Multiple sequence alignment - TraesCS5A01G215900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G215900 chr5A 100.000 2488 0 0 2342 4829 432035348 432032861 0.000000e+00 4595
1 TraesCS5A01G215900 chr5A 100.000 1967 0 0 1 1967 432037689 432035723 0.000000e+00 3633
2 TraesCS5A01G215900 chr5A 93.066 274 11 3 1 274 432046185 432045920 1.260000e-105 394
3 TraesCS5A01G215900 chr5B 87.324 2485 188 64 2345 4779 387175221 387172814 0.000000e+00 2726
4 TraesCS5A01G215900 chr5B 78.149 1286 126 80 423 1610 387177073 387175845 0.000000e+00 675
5 TraesCS5A01G215900 chr5B 80.896 424 35 16 1 400 387177548 387177147 4.730000e-75 292
6 TraesCS5A01G215900 chr5B 86.935 199 20 3 1768 1960 387175682 387175484 8.140000e-53 219
7 TraesCS5A01G215900 chr5B 88.889 117 13 0 1633 1749 387175785 387175669 1.400000e-30 145
8 TraesCS5A01G215900 chr5D 91.764 1202 74 16 2737 3924 331403974 331402784 0.000000e+00 1648
9 TraesCS5A01G215900 chr5D 84.834 844 61 34 657 1462 331406298 331405484 0.000000e+00 787
10 TraesCS5A01G215900 chr5D 88.355 541 35 14 3918 4444 331402754 331402228 4.100000e-175 625
11 TraesCS5A01G215900 chr5D 91.818 330 19 4 4453 4779 331402183 331401859 2.050000e-123 453
12 TraesCS5A01G215900 chr5D 81.900 442 37 18 8 429 331407053 331406635 2.790000e-87 333
13 TraesCS5A01G215900 chr5D 88.800 125 14 0 1625 1749 331405304 331405180 2.330000e-33 154
14 TraesCS5A01G215900 chr7B 79.641 167 34 0 3053 3219 577201815 577201981 2.360000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G215900 chr5A 432032861 432037689 4828 True 4114.000000 4595 100.000000 1 4829 2 chr5A.!!$R2 4828
1 TraesCS5A01G215900 chr5B 387172814 387177548 4734 True 811.400000 2726 84.438600 1 4779 5 chr5B.!!$R1 4778
2 TraesCS5A01G215900 chr5D 331401859 331407053 5194 True 666.666667 1648 87.911833 8 4779 6 chr5D.!!$R1 4771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
212 219 0.026027 GGAGCGACGACGTACTGTAG 59.974 60.0 9.33 0.00 41.98 2.74 F
290 301 0.305313 CTACGCTACAGAGACGCCTC 59.695 60.0 0.00 0.00 39.72 4.70 F
646 830 0.522915 GGTCGCGAGTACTACTGCAC 60.523 60.0 10.24 9.93 0.00 4.57 F
1491 1756 0.033228 GATGCGAGGGATGGAGTCAG 59.967 60.0 0.00 0.00 0.00 3.51 F
1493 1758 0.033503 TGCGAGGGATGGAGTCAGTA 60.034 55.0 0.00 0.00 0.00 2.74 F
1658 1964 0.338120 TGGGGGATTGATGGGTTTCC 59.662 55.0 0.00 0.00 0.00 3.13 F
1756 2062 0.403655 TTGGCCTTGTATGCTGTCCA 59.596 50.0 3.32 0.00 0.00 4.02 F
1757 2063 0.403655 TGGCCTTGTATGCTGTCCAA 59.596 50.0 3.32 0.00 0.00 3.53 F
2620 3160 0.958822 ACGAAACACAATTCTGGCCC 59.041 50.0 0.00 0.00 0.00 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1472 1737 0.033228 CTGACTCCATCCCTCGCATC 59.967 60.000 0.00 0.00 0.00 3.91 R
1474 1739 0.033503 TACTGACTCCATCCCTCGCA 60.034 55.000 0.00 0.00 0.00 5.10 R
2602 3142 0.243636 GGGGCCAGAATTGTGTTTCG 59.756 55.000 4.39 0.00 0.00 3.46 R
2996 3584 0.895100 TTTGGCAGCAGGTCCATCAC 60.895 55.000 0.00 0.00 31.54 3.06 R
3072 3660 1.205417 CGGATTTCAGCTGCCCATTTT 59.795 47.619 9.47 0.00 0.00 1.82 R
3567 4158 0.596859 GGTAAGCGGGCTCGACATAC 60.597 60.000 12.03 9.04 39.00 2.39 R
3610 4201 1.002468 CACGCCAAAGTTGTTCCTCAG 60.002 52.381 0.00 0.00 0.00 3.35 R
3777 4368 2.123077 AGGCTCCAGAGATCCCCG 60.123 66.667 0.00 0.00 0.00 5.73 R
3835 4426 0.176910 TCGCAGACCACACTGACAAA 59.823 50.000 0.00 0.00 39.94 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 56 5.681105 CGGAGATATTTTACAACAAATGCGG 59.319 40.000 0.00 0.00 0.00 5.69
59 65 3.836949 ACAACAAATGCGGATCATGAAC 58.163 40.909 0.00 0.00 35.13 3.18
129 136 4.894784 ACACTAAATATAGCCGACATGGG 58.105 43.478 0.00 0.00 38.63 4.00
149 156 1.370064 GTACAGTTGGACGCAGGGT 59.630 57.895 0.00 0.00 0.00 4.34
208 215 3.494336 CCGGAGCGACGACGTACT 61.494 66.667 9.33 0.75 41.98 2.73
209 216 2.276493 CGGAGCGACGACGTACTG 60.276 66.667 9.33 4.92 41.98 2.74
210 217 2.866028 GGAGCGACGACGTACTGT 59.134 61.111 9.33 0.00 41.98 3.55
211 218 1.686566 CGGAGCGACGACGTACTGTA 61.687 60.000 9.33 0.00 41.98 2.74
212 219 0.026027 GGAGCGACGACGTACTGTAG 59.974 60.000 9.33 0.00 41.98 2.74
213 220 0.718343 GAGCGACGACGTACTGTAGT 59.282 55.000 9.33 4.01 39.30 2.73
214 221 1.920574 GAGCGACGACGTACTGTAGTA 59.079 52.381 9.33 0.00 36.48 1.82
215 222 1.923204 AGCGACGACGTACTGTAGTAG 59.077 52.381 9.33 5.63 36.48 2.57
216 223 1.005557 GCGACGACGTACTGTAGTAGG 60.006 57.143 9.33 9.50 36.48 3.18
218 225 3.435566 CGACGACGTACTGTAGTAGGTA 58.564 50.000 15.05 0.00 45.94 3.08
247 254 2.909965 TGCCGCAAAACCACCCTC 60.910 61.111 0.00 0.00 0.00 4.30
250 257 2.613506 CCGCAAAACCACCCTCGAC 61.614 63.158 0.00 0.00 0.00 4.20
286 297 0.586748 CACGCTACGCTACAGAGACG 60.587 60.000 0.00 0.00 0.00 4.18
290 301 0.305313 CTACGCTACAGAGACGCCTC 59.695 60.000 0.00 0.00 39.72 4.70
322 340 2.188469 GCGTTTCCTATCGCCCCA 59.812 61.111 0.00 0.00 45.54 4.96
323 341 1.887707 GCGTTTCCTATCGCCCCAG 60.888 63.158 0.00 0.00 45.54 4.45
350 369 0.780002 TCGTAACGCGAGCACTTTTC 59.220 50.000 15.93 0.00 45.68 2.29
367 386 1.619654 TTCTCGTTTGTCCCCTCGTA 58.380 50.000 0.00 0.00 0.00 3.43
369 388 3.003394 TCTCGTTTGTCCCCTCGTATA 57.997 47.619 0.00 0.00 0.00 1.47
438 515 4.834453 CAGCAGCAGGAGCCTCGG 62.834 72.222 0.00 0.00 43.56 4.63
442 519 4.742649 AGCAGGAGCCTCGGTCGA 62.743 66.667 0.00 0.00 43.56 4.20
443 520 4.200283 GCAGGAGCCTCGGTCGAG 62.200 72.222 12.87 12.87 41.63 4.04
450 527 2.885113 CCTCGGTCGAGCACATGA 59.115 61.111 15.89 2.59 40.69 3.07
514 644 4.135153 CCAGCCGGACCTCACTCG 62.135 72.222 5.05 0.00 0.00 4.18
515 645 4.803426 CAGCCGGACCTCACTCGC 62.803 72.222 5.05 0.00 0.00 5.03
517 647 4.500116 GCCGGACCTCACTCGCTC 62.500 72.222 5.05 0.00 0.00 5.03
518 648 3.062466 CCGGACCTCACTCGCTCA 61.062 66.667 0.00 0.00 0.00 4.26
519 649 2.179517 CGGACCTCACTCGCTCAC 59.820 66.667 0.00 0.00 0.00 3.51
520 650 2.336478 CGGACCTCACTCGCTCACT 61.336 63.158 0.00 0.00 0.00 3.41
521 651 1.509004 GGACCTCACTCGCTCACTC 59.491 63.158 0.00 0.00 0.00 3.51
522 652 1.244697 GGACCTCACTCGCTCACTCA 61.245 60.000 0.00 0.00 0.00 3.41
523 653 0.814457 GACCTCACTCGCTCACTCAT 59.186 55.000 0.00 0.00 0.00 2.90
524 654 2.017782 GACCTCACTCGCTCACTCATA 58.982 52.381 0.00 0.00 0.00 2.15
525 655 1.746220 ACCTCACTCGCTCACTCATAC 59.254 52.381 0.00 0.00 0.00 2.39
536 666 3.731264 GCTCACTCATACTACGTGACACC 60.731 52.174 0.00 0.00 34.32 4.16
548 678 4.717313 GACACCAGCCCGTTCCCC 62.717 72.222 0.00 0.00 0.00 4.81
559 706 4.742274 GTTCCCCAAACGCAAACC 57.258 55.556 0.00 0.00 0.00 3.27
586 733 0.988678 ATCTTGTAGGGCTGGGTCCC 60.989 60.000 0.00 0.00 46.93 4.46
