Multiple sequence alignment - TraesCS5A01G215700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G215700 chr5A 100.000 3554 0 0 1 3554 431913979 431917532 0.000000e+00 6564.0
1 TraesCS5A01G215700 chr5A 95.576 746 32 1 118 862 673003091 673003836 0.000000e+00 1194.0
2 TraesCS5A01G215700 chr5A 87.432 366 30 7 3202 3554 431999974 432000336 1.190000e-109 407.0
3 TraesCS5A01G215700 chr5A 86.250 80 10 1 2221 2299 545848647 545848726 6.320000e-13 86.1
4 TraesCS5A01G215700 chr5A 97.778 45 1 0 2299 2343 472913055 472913011 1.060000e-10 78.7
5 TraesCS5A01G215700 chr5A 95.556 45 1 1 2297 2340 559025184 559025140 1.770000e-08 71.3
6 TraesCS5A01G215700 chr5A 95.455 44 1 1 2298 2340 673726904 673726947 6.370000e-08 69.4
7 TraesCS5A01G215700 chr7A 96.752 862 28 0 1 862 287815243 287816104 0.000000e+00 1437.0
8 TraesCS5A01G215700 chr7A 93.880 866 44 8 2 862 75877987 75877126 0.000000e+00 1297.0
9 TraesCS5A01G215700 chr7A 93.088 868 49 7 2 862 171574977 171575840 0.000000e+00 1260.0
10 TraesCS5A01G215700 chr7A 90.566 106 10 0 2725 2830 699644002 699643897 1.330000e-29 141.0
11 TraesCS5A01G215700 chr2A 96.412 864 29 1 1 862 82194198 82193335 0.000000e+00 1423.0
12 TraesCS5A01G215700 chr2A 96.404 862 31 0 1 862 699601435 699602296 0.000000e+00 1421.0
13 TraesCS5A01G215700 chr2A 90.909 77 7 0 2821 2897 705533445 705533521 1.750000e-18 104.0
14 TraesCS5A01G215700 chr5D 95.078 833 28 3 880 1705 331320176 331321002 0.000000e+00 1299.0
15 TraesCS5A01G215700 chr5D 91.349 971 50 12 1753 2700 331321014 331321973 0.000000e+00 1297.0
16 TraesCS5A01G215700 chr5D 87.173 421 25 10 3155 3554 331323041 331323453 5.410000e-123 451.0
17 TraesCS5A01G215700 chr5D 85.269 353 32 7 3202 3554 331372747 331373079 2.630000e-91 346.0
18 TraesCS5A01G215700 chrUn 93.203 868 48 7 2 862 248284400 248283537 0.000000e+00 1266.0
19 TraesCS5A01G215700 chr3A 93.088 868 49 8 2 862 701950873 701950010 0.000000e+00 1260.0
20 TraesCS5A01G215700 chr3A 91.781 73 5 1 2228 2299 589846445 589846373 2.260000e-17 100.0
21 TraesCS5A01G215700 chr3A 85.000 100 9 6 2219 2315 572746550 572746646 2.920000e-16 97.1
22 TraesCS5A01G215700 chr3A 97.619 42 1 0 2299 2340 16113943 16113902 4.920000e-09 73.1
23 TraesCS5A01G215700 chr3A 93.750 48 2 1 2297 2343 724592561 724592514 1.770000e-08 71.3
24 TraesCS5A01G215700 chr3A 93.333 45 3 0 2293 2337 587388701 587388745 2.290000e-07 67.6
25 TraesCS5A01G215700 chr6A 95.176 767 36 1 1 767 480900 481665 0.000000e+00 1210.0
26 TraesCS5A01G215700 chr6A 91.892 74 5 1 2227 2299 602984520 602984447 6.280000e-18 102.0
27 TraesCS5A01G215700 chr5B 93.029 832 41 6 880 1701 387094188 387095012 0.000000e+00 1199.0
28 TraesCS5A01G215700 chr5B 92.837 363 15 3 3202 3554 387146365 387146726 1.890000e-142 516.0
29 TraesCS5A01G215700 chr5B 90.030 331 20 6 1753 2072 387095009 387095337 1.970000e-112 416.0
30 TraesCS5A01G215700 chr5B 89.637 193 18 1 2343 2533 387095499 387095691 9.860000e-61 244.0
31 TraesCS5A01G215700 chr5B 92.086 139 8 1 3419 3554 387156279 387156417 3.620000e-45 193.0
32 TraesCS5A01G215700 chr5B 87.069 116 14 1 2716 2830 600545940 600545825 2.880000e-26 130.0
33 TraesCS5A01G215700 chr5B 91.667 84 7 0 2821 2904 289594676 289594593 2.240000e-22 117.0
34 TraesCS5A01G215700 chr5B 91.667 72 6 0 2232 2303 55484848 55484919 2.260000e-17 100.0
35 TraesCS5A01G215700 chr6D 85.517 145 18 2 2823 2966 419285647 419285505 7.950000e-32 148.0
36 TraesCS5A01G215700 chr6D 86.466 133 12 2 2702 2828 467990175 467990307 1.330000e-29 141.0
37 TraesCS5A01G215700 chr2B 87.500 128 16 0 2702 2829 676751114 676751241 7.950000e-32 148.0
38 TraesCS5A01G215700 chr2B 88.496 113 11 2 2722 2833 791445551 791445440 6.190000e-28 135.0
39 TraesCS5A01G215700 chr2B 89.873 79 6 2 2222 2299 776555285 776555362 2.260000e-17 100.0
40 TraesCS5A01G215700 chr2D 90.991 111 6 4 2722 2830 87999692 87999800 2.860000e-31 147.0
41 TraesCS5A01G215700 chr1B 90.826 109 10 0 2725 2833 44062720 44062828 2.860000e-31 147.0
42 TraesCS5A01G215700 chr3D 86.364 132 18 0 2702 2833 608605847 608605716 1.030000e-30 145.0
43 TraesCS5A01G215700 chr7D 87.611 113 12 2 2719 2830 65776480 65776591 2.880000e-26 130.0
44 TraesCS5A01G215700 chr7D 81.081 148 27 1 2821 2968 538835845 538835699 2.240000e-22 117.0
45 TraesCS5A01G215700 chr7B 94.667 75 3 1 2226 2299 28960793 28960719 8.060000e-22 115.0
46 TraesCS5A01G215700 chr7B 86.111 72 9 1 2273 2344 235448104 235448174 3.800000e-10 76.8
47 TraesCS5A01G215700 chr4A 91.139 79 5 2 2223 2299 709798760 709798682 4.850000e-19 106.0
48 TraesCS5A01G215700 chr3B 89.024 82 7 2 2219 2299 400652964 400652884 2.260000e-17 100.0
49 TraesCS5A01G215700 chr3B 88.679 53 2 4 2214 2264 466661218 466661268 1.070000e-05 62.1
50 TraesCS5A01G215700 chr3B 79.762 84 8 5 2227 2307 21951951 21951874 6.000000e-03 52.8
51 TraesCS5A01G215700 chr1A 95.349 43 2 0 2302 2344 512464967 512464925 6.370000e-08 69.4
52 TraesCS5A01G215700 chr4B 88.462 52 4 1 2917 2968 501180502 501180551 1.070000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G215700 chr5A 431913979 431917532 3553 False 6564.000000 6564 100.000000 1 3554 1 chr5A.!!$F1 3553
1 TraesCS5A01G215700 chr5A 673003091 673003836 745 False 1194.000000 1194 95.576000 118 862 1 chr5A.!!$F4 744
2 TraesCS5A01G215700 chr7A 287815243 287816104 861 False 1437.000000 1437 96.752000 1 862 1 chr7A.!!$F2 861
3 TraesCS5A01G215700 chr7A 75877126 75877987 861 True 1297.000000 1297 93.880000 2 862 1 chr7A.!!$R1 860
4 TraesCS5A01G215700 chr7A 171574977 171575840 863 False 1260.000000 1260 93.088000 2 862 1 chr7A.!!$F1 860
5 TraesCS5A01G215700 chr2A 82193335 82194198 863 True 1423.000000 1423 96.412000 1 862 1 chr2A.!!$R1 861
6 TraesCS5A01G215700 chr2A 699601435 699602296 861 False 1421.000000 1421 96.404000 1 862 1 chr2A.!!$F1 861
7 TraesCS5A01G215700 chr5D 331320176 331323453 3277 False 1015.666667 1299 91.200000 880 3554 3 chr5D.!!$F2 2674
8 TraesCS5A01G215700 chrUn 248283537 248284400 863 True 1266.000000 1266 93.203000 2 862 1 chrUn.!!$R1 860
9 TraesCS5A01G215700 chr3A 701950010 701950873 863 True 1260.000000 1260 93.088000 2 862 1 chr3A.!!$R3 860
10 TraesCS5A01G215700 chr6A 480900 481665 765 False 1210.000000 1210 95.176000 1 767 1 chr6A.!!$F1 766
