 66.667 0.00 0.00 0.00 4.30
806 827 2.811317 GCGGAGGACACAGCTTCG 60.811 66.667 0.00 0.00 0.00 3.79
807 828 2.343758 TGCGGAGGACACAGCTTC 59.656 61.111 0.00 0.00 32.66 3.86
922 967 1.607251 GGAGGTATAAATGCCGACGGG 60.607 57.143 17.22 0.00 37.65 5.28
947 992 1.129809 GTGTGTACGATGCGTGTGC 59.870 57.895 2.33 0.00 41.39 4.57
1000 1046 1.101331 GCTTTGCTTCCTGATCTGGG 58.899 55.000 17.73 8.65 0.00 4.45
1223 1281 3.432051 GATGGCGGAGGTGAGGTCG 62.432 68.421 0.00 0.00 0.00 4.79
1224 1282 2.501610 GATGGCGGAGGTGAGGTC 59.498 66.667 0.00 0.00 0.00 3.85
1229 1287 2.190578 GAAGGGATGGCGGAGGTG 59.809 66.667 0.00 0.00 0.00 4.00
1234 1292 1.467678 ATCTCTCGAAGGGATGGCGG 61.468 60.000 0.00 0.00 0.00 6.13
1236 1294 3.971245 ATAATCTCTCGAAGGGATGGC 57.029 47.619 0.00 0.00 0.00 4.40
1245 1303 6.446781 ACGACCAAACTAATAATCTCTCGA 57.553 37.500 0.00 0.00 0.00 4.04
1248 1306 8.414778 CCTTCTACGACCAAACTAATAATCTCT 58.585 37.037 0.00 0.00 0.00 3.10
1255 1348 5.021458 TCTCCCTTCTACGACCAAACTAAT 58.979 41.667 0.00 0.00 0.00 1.73
1260 1353 2.176889 CCTCTCCCTTCTACGACCAAA 58.823 52.381 0.00 0.00 0.00 3.28
1285 1378 2.141517 CTCCTAGATCCATGCAAAGCG 58.858 52.381 0.00 0.00 0.00 4.68
1289 1382 3.237746 CTCTCCTCCTAGATCCATGCAA 58.762 50.000 0.00 0.00 0.00 4.08
1290 1383 2.492381 CCTCTCCTCCTAGATCCATGCA 60.492 54.545 0.00 0.00 0.00 3.96
1292 1385 3.824001 TCCTCTCCTCCTAGATCCATG 57.176 52.381 0.00 0.00 0.00 3.66
1324 1417 1.531883 GCTCCGCACCAATCGAATTTC 60.532 52.381 0.00 0.00 0.00 2.17
1342 1435 1.202582 GATACTATGCACGATCCGGCT 59.797 52.381 0.00 0.00 0.00 5.52
1343 1436 1.630148 GATACTATGCACGATCCGGC 58.370 55.000 0.00 0.00 0.00 6.13
1378 1471 6.647212 TGCTAATTTCGACAGTTGTATCTG 57.353 37.500 0.00 0.00 40.80 2.90
1392 1491 2.478539 CCGAAGCCTTGCTGCTAATTTC 60.479 50.000 0.00 0.00 41.80 2.17
1395 1494 0.035056 ACCGAAGCCTTGCTGCTAAT 60.035 50.000 0.00 0.00 41.80 1.73
1397 1496 0.611200 TAACCGAAGCCTTGCTGCTA 59.389 50.000 0.00 0.00 41.80 3.49
1398 1497 0.674895 CTAACCGAAGCCTTGCTGCT 60.675 55.000 0.00 0.00 45.43 4.24
1399 1498 0.955919 ACTAACCGAAGCCTTGCTGC 60.956 55.000 0.00 0.00 39.62 5.25
1400 1499 1.523758 AACTAACCGAAGCCTTGCTG 58.476 50.000 0.00 0.00 39.62 4.41
1402 1501 2.159558 GCTTAACTAACCGAAGCCTTGC 60.160 50.000 0.00 0.00 39.75 4.01
1403 1502 3.125316 CAGCTTAACTAACCGAAGCCTTG 59.875 47.826 2.38 0.00 45.43 3.61
1405 1504 2.935676 GCAGCTTAACTAACCGAAGCCT 60.936 50.000 2.38 0.00 45.43 4.58
1406 1505 1.397343 GCAGCTTAACTAACCGAAGCC 59.603 52.381 2.38 0.00 45.43 4.35
1407 1506 1.060698 CGCAGCTTAACTAACCGAAGC 59.939 52.381 0.00 0.00 44.79 3.86
1423 1522 2.343163 TTCAACCAAAACGGGCGCAG 62.343 55.000 10.83 4.90 40.22 5.18