624 808 4.056125 CACTCGGAGGCACGCAGA 62.056 66.667 10.23 0.00 0.00 4.26
642 826 1.078848 ACCGGTCGCGAGTACTACT 60.079 57.895 10.24 0.00 0.00 2.57
643 827 1.351012 CCGGTCGCGAGTACTACTG 59.649 63.158 10.24 1.38 0.00 2.74
644 828 1.297451 CGGTCGCGAGTACTACTGC 60.297 63.158 10.24 0.00 0.00 4.40
645 829 1.798735 GGTCGCGAGTACTACTGCA 59.201 57.895 10.24 0.00 0.00 4.41
646 830 0.522915 GGTCGCGAGTACTACTGCAC 60.523 60.000 10.24 9.93 0.00 4.57
647 831 0.856490 GTCGCGAGTACTACTGCACG 60.856 60.000 10.24 5.29 0.00 5.34
648 832 2.215604 CGCGAGTACTACTGCACGC 61.216 63.158 12.81 12.81 42.07 5.34
649 833 1.154093 GCGAGTACTACTGCACGCA 60.154 57.895 16.68 0.00 44.29 5.24
650 834 0.525668 GCGAGTACTACTGCACGCAT 60.526 55.000 16.68 0.00 44.29 4.73
651 835 1.191944 CGAGTACTACTGCACGCATG 58.808 55.000 0.00 0.00 0.00 4.06
652 836 1.202143 CGAGTACTACTGCACGCATGA 60.202 52.381 0.00 0.00 0.00 3.07
653 837 2.731027 CGAGTACTACTGCACGCATGAA 60.731 50.000 0.00 0.00 0.00 2.57
654 838 3.448686 GAGTACTACTGCACGCATGAAT 58.551 45.455 0.00 0.00 0.00 2.57
655 839 3.190079 AGTACTACTGCACGCATGAATG 58.810 45.455 0.00 0.00 0.00 2.67
662 846 3.242969 ACTGCACGCATGAATGATGAATC 60.243 43.478 0.00 0.00 33.31 2.52
695 882 5.233902 CCACTAGTAGTAGTAGTACGTGCAG 59.766 48.000 15.79 10.33 37.40 4.41
696 883 5.233902 CACTAGTAGTAGTAGTACGTGCAGG 59.766 48.000 15.79 4.53 37.40 4.85
697 884 2.941720 AGTAGTAGTAGTACGTGCAGGC 59.058 50.000 6.38 0.00 33.97 4.85
698 885 1.830279 AGTAGTAGTACGTGCAGGCA 58.170 50.000 6.38 0.00 33.97 4.75
699 886 1.471684 AGTAGTAGTACGTGCAGGCAC 59.528 52.381 14.20 14.20 43.01 5.01
700 887 1.200716 GTAGTAGTACGTGCAGGCACA 59.799 52.381 22.69 2.86 46.47 4.57
701 888 0.895530 AGTAGTACGTGCAGGCACAT 59.104 50.000 22.69 11.63 46.47 3.21
717 904 2.332104 CACATTCACTCGGTCAGTCAG 58.668 52.381 0.00 0.00 30.26 3.51
718 905 1.964223 ACATTCACTCGGTCAGTCAGT 59.036 47.619 0.00 0.00 30.26 3.41
719 906 2.029828 ACATTCACTCGGTCAGTCAGTC 60.030 50.000 0.00 0.00 30.26 3.51
720 907 1.687563 TTCACTCGGTCAGTCAGTCA 58.312 50.000 0.00 0.00 30.26 3.41
721 908 0.952280 TCACTCGGTCAGTCAGTCAC 59.048 55.000 0.00 0.00 30.26 3.67
722 909 0.955178 CACTCGGTCAGTCAGTCACT 59.045 55.000 0.00 0.00 30.26 3.41
736 925 0.660300 GTCACTTTTGGCGCGAAAGG 60.660 55.000 27.59 25.25 38.70 3.11
751 940 1.204113 AAAGGGAGAGGCAGGGTGAG 61.204 60.000 0.00 0.00 0.00 3.51
752 941 3.086600 GGGAGAGGCAGGGTGAGG 61.087 72.222 0.00 0.00 0.00 3.86
753 942 2.039624 GGAGAGGCAGGGTGAGGA 59.960 66.667 0.00 0.00 0.00 3.71
774 963 5.010282 GGATGACCAACTGATTGTTTACCT 58.990 41.667 0.00 0.00 36.63 3.08
786 983 5.069781 TGATTGTTTACCTGGGGTGAAAAAG 59.930 40.000 0.00 0.00 33.05 2.27
787 984 4.252570 TGTTTACCTGGGGTGAAAAAGA 57.747 40.909 0.00 0.00 36.19 2.52
788 985 4.211920 TGTTTACCTGGGGTGAAAAAGAG 58.788 43.478 0.00 0.00 36.19 2.85
789 986 2.579410 TACCTGGGGTGAAAAAGAGC 57.421 50.000 0.00 0.00 36.19 4.09
807 1004 3.483869 AGGGATCCAGCCGCTTCC 61.484 66.667 15.23 1.41 0.00 3.46
865 1062 2.101917 TGTTATAAGTAGGGAGCACCGC 59.898 50.000 0.00 0.00 46.96 5.68
904 1117 4.548513 CCTCCTCTCCCTCCCCCG 62.549 77.778 0.00 0.00 0.00 5.73
929 1142 4.200283 CGCAGAGCTCCCGTCCTC 62.200 72.222 10.93 0.00 0.00 3.71
933 1149 2.835895 GAGCTCCCGTCCTCCCTC 60.836 72.222 0.87 0.00 0.00 4.30
1134 1392 3.494336 CTGCAGAAGAAGGCGGCG 61.494 66.667 8.42 0.51 0.00 6.46
1137 1395 2.815647 CAGAAGAAGGCGGCGGAC 60.816 66.667 9.78 0.00 0.00 4.79
1167 1425 4.430765 GAGGCCGACTTCCGCGAA 62.431 66.667 8.23 0.00 36.84 4.70
1317 1575 1.806542 CGAGGACCACATTCAACTTGG 59.193 52.381 0.00 0.00 36.39 3.61
1325 1583 3.152341 CACATTCAACTTGGCTTCCTCT 58.848 45.455 0.00 0.00 0.00 3.69
1328 1586 2.568623 TCAACTTGGCTTCCTCTTCC 57.431 50.000 0.00 0.00 0.00 3.46
1329 1587 1.073923 TCAACTTGGCTTCCTCTTCCC 59.926 52.381 0.00 0.00 0.00 3.97
1330 1588 1.074566 CAACTTGGCTTCCTCTTCCCT 59.925 52.381 0.00 0.00 0.00 4.20
1335 1593 2.915869 TGGCTTCCTCTTCCCTTCTTA 58.084 47.619 0.00 0.00 0.00 2.10
1337 1595 3.852578 TGGCTTCCTCTTCCCTTCTTATT 59.147 43.478 0.00 0.00 0.00 1.40
1338 1596 4.292306 TGGCTTCCTCTTCCCTTCTTATTT 59.708 41.667 0.00 0.00 0.00 1.40
1340 1598 5.358442 GGCTTCCTCTTCCCTTCTTATTTTC 59.642 44.000 0.00 0.00 0.00 2.29
1341 1599 5.358442 GCTTCCTCTTCCCTTCTTATTTTCC 59.642 44.000 0.00 0.00 0.00 3.13
1357 1615 9.982651 TCTTATTTTCCATTTATCTACGAGAGG 57.017 33.333 0.00 0.00 0.00 3.69
1361 1619 3.964688 TCCATTTATCTACGAGAGGGCAA 59.035 43.478 0.00 0.00 0.00 4.52
1362 1620 4.407621 TCCATTTATCTACGAGAGGGCAAA 59.592 41.667 0.00 0.00 0.00 3.68
1363 1621 5.104693 TCCATTTATCTACGAGAGGGCAAAA 60.105 40.000 0.00 0.00 0.00 2.44
1364 1622 5.237344 CCATTTATCTACGAGAGGGCAAAAG 59.763 44.000 0.00 0.00 0.00 2.27
1428 1687 3.731216 CGATGTTCTACAAGTATCTGCCG 59.269 47.826 0.00 0.00 0.00 5.69
1432 1691 3.795623 TCTACAAGTATCTGCCGAACC 57.204 47.619 0.00 0.00 0.00 3.62
1472 1737 5.221126 GCAAGGCCTGGTAGATTTAATCTTG 60.221 44.000 13.00 3.32 40.76 3.02
1473 1738 5.975988 AGGCCTGGTAGATTTAATCTTGA 57.024 39.130 13.00 0.00 40.76 3.02
1474 1739 6.521527 AGGCCTGGTAGATTTAATCTTGAT 57.478 37.500 13.00 0.00 40.76 2.57
1475 1740 6.302269 AGGCCTGGTAGATTTAATCTTGATG 58.698 40.000 13.00 2.51 40.76 3.07
1476 1741 5.048434 GGCCTGGTAGATTTAATCTTGATGC 60.048 44.000 13.00 9.48 40.76 3.91
1477 1742 5.334414 GCCTGGTAGATTTAATCTTGATGCG 60.334 44.000 13.00 0.00 40.76 4.73
1478 1743 5.991606 CCTGGTAGATTTAATCTTGATGCGA 59.008 40.000 13.00 0.00 40.76 5.10
1479 1744 6.146837 CCTGGTAGATTTAATCTTGATGCGAG 59.853 42.308 13.00 5.77 40.76 5.03
1482 1747 5.296151 AGATTTAATCTTGATGCGAGGGA 57.704 39.130 0.99 0.00 35.76 4.20
1483 1748 5.874093 AGATTTAATCTTGATGCGAGGGAT 58.126 37.500 0.99 0.00 35.76 3.85
1484 1749 5.704515 AGATTTAATCTTGATGCGAGGGATG 59.295 40.000 0.99 0.00 35.76 3.51
1485 1750 2.267174 AATCTTGATGCGAGGGATGG 57.733 50.000 0.00 0.00 0.00 3.51
1486 1751 1.427809 ATCTTGATGCGAGGGATGGA 58.572 50.000 0.00 0.00 0.00 3.41
1487 1752 0.755079 TCTTGATGCGAGGGATGGAG 59.245 55.000 0.00 0.00 0.00 3.86
1488 1753 0.467384 CTTGATGCGAGGGATGGAGT 59.533 55.000 0.00 0.00 0.00 3.85
1489 1754 0.465705 TTGATGCGAGGGATGGAGTC 59.534 55.000 0.00 0.00 0.00 3.36
1490 1755 0.687427 TGATGCGAGGGATGGAGTCA 60.687 55.000 0.00 0.00 0.00 3.41
1491 1756 0.033228 GATGCGAGGGATGGAGTCAG 59.967 60.000 0.00 0.00 0.00 3.51
1492 1757 0.689080 ATGCGAGGGATGGAGTCAGT 60.689 55.000 0.00 0.00 0.00 3.41
1493 1758 0.033503 TGCGAGGGATGGAGTCAGTA 60.034 55.000 0.00 0.00 0.00 2.74
1494 1759 0.386113 GCGAGGGATGGAGTCAGTAC 59.614 60.000 0.00 0.00 0.00 2.73