11 TraesCS5A01G215700 chr5B 387094188 387095691 1503 False 619.666667 1199 90.898667 880 2533 3 chr5B.!!$F4 1653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 842 0.178995 TTGTTGGATGCTGCCTGTGA 60.179 50.0 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2705 2789 0.033504 AACGAGCGTCTGTTGGACAT 59.966 50.0 0.0 0.0 44.7 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 0.824109 TCGAGATCCGGCAAGTTCAT 59.176 50.000 0.00 0.00 39.14 2.57
376 377 3.371063 GGAGTGCCGTCCGTGAGA 61.371 66.667 0.00 0.00 0.00 3.27
495 496 1.745115 GGCGCTGTGCTGGTCATTA 60.745 57.895 13.46 0.00 45.43 1.90
568 569 7.070322 ACCCTGCTGATATTATTTTCAAATGCT 59.930 33.333 0.00 0.00 0.00 3.79
634 635 2.040464 ACCGGATGATGGAGGCCT 60.040 61.111 9.46 3.86 0.00 5.19
700 702 2.903547 GCTCGTGGCGCTTTTGGAA 61.904 57.895 7.64 0.00 0.00 3.53
703 705 1.169661 TCGTGGCGCTTTTGGAATGT 61.170 50.000 7.64 0.00 0.00 2.71
723 726 3.055963 TGTCCGCCTCGTTCCTTTAATTA 60.056 43.478 0.00 0.00 0.00 1.40
744 747 4.162040 ACCATCTTTCTTATCAGGCTGG 57.838 45.455 15.73 0.00 0.00 4.85
801 806 4.583907 ACCCCCTTTTTATTTCGTTCGAAA 59.416 37.500 19.78 19.78 38.31 3.46
832 842 0.178995 TTGTTGGATGCTGCCTGTGA 60.179 50.000 0.00 0.00 0.00 3.58
862 872 3.750639 TTAATTTAAAGCCGGACGCAG 57.249 42.857 5.05 0.00 41.38 5.18
863 873 7.889174 CTTTATTAATTTAAAGCCGGACGCAGT 60.889 37.037 5.05 0.00 41.38 4.40
918 928 1.578926 CAATCCACCAAAAGCGCGA 59.421 52.632 12.10 0.00 0.00 5.87
1339 1366 2.698763 GCCTGCAAGAAGCTGCTCC 61.699 63.158 1.00 0.00 45.94 4.70
1350 1377 1.218047 GCTGCTCCACATGGACGTA 59.782 57.895 0.00 0.00 39.78 3.57
1655 1682 2.167861 GGATCGACGGCTGCAAGAC 61.168 63.158 0.50 0.00 40.17 3.01
1678 1705 4.022416 CCATGCTGTGCAGGTAAAACTAAA 60.022 41.667 3.62 0.00 43.65 1.85
1679 1706 4.561735 TGCTGTGCAGGTAAAACTAAAC 57.438 40.909 1.11 0.00 33.32 2.01
1680 1707 4.204012 TGCTGTGCAGGTAAAACTAAACT 58.796 39.130 1.11 0.00 33.32 2.66
1681 1708 5.369833 TGCTGTGCAGGTAAAACTAAACTA 58.630 37.500 1.11 0.00 33.32 2.24
1682 1709 5.823570 TGCTGTGCAGGTAAAACTAAACTAA 59.176 36.000 1.11 0.00 33.32 2.24
1701 1728 1.787012 ACCGCGGTAACAACTTACTG 58.213 50.000 33.34 0.00 40.85 2.74
1706 1733 1.463444 CGGTAACAACTTACTGCTGGC 59.537 52.381 0.00 0.00 33.41 4.85
1707 1734 2.779506 GGTAACAACTTACTGCTGGCT 58.220 47.619 0.00 0.00 33.83 4.75
1708 1735 3.615592 CGGTAACAACTTACTGCTGGCTA 60.616 47.826 0.00 0.00 33.41 3.93
1709 1736 3.683340 GGTAACAACTTACTGCTGGCTAC 59.317 47.826 0.00 0.00 33.83 3.58
1710 1737 3.771577 AACAACTTACTGCTGGCTACT 57.228 42.857 0.00 0.00 0.00 2.57
1712 1739 2.028020 ACAACTTACTGCTGGCTACTCC 60.028 50.000 0.00 0.00 0.00 3.85
1713 1740 1.196012 ACTTACTGCTGGCTACTCCC 58.804 55.000 0.00 0.00 0.00 4.30
1714 1741 1.273324 ACTTACTGCTGGCTACTCCCT 60.273 52.381 0.00 0.00 0.00 4.20
1716 1743 0.397254 TACTGCTGGCTACTCCCTCC 60.397 60.000 0.00 0.00 0.00 4.30
1717 1744 1.687146 CTGCTGGCTACTCCCTCCA 60.687 63.158 0.00 0.00 0.00 3.86
1718 1745 1.003442 TGCTGGCTACTCCCTCCAT 59.997 57.895 0.00 0.00 0.00 3.41
1719 1746 0.264657 TGCTGGCTACTCCCTCCATA 59.735 55.000 0.00 0.00 0.00 2.74
1720 1747 0.682292 GCTGGCTACTCCCTCCATAC 59.318 60.000 0.00 0.00 0.00 2.39
1721 1748 1.343069 CTGGCTACTCCCTCCATACC 58.657 60.000 0.00 0.00 0.00 2.73
1722 1749 0.639943 TGGCTACTCCCTCCATACCA 59.360 55.000 0.00 0.00 0.00 3.25
1723 1750 1.223077 TGGCTACTCCCTCCATACCAT 59.777 52.381 0.00 0.00 0.00 3.55
1724 1751 2.453212 TGGCTACTCCCTCCATACCATA 59.547 50.000 0.00 0.00 0.00 2.74
1725 1752 3.116512 TGGCTACTCCCTCCATACCATAA 60.117 47.826 0.00 0.00 0.00 1.90
1726 1753 4.104831 GGCTACTCCCTCCATACCATAAT 58.895 47.826 0.00 0.00 0.00 1.28
1727 1754 5.222673 TGGCTACTCCCTCCATACCATAATA 60.223 44.000 0.00 0.00 0.00 0.98
1728 1755 5.905913 GGCTACTCCCTCCATACCATAATAT 59.094 44.000 0.00 0.00 0.00 1.28
1729 1756 7.073854 GGCTACTCCCTCCATACCATAATATA 58.926 42.308 0.00 0.00 0.00 0.86
1730 1757 7.567622 GGCTACTCCCTCCATACCATAATATAA 59.432 40.741 0.00 0.00 0.00 0.98
1731 1758 8.989131 GCTACTCCCTCCATACCATAATATAAA 58.011 37.037 0.00 0.00 0.00 1.40
1784 1811 4.799564 TTGACTTTCACCTGCAAGTTTT 57.200 36.364 0.00 0.00 31.92 2.43
1807 1834 7.745620 TTCTCCTCAGTTAAATCTTCAAACC 57.254 36.000 0.00 0.00 0.00 3.27
1972 1999 4.701651 TCCTGTGAACCATTGATTGTGATC 59.298 41.667 0.00 0.00 0.00 2.92
1974 2001 5.163683 CCTGTGAACCATTGATTGTGATCTC 60.164 44.000 0.00 0.00 33.28 2.75
1984 2019 4.926244 TGATTGTGATCTCTAGTCTTCGC 58.074 43.478 0.00 0.00 33.28 4.70
2001 2039 6.209589 AGTCTTCGCAGGAGCATCTATAAATA 59.790 38.462 0.00 0.00 42.27 1.40
2002 2040 6.309251 GTCTTCGCAGGAGCATCTATAAATAC 59.691 42.308 0.00 0.00 42.27 1.89
2026 2064 5.800941 CGTAGACTTGAGTTGACTAATGACC 59.199 44.000 0.00 0.00 0.00 4.02
2036 2074 6.365520 AGTTGACTAATGACCTGAAAAACCT 58.634 36.000 0.00 0.00 0.00 3.50
2121 2178 3.222173 TCCCCGGTTCCATTTCATATG 57.778 47.619 0.00 0.00 0.00 1.78
2168 2225 3.500343 AGATTCAGAACCCCAACCAAAG 58.500 45.455 0.00 0.00 0.00 2.77
2220 2280 8.988064 GTCATTACTAGTGACAATTTCTCTGA 57.012 34.615 5.39 0.00 44.13 3.27
2227 2287 9.244292 ACTAGTGACAATTTCTCTGAGTATGTA 57.756 33.333 4.32 0.00 30.53 2.29
2228 2288 9.509855 CTAGTGACAATTTCTCTGAGTATGTAC 57.490 37.037 4.32 0.00 30.53 2.90
2229 2289 8.128322 AGTGACAATTTCTCTGAGTATGTACT 57.872 34.615 4.32 0.00 39.71 2.73
2340 2400 9.205513 ACTTTTATATTAGTTTACGGAGGGAGA 57.794 33.333 0.00 0.00 0.00 3.71
2524 2586 0.551396 TGGCCTATCCTCGACTCTCA 59.449 55.000 3.32 0.00 35.26 3.27
2533 2595 2.092375 TCCTCGACTCTCAGCAAGGATA 60.092 50.000 0.00 0.00 0.00 2.59
2534 2596 2.293122 CCTCGACTCTCAGCAAGGATAG 59.707 54.545 0.00 0.00 0.00 2.08
2535 2597 1.678627 TCGACTCTCAGCAAGGATAGC 59.321 52.381 0.00 0.00 0.00 2.97
2536 2598 1.680735 CGACTCTCAGCAAGGATAGCT 59.319 52.381 0.00 0.00 44.62 3.32
2537 2599 2.287547 CGACTCTCAGCAAGGATAGCTC 60.288 54.545 0.00 0.00 41.14 4.09
2538 2600 1.680735 ACTCTCAGCAAGGATAGCTCG 59.319 52.381 0.00 0.00 41.14 5.03
2541 2618 1.137872 CTCAGCAAGGATAGCTCGGTT 59.862 52.381 0.00 0.00 41.14 4.44
2544 2621 1.765314 AGCAAGGATAGCTCGGTTGAT 59.235 47.619 0.00 0.00 38.01 2.57
2566 2643 4.951254 TGGTTGTTGAACTGATCGAGTTA 58.049 39.130 9.57 0.00 45.48 2.24
2567 2644 4.988540 TGGTTGTTGAACTGATCGAGTTAG 59.011 41.667 9.57 0.00 45.48 2.34
2568 2645 4.143094 GGTTGTTGAACTGATCGAGTTAGC 60.143 45.833 9.57 2.59 45.48 3.09
2610 2693 2.038557 GGAAGCCAAACAGAGGACTACA 59.961 50.000 0.00 0.00 0.00 2.74
2651 2735 3.140144 TGTTTCCCCTTCCATTCTCTTGT 59.860 43.478 0.00 0.00 0.00 3.16
2659 2743 6.409695 CCCCTTCCATTCTCTTGTATGTATGT 60.410 42.308 0.00 0.00 0.00 2.29
2684 2768 1.667212 TCTATTGTGCTTCATGCTGCG 59.333 47.619 0.00 0.00 43.37 5.18