1424 1523 1.739338 ATTCAACCAAAACGGGCGCA 61.739 50.000 10.83 0.00 40.22 6.09
1425 1524 1.006688 ATTCAACCAAAACGGGCGC 60.007 52.632 0.00 0.00 40.22 6.53
1440 1539 2.095059 AGCGTTCATTGCTGGTTGATTC 60.095 45.455 0.00 0.00 42.14 2.52
1448 1547 0.520404 AAGCAGAGCGTTCATTGCTG 59.480 50.000 15.07 0.00 45.47 4.41
1486 1585 4.217118 CCCAAGAACTCTGAAACTGGAATG 59.783 45.833 0.00 0.00 0.00 2.67
1508 1607 4.036852 GCTGCTTGGGTAATTGAGAATACC 59.963 45.833 0.00 0.00 0.00 2.73
1514 1613 2.715046 TCTGCTGCTTGGGTAATTGAG 58.285 47.619 0.00 0.00 0.00 3.02
1546 1652 0.894141 ACCAGCTGCAGTAGAGACAG 59.106 55.000 16.64 0.00 34.48 3.51
1555 1661 0.321919 ACATACCACACCAGCTGCAG 60.322 55.000 10.11 10.11 0.00 4.41
1634 1740 3.682718 GCTAGGCAAGGATTTCTGTAGCA 60.683 47.826 0.00 0.00 0.00 3.49
1651 1757 4.277552 TCCACCTCGGATGCTAGG 57.722 61.111 2.99 2.99 39.64 3.02
1753 1869 3.196685 TGGTTGGTTCCTTTGTTTTGAGG 59.803 43.478 0.00 0.00 0.00 3.86
1926 2048 9.119418 CATGTACATATAACCCTGTTCATTTCA 57.881 33.333 8.32 0.00 32.99 2.69
2184 2468 3.376234 TGTACCGAGTACCAAGAAGATCG 59.624 47.826 10.45 0.00 38.14 3.69
2210 2494 3.375299 CCATCTAAAACAGTGCTAGGTGC 59.625 47.826 0.00 0.00 43.25 5.01
2222 2506 8.055279 TCCATGAGAACATTTCCATCTAAAAC 57.945 34.615 0.00 0.00 34.15 2.43
2248 2532 6.318900 GGCTGTATAGTAGGCAAAAAGAATGT 59.681 38.462 5.82 0.00 40.17 2.71
2253 2537 4.523083 TGGGCTGTATAGTAGGCAAAAAG 58.477 43.478 11.21 0.00 42.02 2.27
2297 2581 3.014369 CGCAGCAACCCGTAAAATG 57.986 52.632 0.00 0.00 0.00 2.32
2313 2597 0.168128 AAAACTGGATTGTAGCGCGC 59.832 50.000 26.66 26.66 0.00 6.86
2444 2728 6.784969 AGAATCCAGGTGCTGTATATCTAGTT 59.215 38.462 0.00 0.00 0.00 2.24
2540 2824 2.416747 GCCCTCAAAATGCAGGTTTTC 58.583 47.619 0.00 0.00 0.00 2.29
2711 2996 1.496444 TACCAGCAAGGGATGTGCCA 61.496 55.000 0.04 0.00 43.27 4.92
2818 3103 3.773119 TCTTATATTATGGGACGGAGGCC 59.227 47.826 0.00 0.00 0.00 5.19
2819 3104 4.680975 GCTCTTATATTATGGGACGGAGGC 60.681 50.000 0.00 0.00 0.00 4.70
2820 3105 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2821 3106 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2822 3107 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2823 3108 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2824 3109 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2825 3110 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
2826 3111 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
2827 3112 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
2828 3113 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
2831 3116 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
2832 3117 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