1495 1760 2.024825 GCGAGGGATGGAGTCAGTACT 61.025 57.143 0.00 0.00 39.21 2.73
1496 1761 2.379972 CGAGGGATGGAGTCAGTACTT 58.620 52.381 0.00 0.00 35.56 2.24
1497 1762 2.099921 CGAGGGATGGAGTCAGTACTTG 59.900 54.545 0.00 0.00 35.56 3.16
1498 1763 2.432510 GAGGGATGGAGTCAGTACTTGG 59.567 54.545 0.00 0.00 35.56 3.61
1499 1764 2.188817 GGGATGGAGTCAGTACTTGGT 58.811 52.381 0.00 0.00 35.56 3.67
1500 1765 3.012502 AGGGATGGAGTCAGTACTTGGTA 59.987 47.826 0.00 0.00 35.56 3.25
1501 1766 3.132467 GGGATGGAGTCAGTACTTGGTAC 59.868 52.174 0.00 0.12 39.10 3.34
1520 1789 5.996513 TGGTACTGTAAATTCCGCTTGTTTA 59.003 36.000 0.00 0.00 0.00 2.01
1521 1790 6.073112 TGGTACTGTAAATTCCGCTTGTTTAC 60.073 38.462 0.00 0.00 38.28 2.01
1532 1801 2.556622 CGCTTGTTTACCCAAATCTGGT 59.443 45.455 0.00 0.00 41.72 4.00
1533 1802 3.365969 CGCTTGTTTACCCAAATCTGGTC 60.366 47.826 0.00 0.00 41.72 4.02
1539 1808 5.245075 TGTTTACCCAAATCTGGTCAATTCC 59.755 40.000 0.00 0.00 41.72 3.01
1556 1825 4.917906 ATTCCAGGGCATAAGATCCTAC 57.082 45.455 0.00 0.00 0.00 3.18
1558 1827 2.182312 TCCAGGGCATAAGATCCTACCT 59.818 50.000 0.00 0.00 0.00 3.08
1563 1832 3.055747 GGGCATAAGATCCTACCTAGTGC 60.056 52.174 0.00 0.00 0.00 4.40
1576 1845 2.093128 ACCTAGTGCGGATTTTGGTAGG 60.093 50.000 0.00 0.00 33.20 3.18
1580 1849 1.135402 GTGCGGATTTTGGTAGGCAAG 60.135 52.381 0.00 0.00 31.53 4.01
1595 1864 2.106477 GCAAGCTCTGCCTTAAGAGT 57.894 50.000 3.36 0.00 46.13 3.24
1600 1869 1.066573 GCTCTGCCTTAAGAGTCTGCA 60.067 52.381 3.36 3.60 44.71 4.41
1612 1881 9.565213 CCTTAAGAGTCTGCAATTTATTTTCAG 57.435 33.333 3.36 0.00 0.00 3.02
1614 1883 5.958955 AGAGTCTGCAATTTATTTTCAGCC 58.041 37.500 0.00 0.00 0.00 4.85
1615 1884 5.713861 AGAGTCTGCAATTTATTTTCAGCCT 59.286 36.000 0.00 0.00 0.00 4.58
1617 1886 7.394359 AGAGTCTGCAATTTATTTTCAGCCTTA 59.606 33.333 0.00 0.00 0.00 2.69
1621 1890 9.369904 TCTGCAATTTATTTTCAGCCTTAAATC 57.630 29.630 0.00 0.00 0.00 2.17
1622 1891 9.153721 CTGCAATTTATTTTCAGCCTTAAATCA 57.846 29.630 0.00 0.00 0.00 2.57
1623 1892 9.499479 TGCAATTTATTTTCAGCCTTAAATCAA 57.501 25.926 0.00 0.00 0.00 2.57
1648 1954 6.509523 TTAGAATAGTAAGGTGGGGGATTG 57.490 41.667 0.00 0.00 0.00 2.67
1652 1958 1.852965 AGTAAGGTGGGGGATTGATGG 59.147 52.381 0.00 0.00 0.00 3.51
1654 1960 0.855400 AAGGTGGGGGATTGATGGGT 60.855 55.000 0.00 0.00 0.00 4.51
1658 1964 0.338120 TGGGGGATTGATGGGTTTCC 59.662 55.000 0.00 0.00 0.00 3.13
1671 1977 2.107552 TGGGTTTCCAAGGTAGTTGAGG 59.892 50.000 0.00 0.00 40.73 3.86
1673 1979 3.409570 GGTTTCCAAGGTAGTTGAGGTC 58.590 50.000 0.00 0.00 38.60 3.85
1675 1981 4.316645 GTTTCCAAGGTAGTTGAGGTCTC 58.683 47.826 0.00 0.00 38.60 3.36
1734 2040 3.150767 TCATGGGGTTTGGTTTCGTAAG 58.849 45.455 0.00 0.00 0.00 2.34
1738 2044 2.363038 GGGGTTTGGTTTCGTAAGCTTT 59.637 45.455 3.20 0.00 32.98 3.51
1739 2045 3.377439 GGGTTTGGTTTCGTAAGCTTTG 58.623 45.455 3.20 0.00 32.98 2.77
1749 2055 3.006940 TCGTAAGCTTTGGCCTTGTATG 58.993 45.455 3.20 0.00 39.73 2.39
1750 2056 2.477863 CGTAAGCTTTGGCCTTGTATGC 60.478 50.000 3.20 0.00 39.73 3.14
1753 2059 0.890683 GCTTTGGCCTTGTATGCTGT 59.109 50.000 3.32 0.00 0.00 4.40
1754 2060 1.135286 GCTTTGGCCTTGTATGCTGTC 60.135 52.381 3.32 0.00 0.00 3.51
1755 2061 1.474077 CTTTGGCCTTGTATGCTGTCC 59.526 52.381 3.32 0.00 0.00 4.02
1756 2062 0.403655 TTGGCCTTGTATGCTGTCCA 59.596 50.000 3.32 0.00 0.00 4.02
1757 2063 0.403655 TGGCCTTGTATGCTGTCCAA 59.596 50.000 3.32 0.00 0.00 3.53
1759 2065 1.892474 GGCCTTGTATGCTGTCCAAAA 59.108 47.619 0.00 0.00 0.00 2.44
1760 2066 2.298729 GGCCTTGTATGCTGTCCAAAAA 59.701 45.455 0.00 0.00 0.00 1.94
1784 2090 5.622770 AAAAACTTCGGCCTTGTACTATG 57.377 39.130 0.00 0.00 0.00 2.23
1785 2091 4.546829 AAACTTCGGCCTTGTACTATGA 57.453 40.909 0.00 0.00 0.00 2.15
1786 2092 4.755266 AACTTCGGCCTTGTACTATGAT 57.245 40.909 0.00 0.00 0.00 2.45
1787 2093 4.755266 ACTTCGGCCTTGTACTATGATT 57.245 40.909 0.00 0.00 0.00 2.57
1788 2094 4.442706 ACTTCGGCCTTGTACTATGATTG 58.557 43.478 0.00 0.00 0.00 2.67
1818 2124 5.390087 AACCTATCTCTAGTGGTGCTCTA 57.610 43.478 0.00 0.00 32.53 2.43
2390 2890 7.516198 AGTTATCATATTGCTGGATGAAACC 57.484 36.000 0.22 0.00 35.76 3.27
2396 2896 6.608405 TCATATTGCTGGATGAAACCTCAAAT 59.392 34.615 0.00 0.00 34.49 2.32
2405 2905 7.289310 TGGATGAAACCTCAAATATGATAGCA 58.711 34.615 0.00 0.00 34.49 3.49
2406 2906 7.446319 TGGATGAAACCTCAAATATGATAGCAG 59.554 37.037 0.00 0.00 34.49 4.24
2449 2949 9.976511 TTACTATCTTTTGATAACCATAGTCCG 57.023 33.333 0.00 0.00 40.53 4.79
2454 2954 7.713750 TCTTTTGATAACCATAGTCCGTAGAG 58.286 38.462 0.00 0.00 0.00 2.43
2461 2961 2.223829 CCATAGTCCGTAGAGCAACCAG 60.224 54.545 0.00 0.00 0.00 4.00
2500 3000 6.108687 TCAATGATGTTGTTCCTAGTAGCAG 58.891 40.000 0.00 0.00 0.00 4.24
2506 3006 4.065789 GTTGTTCCTAGTAGCAGCTTGTT 58.934 43.478 0.00 0.00 0.00 2.83
2508 3008 5.477607 TGTTCCTAGTAGCAGCTTGTTTA 57.522 39.130 0.00 0.00 0.00 2.01
2510 3010 7.177832 TGTTCCTAGTAGCAGCTTGTTTATA 57.822 36.000 0.00 0.00 0.00 0.98
2511 3011 7.039882 TGTTCCTAGTAGCAGCTTGTTTATAC 58.960 38.462 0.00 0.00 0.00 1.47
2512 3012 6.785337 TCCTAGTAGCAGCTTGTTTATACA 57.215 37.500 0.00 0.00 0.00 2.29
2513 3013 6.806751 TCCTAGTAGCAGCTTGTTTATACAG 58.193 40.000 0.00 0.00 35.28 2.74
2514 3014 6.380274 TCCTAGTAGCAGCTTGTTTATACAGT 59.620 38.462 0.00 0.00 35.28 3.55
2515 3015 7.558807 TCCTAGTAGCAGCTTGTTTATACAGTA 59.441 37.037 0.00 0.00 35.28 2.74
2517 3017 9.186323 CTAGTAGCAGCTTGTTTATACAGTATG 57.814 37.037 0.00 0.00 46.00 2.39
2591 3131 7.817418 AAGAGAGACAGTATTCTCATACTCC 57.183 40.000 14.15 0.00 43.37 3.85
2592 3132 6.303839 AGAGAGACAGTATTCTCATACTCCC 58.696 44.000 14.15 0.00 43.37 4.30
2595 3135 6.719370 AGAGACAGTATTCTCATACTCCCATC 59.281 42.308 3.12 0.00 43.37 3.51
2602 3142 5.860941 TTCTCATACTCCCATCTCAGAAC 57.139 43.478 0.00 0.00 0.00 3.01
2618 3158 3.003275 TCAGAACGAAACACAATTCTGGC 59.997 43.478 11.72 0.00 45.30 4.85
2620 3160 0.958822 ACGAAACACAATTCTGGCCC 59.041 50.000 0.00 0.00 0.00 5.80
2623 3163 1.901833 GAAACACAATTCTGGCCCCAT 59.098 47.619 0.00 0.00 0.00 4.00
2624 3164 2.028561 AACACAATTCTGGCCCCATT 57.971 45.000 0.00 0.00 0.00 3.16
2651 3191 7.718272 TTTCATTACCGGTTAATATTCTCCG 57.282 36.000 15.04 18.40 42.22 4.63
2672 3213 9.542462 TCTCCGATTTAACTTTCCATATAACTG 57.458 33.333 0.00 0.00 0.00 3.16
2701 3242 6.194967 TCCTAGAGATGTATTGTGGAACTGA 58.805 40.000 0.00 0.00 38.04 3.41
2705 3246 9.388506 CTAGAGATGTATTGTGGAACTGAAAAT 57.611 33.333 0.00 0.00 38.04 1.82
2770 3354 5.745227 TGGGACATAGGAAGAATTTCAGAC 58.255 41.667 0.00 0.00 34.90 3.51
2796 3380 7.762615 CCAAACATATGAATTTGTCTCTTGCAT 59.237 33.333 10.38 0.00 34.60 3.96