2700 2784 2.287188 GCTGCGGTGGATTGTGATATTG 60.287 50.000 0.00 0.00 0.00 1.90
2701 2785 2.291465 CTGCGGTGGATTGTGATATTGG 59.709 50.000 0.00 0.00 0.00 3.16
2702 2786 2.092699 TGCGGTGGATTGTGATATTGGA 60.093 45.455 0.00 0.00 0.00 3.53
2703 2787 2.549754 GCGGTGGATTGTGATATTGGAG 59.450 50.000 0.00 0.00 0.00 3.86
2704 2788 2.549754 CGGTGGATTGTGATATTGGAGC 59.450 50.000 0.00 0.00 0.00 4.70
2705 2789 3.554934 GGTGGATTGTGATATTGGAGCA 58.445 45.455 0.00 0.00 0.00 4.26
2706 2790 4.147321 GGTGGATTGTGATATTGGAGCAT 58.853 43.478 0.00 0.00 0.00 3.79
2707 2791 4.022589 GGTGGATTGTGATATTGGAGCATG 60.023 45.833 0.00 0.00 0.00 4.06
2708 2792 4.581824 GTGGATTGTGATATTGGAGCATGT 59.418 41.667 0.00 0.00 0.00 3.21
2724 2808 4.338327 GTCCAACAGACGCTCGTT 57.662 55.556 0.00 0.00 35.30 3.85
2725 2809 3.484524 GTCCAACAGACGCTCGTTA 57.515 52.632 0.00 0.00 35.30 3.18
2759 2974 8.568732 TTGTAGTGCTTAAATAGTGTTTTTGC 57.431 30.769 0.00 0.00 0.00 3.68
2760 2975 6.853872 TGTAGTGCTTAAATAGTGTTTTTGCG 59.146 34.615 0.00 0.00 0.00 4.85
2761 2976 4.679654 AGTGCTTAAATAGTGTTTTTGCGC 59.320 37.500 0.00 0.00 32.54 6.09
2763 2978 3.479707 GCTTAAATAGTGTTTTTGCGCGC 60.480 43.478 27.26 27.26 0.00 6.86
2764 2979 1.049251 AAATAGTGTTTTTGCGCGCG 58.951 45.000 28.44 28.44 0.00 6.86
2766 2981 2.521733 ATAGTGTTTTTGCGCGCGGG 62.522 55.000 33.06 20.05 0.00 6.13
2767 2982 4.615834 GTGTTTTTGCGCGCGGGA 62.616 61.111 33.06 12.38 0.00 5.14
2768 2983 4.320928 TGTTTTTGCGCGCGGGAG 62.321 61.111 33.06 3.25 0.00 4.30
2773 2988 4.683721 TTGCGCGCGGGAGGTTTA 62.684 61.111 33.06 1.38 0.00 2.01
2776 2991 4.745751 CGCGCGGGAGGTTTACCA 62.746 66.667 24.84 0.00 38.89 3.25
2778 2993 2.975536 CGCGGGAGGTTTACCAGA 59.024 61.111 0.00 0.00 38.89 3.86
2780 2995 0.810031 CGCGGGAGGTTTACCAGATG 60.810 60.000 0.00 0.00 38.89 2.90
2781 2996 1.095807 GCGGGAGGTTTACCAGATGC 61.096 60.000 1.13 0.00 38.89 3.91
2782 2997 0.251916 CGGGAGGTTTACCAGATGCA 59.748 55.000 1.13 0.00 38.89 3.96
2784 2999 1.004277 GGGAGGTTTACCAGATGCACA 59.996 52.381 1.13 0.00 38.89 4.57
2785 3000 2.554344 GGGAGGTTTACCAGATGCACAA 60.554 50.000 1.13 0.00 38.89 3.33
2786 3001 3.153919 GGAGGTTTACCAGATGCACAAA 58.846 45.455 1.13 0.00 38.89 2.83
2789 3004 4.944048 AGGTTTACCAGATGCACAAAAAC 58.056 39.130 1.13 0.00 38.89 2.43
2791 3006 4.506288 GGTTTACCAGATGCACAAAAACAC 59.494 41.667 0.00 0.00 35.64 3.32
2794 3009 1.066908 CCAGATGCACAAAAACACGGT 59.933 47.619 0.00 0.00 0.00 4.83
2797 3012 2.292292 AGATGCACAAAAACACGGTACC 59.708 45.455 0.16 0.16 0.00 3.34
2798 3013 0.739561 TGCACAAAAACACGGTACCC 59.260 50.000 6.25 0.00 0.00 3.69
2800 3015 1.134560 GCACAAAAACACGGTACCCAA 59.865 47.619 6.25 0.00 0.00 4.12
2801 3016 2.799871 CACAAAAACACGGTACCCAAC 58.200 47.619 6.25 0.00 0.00 3.77
2802 3017 1.750206 ACAAAAACACGGTACCCAACC 59.250 47.619 6.25 0.00 45.77 3.77
2804 3019 0.818852 AAAACACGGTACCCAACCCG 60.819 55.000 6.25 0.00 46.62 5.28
2838 3053 3.718097 CAGCCCGCGTGCGTTAAA 61.718 61.111 8.18 0.00 37.81 1.52
2840 3055 2.177284 GCCCGCGTGCGTTAAATT 59.823 55.556 13.70 0.00 37.81 1.82
2842 3057 0.179194 GCCCGCGTGCGTTAAATTTA 60.179 50.000 13.70 0.00 37.81 1.40
2843 3058 1.526646 CCCGCGTGCGTTAAATTTAC 58.473 50.000 13.70 0.00 37.81 2.01
2844 3059 1.136029 CCCGCGTGCGTTAAATTTACA 60.136 47.619 13.70 0.00 37.81 2.41
2845 3060 2.572243 CCGCGTGCGTTAAATTTACAA 58.428 42.857 13.70 0.00 37.81 2.41
2846 3061 2.336189 CCGCGTGCGTTAAATTTACAAC 59.664 45.455 13.70 0.00 37.81 3.32
2852 3154 5.393163 CGTGCGTTAAATTTACAACTTCGTT 59.607 36.000 0.00 0.00 0.00 3.85
2858 3160 9.386995 CGTTAAATTTACAACTTCGTTTTTGTG 57.613 29.630 0.00 0.00 36.61 3.33
2863 3165 2.602660 ACAACTTCGTTTTTGTGCATGC 59.397 40.909 11.82 11.82 34.61 4.06
2864 3166 2.859538 CAACTTCGTTTTTGTGCATGCT 59.140 40.909 20.33 0.00 0.00 3.79
2866 3168 3.520569 ACTTCGTTTTTGTGCATGCTTT 58.479 36.364 20.33 0.00 0.00 3.51
2869 3171 5.752955 ACTTCGTTTTTGTGCATGCTTTATT 59.247 32.000 20.33 0.00 0.00 1.40
2870 3172 6.257630 ACTTCGTTTTTGTGCATGCTTTATTT 59.742 30.769 20.33 0.00 0.00 1.40
2871 3173 6.595772 TCGTTTTTGTGCATGCTTTATTTT 57.404 29.167 20.33 0.00 0.00 1.82
2872 3174 7.700322 TCGTTTTTGTGCATGCTTTATTTTA 57.300 28.000 20.33 0.00 0.00 1.52
2873 3175 7.559845 TCGTTTTTGTGCATGCTTTATTTTAC 58.440 30.769 20.33 6.41 0.00 2.01
2874 3176 7.222805 TCGTTTTTGTGCATGCTTTATTTTACA 59.777 29.630 20.33 9.20 0.00 2.41
2875 3177 7.526850 CGTTTTTGTGCATGCTTTATTTTACAG 59.473 33.333 20.33 0.00 0.00 2.74
2876 3178 6.464895 TTTGTGCATGCTTTATTTTACAGC 57.535 33.333 20.33 0.00 0.00 4.40
2877 3179 5.389859 TGTGCATGCTTTATTTTACAGCT 57.610 34.783 20.33 0.00 34.42 4.24
2879 3181 5.863397 TGTGCATGCTTTATTTTACAGCTTC 59.137 36.000 20.33 0.00 34.42 3.86
2880 3182 6.095377 GTGCATGCTTTATTTTACAGCTTCT 58.905 36.000 20.33 0.00 34.42 2.85
2881 3183 6.034256 GTGCATGCTTTATTTTACAGCTTCTG 59.966 38.462 20.33 0.00 37.52 3.02
2882 3184 5.005107 GCATGCTTTATTTTACAGCTTCTGC 59.995 40.000 11.37 0.00 34.37 4.26
2893 3195 1.963338 GCTTCTGCTGGAGCGTTGT 60.963 57.895 8.26 0.00 45.83 3.32
2894 3196 1.510480 GCTTCTGCTGGAGCGTTGTT 61.510 55.000 8.26 0.00 45.83 2.83
2895 3197 0.947244 CTTCTGCTGGAGCGTTGTTT 59.053 50.000 0.00 0.00 45.83 2.83
2896 3198 1.334869 CTTCTGCTGGAGCGTTGTTTT 59.665 47.619 0.00 0.00 45.83 2.43
2897 3199 0.944386 TCTGCTGGAGCGTTGTTTTC 59.056 50.000 0.00 0.00 45.83 2.29
2902 3208 2.127383 GAGCGTTGTTTTCGGGCG 60.127 61.111 0.00 0.00 0.00 6.13
2904 3210 4.615834 GCGTTGTTTTCGGGCGCA 62.616 61.111 10.83 0.00 46.23 6.09
2917 3223 3.037833 GCGCAGGCACCAAAAAGC 61.038 61.111 0.30 0.00 39.62 3.51
2919 3225 1.067916 CGCAGGCACCAAAAAGCTT 59.932 52.632 0.00 0.00 0.00 3.74
2922 3228 1.743431 GCAGGCACCAAAAAGCTTTGT 60.743 47.619 13.54 3.68 40.38 2.83
2923 3229 2.631267 CAGGCACCAAAAAGCTTTGTT 58.369 42.857 13.54 6.63 40.38 2.83
2940 3246 3.768632 TTTTTGCGCGCACGTTTT 58.231 44.444 36.72 0.00 42.83 2.43
2941 3247 2.939782 TTTTTGCGCGCACGTTTTA 58.060 42.105 36.72 16.29 42.83 1.52
2942 3248 1.478137 TTTTTGCGCGCACGTTTTAT 58.522 40.000 36.72 0.00 42.83 1.40
2944 3250 1.478137 TTTGCGCGCACGTTTTATTT 58.522 40.000 36.72 0.00 42.83 1.40
2945 3251 0.772926 TTGCGCGCACGTTTTATTTG 59.227 45.000 36.72 0.00 42.83 2.32
2948 3254 0.621465 CGCGCACGTTTTATTTGACG 59.379 50.000 8.75 0.00 44.34 4.35
2949 3255 0.357567 GCGCACGTTTTATTTGACGC 59.642 50.000 0.30 0.00 42.67 5.19
2950 3256 0.621465 CGCACGTTTTATTTGACGCG 59.379 50.000 3.53 3.53 42.67 6.01
2951 3257 1.665766 GCACGTTTTATTTGACGCGT 58.334 45.000 13.85 13.85 42.67 6.01