2833 3118 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
2834 3119 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
2835 3120 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
2836 3121 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
2837 3122 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
2838 3123 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
2839 3124 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
2866 3151 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2867 3152 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2868 3153 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2869 3154 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2870 3155 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2871 3156 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2872 3157 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2873 3158 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2874 3159 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2875 3160 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2876 3161 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2877 3162 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2878 3163 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2879 3164 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
2880 3165 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
2881 3166 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
2882 3167 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
2883 3168 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
2884 3169 0.106167 CATCTACTCCCTCCGTCCCA 60.106 60.000 0.00 0.00 0.00 4.37
2885 3170 0.828343 CCATCTACTCCCTCCGTCCC 60.828 65.000 0.00 0.00 0.00 4.46
2886 3171 0.106116 ACCATCTACTCCCTCCGTCC 60.106 60.000 0.00 0.00 0.00 4.79
2887 3172 2.653234 TACCATCTACTCCCTCCGTC 57.347 55.000 0.00 0.00 0.00 4.79
2888 3173 3.614568 AATACCATCTACTCCCTCCGT 57.385 47.619 0.00 0.00 0.00 4.69
2889 3174 3.439476 CGTAATACCATCTACTCCCTCCG 59.561 52.174 0.00 0.00 0.00 4.63
2890 3175 4.217983 CACGTAATACCATCTACTCCCTCC 59.782 50.000 0.00 0.00 0.00 4.30
2891 3176 4.321082 GCACGTAATACCATCTACTCCCTC 60.321 50.000 0.00 0.00 0.00 4.30
2892 3177 3.573110 GCACGTAATACCATCTACTCCCT 59.427 47.826 0.00 0.00 0.00 4.20
2893 3178 3.573110 AGCACGTAATACCATCTACTCCC 59.427 47.826 0.00 0.00 0.00 4.30
2894 3179 4.850347 AGCACGTAATACCATCTACTCC 57.150 45.455 0.00 0.00 0.00 3.85
2895 3180 8.890718 TGATATAGCACGTAATACCATCTACTC 58.109 37.037 0.00 0.00 0.00 2.59
2896 3181 8.803397 TGATATAGCACGTAATACCATCTACT 57.197 34.615 0.00 0.00 0.00 2.57