2798 3382 9.793252 AAACATATGAATTTGTCTCTTGCATAC 57.207 29.630 10.38 0.00 0.00 2.39
2814 3398 6.538742 TCTTGCATACCTAGAGTAAACAATGC 59.461 38.462 0.00 0.00 34.12 3.56
2822 3406 7.221450 ACCTAGAGTAAACAATGCACTGTTAA 58.779 34.615 14.72 0.00 38.59 2.01
2849 3433 8.877864 ATGGGTGATCACTTGTTAGAAATAAA 57.122 30.769 24.50 0.00 0.00 1.40
2873 3457 8.644318 AACAGATATCAGTGTACCGTAAAATC 57.356 34.615 5.32 0.00 0.00 2.17
2877 3461 8.569641 AGATATCAGTGTACCGTAAAATCTCTC 58.430 37.037 5.32 0.00 0.00 3.20
2878 3462 4.978186 TCAGTGTACCGTAAAATCTCTCG 58.022 43.478 0.00 0.00 0.00 4.04
2885 3471 5.340439 ACCGTAAAATCTCTCGAGGATTT 57.660 39.130 24.38 24.38 42.82 2.17
2887 3473 5.581085 ACCGTAAAATCTCTCGAGGATTTTG 59.419 40.000 35.01 27.89 46.33 2.44
2891 3477 8.653338 CGTAAAATCTCTCGAGGATTTTGTTTA 58.347 33.333 35.01 24.62 46.33 2.01
2894 3480 5.407407 TCTCTCGAGGATTTTGTTTAGCT 57.593 39.130 13.56 0.00 0.00 3.32
2900 3486 6.100004 TCGAGGATTTTGTTTAGCTAGTCAG 58.900 40.000 0.00 0.00 0.00 3.51
2910 3496 6.697395 TGTTTAGCTAGTCAGTTGCTAATGA 58.303 36.000 8.91 0.00 45.05 2.57
2920 3506 6.072838 AGTCAGTTGCTAATGAGATTGTTGTG 60.073 38.462 0.00 0.00 0.00 3.33
2937 3523 2.513753 TGTGCCACCAGTTTCCTATTG 58.486 47.619 0.00 0.00 0.00 1.90
2938 3524 1.818674 GTGCCACCAGTTTCCTATTGG 59.181 52.381 0.00 0.00 37.98 3.16
2941 3527 2.369394 CCACCAGTTTCCTATTGGAGC 58.631 52.381 0.00 0.00 44.24 4.70
2996 3584 6.831769 ACTTTATTGTAGATGCTGTTCAACG 58.168 36.000 0.00 0.00 0.00 4.10
3340 3928 3.118847 TGTGAGCAGAGGAGACAATGATC 60.119 47.826 0.00 0.00 35.01 2.92
3345 3933 4.019501 AGCAGAGGAGACAATGATCTGTTT 60.020 41.667 0.00 0.00 39.63 2.83
3422 4010 1.430992 TCCCTTCTTCCGGTGAAACT 58.569 50.000 0.00 0.00 36.74 2.66
3423 4011 1.071699 TCCCTTCTTCCGGTGAAACTG 59.928 52.381 0.00 0.00 44.86 3.16
3465 4053 2.224233 CGGGATGAACATGCTCTCTGAT 60.224 50.000 6.30 0.00 0.00 2.90
3480 4068 1.135170 TCTGATCAGAGCAGCAACTCG 60.135 52.381 21.67 0.00 41.77 4.18
3763 4354 1.371337 GCTGAATGGTGCGATGCAGA 61.371 55.000 6.39 0.00 40.08 4.26
3777 4368 3.741476 CAGAACGGGGCAAGCAGC 61.741 66.667 0.00 0.00 44.65 5.25
3798 4389 1.460273 GGGATCTCTGGAGCCTCGAC 61.460 65.000 0.41 0.00 46.39 4.20
3816 4407 2.899339 GAGCTCTTCATGGCGGCC 60.899 66.667 13.32 13.32 0.00 6.13
3835 4426 0.974383 CGGTGGTTACTGAGGGTTCT 59.026 55.000 0.00 0.00 35.05 3.01
3854 4445 0.176910 TTTGTCAGTGTGGTCTGCGA 59.823 50.000 0.00 0.00 35.63 5.10
3876 4467 4.818534 ATAGCACAAATGTAAGCCATCG 57.181 40.909 0.00 0.00 31.75 3.84
3879 4470 3.065786 AGCACAAATGTAAGCCATCGATG 59.934 43.478 18.76 18.76 31.75 3.84
3906 4499 2.151202 GGTTTCGTTCTCTTCCATGCA 58.849 47.619 0.00 0.00 0.00 3.96
3914 4507 4.083110 CGTTCTCTTCCATGCATTTCTTGT 60.083 41.667 0.00 0.00 0.00 3.16
4028 4658 0.322366 TGCATGTGGCCGAGATGAAA 60.322 50.000 13.94 1.97 43.89 2.69
4032 4662 0.036388 TGTGGCCGAGATGAAAGGAC 60.036 55.000 0.00 0.00 0.00 3.85
4066 4696 2.225068 ATGTTTCGTAGCCGGATCAG 57.775 50.000 5.05 0.00 33.95 2.90
4079 4709 1.821753 CGGATCAGACCCTAGCTATGG 59.178 57.143 13.07 13.07 0.00 2.74
4082 4712 4.417437 GGATCAGACCCTAGCTATGGTAA 58.583 47.826 19.40 9.61 34.20 2.85
4089 4719 5.965091 AGACCCTAGCTATGGTAAAAGACTT 59.035 40.000 19.40 0.00 34.20 3.01
4090 4720 6.098552 AGACCCTAGCTATGGTAAAAGACTTC 59.901 42.308 19.40 5.38 34.20 3.01
4098 4728 2.819608 TGGTAAAAGACTTCATGCTGCC 59.180 45.455 0.00 0.00 0.00 4.85
4170 4800 3.562973 GTCTCTATGATTGGGTGCATGTG 59.437 47.826 0.00 0.00 0.00 3.21
4287 4932 7.539712 TGTTAGTATATTTGCTGAGTGCTTC 57.460 36.000 0.00 0.00 43.37 3.86
4300 4945 1.054876 GTGCTTCGCTTTCGCTTTCG 61.055 55.000 0.00 0.00 35.26 3.46
4318 4963 1.353103 GGTGCGGCATCTGAAATCG 59.647 57.895 5.72 0.00 0.00 3.34
4344 4989 7.499292 AGAGAGATCTATGACCAAATCAACAG 58.501 38.462 0.00 0.00 41.93 3.16
4350 4995 6.182627 TCTATGACCAAATCAACAGCTTCAT 58.817 36.000 0.00 0.00 41.93 2.57
4353 4998 6.198650 TGACCAAATCAACAGCTTCATATG 57.801 37.500 0.00 0.00 33.02 1.78
4365 5010 7.516198 ACAGCTTCATATGTTAAATGATCCC 57.484 36.000 1.90 0.00 33.52 3.85
4366 5011 6.205464 ACAGCTTCATATGTTAAATGATCCCG 59.795 38.462 1.90 0.00 33.52 5.14
4367 5012 5.182001 AGCTTCATATGTTAAATGATCCCGC 59.818 40.000 1.90 0.00 33.52 6.13
4368 5013 5.619981 GCTTCATATGTTAAATGATCCCGCC 60.620 44.000 1.90 0.00 33.52 6.13
4369 5014 5.241403 TCATATGTTAAATGATCCCGCCT 57.759 39.130 1.90 0.00 0.00 5.52
4381 5026 0.245539 TCCCGCCTTGTCTTAACTCG 59.754 55.000 0.00 0.00 0.00 4.18
4390 5035 1.871039 TGTCTTAACTCGGCTGTTTGC 59.129 47.619 0.00 0.00 41.94 3.68
4412 5057 0.533755 AGAGCGATTAGTGCCATGCC 60.534 55.000 0.00 0.00 0.00 4.40
4448 5093 0.328258 ATTGGTAGGTGGCCACACTC 59.672 55.000 35.78 23.13 46.85 3.51
4472 5153 5.276395 CGTGGACGCTGAAGATTAAATACTG 60.276 44.000 0.00 0.00 0.00 2.74
4507 5191 2.290705 TGACTGTATCTGGGACGAGTGA 60.291 50.000 0.00 0.00 0.00 3.41
4526 5210 3.753797 GTGAGACCTGAAAAACTGGATCC 59.246 47.826 4.20 4.20 40.23 3.36
4532 5216 5.208121 ACCTGAAAAACTGGATCCAAAGAA 58.792 37.500 17.00 0.00 40.23 2.52
4608 5293 1.401539 GCGCTCCTTCAACCAACAATC 60.402 52.381 0.00 0.00 0.00 2.67
4627 5320 0.445436 CAGCTTGCATCACCGTCTTC 59.555 55.000 0.00 0.00 0.00 2.87
4628 5321 1.016130 AGCTTGCATCACCGTCTTCG 61.016 55.000 0.00 0.00 0.00 3.79
4629 5322 1.014044 GCTTGCATCACCGTCTTCGA 61.014 55.000 0.00 0.00 39.71 3.71
4630 5323 1.428448 CTTGCATCACCGTCTTCGAA 58.572 50.000 0.00 0.00 39.71 3.71
4631 5324 1.798223 CTTGCATCACCGTCTTCGAAA 59.202 47.619 0.00 0.00 39.71 3.46
4632 5325 1.428448 TGCATCACCGTCTTCGAAAG 58.572 50.000 0.00 0.00 39.71 2.62
4633 5326 1.270094 TGCATCACCGTCTTCGAAAGT 60.270 47.619 0.00 0.00 39.71 2.66
4634 5327 1.798813 GCATCACCGTCTTCGAAAGTT 59.201 47.619 0.00 0.00 39.71 2.66
4650 5343 4.157840 CGAAAGTTTGATTTTCCTAGGGGG 59.842 45.833 9.46 0.00 32.26 5.40
4668 5361 1.886542 GGGAAAGTCGGCATCAACTTT 59.113 47.619 0.43 0.43 45.77 2.66
4671 5364 3.904136 AAAGTCGGCATCAACTTTCTG 57.096 42.857 0.00 0.00 40.74 3.02
4677 5370 5.986135 AGTCGGCATCAACTTTCTGATATAC 59.014 40.000 0.00 0.00 34.20 1.47
4678 5371 5.986135 GTCGGCATCAACTTTCTGATATACT 59.014 40.000 0.00 0.00 34.20 2.12
4679 5372 7.014326 AGTCGGCATCAACTTTCTGATATACTA 59.986 37.037 0.00 0.00 34.20 1.82
4680 5373 7.115095 GTCGGCATCAACTTTCTGATATACTAC 59.885 40.741 0.00 0.00 34.20 2.73
4681 5374 7.014326 TCGGCATCAACTTTCTGATATACTACT 59.986 37.037 0.00 0.00 34.20 2.57
4682 5375 7.327275 CGGCATCAACTTTCTGATATACTACTC 59.673 40.741 0.00 0.00 34.20 2.59
4723 5416 1.010797 GTACATGCTTGGCGATGCG 60.011 57.895 4.44 0.00 0.00 4.73