2952 3258 1.635660 GCACGTTTTATTTGACGCGTC 59.364 47.619 31.66 31.66 42.67 5.19
2953 3259 2.660900 GCACGTTTTATTTGACGCGTCT 60.661 45.455 36.27 21.26 42.67 4.18
2954 3260 2.894000 CACGTTTTATTTGACGCGTCTG 59.106 45.455 36.27 19.95 42.67 3.51
2956 3262 3.001533 ACGTTTTATTTGACGCGTCTGTT 59.998 39.130 36.27 23.12 42.67 3.16
2957 3263 3.353767 CGTTTTATTTGACGCGTCTGTTG 59.646 43.478 36.27 14.65 32.11 3.33
2958 3264 3.529634 TTTATTTGACGCGTCTGTTGG 57.470 42.857 36.27 0.00 0.00 3.77
2959 3265 2.442212 TATTTGACGCGTCTGTTGGA 57.558 45.000 36.27 15.50 0.00 3.53
2960 3266 1.148310 ATTTGACGCGTCTGTTGGAG 58.852 50.000 36.27 0.00 0.00 3.86
2961 3267 0.103390 TTTGACGCGTCTGTTGGAGA 59.897 50.000 36.27 13.97 0.00 3.71
2963 3269 0.388520 TGACGCGTCTGTTGGAGATG 60.389 55.000 36.27 0.00 40.33 2.90
2971 3277 3.499918 CGTCTGTTGGAGATGCTCTTTTT 59.500 43.478 0.00 0.00 30.78 1.94
2972 3278 4.612259 CGTCTGTTGGAGATGCTCTTTTTG 60.612 45.833 0.00 0.00 30.78 2.44
2973 3279 3.822735 TCTGTTGGAGATGCTCTTTTTGG 59.177 43.478 0.00 0.00 0.00 3.28
2974 3280 2.297033 TGTTGGAGATGCTCTTTTTGGC 59.703 45.455 0.00 0.00 0.00 4.52
2975 3281 2.291209 TGGAGATGCTCTTTTTGGCA 57.709 45.000 0.00 0.00 42.80 4.92
2976 3282 2.596346 TGGAGATGCTCTTTTTGGCAA 58.404 42.857 0.00 0.00 41.90 4.52
2977 3283 2.297033 TGGAGATGCTCTTTTTGGCAAC 59.703 45.455 0.00 0.00 41.90 4.17
2978 3284 2.560105 GGAGATGCTCTTTTTGGCAACT 59.440 45.455 0.00 0.00 42.62 3.16
2979 3285 3.006217 GGAGATGCTCTTTTTGGCAACTT 59.994 43.478 0.00 0.00 40.64 2.66
2980 3286 4.233005 GAGATGCTCTTTTTGGCAACTTC 58.767 43.478 0.00 0.00 40.64 3.01
2981 3287 2.888834 TGCTCTTTTTGGCAACTTCC 57.111 45.000 0.00 0.00 35.40 3.46
2982 3288 2.106566 TGCTCTTTTTGGCAACTTCCA 58.893 42.857 0.00 0.00 35.40 3.53
2983 3289 2.101249 TGCTCTTTTTGGCAACTTCCAG 59.899 45.455 0.00 0.00 37.44 3.86
2984 3290 2.362077 GCTCTTTTTGGCAACTTCCAGA 59.638 45.455 0.00 0.00 37.44 3.86
2985 3291 3.551659 GCTCTTTTTGGCAACTTCCAGAG 60.552 47.826 0.00 7.58 37.44 3.35
2986 3292 3.885297 CTCTTTTTGGCAACTTCCAGAGA 59.115 43.478 0.00 0.00 37.44 3.10
2990 3764 1.361204 TGGCAACTTCCAGAGATGGA 58.639 50.000 0.00 0.00 35.93 3.41
3001 3775 5.503634 TCCAGAGATGGAAAAGATGAACA 57.496 39.130 0.00 0.00 34.56 3.18
3002 3776 5.248640 TCCAGAGATGGAAAAGATGAACAC 58.751 41.667 0.00 0.00 34.56 3.32
3003 3777 5.013495 TCCAGAGATGGAAAAGATGAACACT 59.987 40.000 0.00 0.00 34.56 3.55
3005 3779 6.208204 CCAGAGATGGAAAAGATGAACACTTT 59.792 38.462 0.00 0.00 38.91 2.66
3006 3780 7.303998 CAGAGATGGAAAAGATGAACACTTTC 58.696 38.462 0.00 0.00 36.71 2.62
3008 3782 4.829064 TGGAAAAGATGAACACTTTCCG 57.171 40.909 14.43 0.00 36.71 4.30
3009 3783 3.568007 TGGAAAAGATGAACACTTTCCGG 59.432 43.478 0.00 0.00 36.71 5.14
3011 3785 2.270352 AAGATGAACACTTTCCGGCA 57.730 45.000 0.00 0.00 0.00 5.69
3012 3786 2.270352 AGATGAACACTTTCCGGCAA 57.730 45.000 0.00 0.00 0.00 4.52
3013 3787 2.154462 AGATGAACACTTTCCGGCAAG 58.846 47.619 12.62 12.62 0.00 4.01
3014 3788 2.151202 GATGAACACTTTCCGGCAAGA 58.849 47.619 21.15 0.00 0.00 3.02
3015 3789 2.045561 TGAACACTTTCCGGCAAGAA 57.954 45.000 21.15 0.00 0.00 2.52
3016 3790 2.370349 TGAACACTTTCCGGCAAGAAA 58.630 42.857 21.15 3.23 34.64 2.52
3017 3791 2.755655 TGAACACTTTCCGGCAAGAAAA 59.244 40.909 21.15 2.83 35.41 2.29
3018 3792 3.193691 TGAACACTTTCCGGCAAGAAAAA 59.806 39.130 21.15 2.05 35.41 1.94
3057 3831 9.994432 AAAAAGAATAGAAAGATGAATACTGCG 57.006 29.630 0.00 0.00 0.00 5.18
3058 3832 7.721286 AAGAATAGAAAGATGAATACTGCGG 57.279 36.000 0.00 0.00 0.00 5.69
3059 3833 6.821388 AGAATAGAAAGATGAATACTGCGGT 58.179 36.000 2.42 2.42 0.00 5.68
3060 3834 7.952671 AGAATAGAAAGATGAATACTGCGGTA 58.047 34.615 8.08 8.08 0.00 4.02
3061 3835 8.589338 AGAATAGAAAGATGAATACTGCGGTAT 58.411 33.333 12.62 12.62 40.03 2.73
3062 3836 8.539770 AATAGAAAGATGAATACTGCGGTATG 57.460 34.615 18.87 0.00 38.50 2.39
3063 3837 5.300752 AGAAAGATGAATACTGCGGTATGG 58.699 41.667 18.87 0.00 38.50 2.74
3065 3839 2.368548 AGATGAATACTGCGGTATGGCA 59.631 45.455 18.87 18.63 38.50 4.92
3066 3840 2.928801 TGAATACTGCGGTATGGCAT 57.071 45.000 18.87 4.88 42.99 4.40
3067 3841 3.207265 TGAATACTGCGGTATGGCATT 57.793 42.857 18.87 4.61 42.99 3.56
3068 3842 3.138304 TGAATACTGCGGTATGGCATTC 58.862 45.455 18.87 13.90 42.99 2.67
3069 3843 2.185004 ATACTGCGGTATGGCATTCC 57.815 50.000 17.52 12.73 42.99 3.01
3071 3845 1.898574 CTGCGGTATGGCATTCCCC 60.899 63.158 16.41 8.99 42.99 4.81
3072 3846 2.597510 GCGGTATGGCATTCCCCC 60.598 66.667 16.41 5.33 0.00 5.40
3073 3847 2.923035 CGGTATGGCATTCCCCCA 59.077 61.111 16.41 0.00 36.66 4.96
3074 3848 1.528309 CGGTATGGCATTCCCCCAC 60.528 63.158 16.41 2.58 34.68 4.61
3075 3849 1.930520 GGTATGGCATTCCCCCACT 59.069 57.895 11.79 0.00 34.68 4.00
3076 3850 0.468029 GGTATGGCATTCCCCCACTG 60.468 60.000 11.79 0.00 34.68 3.66
3077 3851 0.468029 GTATGGCATTCCCCCACTGG 60.468 60.000 4.78 0.00 34.68 4.00
3078 3852 0.625980 TATGGCATTCCCCCACTGGA 60.626 55.000 4.78 0.00 34.68 3.86
3080 3854 1.682344 GGCATTCCCCCACTGGAAC 60.682 63.158 0.00 0.00 46.76 3.62
3081 3855 1.384191 GCATTCCCCCACTGGAACT 59.616 57.895 0.00 0.00 46.76 3.01
3082 3856 0.967380 GCATTCCCCCACTGGAACTG 60.967 60.000 0.00 0.00 46.76 3.16
3083 3857 0.323725 CATTCCCCCACTGGAACTGG 60.324 60.000 0.00 0.00 46.76 4.00
3084 3858 0.776080 ATTCCCCCACTGGAACTGGT 60.776 55.000 0.00 0.00 46.76 4.00
3085 3859 0.996762 TTCCCCCACTGGAACTGGTT 60.997 55.000 0.00 0.00 39.48 3.67
3086 3860 0.996762 TCCCCCACTGGAACTGGTTT 60.997 55.000 0.00 0.00 35.39 3.27
3087 3861 0.105709 CCCCCACTGGAACTGGTTTT 60.106 55.000 0.00 0.00 35.39 2.43
3088 3862 1.691163 CCCCCACTGGAACTGGTTTTT 60.691 52.381 0.00 0.00 35.39 1.94
3108 3882 2.757894 TTTTAGCAAACCCCACTGGA 57.242 45.000 0.00 0.00 38.00 3.86
3109 3883 2.286365 TTTAGCAAACCCCACTGGAG 57.714 50.000 0.00 0.00 38.00 3.86
3110 3884 0.251165 TTAGCAAACCCCACTGGAGC 60.251 55.000 0.00 0.00 38.00 4.70
3111 3885 1.422977 TAGCAAACCCCACTGGAGCA 61.423 55.000 0.00 0.00 38.00 4.26
3112 3886 2.270986 GCAAACCCCACTGGAGCAG 61.271 63.158 0.00 0.00 38.00 4.24
3113 3887 1.151450 CAAACCCCACTGGAGCAGT 59.849 57.895 0.00 0.00 46.51 4.40
3114 3888 0.468029 CAAACCCCACTGGAGCAGTT 60.468 55.000 0.00 0.00 42.59 3.16
3115 3889 0.261696 AAACCCCACTGGAGCAGTTT 59.738 50.000 0.00 0.00 42.59 2.66
3116 3890 0.261696 AACCCCACTGGAGCAGTTTT 59.738 50.000 0.00 0.00 42.59 2.43
3117 3891 0.261696 ACCCCACTGGAGCAGTTTTT 59.738 50.000 0.00 0.00 42.59 1.94