2897 3182 9.452065 CATGATATAGCACGTAATACCATCTAC 57.548 37.037 0.00 0.00 0.00 2.59
2938 3224 6.094603 GCTTATATGGCCAAATGTCTCCTATG 59.905 42.308 10.96 0.00 0.00 2.23
2940 3226 5.560724 GCTTATATGGCCAAATGTCTCCTA 58.439 41.667 10.96 0.00 0.00 2.94
2942 3228 4.773323 GCTTATATGGCCAAATGTCTCC 57.227 45.455 10.96 0.00 0.00 3.71
2956 3242 7.703058 AGTAAGCACACAAAAAGGCTTATAT 57.297 32.000 0.00 0.00 46.70 0.86
3572 3859 5.878116 CCAAATCCATCAAAACATTGCTGAT 59.122 36.000 0.00 0.00 0.00 2.90
3582 3869 4.834496 AGCAGAGTTCCAAATCCATCAAAA 59.166 37.500 0.00 0.00 0.00 2.44
3665 4154 4.039004 AGTTGCAAATCAATTGTACTGGCA 59.961 37.500 0.00 7.74 41.32 4.92
3678 4167 3.671702 GCAGCACTAGGAAGTTGCAAATC 60.672 47.826 0.00 2.46 38.70 2.17
3770 4259 9.566530 CAATAGTAGATCCATACTCAAGATTCG 57.433 37.037 0.00 0.00 37.24 3.34
3809 4298 4.715523 GGTACCTTGGGCTGCGCA 62.716 66.667 15.90 15.90 0.00 6.09
4059 4548 2.159476 AGCTGCGCTGAATTGTACAATG 60.159 45.455 21.46 10.53 37.57 2.82
4061 4550 1.522668 AGCTGCGCTGAATTGTACAA 58.477 45.000 19.32 11.41 37.57 2.41
4062 4551 2.378445 TAGCTGCGCTGAATTGTACA 57.622 45.000 19.32 0.00 40.10 2.90
4084 4573 0.109153 CGGGATGGCCATCAAGATCA 59.891 55.000 39.50 1.52 39.54 2.92
4206 4799 4.489771 ATTGGCCGCTCCCTTCCG 62.490 66.667 0.00 0.00 0.00 4.30
4287 4880 3.669536 TGGTCACATTACGATTTGCTCA 58.330 40.909 0.00 0.00 0.00 4.26
4373 4969 1.071699 GCTGGTGACAAACTAGGGACA 59.928 52.381 0.00 0.00 42.06 4.02
4426 5029 2.307098 ACTATGGCAAGCTTTCTGGAGT 59.693 45.455 0.00 0.00 0.00 3.85
4427 5030 2.996631 ACTATGGCAAGCTTTCTGGAG 58.003 47.619 0.00 0.00 0.00 3.86
4428 5031 3.244875 TGAACTATGGCAAGCTTTCTGGA 60.245 43.478 0.00 0.00 0.00 3.86
4429 5032 3.084039 TGAACTATGGCAAGCTTTCTGG 58.916 45.455 0.00 0.00 0.00 3.86
4430 5033 3.503363 TGTGAACTATGGCAAGCTTTCTG 59.497 43.478 0.00 0.00 0.00 3.02
4468 5071 4.484872 GCCGCTCCCCAAGGGTAC 62.485 72.222 4.11 0.00 44.74 3.34
4472 5075 3.142838 CATTGCCGCTCCCCAAGG 61.143 66.667 0.00 0.00 0.00 3.61
4497 5100 4.906618 AGGAAAGGTGAATTACATGACGT 58.093 39.130 0.00 0.00 0.00 4.34
4584 5315 4.439057 TCATCCGTCTAAAATACCACTGC 58.561 43.478 0.00 0.00 0.00 4.40
4644 6950 2.227626 CTCGATGATCTGGCACGAGTAT 59.772 50.000 13.00 1.71 43.19 2.12
4711 7017 9.902684 TGACCAAACCTTATATACGGATTAAAA 57.097 29.630 12.04 0.00 0.00 1.52
4712 7018 9.902684 TTGACCAAACCTTATATACGGATTAAA 57.097 29.630 12.04 0.00 0.00 1.52
4713 7019 9.902684 TTTGACCAAACCTTATATACGGATTAA 57.097 29.630 12.04 0.00 0.00 1.40
4714 7020 9.902684 TTTTGACCAAACCTTATATACGGATTA 57.097 29.630 12.04 0.00 0.00 1.75
4715 7021 8.810990 TTTTGACCAAACCTTATATACGGATT 57.189 30.769 12.04 3.78 0.00 3.01
4716 7022 8.990163 ATTTTGACCAAACCTTATATACGGAT 57.010 30.769 12.04 0.00 0.00 4.18