4754 5447 4.441792 GCAAGTAGCAATAATTTTGGGGG 58.558 43.478 0.00 0.00 44.79 5.40
4783 5477 2.359975 CCAGGCCGGGTCTTTCAC 60.360 66.667 14.74 0.00 0.00 3.18
4784 5478 2.359975 CAGGCCGGGTCTTTCACC 60.360 66.667 2.18 0.00 45.97 4.02
4795 5489 4.590850 GGTCTTTCACCAAGATTTGCTT 57.409 40.909 0.00 0.00 45.98 3.91
4796 5490 4.550422 GGTCTTTCACCAAGATTTGCTTC 58.450 43.478 0.00 0.00 45.98 3.86
4797 5491 4.550422 GTCTTTCACCAAGATTTGCTTCC 58.450 43.478 0.00 0.00 43.72 3.46
4798 5492 3.253188 TCTTTCACCAAGATTTGCTTCCG 59.747 43.478 0.00 0.00 36.51 4.30
4799 5493 0.881118 TCACCAAGATTTGCTTCCGC 59.119 50.000 0.00 0.00 33.60 5.54
4800 5494 0.109132 CACCAAGATTTGCTTCCGCC 60.109 55.000 0.00 0.00 33.60 6.13
4801 5495 0.539438 ACCAAGATTTGCTTCCGCCA 60.539 50.000 0.00 0.00 33.60 5.69
4802 5496 0.109132 CCAAGATTTGCTTCCGCCAC 60.109 55.000 0.00 0.00 33.60 5.01
4803 5497 0.109132 CAAGATTTGCTTCCGCCACC 60.109 55.000 0.00 0.00 33.60 4.61
4804 5498 1.586154 AAGATTTGCTTCCGCCACCG 61.586 55.000 0.00 0.00 34.43 4.94
4814 5508 2.125673 CGCCACCGGTCGAGAAAT 60.126 61.111 2.59 0.00 0.00 2.17
4815 5509 2.165301 CGCCACCGGTCGAGAAATC 61.165 63.158 2.59 0.00 0.00 2.17
4816 5510 1.814169 GCCACCGGTCGAGAAATCC 60.814 63.158 2.59 0.00 0.00 3.01
4817 5511 1.518572 CCACCGGTCGAGAAATCCG 60.519 63.158 2.59 4.52 43.30 4.18
4820 5514 2.106332 CGGTCGAGAAATCCGGGG 59.894 66.667 0.00 0.00 40.49 5.73
4821 5515 2.203029 GGTCGAGAAATCCGGGGC 60.203 66.667 0.00 0.00 0.00 5.80
4822 5516 2.585247 GTCGAGAAATCCGGGGCG 60.585 66.667 0.00 0.00 0.00 6.13
4823 5517 4.524318 TCGAGAAATCCGGGGCGC 62.524 66.667 0.00 0.00 0.00 6.53
4824 5518 4.830765 CGAGAAATCCGGGGCGCA 62.831 66.667 10.83 0.00 0.00 6.09
4825 5519 2.437716 GAGAAATCCGGGGCGCAA 60.438 61.111 10.83 0.00 0.00 4.85
4826 5520 2.034999 AGAAATCCGGGGCGCAAA 59.965 55.556 10.83 0.00 0.00 3.68
4827 5521 1.379843 AGAAATCCGGGGCGCAAAT 60.380 52.632 10.83 0.00 0.00 2.32
4828 5522 0.970427 AGAAATCCGGGGCGCAAATT 60.970 50.000 10.83 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 56 0.370273 GTGCGTCACGGTTCATGATC 59.630 55.000 0.00 0.00 0.00 2.92
89 95 4.369182 AGTGTCTCGGTTTTTCTACAGTG 58.631 43.478 0.00 0.00 0.00 3.66
90 96 4.667519 AGTGTCTCGGTTTTTCTACAGT 57.332 40.909 0.00 0.00 0.00 3.55
91 97 7.653767 ATTTAGTGTCTCGGTTTTTCTACAG 57.346 36.000 0.00 0.00 0.00 2.74
94 100 9.525409 GCTATATTTAGTGTCTCGGTTTTTCTA 57.475 33.333 0.00 0.00 0.00 2.10
130 137 1.736645 CCCTGCGTCCAACTGTACG 60.737 63.158 0.00 0.00 41.92 3.67
164 171 1.202076 GGCAGCTCTGACGCATTTAAC 60.202 52.381 0.29 0.00 0.00 2.01
206 213 9.282569 GCACATAGTAAGTATACCTACTACAGT 57.717 37.037 19.18 17.36 37.20 3.55
207 214 8.728833 GGCACATAGTAAGTATACCTACTACAG 58.271 40.741 19.18 16.89 37.20 2.74
208 215 7.388776 CGGCACATAGTAAGTATACCTACTACA 59.611 40.741 19.18 5.36 37.20 2.74
209 216 7.625185 GCGGCACATAGTAAGTATACCTACTAC 60.625 44.444 19.18 9.69 37.20 2.73
210 217 6.372659 GCGGCACATAGTAAGTATACCTACTA 59.627 42.308 19.12 19.12 37.20 1.82
211 218 5.182760 GCGGCACATAGTAAGTATACCTACT 59.817 44.000 16.47 16.47 39.97 2.57
212 219 5.048504 TGCGGCACATAGTAAGTATACCTAC 60.049 44.000 0.00 3.78 32.08 3.18
213 220 5.072055 TGCGGCACATAGTAAGTATACCTA 58.928 41.667 0.00 0.00 32.08 3.08
214 221 3.893200 TGCGGCACATAGTAAGTATACCT 59.107 43.478 0.00 0.00 32.08 3.08
215 222 4.247267 TGCGGCACATAGTAAGTATACC 57.753 45.455 0.00 0.00 32.08 2.73
216 223 6.416514 GTTTTGCGGCACATAGTAAGTATAC 58.583 40.000 0.05 0.00 0.00 1.47
217 224 5.524646 GGTTTTGCGGCACATAGTAAGTATA 59.475 40.000 0.05 0.00 0.00 1.47
218 225 4.334481 GGTTTTGCGGCACATAGTAAGTAT 59.666 41.667 0.05 0.00 0.00 2.12
271 282 0.305313 GAGGCGTCTCTGTAGCGTAG 59.695 60.000 10.47 0.00 37.07 3.51
340 359 2.031944 GGGACAAACGAGAAAAGTGCTC 60.032 50.000 0.00 0.00 0.00 4.26
350 369 3.119388 TGTTATACGAGGGGACAAACGAG 60.119 47.826 0.00 0.00 0.00 4.18
438 515 3.188786 GCCGGTCATGTGCTCGAC 61.189 66.667 1.90 0.00 0.00 4.20
450 527 2.358737 CTTTTGGAGCGAGCCGGT 60.359 61.111 1.90 0.00 41.33 5.28
469 546 0.672401 TTTAGAGGGCCGTCAAAGCG 60.672 55.000 26.40 0.00 0.00 4.68
514 644 3.427243 GTGTCACGTAGTATGAGTGAGC 58.573 50.000 0.00 0.00 44.32 4.26
515 645 3.439129 TGGTGTCACGTAGTATGAGTGAG 59.561 47.826 0.00 0.00 44.32 3.51
516 646 3.414269 TGGTGTCACGTAGTATGAGTGA 58.586 45.455 0.00 0.00 41.61 3.41
517 647 3.759418 CTGGTGTCACGTAGTATGAGTG 58.241 50.000 0.00 0.00 41.61 3.51
518 648 2.163815 GCTGGTGTCACGTAGTATGAGT 59.836 50.000 0.00 0.00 41.61 3.41
519 649 2.479730 GGCTGGTGTCACGTAGTATGAG 60.480 54.545 0.00 0.00 41.61 2.90
520 650 1.475280 GGCTGGTGTCACGTAGTATGA 59.525 52.381 0.00 0.00 41.61 2.15
521 651 1.470979 GGGCTGGTGTCACGTAGTATG 60.471 57.143 0.00 0.00 41.61 2.39
522 652 0.822164 GGGCTGGTGTCACGTAGTAT 59.178 55.000 0.00 0.00 41.61 2.12
523 653 1.588824 CGGGCTGGTGTCACGTAGTA 61.589 60.000 0.00 0.00 41.61 1.82
525 655 2.126071 CGGGCTGGTGTCACGTAG 60.126 66.667 0.00 0.00 0.00 3.51
554 684 3.370978 CCTACAAGATACAGCACGGTTTG 59.629 47.826 0.00 0.00 0.00 2.93
555 685 3.596214 CCTACAAGATACAGCACGGTTT 58.404 45.455 0.00 0.00 0.00 3.27
559 706 1.137086 AGCCCTACAAGATACAGCACG 59.863 52.381 0.00 0.00 0.00 5.34
562 709 1.202698 CCCAGCCCTACAAGATACAGC 60.203 57.143 0.00 0.00 0.00 4.40
586 733 3.201290 GAGTGATGATAGCCAGTGGTTG 58.799 50.000 11.74 0.00 0.00 3.77
587 734 2.840038 TGAGTGATGATAGCCAGTGGTT 59.160 45.455 11.74 7.53 0.00 3.67
588 735 2.169352 GTGAGTGATGATAGCCAGTGGT 59.831 50.000 11.74 0.00 0.00 4.16
589 736 2.433604 AGTGAGTGATGATAGCCAGTGG 59.566 50.000 4.20 4.20 0.00 4.00
594 747 1.957177 TCCGAGTGAGTGATGATAGCC 59.043 52.381 0.00 0.00 0.00 3.93
624 808 1.078848 AGTAGTACTCGCGACCGGT 60.079 57.895 6.92 6.92 34.56 5.28
627 811 0.522915 GTGCAGTAGTACTCGCGACC 60.523 60.000 3.71 0.00 0.00 4.79
642 826 2.946990 AGATTCATCATTCATGCGTGCA 59.053 40.909 0.00 0.00 31.70 4.57
643 827 3.620929 AGATTCATCATTCATGCGTGC 57.379 42.857 0.00 0.00 31.70 5.34
644 828 5.676953 CAGTAGATTCATCATTCATGCGTG 58.323 41.667 0.00 0.00 31.70 5.34
645 829 4.212847 GCAGTAGATTCATCATTCATGCGT 59.787 41.667 0.00 0.00 31.70 5.24
646 830 4.451435 AGCAGTAGATTCATCATTCATGCG 59.549 41.667 0.00 0.00 35.21 4.73
647 831 5.943706 AGCAGTAGATTCATCATTCATGC 57.056 39.130 0.00 0.00 31.70 4.06
648 832 6.932960 TGGTAGCAGTAGATTCATCATTCATG 59.067 38.462 0.00 0.00 0.00 3.07
649 833 6.933521 GTGGTAGCAGTAGATTCATCATTCAT 59.066 38.462 0.00 0.00 0.00 2.57
650 834 6.098838 AGTGGTAGCAGTAGATTCATCATTCA 59.901 38.462 0.00 0.00 0.00 2.57
651 835 6.520272 AGTGGTAGCAGTAGATTCATCATTC 58.480 40.000 0.00 0.00 0.00 2.67