3118 3892 0.675633 CCCCACTGGAGCAGTTTTTG 59.324 55.000 0.00 0.00 42.59 2.44
3119 3893 1.402787 CCCACTGGAGCAGTTTTTGT 58.597 50.000 0.00 0.00 42.59 2.83
3120 3894 1.756538 CCCACTGGAGCAGTTTTTGTT 59.243 47.619 0.00 0.00 42.59 2.83
3121 3895 2.168313 CCCACTGGAGCAGTTTTTGTTT 59.832 45.455 0.00 0.00 42.59 2.83
3122 3896 3.369366 CCCACTGGAGCAGTTTTTGTTTT 60.369 43.478 0.00 0.00 42.59 2.43
3123 3897 3.618150 CCACTGGAGCAGTTTTTGTTTTG 59.382 43.478 0.00 0.00 42.59 2.44
3124 3898 4.493547 CACTGGAGCAGTTTTTGTTTTGA 58.506 39.130 0.00 0.00 42.59 2.69
3125 3899 4.563976 CACTGGAGCAGTTTTTGTTTTGAG 59.436 41.667 0.00 0.00 42.59 3.02
3126 3900 4.114794 CTGGAGCAGTTTTTGTTTTGAGG 58.885 43.478 0.00 0.00 0.00 3.86
3127 3901 3.118811 TGGAGCAGTTTTTGTTTTGAGGG 60.119 43.478 0.00 0.00 0.00 4.30
3128 3902 3.457234 GAGCAGTTTTTGTTTTGAGGGG 58.543 45.455 0.00 0.00 0.00 4.79
3129 3903 2.837591 AGCAGTTTTTGTTTTGAGGGGT 59.162 40.909 0.00 0.00 0.00 4.95
3130 3904 3.118775 AGCAGTTTTTGTTTTGAGGGGTC 60.119 43.478 0.00 0.00 0.00 4.46
3131 3905 3.792401 CAGTTTTTGTTTTGAGGGGTCC 58.208 45.455 0.00 0.00 0.00 4.46
3132 3906 2.769663 AGTTTTTGTTTTGAGGGGTCCC 59.230 45.455 0.00 0.00 0.00 4.46
3133 3907 2.502130 GTTTTTGTTTTGAGGGGTCCCA 59.498 45.455 10.98 0.00 38.92 4.37
3134 3908 1.783071 TTTGTTTTGAGGGGTCCCAC 58.217 50.000 10.98 3.71 38.92 4.61
3135 3909 0.930726 TTGTTTTGAGGGGTCCCACT 59.069 50.000 10.98 4.26 38.92 4.00
3136 3910 0.184933 TGTTTTGAGGGGTCCCACTG 59.815 55.000 10.98 0.00 38.92 3.66
3137 3911 0.539669 GTTTTGAGGGGTCCCACTGG 60.540 60.000 10.98 0.00 38.92 4.00
3138 3912 0.699577 TTTTGAGGGGTCCCACTGGA 60.700 55.000 10.98 0.00 38.75 3.86
3139 3913 0.699577 TTTGAGGGGTCCCACTGGAA 60.700 55.000 10.98 0.00 44.07 3.53
3153 3927 3.419793 TGGAACAGGTGCAGAAAGG 57.580 52.632 0.00 0.00 0.00 3.11
3178 3952 1.280457 AGTTCATCTTCTCGGGCCTT 58.720 50.000 0.84 0.00 0.00 4.35
3181 3955 0.541863 TCATCTTCTCGGGCCTTTCC 59.458 55.000 0.84 0.00 0.00 3.13
3182 3956 0.253044 CATCTTCTCGGGCCTTTCCA 59.747 55.000 0.84 0.00 36.21 3.53
3213 3999 8.692110 TTTGCTGATTTATCTACAAGCAAATG 57.308 30.769 17.16 0.00 43.20 2.32
3249 4035 1.575244 GCCTTTCGGGAATACGTACC 58.425 55.000 0.00 0.00 37.23 3.34
3264 4050 1.142314 TACCGGAGCAATACGCCAC 59.858 57.895 9.46 0.00 44.04 5.01
3265 4051 2.616786 TACCGGAGCAATACGCCACG 62.617 60.000 9.46 0.00 44.04 4.94
3379 4179 3.821306 CCCCCAAACCCTACATAGC 57.179 57.895 0.00 0.00 0.00 2.97
3380 4180 0.185175 CCCCCAAACCCTACATAGCC 59.815 60.000 0.00 0.00 0.00 3.93
3381 4181 0.185175 CCCCAAACCCTACATAGCCC 59.815 60.000 0.00 0.00 0.00 5.19
3382 4182 0.179029 CCCAAACCCTACATAGCCCG 60.179 60.000 0.00 0.00 0.00 6.13
3383 4183 0.179029 CCAAACCCTACATAGCCCGG 60.179 60.000 0.00 0.00 0.00 5.73
3384 4184 0.818040 CAAACCCTACATAGCCCGGC 60.818 60.000 0.00 0.00 0.00 6.13
3385 4185 0.986550 AAACCCTACATAGCCCGGCT 60.987 55.000 18.05 18.05 43.41 5.52
3386 4186 0.986550 AACCCTACATAGCCCGGCTT 60.987 55.000 19.35 1.61 40.44 4.35
3387 4187 0.105349 ACCCTACATAGCCCGGCTTA 60.105 55.000 19.35 2.93 40.44 3.09
3388 4188 0.320697 CCCTACATAGCCCGGCTTAC 59.679 60.000 19.35 0.00 40.44 2.34
3389 4189 0.320697 CCTACATAGCCCGGCTTACC 59.679 60.000 19.35 0.00 40.44 2.85
3467 4267 1.080093 CGTCCGAGCCTGCTGTTTA 60.080 57.895 0.00 0.00 0.00 2.01
3478 4278 0.669318 TGCTGTTTAGGAAGGTCGCG 60.669 55.000 0.00 0.00 0.00 5.87
3508 4308 2.031191 GCACGTTTGAAGAAGAAACCGA 59.969 45.455 0.00 0.00 30.83 4.69
3530 4330 2.029844 GCACTCAGGTCAGTTCGCC 61.030 63.158 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 4.319911 GCTTGTTGTAAAGCGATTGTACCA 60.320 41.667 0.00 0.00 42.86 3.25
274 275 0.392998 GCACATGACCCATCCGAAGT 60.393 55.000 0.00 0.00 0.00 3.01
376 377 2.663826 TTCCAGTTTTGCGCAAAAGT 57.336 40.000 40.26 38.96 42.76 2.66
495 496 5.605488 AGTTATCTTATTACGGGTGGTCCAT 59.395 40.000 0.00 0.00 34.36 3.41
700 702 0.899720 TAAAGGAACGAGGCGGACAT 59.100 50.000 0.00 0.00 0.00 3.06
703 705 2.773993 AATTAAAGGAACGAGGCGGA 57.226 45.000 0.00 0.00 0.00 5.54
723 726 3.117738 CCCAGCCTGATAAGAAAGATGGT 60.118 47.826 0.00 0.00 0.00 3.55
744 747 2.807622 GGAACATGCAATCGGCCC 59.192 61.111 0.00 0.00 43.89 5.80
801 806 5.048224 CAGCATCCAACAAAGAAACAGAGAT 60.048 40.000 0.00 0.00 0.00 2.75
869 879 5.810095 AGAATCGGAGGAGAGAACATTTTT 58.190 37.500 0.00 0.00 0.00 1.94
870 880 5.428184 AGAATCGGAGGAGAGAACATTTT 57.572 39.130 0.00 0.00 0.00 1.82
871 881 5.428184 AAGAATCGGAGGAGAGAACATTT 57.572 39.130 0.00 0.00 0.00 2.32
872 882 5.659079 AGTAAGAATCGGAGGAGAGAACATT 59.341 40.000 0.00 0.00 0.00 2.71
873 883 5.205056 AGTAAGAATCGGAGGAGAGAACAT 58.795 41.667 0.00 0.00 0.00 2.71
874 884 4.601084 AGTAAGAATCGGAGGAGAGAACA 58.399 43.478 0.00 0.00 0.00 3.18
875 885 4.260866 CGAGTAAGAATCGGAGGAGAGAAC 60.261 50.000 0.00 0.00 36.54 3.01
876 886 3.878103 CGAGTAAGAATCGGAGGAGAGAA 59.122 47.826 0.00 0.00 36.54 2.87
877 887 3.468770 CGAGTAAGAATCGGAGGAGAGA 58.531 50.000 0.00 0.00 36.54 3.10
878 888 2.031508 GCGAGTAAGAATCGGAGGAGAG 60.032 54.545 0.00 0.00 40.50 3.20
918 928 1.000394 GCAATTTTTGTACGTGGGGCT 60.000 47.619 0.00 0.00 0.00 5.19
924 934 1.865970 TCGGTCGCAATTTTTGTACGT 59.134 42.857 0.00 0.00 0.00 3.57
930 940 0.111001 CGTCGTCGGTCGCAATTTTT 60.111 50.000 0.00 0.00 39.67 1.94
1016 1043 2.752238 CCTGGACGTCGAGCTCCT 60.752 66.667 20.91 0.00 0.00 3.69
1323 1350 0.887836 TGTGGAGCAGCTTCTTGCAG 60.888 55.000 1.29 0.00 46.47 4.41
1647 1674 1.211969 GCACAGCATGGTCTTGCAG 59.788 57.895 18.75 5.83 45.23 4.41
1655 1682 1.888512 AGTTTTACCTGCACAGCATGG 59.111 47.619 0.00 0.00 43.62 3.66
1678 1705 2.531522 AAGTTGTTACCGCGGTTAGT 57.468 45.000 38.94 18.79 0.00 2.24
1679 1706 3.365820 CAGTAAGTTGTTACCGCGGTTAG 59.634 47.826 38.94 7.47 39.65 2.34
1680 1707 3.316283 CAGTAAGTTGTTACCGCGGTTA 58.684 45.455 38.94 26.77 39.65 2.85
1681 1708 2.137523 CAGTAAGTTGTTACCGCGGTT 58.862 47.619 38.94 19.49 39.65 4.44
1682 1709 1.787012 CAGTAAGTTGTTACCGCGGT 58.213 50.000 36.01 36.01 39.65 5.68
1701 1728 0.682292 GTATGGAGGGAGTAGCCAGC 59.318 60.000 0.00 0.00 38.95 4.85
1705 1732 8.548880 TTATATTATGGTATGGAGGGAGTAGC 57.451 38.462 0.00 0.00 0.00 3.58
1728 1755 9.493206 GTACTCGTTCTGTCAAAAATGTTTTTA 57.507 29.630 3.39 0.00 38.23 1.52
1729 1756 8.241367 AGTACTCGTTCTGTCAAAAATGTTTTT 58.759 29.630 0.00 0.00 40.75 1.94
1730 1757 7.758495 AGTACTCGTTCTGTCAAAAATGTTTT 58.242 30.769 0.00 0.00 0.00 2.43
1731 1758 7.316544 AGTACTCGTTCTGTCAAAAATGTTT 57.683 32.000 0.00 0.00 0.00 2.83
1732 1759 6.920569 AGTACTCGTTCTGTCAAAAATGTT 57.079 33.333 0.00 0.00 0.00 2.71