4717 7023 8.047911 TGATTTTGACCAAACCTTATATACGGA 58.952 33.333 12.04 0.00 0.00 4.69
4718 7024 8.215926 TGATTTTGACCAAACCTTATATACGG 57.784 34.615 3.75 3.75 0.00 4.02
4730 7036 6.808008 TTGCAAAGTTTGATTTTGACCAAA 57.192 29.167 19.82 0.00 37.65 3.28
4731 7037 6.429385 ACTTTGCAAAGTTTGATTTTGACCAA 59.571 30.769 33.85 8.13 46.52 3.67
4732 7038 5.936956 ACTTTGCAAAGTTTGATTTTGACCA 59.063 32.000 33.85 2.20 46.52 4.02
4733 7039 6.421377 ACTTTGCAAAGTTTGATTTTGACC 57.579 33.333 33.85 0.00 46.52 4.02
4810 7116 9.669353 GAAAATACGTTTCATTATGCATCTGAT 57.331 29.630 0.19 0.00 44.42 2.90
4907 7213 9.108284 TCGCATATAAGATTTGATCAAAGTCAA 57.892 29.630 24.17 11.64 36.38 3.18
4908 7214 8.661352 TCGCATATAAGATTTGATCAAAGTCA 57.339 30.769 24.17 11.02 33.32 3.41
4909 7215 9.591404 CTTCGCATATAAGATTTGATCAAAGTC 57.409 33.333 24.17 19.70 33.32 3.01
4910 7216 9.113838 ACTTCGCATATAAGATTTGATCAAAGT 57.886 29.630 24.17 14.86 33.32 2.66
4939 7245 8.538409 AAACATAACGTACTATCTCCGTTTTT 57.462 30.769 1.85 0.00 41.58 1.94
4940 7246 8.031277 AGAAACATAACGTACTATCTCCGTTTT 58.969 33.333 1.85 0.00 41.58 2.43
4941 7247 7.542025 AGAAACATAACGTACTATCTCCGTTT 58.458 34.615 1.85 0.00 41.58 3.60
4942 7248 7.093322 AGAAACATAACGTACTATCTCCGTT 57.907 36.000 0.00 0.00 45.65 4.44
4943 7249 6.690194 AGAAACATAACGTACTATCTCCGT 57.310 37.500 0.00 0.00 36.17 4.69
4944 7250 7.585573 GTGTAGAAACATAACGTACTATCTCCG 59.414 40.741 0.00 0.00 38.08 4.63
4945 7251 8.400947 TGTGTAGAAACATAACGTACTATCTCC 58.599 37.037 0.00 0.00 38.08 3.71
4946 7252 9.219497 GTGTGTAGAAACATAACGTACTATCTC 57.781 37.037 0.00 0.00 38.08 2.75
4947 7253 8.186821 GGTGTGTAGAAACATAACGTACTATCT 58.813 37.037 0.00 0.00 38.08 1.98
4948 7254 8.186821 AGGTGTGTAGAAACATAACGTACTATC 58.813 37.037 0.00 0.00 39.27 2.08
4949 7255 7.972277 CAGGTGTGTAGAAACATAACGTACTAT 59.028 37.037 0.00 0.00 39.27 2.12
4950 7256 7.040478 ACAGGTGTGTAGAAACATAACGTACTA 60.040 37.037 0.00 0.00 39.27 1.82
4951 7257 6.154445 CAGGTGTGTAGAAACATAACGTACT 58.846 40.000 0.00 0.00 39.27 2.73
4952 7258 5.922544 ACAGGTGTGTAGAAACATAACGTAC 59.077 40.000 0.00 0.00 39.27 3.67
5018 7324 0.733909 GCTGTGCAAAATCCGCCTTC 60.734 55.000 0.00 0.00 0.00 3.46
5143 7449 6.772078 ACGATAAACTAATCTCGCCAAAAAG 58.228 36.000 0.00 0.00 34.60 2.27
5144 7450 6.730960 ACGATAAACTAATCTCGCCAAAAA 57.269 33.333 0.00 0.00 34.60 1.94
5278 8513 3.296836 TTTCGAGGGTCGGCGTGA 61.297 61.111 6.85 0.00 40.88 4.35
5279 8514 3.110178 GTTTCGAGGGTCGGCGTG 61.110 66.667 6.85 0.00 40.88 5.34
5326 8561 0.811281 GGAAGAATTTGAGTGGGCCG 59.189 55.000 0.00 0.00 0.00 6.13
5327 8562 2.095461 GAGGAAGAATTTGAGTGGGCC 58.905 52.381 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.