652 836 6.491714 AGTGGTAGCAGTAGATTCATCATT 57.508 37.500 0.00 0.00 0.00 2.57
653 837 6.780031 ACTAGTGGTAGCAGTAGATTCATCAT 59.220 38.462 33.12 13.10 33.51 2.45
654 838 6.129874 ACTAGTGGTAGCAGTAGATTCATCA 58.870 40.000 33.12 3.78 33.51 3.07
655 839 6.642707 ACTAGTGGTAGCAGTAGATTCATC 57.357 41.667 33.12 4.07 33.51 2.92
695 882 0.320771 ACTGACCGAGTGAATGTGCC 60.321 55.000 0.00 0.00 31.75 5.01
696 883 1.071605 GACTGACCGAGTGAATGTGC 58.928 55.000 0.00 0.00 33.83 4.57
697 884 2.288457 ACTGACTGACCGAGTGAATGTG 60.288 50.000 0.00 0.00 33.83 3.21
698 885 1.964223 ACTGACTGACCGAGTGAATGT 59.036 47.619 0.00 0.00 33.83 2.71
699 886 2.029918 TGACTGACTGACCGAGTGAATG 60.030 50.000 0.00 0.00 33.83 2.67
700 887 2.029828 GTGACTGACTGACCGAGTGAAT 60.030 50.000 0.00 0.00 33.83 2.57
701 888 1.337071 GTGACTGACTGACCGAGTGAA 59.663 52.381 0.00 0.00 33.83 3.18
717 904 0.660300 CCTTTCGCGCCAAAAGTGAC 60.660 55.000 21.65 0.00 32.90 3.67
718 905 1.652012 CCTTTCGCGCCAAAAGTGA 59.348 52.632 21.65 2.50 32.90 3.41
719 906 1.371635 CCCTTTCGCGCCAAAAGTG 60.372 57.895 21.65 11.76 32.90 3.16
720 907 1.515521 CTCCCTTTCGCGCCAAAAGT 61.516 55.000 21.65 0.00 32.90 2.66
721 908 1.210155 CTCCCTTTCGCGCCAAAAG 59.790 57.895 18.37 18.37 34.25 2.27
722 909 1.228003 TCTCCCTTTCGCGCCAAAA 60.228 52.632 0.00 1.69 0.00 2.44
736 925 1.383803 ATCCTCACCCTGCCTCTCC 60.384 63.158 0.00 0.00 0.00 3.71
745 934 0.984230 TCAGTTGGTCATCCTCACCC 59.016 55.000 0.00 0.00 32.24 4.61
751 940 5.010282 AGGTAAACAATCAGTTGGTCATCC 58.990 41.667 0.00 0.00 41.19 3.51
752 941 5.106157 CCAGGTAAACAATCAGTTGGTCATC 60.106 44.000 0.00 0.00 41.19 2.92
753 942 4.766891 CCAGGTAAACAATCAGTTGGTCAT 59.233 41.667 0.00 0.00 41.19 3.06
774 963 0.178964 CCCTGCTCTTTTTCACCCCA 60.179 55.000 0.00 0.00 0.00 4.96
786 983 4.925861 GCGGCTGGATCCCTGCTC 62.926 72.222 21.25 13.05 45.73 4.26
788 985 4.496336 AAGCGGCTGGATCCCTGC 62.496 66.667 9.90 13.56 45.73 4.85
789 986 2.203126 GAAGCGGCTGGATCCCTG 60.203 66.667 9.90 3.18 0.00 4.45
865 1062 1.437986 GTGACTAGTAGCTGGCGGG 59.562 63.158 0.00 0.00 0.00 6.13
916 1129 2.835895 GAGGGAGGACGGGAGCTC 60.836 72.222 4.71 4.71 0.00 4.09
924 1137 2.665603 GCACAGTGGAGGGAGGAC 59.334 66.667 1.84 0.00 0.00 3.85
925 1138 2.607750 GGCACAGTGGAGGGAGGA 60.608 66.667 1.84 0.00 0.00 3.71
926 1139 4.087892 CGGCACAGTGGAGGGAGG 62.088 72.222 1.84 0.00 0.00 4.30
974 1207 1.619363 TGTGGATCAAGGGAGGGGG 60.619 63.158 0.00 0.00 0.00 5.40
975 1208 1.609783 GTGTGGATCAAGGGAGGGG 59.390 63.158 0.00 0.00 0.00 4.79
1062 1305 1.881602 CTGCTGCTTCTTCTTGGCC 59.118 57.895 0.00 0.00 0.00 5.36
1121 1379 4.436998 CGTCCGCCGCCTTCTTCT 62.437 66.667 0.00 0.00 0.00 2.85
1134 1392 1.378124 CCTCGAAGTCCTCCTCGTCC 61.378 65.000 0.00 0.00 0.00 4.79
1137 1395 2.776913 GGCCTCGAAGTCCTCCTCG 61.777 68.421 0.00 0.00 0.00 4.63
1167 1425 3.082579 GCTGGAGTCCCGCTCGAAT 62.083 63.158 17.63 0.00 45.03 3.34
1317 1575 5.358442 GGAAAATAAGAAGGGAAGAGGAAGC 59.642 44.000 0.00 0.00 0.00 3.86
1335 1593 5.998363 GCCCTCTCGTAGATAAATGGAAAAT 59.002 40.000 0.00 0.00 33.89 1.82
1337 1595 4.407621 TGCCCTCTCGTAGATAAATGGAAA 59.592 41.667 0.00 0.00 33.89 3.13
1338 1596 3.964688 TGCCCTCTCGTAGATAAATGGAA 59.035 43.478 0.00 0.00 33.89 3.53
1340 1598 4.336889 TTGCCCTCTCGTAGATAAATGG 57.663 45.455 0.00 0.00 33.89 3.16
1341 1599 6.049149 TCTTTTGCCCTCTCGTAGATAAATG 58.951 40.000 0.00 0.00 33.89 2.32
1348 1606 3.926616 TCTTTCTTTTGCCCTCTCGTAG 58.073 45.455 0.00 0.00 0.00 3.51
1361 1619 1.682344 GGCGGGGGCATCTTTCTTT 60.682 57.895 0.00 0.00 0.00 2.52
1362 1620 2.043953 GGCGGGGGCATCTTTCTT 60.044 61.111 0.00 0.00 0.00 2.52
1363 1621 3.017581 AGGCGGGGGCATCTTTCT 61.018 61.111 0.00 0.00 0.00 2.52
1364 1622 2.830370 CAGGCGGGGGCATCTTTC 60.830 66.667 0.00 0.00 0.00 2.62
1394 1652 4.396478 TGTAGAACATCGTCTCTCCTCAAG 59.604 45.833 0.00 0.00 0.00 3.02
1451 1710 5.975988 TCAAGATTAAATCTACCAGGCCT 57.024 39.130 0.00 0.00 39.08 5.19
1472 1737 0.033228 CTGACTCCATCCCTCGCATC 59.967 60.000 0.00 0.00 0.00 3.91
1473 1738 0.689080 ACTGACTCCATCCCTCGCAT 60.689 55.000 0.00 0.00 0.00 4.73
1474 1739 0.033503 TACTGACTCCATCCCTCGCA 60.034 55.000 0.00 0.00 0.00 5.10
1475 1740 0.386113 GTACTGACTCCATCCCTCGC 59.614 60.000 0.00 0.00 0.00 5.03
1476 1741 2.060050 AGTACTGACTCCATCCCTCG 57.940 55.000 0.00 0.00 0.00 4.63
1477 1742 2.432510 CCAAGTACTGACTCCATCCCTC 59.567 54.545 0.00 0.00 33.58 4.30
1478 1743 2.225650 ACCAAGTACTGACTCCATCCCT 60.226 50.000 0.00 0.00 33.58 4.20
1479 1744 2.188817 ACCAAGTACTGACTCCATCCC 58.811 52.381 0.00 0.00 33.58 3.85
1491 1756 5.173664 AGCGGAATTTACAGTACCAAGTAC 58.826 41.667 0.00 0.00 39.10 2.73
1492 1757 5.410355 AGCGGAATTTACAGTACCAAGTA 57.590 39.130 0.00 0.00 0.00 2.24
1493 1758 4.281898 AGCGGAATTTACAGTACCAAGT 57.718 40.909 0.00 0.00 0.00 3.16
1494 1759 4.454504 ACAAGCGGAATTTACAGTACCAAG 59.545 41.667 0.00 0.00 0.00 3.61
1495 1760 4.391155 ACAAGCGGAATTTACAGTACCAA 58.609 39.130 0.00 0.00 0.00 3.67
1496 1761 4.010667 ACAAGCGGAATTTACAGTACCA 57.989 40.909 0.00 0.00 0.00 3.25
1497 1762 5.366829 AAACAAGCGGAATTTACAGTACC 57.633 39.130 0.00 0.00 0.00 3.34
1498 1763 6.309436 GGTAAACAAGCGGAATTTACAGTAC 58.691 40.000 13.95 0.00 39.50 2.73
1499 1764 5.412286 GGGTAAACAAGCGGAATTTACAGTA 59.588 40.000 13.95 0.00 39.50 2.74
1500 1765 4.216902 GGGTAAACAAGCGGAATTTACAGT 59.783 41.667 13.95 0.00 39.50 3.55
1501 1766 4.216687 TGGGTAAACAAGCGGAATTTACAG 59.783 41.667 13.95 0.00 39.50 2.74
1502 1767 4.142790 TGGGTAAACAAGCGGAATTTACA 58.857 39.130 13.95 0.00 39.50 2.41
1510 1775 2.094752 CCAGATTTGGGTAAACAAGCGG 60.095 50.000 0.00 0.00 41.05 5.52
1532 1801 3.723681 AGGATCTTATGCCCTGGAATTGA 59.276 43.478 0.00 0.00 0.00 2.57
1533 1802 4.109877 AGGATCTTATGCCCTGGAATTG 57.890 45.455 0.00 0.00 0.00 2.32
1539 1808 4.221703 CACTAGGTAGGATCTTATGCCCTG 59.778 50.000 3.52 0.00 0.00 4.45
1542 1811 3.367498 CGCACTAGGTAGGATCTTATGCC 60.367 52.174 0.00 0.00 0.00 4.40
1545 1814 4.383931 TCCGCACTAGGTAGGATCTTAT 57.616 45.455 0.00 0.00 0.00 1.73
1547 1816 2.750141 TCCGCACTAGGTAGGATCTT 57.250 50.000 0.00 0.00 0.00 2.40
1556 1825 2.561569 CCTACCAAAATCCGCACTAGG 58.438 52.381 0.00 0.00 0.00 3.02
1558 1827 1.279558 TGCCTACCAAAATCCGCACTA 59.720 47.619 0.00 0.00 0.00 2.74
1563 1832 1.401905 GAGCTTGCCTACCAAAATCCG 59.598 52.381 0.00 0.00 31.94 4.18
1580 1849 1.066573 TGCAGACTCTTAAGGCAGAGC 60.067 52.381 1.85 3.21 43.83 4.09
1586 1855 9.565213 CTGAAAATAAATTGCAGACTCTTAAGG 57.435 33.333 1.85 0.00 0.00 2.69
1591 1860 5.713861 AGGCTGAAAATAAATTGCAGACTCT 59.286 36.000 0.00 0.00 36.98 3.24