1733 1760 6.761714 AGAAGTACTCGTTCTGTCAAAAATGT 59.238 34.615 0.00 0.00 32.86 2.71
1734 1761 7.178712 AGAAGTACTCGTTCTGTCAAAAATG 57.821 36.000 0.00 0.00 32.86 2.32
1735 1762 7.787725 AAGAAGTACTCGTTCTGTCAAAAAT 57.212 32.000 0.00 0.00 34.40 1.82
1736 1763 8.706492 TTAAGAAGTACTCGTTCTGTCAAAAA 57.294 30.769 0.00 0.00 34.40 1.94
1737 1764 8.706492 TTTAAGAAGTACTCGTTCTGTCAAAA 57.294 30.769 0.00 0.00 34.40 2.44
1738 1765 8.882415 ATTTAAGAAGTACTCGTTCTGTCAAA 57.118 30.769 0.00 0.00 34.40 2.69
1739 1766 8.761497 CAATTTAAGAAGTACTCGTTCTGTCAA 58.239 33.333 0.00 0.00 34.40 3.18
1740 1767 8.139350 TCAATTTAAGAAGTACTCGTTCTGTCA 58.861 33.333 0.00 0.00 34.40 3.58
1741 1768 8.426251 GTCAATTTAAGAAGTACTCGTTCTGTC 58.574 37.037 0.00 0.00 34.40 3.51
1742 1769 8.142551 AGTCAATTTAAGAAGTACTCGTTCTGT 58.857 33.333 0.00 0.00 34.40 3.41
1743 1770 8.522178 AGTCAATTTAAGAAGTACTCGTTCTG 57.478 34.615 0.00 0.00 34.40 3.02
1744 1771 9.543783 AAAGTCAATTTAAGAAGTACTCGTTCT 57.456 29.630 0.00 0.00 35.71 3.01
1745 1772 9.794653 GAAAGTCAATTTAAGAAGTACTCGTTC 57.205 33.333 0.00 0.00 0.00 3.95
1746 1773 9.321562 TGAAAGTCAATTTAAGAAGTACTCGTT 57.678 29.630 0.00 0.00 0.00 3.85
1747 1774 8.762426 GTGAAAGTCAATTTAAGAAGTACTCGT 58.238 33.333 0.00 0.00 0.00 4.18
1748 1775 8.221766 GGTGAAAGTCAATTTAAGAAGTACTCG 58.778 37.037 0.00 0.00 0.00 4.18
1749 1776 9.274206 AGGTGAAAGTCAATTTAAGAAGTACTC 57.726 33.333 0.00 0.00 0.00 2.59
1750 1777 9.057089 CAGGTGAAAGTCAATTTAAGAAGTACT 57.943 33.333 0.00 0.00 0.00 2.73
1751 1778 7.803659 GCAGGTGAAAGTCAATTTAAGAAGTAC 59.196 37.037 0.00 0.00 0.00 2.73
1784 1811 6.936900 CAGGTTTGAAGATTTAACTGAGGAGA 59.063 38.462 0.00 0.00 0.00 3.71
1807 1834 7.396540 AACCTTGGTTCATAATCTTAAGCAG 57.603 36.000 0.00 0.00 32.77 4.24
1903 1930 6.553100 AGTGTCCTCCAAAATTGAATAACCAA 59.447 34.615 0.00 0.00 0.00 3.67
1972 1999 1.098869 TGCTCCTGCGAAGACTAGAG 58.901 55.000 0.00 0.00 43.34 2.43
1974 2001 1.680735 AGATGCTCCTGCGAAGACTAG 59.319 52.381 0.00 0.00 43.34 2.57
1984 2019 8.046294 AGTCTACGTATTTATAGATGCTCCTG 57.954 38.462 0.00 0.00 30.35 3.86
2001 2039 6.380190 GTCATTAGTCAACTCAAGTCTACGT 58.620 40.000 0.00 0.00 0.00 3.57
2002 2040 5.800941 GGTCATTAGTCAACTCAAGTCTACG 59.199 44.000 0.00 0.00 0.00 3.51
2026 2064 5.102313 GGTCAAGTCAACAAGGTTTTTCAG 58.898 41.667 0.00 0.00 0.00 3.02
2036 2074 1.563111 GTCGTCGGTCAAGTCAACAA 58.437 50.000 0.00 0.00 0.00 2.83
2121 2178 6.369065 TGGTGTTTGTTAACATTGGTTTTGTC 59.631 34.615 9.56 0.00 45.41 3.18
2168 2225 5.182760 ACTCAGAGAAATTTGCCTTCATGTC 59.817 40.000 3.79 0.00 0.00 3.06
2314 2374 9.205513 TCTCCCTCCGTAAACTAATATAAAAGT 57.794 33.333 0.00 0.00 0.00 2.66
2322 2382 5.021458 TCAGTTCTCCCTCCGTAAACTAAT 58.979 41.667 0.00 0.00 0.00 1.73
2340 2400 3.409026 AGAGCCGACAAAGATTCAGTT 57.591 42.857 0.00 0.00 0.00 3.16
2414 2476 0.761187 GCATCTGCACATCCCCTCTA 59.239 55.000 0.00 0.00 41.59 2.43
2476 2538 4.593864 GGCCCCGACGAGATCAGC 62.594 72.222 0.00 0.00 0.00 4.26
2477 2539 4.271816 CGGCCCCGACGAGATCAG 62.272 72.222 0.00 0.00 42.83 2.90
2511 2573 1.110442 CCTTGCTGAGAGTCGAGGAT 58.890 55.000 0.00 0.00 36.21 3.24
2524 2586 1.195115 TCAACCGAGCTATCCTTGCT 58.805 50.000 0.00 0.00 44.24 3.91
2533 2595 1.202758 TCAACAACCATCAACCGAGCT 60.203 47.619 0.00 0.00 0.00 4.09
2534 2596 1.234821 TCAACAACCATCAACCGAGC 58.765 50.000 0.00 0.00 0.00 5.03
2535 2597 2.878406 AGTTCAACAACCATCAACCGAG 59.122 45.455 0.00 0.00 32.22 4.63
2536 2598 2.616376 CAGTTCAACAACCATCAACCGA 59.384 45.455 0.00 0.00 32.22 4.69
2537 2599 2.616376 TCAGTTCAACAACCATCAACCG 59.384 45.455 0.00 0.00 32.22 4.44
2538 2600 4.613622 CGATCAGTTCAACAACCATCAACC 60.614 45.833 0.00 0.00 32.22 3.77
2541 2618 3.996363 CTCGATCAGTTCAACAACCATCA 59.004 43.478 0.00 0.00 32.22 3.07
2544 2621 3.469008 ACTCGATCAGTTCAACAACCA 57.531 42.857 0.00 0.00 32.22 3.67
2565 2642 2.630098 ACTCAAGAGTTCAGCACTGCTA 59.370 45.455 2.39 0.00 38.83 3.49
2566 2643 1.415659 ACTCAAGAGTTCAGCACTGCT 59.584 47.619 0.00 0.00 38.83 4.24
2567 2644 1.530293 CACTCAAGAGTTCAGCACTGC 59.470 52.381 0.00 0.00 40.20 4.40
2568 2645 3.058450 CTCACTCAAGAGTTCAGCACTG 58.942 50.000 0.00 0.00 40.20 3.66
2629 2713 3.140144 ACAAGAGAATGGAAGGGGAAACA 59.860 43.478 0.00 0.00 0.00 2.83
2630 2714 3.767711 ACAAGAGAATGGAAGGGGAAAC 58.232 45.455 0.00 0.00 0.00 2.78
2634 2718 4.510167 ACATACAAGAGAATGGAAGGGG 57.490 45.455 0.00 0.00 0.00 4.79
2684 2768 3.554934 TGCTCCAATATCACAATCCACC 58.445 45.455 0.00 0.00 0.00 4.61
2700 2784 1.639298 GCGTCTGTTGGACATGCTCC 61.639 60.000 7.22 7.22 44.70 4.70
2701 2785 0.671781 AGCGTCTGTTGGACATGCTC 60.672 55.000 0.00 0.00 44.70 4.26
2702 2786 0.671781 GAGCGTCTGTTGGACATGCT 60.672 55.000 0.00 0.00 44.70 3.79
2703 2787 1.790387 GAGCGTCTGTTGGACATGC 59.210 57.895 0.00 0.00 44.70 4.06
2704 2788 0.667487 ACGAGCGTCTGTTGGACATG 60.667 55.000 0.00 0.00 44.70 3.21
2705 2789 0.033504 AACGAGCGTCTGTTGGACAT 59.966 50.000 0.00 0.00 44.70 3.06
2706 2790 0.669619 TAACGAGCGTCTGTTGGACA 59.330 50.000 0.00 0.00 44.70 4.02
2707 2791 1.774639 TTAACGAGCGTCTGTTGGAC 58.225 50.000 0.00 0.00 41.28 4.02
2708 2792 2.512485 TTTAACGAGCGTCTGTTGGA 57.488 45.000 0.00 0.00 0.00 3.53
2738 2953 4.679654 GCGCAAAAACACTATTTAAGCACT 59.320 37.500 0.30 0.00 0.00 4.40
2739 2954 4.431086 CGCGCAAAAACACTATTTAAGCAC 60.431 41.667 8.75 0.00 0.00 4.40
2740 2955 3.666334 CGCGCAAAAACACTATTTAAGCA 59.334 39.130 8.75 0.00 0.00 3.91
2741 2956 3.479707 GCGCGCAAAAACACTATTTAAGC 60.480 43.478 29.10 0.00 0.00 3.09
2742 2957 3.240899 CGCGCGCAAAAACACTATTTAAG 60.241 43.478 32.61 3.88 0.00 1.85
2745 2960 1.049251 CGCGCGCAAAAACACTATTT 58.951 45.000 32.61 0.00 0.00 1.40
2746 2961 0.727793 CCGCGCGCAAAAACACTATT 60.728 50.000 32.61 0.00 0.00 1.73
2747 2962 1.154301 CCGCGCGCAAAAACACTAT 60.154 52.632 32.61 0.00 0.00 2.12
2748 2963 2.249896 CCGCGCGCAAAAACACTA 59.750 55.556 32.61 0.00 0.00 2.74
2749 2964 4.622456 CCCGCGCGCAAAAACACT 62.622 61.111 32.61 0.00 0.00 3.55
2750 2965 4.615834 TCCCGCGCGCAAAAACAC 62.616 61.111 32.61 0.00 0.00 3.32
2751 2966 4.320928 CTCCCGCGCGCAAAAACA 62.321 61.111 32.61 6.95 0.00 2.83
2756 2971 4.683721 TAAACCTCCCGCGCGCAA 62.684 61.111 32.61 14.83 0.00 4.85
2759 2974 4.745751 TGGTAAACCTCCCGCGCG 62.746 66.667 25.67 25.67 36.82 6.86
2760 2975 2.588856 ATCTGGTAAACCTCCCGCGC 62.589 60.000 0.00 0.00 36.82 6.86
2761 2976 0.810031 CATCTGGTAAACCTCCCGCG 60.810 60.000 0.00 0.00 36.82 6.46
2763 2978 0.251916 TGCATCTGGTAAACCTCCCG 59.748 55.000 0.02 0.00 36.82 5.14