1592 1861 5.958955 AGGCTGAAAATAAATTGCAGACTC 58.041 37.500 0.00 0.00 36.98 3.36
1594 1863 8.532977 TTTAAGGCTGAAAATAAATTGCAGAC 57.467 30.769 0.00 0.00 33.60 3.51
1595 1864 9.369904 GATTTAAGGCTGAAAATAAATTGCAGA 57.630 29.630 0.06 0.00 30.36 4.26
1617 1886 9.421399 CCCCACCTTACTATTCTAAATTGATTT 57.579 33.333 0.00 0.00 0.00 2.17
1621 1890 6.906848 TCCCCCACCTTACTATTCTAAATTG 58.093 40.000 0.00 0.00 0.00 2.32
1622 1891 7.723109 ATCCCCCACCTTACTATTCTAAATT 57.277 36.000 0.00 0.00 0.00 1.82
1623 1892 7.352522 TCAATCCCCCACCTTACTATTCTAAAT 59.647 37.037 0.00 0.00 0.00 1.40
1629 1898 4.106341 CCATCAATCCCCCACCTTACTATT 59.894 45.833 0.00 0.00 0.00 1.73
1630 1899 3.657727 CCATCAATCCCCCACCTTACTAT 59.342 47.826 0.00 0.00 0.00 2.12
1648 1954 4.010349 CTCAACTACCTTGGAAACCCATC 58.990 47.826 0.00 0.00 32.92 3.51
1652 1958 3.072622 AGACCTCAACTACCTTGGAAACC 59.927 47.826 0.00 0.00 0.00 3.27
1654 1960 3.006537 CGAGACCTCAACTACCTTGGAAA 59.993 47.826 0.00 0.00 0.00 3.13
1658 1964 2.352814 CCACGAGACCTCAACTACCTTG 60.353 54.545 0.00 0.00 0.00 3.61
1671 1977 0.582005 GCACTCAACAACCACGAGAC 59.418 55.000 0.00 0.00 0.00 3.36
1673 1979 1.229428 ATGCACTCAACAACCACGAG 58.771 50.000 0.00 0.00 0.00 4.18
1675 1981 2.118683 CAAATGCACTCAACAACCACG 58.881 47.619 0.00 0.00 0.00 4.94
1734 2040 0.890683 ACAGCATACAAGGCCAAAGC 59.109 50.000 5.01 0.00 38.76 3.51
1738 2044 0.403655 TTGGACAGCATACAAGGCCA 59.596 50.000 5.01 0.00 0.00 5.36
1739 2045 1.544724 TTTGGACAGCATACAAGGCC 58.455 50.000 0.00 0.00 0.00 5.19
1762 2068 5.310451 TCATAGTACAAGGCCGAAGTTTTT 58.690 37.500 0.00 0.00 0.00 1.94
1763 2069 4.901868 TCATAGTACAAGGCCGAAGTTTT 58.098 39.130 0.00 0.00 0.00 2.43
1764 2070 4.546829 TCATAGTACAAGGCCGAAGTTT 57.453 40.909 0.00 0.00 0.00 2.66
1765 2071 4.755266 ATCATAGTACAAGGCCGAAGTT 57.245 40.909 0.00 0.00 0.00 2.66
1766 2072 4.081087 ACAATCATAGTACAAGGCCGAAGT 60.081 41.667 0.00 0.00 0.00 3.01
1767 2073 4.442706 ACAATCATAGTACAAGGCCGAAG 58.557 43.478 0.00 0.00 0.00 3.79
1768 2074 4.481368 ACAATCATAGTACAAGGCCGAA 57.519 40.909 0.00 0.00 0.00 4.30
1769 2075 4.038763 CCTACAATCATAGTACAAGGCCGA 59.961 45.833 0.00 0.00 0.00 5.54
1770 2076 4.038763 TCCTACAATCATAGTACAAGGCCG 59.961 45.833 0.00 0.00 0.00 6.13
1771 2077 5.546621 TCCTACAATCATAGTACAAGGCC 57.453 43.478 0.00 0.00 0.00 5.19
1772 2078 8.989980 GTTAATCCTACAATCATAGTACAAGGC 58.010 37.037 0.00 0.00 0.00 4.35
1773 2079 9.490379 GGTTAATCCTACAATCATAGTACAAGG 57.510 37.037 0.00 0.00 0.00 3.61
1807 2113 9.989296 ATAGATAGATCTTATTAGAGCACCACT 57.011 33.333 0.00 0.00 39.28 4.00
2368 2868 7.289310 TGAGGTTTCATCCAGCAATATGATAA 58.711 34.615 0.00 0.00 0.00 1.75
2390 2890 9.269453 TCATTTCTCACTGCTATCATATTTGAG 57.731 33.333 0.00 0.00 34.73 3.02
2396 2896 9.671279 TTTTCTTCATTTCTCACTGCTATCATA 57.329 29.630 0.00 0.00 0.00 2.15
2436 2936 4.038883 GGTTGCTCTACGGACTATGGTTAT 59.961 45.833 0.00 0.00 0.00 1.89
2442 2942 2.736347 ACTGGTTGCTCTACGGACTAT 58.264 47.619 0.00 0.00 0.00 2.12
2449 2949 9.085250 GTTTATAGAACTAACTGGTTGCTCTAC 57.915 37.037 0.00 0.00 0.00 2.59
2454 2954 7.900782 TGAGTTTATAGAACTAACTGGTTGC 57.099 36.000 0.00 0.00 32.58 4.17
2510 3010 9.787435 TCAATTAACCTTGTAGAAACATACTGT 57.213 29.630 0.00 0.00 34.97 3.55
2522 3022 9.787435 ACTGTAGAAACATCAATTAACCTTGTA 57.213 29.630 0.00 0.00 34.37 2.41
2523 3023 8.691661 ACTGTAGAAACATCAATTAACCTTGT 57.308 30.769 0.00 0.00 34.37 3.16
2565 3105 8.349983 GGAGTATGAGAATACTGTCTCTCTTTC 58.650 40.741 16.37 10.50 43.82 2.62
2566 3106 7.286775 GGGAGTATGAGAATACTGTCTCTCTTT 59.713 40.741 16.37 9.51 43.82 2.52
2567 3107 6.775629 GGGAGTATGAGAATACTGTCTCTCTT 59.224 42.308 16.37 13.53 43.82 2.85
2568 3108 6.126332 TGGGAGTATGAGAATACTGTCTCTCT 60.126 42.308 16.37 4.30 43.82 3.10
2569 3109 6.065374 TGGGAGTATGAGAATACTGTCTCTC 58.935 44.000 11.13 11.13 43.82 3.20
2581 3121 3.885901 CGTTCTGAGATGGGAGTATGAGA 59.114 47.826 0.00 0.00 0.00 3.27
2591 3131 5.180117 AGAATTGTGTTTCGTTCTGAGATGG 59.820 40.000 0.00 0.00 30.27 3.51
2592 3132 6.075918 CAGAATTGTGTTTCGTTCTGAGATG 58.924 40.000 7.93 0.00 46.47 2.90
2595 3135 4.776743 CCAGAATTGTGTTTCGTTCTGAG 58.223 43.478 13.75 2.96 46.47 3.35
2602 3142 0.243636 GGGGCCAGAATTGTGTTTCG 59.756 55.000 4.39 0.00 0.00 3.46
2618 3158 3.361786 ACCGGTAATGAAAAGAATGGGG 58.638 45.455 4.49 0.00 0.00 4.96
2624 3164 9.333724 GGAGAATATTAACCGGTAATGAAAAGA 57.666 33.333 8.00 0.00 34.18 2.52
2672 3213 9.262358 GTTCCACAATACATCTCTAGGATAAAC 57.738 37.037 0.00 0.00 32.64 2.01
2730 3271 6.216801 TGTCCCATATACACACAGTACTTC 57.783 41.667 0.00 0.00 35.05 3.01
2734 3275 6.616577 TCCTATGTCCCATATACACACAGTA 58.383 40.000 0.00 0.00 37.06 2.74
2735 3312 5.464069 TCCTATGTCCCATATACACACAGT 58.536 41.667 0.00 0.00 0.00 3.55
2770 3354 7.092079 TGCAAGAGACAAATTCATATGTTTGG 58.908 34.615 18.04 8.23 39.12 3.28
2785 3369 6.436218 TGTTTACTCTAGGTATGCAAGAGACA 59.564 38.462 17.24 9.48 39.29 3.41
2796 3380 6.354794 ACAGTGCATTGTTTACTCTAGGTA 57.645 37.500 9.35 0.00 0.00 3.08
2798 3382 7.667043 TTAACAGTGCATTGTTTACTCTAGG 57.333 36.000 29.28 0.00 41.31 3.02
2814 3398 6.599244 ACAAGTGATCACCCATATTAACAGTG 59.401 38.462 22.21 0.58 0.00 3.66
2849 3433 8.008513 AGATTTTACGGTACACTGATATCTGT 57.991 34.615 9.28 9.28 0.00 3.41
2860 3444 4.264253 TCCTCGAGAGATTTTACGGTACA 58.736 43.478 15.71 0.00 40.84 2.90
2873 3457 6.334202 ACTAGCTAAACAAAATCCTCGAGAG 58.666 40.000 15.71 4.11 0.00 3.20
2877 3461 5.869888 ACTGACTAGCTAAACAAAATCCTCG 59.130 40.000 0.00 0.00 0.00 4.63
2878 3462 7.522374 CAACTGACTAGCTAAACAAAATCCTC 58.478 38.462 0.00 0.00 0.00 3.71
2891 3477 5.867903 ATCTCATTAGCAACTGACTAGCT 57.132 39.130 0.00 0.00 42.14 3.32
2894 3480 7.118245 CACAACAATCTCATTAGCAACTGACTA 59.882 37.037 0.00 0.00 0.00 2.59
2900 3486 4.168760 GGCACAACAATCTCATTAGCAAC 58.831 43.478 0.00 0.00 0.00 4.17
2920 3506 2.369394 CTCCAATAGGAAACTGGTGGC 58.631 52.381 0.00 0.00 45.19 5.01
2937 3523 3.567478 ACATCCCAACAAGATAGCTCC 57.433 47.619 0.00 0.00 0.00 4.70
2938 3524 7.445945 AGTAATACATCCCAACAAGATAGCTC 58.554 38.462 0.00 0.00 0.00 4.09
2996 3584 0.895100 TTTGGCAGCAGGTCCATCAC 60.895 55.000 0.00 0.00 31.54 3.06
3072 3660 1.205417 CGGATTTCAGCTGCCCATTTT 59.795 47.619 9.47 0.00 0.00 1.82
3297 3885 4.204799 CATGATTGAAAGGCTCATCCTCA 58.795 43.478 0.00 0.00 46.94 3.86
3319 3907 3.132646 AGATCATTGTCTCCTCTGCTCAC 59.867 47.826 0.00 0.00 0.00 3.51
3422 4010 4.082190 CGAATGTCTCAGTAGGAGGTTTCA 60.082 45.833 0.00 0.00 44.19 2.69
3423 4011 4.425520 CGAATGTCTCAGTAGGAGGTTTC 58.574 47.826 0.00 0.00 44.19 2.78
3424 4012 3.195825 CCGAATGTCTCAGTAGGAGGTTT 59.804 47.826 0.00 0.00 44.19 3.27
3425 4013 2.761208 CCGAATGTCTCAGTAGGAGGTT 59.239 50.000 0.00 0.00 44.19 3.50
3426 4014 2.379972 CCGAATGTCTCAGTAGGAGGT 58.620 52.381 0.00 0.00 44.19 3.85
3427 4015 1.683917 CCCGAATGTCTCAGTAGGAGG 59.316 57.143 0.00 0.00 44.19 4.30
3428 4016 2.656002 TCCCGAATGTCTCAGTAGGAG 58.344 52.381 0.00 0.00 45.49 3.69
3429 4017 2.820728 TCCCGAATGTCTCAGTAGGA 57.179 50.000 0.00 0.00 0.00 2.94
3432 4020 3.767131 TGTTCATCCCGAATGTCTCAGTA 59.233 43.478 0.00 0.00 35.63 2.74
3465 4053 1.220529 CAAACGAGTTGCTGCTCTGA 58.779 50.000 0.00 0.00 33.55 3.27
3480 4068 2.814336 CCCAAAGTCAGTAGAGCCAAAC 59.186 50.000 0.00 0.00 0.00 2.93
3567 4158 0.596859 GGTAAGCGGGCTCGACATAC 60.597 60.000 12.03 9.04 39.00 2.39
3570 4161 2.678934 AGGTAAGCGGGCTCGACA 60.679 61.111 12.03 0.00 39.00 4.35
3572 4163 4.143333 GCAGGTAAGCGGGCTCGA 62.143 66.667 12.03 0.00 39.00 4.04
3610 4201 1.002468 CACGCCAAAGTTGTTCCTCAG 60.002 52.381 0.00 0.00 0.00 3.35
3777 4368 2.123077 AGGCTCCAGAGATCCCCG 60.123 66.667 0.00 0.00 0.00 5.73
3798 4389 3.267860 GCCGCCATGAAGAGCTCG 61.268 66.667 8.37 0.00 0.00 5.03
3816 4407 0.974383 AGAACCCTCAGTAACCACCG 59.026 55.000 0.00 0.00 0.00 4.94
3835 4426 0.176910 TCGCAGACCACACTGACAAA 59.823 50.000 0.00 0.00 39.94 2.83
3854 4445 4.881273 TCGATGGCTTACATTTGTGCTATT 59.119 37.500 0.00 0.00 40.72 1.73
3876 4467 1.470098 AGAACGAAACCATGCAGCATC 59.530 47.619 4.38 0.00 0.00 3.91
3879 4470 1.160137 AGAGAACGAAACCATGCAGC 58.840 50.000 0.00 0.00 0.00 5.25
3906 4499 7.548780 ACAACAGTTGTATTTTGCACAAGAAAT 59.451 29.630 17.74 0.00 43.27 2.17
3914 4507 8.988064 TTTAAGAACAACAGTTGTATTTTGCA 57.012 26.923 19.45 0.78 44.59 4.08
4020 4650 2.783135 TGCAACCAGTCCTTTCATCTC 58.217 47.619 0.00 0.00 0.00 2.75
4028 4658 1.279496 TAGCAGATGCAACCAGTCCT 58.721 50.000 7.68 0.00 45.16 3.85
4032 4662 3.486375 CGAAACATAGCAGATGCAACCAG 60.486 47.826 7.68 0.00 45.16 4.00
4066 4696 5.873146 AGTCTTTTACCATAGCTAGGGTC 57.127 43.478 32.02 17.16 39.96 4.46
4079 4709 3.671702 GCTGGCAGCATGAAGTCTTTTAC 60.672 47.826 33.33 0.00 41.89 2.01
4082 4712 0.886563 GCTGGCAGCATGAAGTCTTT 59.113 50.000 33.33 0.00 41.89 2.52
4098 4728 1.421410 GACATACGGTTCCGCTGCTG 61.421 60.000 11.32 6.33 0.00 4.41
4104 4734 6.477688 ACTTATAAACATGACATACGGTTCCG 59.522 38.462 9.81 9.81 0.00 4.30
4135 4765 7.043125 CCAATCATAGAGACGATGTACAACAAG 60.043 40.741 0.00 0.00 0.00 3.16
4149 4779 3.434024 CCACATGCACCCAATCATAGAGA 60.434 47.826 0.00 0.00 0.00 3.10
4195 4825 4.352001 ACATCAGGCATATGACCAAGGTAT 59.648 41.667 4.47 0.00 30.46 2.73
4300 4945 1.089481 TCGATTTCAGATGCCGCACC 61.089 55.000 0.00 0.00 0.00 5.01
4318 4963 7.495901 TGTTGATTTGGTCATAGATCTCTCTC 58.504 38.462 0.00 0.00 36.54 3.20
4344 4989 5.393962 GCGGGATCATTTAACATATGAAGC 58.606 41.667 10.38 0.00 35.77 3.86
4350 4995 4.787551 ACAAGGCGGGATCATTTAACATA 58.212 39.130 0.00 0.00 0.00 2.29
4353 4998 3.279434 AGACAAGGCGGGATCATTTAAC 58.721 45.455 0.00 0.00 0.00 2.01
4363 5008 0.739813 CCGAGTTAAGACAAGGCGGG 60.740 60.000 0.00 0.00 34.08 6.13
4365 5010 2.079049 GCCGAGTTAAGACAAGGCG 58.921 57.895 0.00 0.00 39.54 5.52
4366 5011 1.079503 CAGCCGAGTTAAGACAAGGC 58.920 55.000 7.05 7.05 45.22 4.35
4367 5012 2.457366 ACAGCCGAGTTAAGACAAGG 57.543 50.000 0.00 0.00 0.00 3.61
4368 5013 3.607078 GCAAACAGCCGAGTTAAGACAAG 60.607 47.826 0.00 0.00 37.23 3.16
4369 5014 2.289547 GCAAACAGCCGAGTTAAGACAA 59.710 45.455 0.00 0.00 37.23 3.18
4390 5035 2.133553 CATGGCACTAATCGCTCTCAG 58.866 52.381 0.00 0.00 0.00 3.35
4396 5041 2.555547 GGGGCATGGCACTAATCGC 61.556 63.158 22.06 0.19 29.71 4.58
4412 5057 3.511146 ACCAATCAAACACTAATGCTGGG 59.489 43.478 0.00 0.00 0.00 4.45
4423 5068 1.145945 TGGCCACCTACCAATCAAACA 59.854 47.619 0.00 0.00 33.12 2.83
4424 5069 1.544246 GTGGCCACCTACCAATCAAAC 59.456 52.381 26.31 0.00 39.39 2.93
4448 5093 4.804139 AGTATTTAATCTTCAGCGTCCACG 59.196 41.667 0.00 0.00 43.27 4.94
4472 5153 1.018226 CAGTCAGCTGCAGTGCTACC 61.018 60.000 17.60 4.43 41.98 3.18
4507 5191 4.453480 TTGGATCCAGTTTTTCAGGTCT 57.547 40.909 15.53 0.00 0.00 3.85
4526 5210 2.549754 AGTGTGCAACCGATCTTCTTTG 59.450 45.455 0.00 0.00 34.36 2.77
4532 5216 0.615331 ATCCAGTGTGCAACCGATCT 59.385 50.000 0.00 0.00 34.36 2.75
4586 5270 1.165907 TGTTGGTTGAAGGAGCGCTG 61.166 55.000 18.48 0.00 0.00 5.18
4608 5293 0.445436 GAAGACGGTGATGCAAGCTG 59.555 55.000 0.00 0.00 0.00 4.24
4627 5320 4.157840 CCCCCTAGGAAAATCAAACTTTCG 59.842 45.833 11.48 0.00 38.24 3.46
4628 5321 5.330233 TCCCCCTAGGAAAATCAAACTTTC 58.670 41.667 11.48 0.00 43.78 2.62
4629 5322 5.348259 TCCCCCTAGGAAAATCAAACTTT 57.652 39.130 11.48 0.00 43.78 2.66
4668 5361 5.411977 GCGCTAACAGGAGTAGTATATCAGA 59.588 44.000 0.00 0.00 0.00 3.27
4670 5363 5.067954 TGCGCTAACAGGAGTAGTATATCA 58.932 41.667 9.73 0.00 0.00 2.15
4671 5364 5.624344 TGCGCTAACAGGAGTAGTATATC 57.376 43.478 9.73 0.00 0.00 1.63
4677 5370 1.683917 AGGATGCGCTAACAGGAGTAG 59.316 52.381 9.73 0.00 0.00 2.57
4678 5371 1.776662 AGGATGCGCTAACAGGAGTA 58.223 50.000 9.73 0.00 0.00 2.59
4679 5372 0.905357 AAGGATGCGCTAACAGGAGT 59.095 50.000 9.73 0.00 0.00 3.85
4680 5373 2.029838 AAAGGATGCGCTAACAGGAG 57.970 50.000 9.73 0.00 0.00 3.69
4681 5374 2.290008 TGAAAAGGATGCGCTAACAGGA 60.290 45.455 9.73 0.00 0.00 3.86
4682 5375 2.083774 TGAAAAGGATGCGCTAACAGG 58.916 47.619 9.73 0.00 0.00 4.00
4754 5447 3.464494 GCCTGGGGCCTGCATTTC 61.464 66.667 0.84 0.00 44.06 2.17
4793 5487 4.796231 CTCGACCGGTGGCGGAAG 62.796 72.222 14.63 0.00 0.00 3.46
4796 5490 3.659089 ATTTCTCGACCGGTGGCGG 62.659 63.158 14.63 7.50 0.00 6.13
4797 5491 2.125673 ATTTCTCGACCGGTGGCG 60.126 61.111 14.63 11.37 0.00 5.69
4798 5492 1.814169 GGATTTCTCGACCGGTGGC 60.814 63.158 14.63 0.00 0.00 5.01
4799 5493 1.518572 CGGATTTCTCGACCGGTGG 60.519 63.158 14.63 12.47 42.48 4.61
4800 5494 4.088421 CGGATTTCTCGACCGGTG 57.912 61.111 14.63 4.45 42.48 4.94
4803 5497 2.106332 CCCCGGATTTCTCGACCG 59.894 66.667 0.73 4.52 45.24 4.79
4804 5498 2.203029 GCCCCGGATTTCTCGACC 60.203 66.667 0.73 0.00 0.00 4.79
4805 5499 2.585247 CGCCCCGGATTTCTCGAC 60.585 66.667 0.73 0.00 0.00 4.20
4806 5500 4.524318 GCGCCCCGGATTTCTCGA 62.524 66.667 0.73 0.00 0.00 4.04
4807 5501 4.830765 TGCGCCCCGGATTTCTCG 62.831 66.667 0.73 0.00 0.00 4.04
4808 5502 1.384222 ATTTGCGCCCCGGATTTCTC 61.384 55.000 0.73 0.00 0.00 2.87
4809 5503 0.970427 AATTTGCGCCCCGGATTTCT 60.970 50.000 0.73 0.00 0.00 2.52
4810 5504 1.515487 AATTTGCGCCCCGGATTTC 59.485 52.632 0.73 0.00 0.00 2.17
4811 5505 3.706855 AATTTGCGCCCCGGATTT 58.293 50.000 0.73 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.