2764 2979 1.004277 TGTGCATCTGGTAAACCTCCC 59.996 52.381 0.02 0.00 36.82 4.30
2766 2981 4.846779 TTTTGTGCATCTGGTAAACCTC 57.153 40.909 0.02 0.00 36.82 3.85
2767 2982 4.404073 TGTTTTTGTGCATCTGGTAAACCT 59.596 37.500 0.02 0.00 36.82 3.50
2768 2983 4.506288 GTGTTTTTGTGCATCTGGTAAACC 59.494 41.667 0.00 0.00 0.00 3.27
2769 2984 4.206200 CGTGTTTTTGTGCATCTGGTAAAC 59.794 41.667 0.00 0.00 0.00 2.01
2770 2985 4.355437 CGTGTTTTTGTGCATCTGGTAAA 58.645 39.130 0.00 0.00 0.00 2.01
2771 2986 3.243234 CCGTGTTTTTGTGCATCTGGTAA 60.243 43.478 0.00 0.00 0.00 2.85
2772 2987 2.292016 CCGTGTTTTTGTGCATCTGGTA 59.708 45.455 0.00 0.00 0.00 3.25
2773 2988 1.066908 CCGTGTTTTTGTGCATCTGGT 59.933 47.619 0.00 0.00 0.00 4.00
2774 2989 1.066908 ACCGTGTTTTTGTGCATCTGG 59.933 47.619 0.00 0.00 0.00 3.86
2776 2991 2.292292 GGTACCGTGTTTTTGTGCATCT 59.708 45.455 0.00 0.00 0.00 2.90
2778 2993 1.338655 GGGTACCGTGTTTTTGTGCAT 59.661 47.619 5.65 0.00 40.86 3.96
2780 2995 3.555401 GGGTACCGTGTTTTTGTGC 57.445 52.632 5.65 0.00 40.86 4.57
2821 3036 2.521733 AATTTAACGCACGCGGGCTG 62.522 55.000 32.88 25.98 44.69 4.85
2822 3037 1.858372 AAATTTAACGCACGCGGGCT 61.858 50.000 32.88 16.96 44.69 5.19
2823 3038 0.179194 TAAATTTAACGCACGCGGGC 60.179 50.000 26.66 26.66 44.69 6.13
2824 3039 1.136029 TGTAAATTTAACGCACGCGGG 60.136 47.619 16.70 7.92 44.69 6.13
2825 3040 2.229247 TGTAAATTTAACGCACGCGG 57.771 45.000 16.70 0.00 44.69 6.46
2826 3041 3.219981 AGTTGTAAATTTAACGCACGCG 58.780 40.909 10.36 10.36 46.03 6.01
2827 3042 4.201233 CGAAGTTGTAAATTTAACGCACGC 60.201 41.667 0.00 0.00 32.24 5.34
2828 3043 4.899616 ACGAAGTTGTAAATTTAACGCACG 59.100 37.500 0.00 8.52 37.78 5.34
2846 3061 5.827568 ATAAAGCATGCACAAAAACGAAG 57.172 34.783 21.98 0.00 0.00 3.79
2852 3154 6.705381 AGCTGTAAAATAAAGCATGCACAAAA 59.295 30.769 21.98 0.20 39.47 2.44
2858 3160 5.005107 GCAGAAGCTGTAAAATAAAGCATGC 59.995 40.000 10.51 10.51 39.47 4.06
2875 3177 1.510480 AACAACGCTCCAGCAGAAGC 61.510 55.000 0.00 0.00 42.21 3.86
2876 3178 0.947244 AAACAACGCTCCAGCAGAAG 59.053 50.000 0.00 0.00 42.21 2.85
2877 3179 1.333619 GAAAACAACGCTCCAGCAGAA 59.666 47.619 0.00 0.00 42.21 3.02
2879 3181 0.384725 CGAAAACAACGCTCCAGCAG 60.385 55.000 0.00 0.00 42.21 4.24
2880 3182 1.646540 CGAAAACAACGCTCCAGCA 59.353 52.632 0.00 0.00 42.21 4.41
2881 3183 1.082104 CCGAAAACAACGCTCCAGC 60.082 57.895 0.00 0.00 37.78 4.85
2882 3184 1.574428 CCCGAAAACAACGCTCCAG 59.426 57.895 0.00 0.00 0.00 3.86
2883 3185 2.548295 GCCCGAAAACAACGCTCCA 61.548 57.895 0.00 0.00 0.00 3.86
2884 3186 2.254350 GCCCGAAAACAACGCTCC 59.746 61.111 0.00 0.00 0.00 4.70
2888 3190 2.426752 CTGCGCCCGAAAACAACG 60.427 61.111 4.18 0.00 0.00 4.10
2890 3192 3.972276 GCCTGCGCCCGAAAACAA 61.972 61.111 4.18 0.00 0.00 2.83
2902 3208 0.939419 CAAAGCTTTTTGGTGCCTGC 59.061 50.000 9.53 0.00 0.00 4.85
2904 3210 3.348647 AAACAAAGCTTTTTGGTGCCT 57.651 38.095 9.53 0.00 36.30 4.75
2923 3229 1.478137 ATAAAACGTGCGCGCAAAAA 58.522 40.000 38.24 18.24 42.83 1.94
2930 3236 0.357567 GCGTCAAATAAAACGTGCGC 59.642 50.000 0.00 0.00 40.87 6.09
2931 3237 0.621465 CGCGTCAAATAAAACGTGCG 59.379 50.000 0.00 0.00 41.69 5.34
2935 3241 3.163642 ACAGACGCGTCAAATAAAACG 57.836 42.857 37.85 17.23 41.68 3.60
2936 3242 3.662186 CCAACAGACGCGTCAAATAAAAC 59.338 43.478 37.85 11.37 0.00 2.43
2937 3243 3.560481 TCCAACAGACGCGTCAAATAAAA 59.440 39.130 37.85 16.57 0.00 1.52
2939 3245 2.734606 CTCCAACAGACGCGTCAAATAA 59.265 45.455 37.85 18.66 0.00 1.40
2940 3246 2.029739 TCTCCAACAGACGCGTCAAATA 60.030 45.455 37.85 18.17 0.00 1.40
2941 3247 1.148310 CTCCAACAGACGCGTCAAAT 58.852 50.000 37.85 21.36 0.00 2.32
2942 3248 0.103390 TCTCCAACAGACGCGTCAAA 59.897 50.000 37.85 16.50 0.00 2.69
2944 3250 0.388520 CATCTCCAACAGACGCGTCA 60.389 55.000 37.85 17.51 32.26 4.35
2945 3251 1.687494 GCATCTCCAACAGACGCGTC 61.687 60.000 31.30 31.30 28.87 5.19
2948 3254 2.378028 GAGCATCTCCAACAGACGC 58.622 57.895 0.00 0.00 40.90 5.19
2958 3264 7.236007 TGGAAGTTGCCAAAAAGAGCATCTC 62.236 44.000 0.00 0.00 39.05 2.75
2959 3265 5.476789 TGGAAGTTGCCAAAAAGAGCATCT 61.477 41.667 0.00 0.00 41.09 2.90
2960 3266 3.243839 TGGAAGTTGCCAAAAAGAGCATC 60.244 43.478 0.00 0.00 39.11 3.91
2961 3267 2.699846 TGGAAGTTGCCAAAAAGAGCAT 59.300 40.909 0.00 0.00 39.11 3.79
2963 3269 2.362077 TCTGGAAGTTGCCAAAAAGAGC 59.638 45.455 0.00 0.00 37.52 4.09
2964 3270 3.885297 TCTCTGGAAGTTGCCAAAAAGAG 59.115 43.478 3.21 3.21 37.52 2.85
2971 3277 3.963733 CCATCTCTGGAAGTTGCCA 57.036 52.632 0.00 0.00 46.37 4.92
2980 3286 5.251764 AGTGTTCATCTTTTCCATCTCTGG 58.748 41.667 0.00 0.00 44.64 3.86
2981 3287 6.814506 AAGTGTTCATCTTTTCCATCTCTG 57.185 37.500 0.00 0.00 0.00 3.35
2982 3288 6.432472 GGAAAGTGTTCATCTTTTCCATCTCT 59.568 38.462 9.34 0.00 35.62 3.10
2983 3289 6.616017 GGAAAGTGTTCATCTTTTCCATCTC 58.384 40.000 9.34 0.00 35.62 2.75
2984 3290 5.182001 CGGAAAGTGTTCATCTTTTCCATCT 59.818 40.000 13.41 0.00 35.62 2.90
2985 3291 5.393962 CGGAAAGTGTTCATCTTTTCCATC 58.606 41.667 13.41 0.00 35.62 3.51
2986 3292 4.218417 CCGGAAAGTGTTCATCTTTTCCAT 59.782 41.667 13.41 0.00 35.62 3.41
2990 3764 2.955660 TGCCGGAAAGTGTTCATCTTTT 59.044 40.909 5.05 0.00 35.62 2.27
3032 3806 8.616076 CCGCAGTATTCATCTTTCTATTCTTTT 58.384 33.333 0.00 0.00 0.00 2.27
3033 3807 7.770897 ACCGCAGTATTCATCTTTCTATTCTTT 59.229 33.333 0.00 0.00 0.00 2.52
3034 3808 7.275920 ACCGCAGTATTCATCTTTCTATTCTT 58.724 34.615 0.00 0.00 0.00 2.52
3036 3810 8.651588 CATACCGCAGTATTCATCTTTCTATTC 58.348 37.037 0.00 0.00 37.06 1.75
3037 3811 7.604164 CCATACCGCAGTATTCATCTTTCTATT 59.396 37.037 0.00 0.00 37.06 1.73
3038 3812 7.099764 CCATACCGCAGTATTCATCTTTCTAT 58.900 38.462 0.00 0.00 37.06 1.98
3039 3813 6.455647 CCATACCGCAGTATTCATCTTTCTA 58.544 40.000 0.00 0.00 37.06 2.10
3040 3814 5.300752 CCATACCGCAGTATTCATCTTTCT 58.699 41.667 0.00 0.00 37.06 2.52
3041 3815 4.083802 GCCATACCGCAGTATTCATCTTTC 60.084 45.833 0.00 0.00 37.06 2.62
3042 3816 3.815401 GCCATACCGCAGTATTCATCTTT 59.185 43.478 0.00 0.00 37.06 2.52
3044 3818 2.368548 TGCCATACCGCAGTATTCATCT 59.631 45.455 0.00 0.00 37.06 2.90
3045 3819 2.766313 TGCCATACCGCAGTATTCATC 58.234 47.619 0.00 0.00 37.06 2.92
3047 3821 2.928801 ATGCCATACCGCAGTATTCA 57.071 45.000 0.00 0.00 43.26 2.57
3048 3822 2.484264 GGAATGCCATACCGCAGTATTC 59.516 50.000 0.00 0.00 43.26 1.75
3052 3826 1.152963 GGGAATGCCATACCGCAGT 60.153 57.895 0.00 0.00 43.26 4.40
3053 3827 1.898574 GGGGAATGCCATACCGCAG 60.899 63.158 0.00 0.00 43.26 5.18
3057 3831 0.468029 CAGTGGGGGAATGCCATACC 60.468 60.000 0.00 0.00 35.15 2.73
3058 3832 0.468029 CCAGTGGGGGAATGCCATAC 60.468 60.000 0.00 0.00 35.15 2.39
3059 3833 0.625980 TCCAGTGGGGGAATGCCATA 60.626 55.000 9.92 0.00 37.22 2.74
3060 3834 1.517538 TTCCAGTGGGGGAATGCCAT 61.518 55.000 9.92 0.00 41.92 4.40
3061 3835 2.166346 TTCCAGTGGGGGAATGCCA 61.166 57.895 9.92 0.00 41.92 4.92
3062 3836 2.770130 TTCCAGTGGGGGAATGCC 59.230 61.111 9.92 0.00 41.92 4.40
3066 3840 0.996762 AACCAGTTCCAGTGGGGGAA 60.997 55.000 9.92 0.00 43.06 3.97
3067 3841 0.996762 AAACCAGTTCCAGTGGGGGA 60.997 55.000 9.92 0.00 43.06 4.81
3068 3842 0.105709 AAAACCAGTTCCAGTGGGGG 60.106 55.000 9.92 8.79 43.06 5.40
3069 3843 1.788229 AAAAACCAGTTCCAGTGGGG 58.212 50.000 9.92 4.87 43.06 4.96
3088 3862 2.962421 CTCCAGTGGGGTTTGCTAAAAA 59.038 45.455 9.92 0.00 38.11 1.94
3089 3863 2.593026 CTCCAGTGGGGTTTGCTAAAA 58.407 47.619 9.92 0.00 38.11 1.52
3090 3864 1.821666 GCTCCAGTGGGGTTTGCTAAA 60.822 52.381 11.68 0.00 38.11 1.85
3091 3865 0.251165 GCTCCAGTGGGGTTTGCTAA 60.251 55.000 11.68 0.00 38.11 3.09
3092 3866 1.378762 GCTCCAGTGGGGTTTGCTA 59.621 57.895 11.68 0.00 38.11 3.49
3093 3867 2.116125 GCTCCAGTGGGGTTTGCT 59.884 61.111 11.68 0.00 38.11 3.91
3094 3868 2.203480 TGCTCCAGTGGGGTTTGC 60.203 61.111 11.68 7.84 38.11 3.68
3095 3869 0.468029 AACTGCTCCAGTGGGGTTTG 60.468 55.000 11.68 3.73 44.62 2.93
3096 3870 0.261696 AAACTGCTCCAGTGGGGTTT 59.738 50.000 11.68 12.90 44.62 3.27
3097 3871 0.261696 AAAACTGCTCCAGTGGGGTT 59.738 50.000 11.68 7.77 44.62 4.11
3098 3872 0.261696 AAAAACTGCTCCAGTGGGGT 59.738 50.000 11.68 1.67 44.62 4.95
3099 3873 0.675633 CAAAAACTGCTCCAGTGGGG 59.324 55.000 9.92 7.11 44.62 4.96
3100 3874 1.402787 ACAAAAACTGCTCCAGTGGG 58.597 50.000 9.92 0.89 44.62 4.61
3101 3875 3.525268 AAACAAAAACTGCTCCAGTGG 57.475 42.857 1.40 1.40 44.62 4.00
3102 3876 4.493547 TCAAAACAAAAACTGCTCCAGTG 58.506 39.130 0.00 0.00 44.62 3.66
3104 3878 4.114794 CCTCAAAACAAAAACTGCTCCAG 58.885 43.478 0.00 0.00 37.52 3.86
3105 3879 3.118811 CCCTCAAAACAAAAACTGCTCCA 60.119 43.478 0.00 0.00 0.00 3.86
3106 3880 3.457234 CCCTCAAAACAAAAACTGCTCC 58.543 45.455 0.00 0.00 0.00 4.70
3107 3881 3.118775 ACCCCTCAAAACAAAAACTGCTC 60.119 43.478 0.00 0.00 0.00 4.26
3108 3882 2.837591 ACCCCTCAAAACAAAAACTGCT 59.162 40.909 0.00 0.00 0.00 4.24
3109 3883 3.194861 GACCCCTCAAAACAAAAACTGC 58.805 45.455 0.00 0.00 0.00 4.40
3110 3884 3.431626 GGGACCCCTCAAAACAAAAACTG 60.432 47.826 0.00 0.00 0.00 3.16
3111 3885 2.769663 GGGACCCCTCAAAACAAAAACT 59.230 45.455 0.00 0.00 0.00 2.66
3112 3886 2.502130 TGGGACCCCTCAAAACAAAAAC 59.498 45.455 8.45 0.00 36.94 2.43
3113 3887 2.502130 GTGGGACCCCTCAAAACAAAAA 59.498 45.455 8.45 0.00 36.94 1.94
3114 3888 2.112190 GTGGGACCCCTCAAAACAAAA 58.888 47.619 8.45 0.00 36.94 2.44
3115 3889 1.289530 AGTGGGACCCCTCAAAACAAA 59.710 47.619 8.45 0.00 36.94 2.83
3116 3890 0.930726 AGTGGGACCCCTCAAAACAA 59.069 50.000 8.45 0.00 36.94 2.83
3117 3891 0.184933 CAGTGGGACCCCTCAAAACA 59.815 55.000 8.45 0.00 36.94 2.83
3118 3892 0.539669 CCAGTGGGACCCCTCAAAAC 60.540 60.000 8.45 0.00 35.59 2.43
3119 3893 0.699577 TCCAGTGGGACCCCTCAAAA 60.700 55.000 9.92 0.00 38.64 2.44
3120 3894 0.699577 TTCCAGTGGGACCCCTCAAA 60.700 55.000 9.92 0.00 44.89 2.69
3121 3895 1.073319 TTCCAGTGGGACCCCTCAA 60.073 57.895 9.92 0.00 44.89 3.02
3122 3896 1.846124 GTTCCAGTGGGACCCCTCA 60.846 63.158 9.79 0.00 44.89 3.86
3123 3897 1.842381 CTGTTCCAGTGGGACCCCTC 61.842 65.000 18.49 3.52 44.89 4.30
3124 3898 1.847968 CTGTTCCAGTGGGACCCCT 60.848 63.158 18.49 1.39 44.89 4.79
3125 3899 2.757077 CTGTTCCAGTGGGACCCC 59.243 66.667 18.49 2.69 44.89 4.95
3126 3900 2.154074 ACCTGTTCCAGTGGGACCC 61.154 63.158 18.49 2.45 44.89 4.46
3127 3901 1.073199 CACCTGTTCCAGTGGGACC 59.927 63.158 18.49 2.50 44.89 4.46
3128 3902 1.600916 GCACCTGTTCCAGTGGGAC 60.601 63.158 14.36 14.36 44.89 4.46
3129 3903 2.055689 CTGCACCTGTTCCAGTGGGA 62.056 60.000 9.92 0.00 43.03 4.37
3130 3904 1.601759 CTGCACCTGTTCCAGTGGG 60.602 63.158 9.92 0.00 0.00 4.61
3131 3905 0.179020 TTCTGCACCTGTTCCAGTGG 60.179 55.000 1.40 1.40 0.00 4.00
3132 3906 1.605710 CTTTCTGCACCTGTTCCAGTG 59.394 52.381 0.00 0.00 0.00 3.66
3133 3907 1.477558 CCTTTCTGCACCTGTTCCAGT 60.478 52.381 0.00 0.00 0.00 4.00
3134 3908 1.202806 TCCTTTCTGCACCTGTTCCAG 60.203 52.381 0.00 0.00 0.00 3.86
3135 3909 0.843309 TCCTTTCTGCACCTGTTCCA 59.157 50.000 0.00 0.00 0.00 3.53
3136 3910 1.072331 TCTCCTTTCTGCACCTGTTCC 59.928 52.381 0.00 0.00 0.00 3.62
3137 3911 2.037772 TCTCTCCTTTCTGCACCTGTTC 59.962 50.000 0.00 0.00 0.00 3.18
3138 3912 2.050144 TCTCTCCTTTCTGCACCTGTT 58.950 47.619 0.00 0.00 0.00 3.16
3139 3913 1.722034 TCTCTCCTTTCTGCACCTGT 58.278 50.000 0.00 0.00 0.00 4.00
3140 3914 2.038295 ACTTCTCTCCTTTCTGCACCTG 59.962 50.000 0.00 0.00 0.00 4.00
3141 3915 2.334023 ACTTCTCTCCTTTCTGCACCT 58.666 47.619 0.00 0.00 0.00 4.00
3142 3916 2.849294 ACTTCTCTCCTTTCTGCACC 57.151 50.000 0.00 0.00 0.00 5.01
3143 3917 3.733337 TGAACTTCTCTCCTTTCTGCAC 58.267 45.455 0.00 0.00 0.00 4.57
3144 3918 4.285517 AGATGAACTTCTCTCCTTTCTGCA 59.714 41.667 0.00 0.00 0.00 4.41
3145 3919 4.831107 AGATGAACTTCTCTCCTTTCTGC 58.169 43.478 0.00 0.00 0.00 4.26
3199 3973 2.025037 TGGGCCTCATTTGCTTGTAGAT 60.025 45.455 4.53 0.00 0.00 1.98
3249 4035 3.261951 CCGTGGCGTATTGCTCCG 61.262 66.667 0.00 0.00 45.43 4.63
3366 4166 0.986550 AGCCGGGCTATGTAGGGTTT 60.987 55.000 22.47 0.00 36.99 3.27
3380 4180 2.963101 AAACGGAGGGGTAAGCCGG 61.963 63.158 0.00 0.00 34.97 6.13
3381 4181 1.743995 CAAACGGAGGGGTAAGCCG 60.744 63.158 0.00 0.00 34.97 5.52
3382 4182 2.044555 GCAAACGGAGGGGTAAGCC 61.045 63.158 0.00 0.00 0.00 4.35
3383 4183 2.396157 CGCAAACGGAGGGGTAAGC 61.396 63.158 0.00 0.00 34.97 3.09
3384 4184 2.396157 GCGCAAACGGAGGGGTAAG 61.396 63.158 0.30 0.00 40.57 2.34
3385 4185 2.358984 GCGCAAACGGAGGGGTAA 60.359 61.111 0.30 0.00 40.57 2.85
3386 4186 4.397832 GGCGCAAACGGAGGGGTA 62.398 66.667 10.83 0.00 40.57 3.69
3395 4195 2.115291 GGAGGATGGAGGCGCAAAC 61.115 63.158 10.83 0.00 0.00 2.93
3396 4196 2.272146 GGAGGATGGAGGCGCAAA 59.728 61.111 10.83 0.00 0.00 3.68
3478 4278 2.493088 TTCAAACGTGCGATGCGAGC 62.493 55.000 0.00 0.00 0.00 5.03
3493 4293 1.873698 CCGGTCGGTTTCTTCTTCAA 58.126 50.000 0.55 0.00 0.00 2.69
3508 4308 2.100879 GAACTGACCTGAGTGCCGGT 62.101 60.000 1.90 0.00 35.90 5.28
3530 4330 2.202388 CGAGCAGCACAAATGGCG 60.202 61.111 0.00 0.00 36.08 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.