Multiple sequence alignment - TraesCS5A01G215600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G215600 chr5A 100.000 5790 0 0 1 5790 431890137 431895926 0.000000e+00 10693.0
1 TraesCS5A01G215600 chr5A 87.791 172 21 0 3414 3585 431893373 431893544 9.840000e-48 202.0
2 TraesCS5A01G215600 chr5A 87.791 172 21 0 3237 3408 431893550 431893721 9.840000e-48 202.0
3 TraesCS5A01G215600 chr5A 90.323 93 9 0 3521 3613 431893555 431893647 7.880000e-24 122.0
4 TraesCS5A01G215600 chr5A 90.323 93 9 0 3419 3511 431893657 431893749 7.880000e-24 122.0
5 TraesCS5A01G215600 chr5A 89.286 84 6 2 4914 4995 431906651 431906733 1.030000e-17 102.0
6 TraesCS5A01G215600 chr5A 88.235 85 10 0 5702 5786 431907148 431907232 1.030000e-17 102.0
7 TraesCS5A01G215600 chr5A 76.329 207 28 13 5218 5419 431906961 431907151 2.220000e-14 91.6
8 TraesCS5A01G215600 chr5B 89.817 2573 141 41 991 3511 386838271 386840774 0.000000e+00 3188.0
9 TraesCS5A01G215600 chr5B 81.507 1022 110 37 1 989 386837238 386838213 0.000000e+00 767.0
10 TraesCS5A01G215600 chr5B 88.397 655 40 19 4415 5045 386841263 386841905 0.000000e+00 756.0
11 TraesCS5A01G215600 chr5B 80.591 474 38 14 5076 5530 386841908 386842346 3.370000e-82 316.0
12 TraesCS5A01G215600 chr5B 87.018 285 28 3 3411 3693 386840577 386840854 4.360000e-81 313.0
13 TraesCS5A01G215600 chr5B 82.776 389 23 18 3996 4376 386840926 386841278 2.030000e-79 307.0
14 TraesCS5A01G215600 chr5B 90.351 114 11 0 5675 5788 386842627 386842740 3.610000e-32 150.0
15 TraesCS5A01G215600 chr5B 93.590 78 5 0 5702 5779 387093337 387093414 3.670000e-22 117.0
16 TraesCS5A01G215600 chr5B 93.023 43 0 2 5030 5069 618474569 618474527 6.270000e-05 60.2
17 TraesCS5A01G215600 chr5D 92.353 2210 104 25 980 3160 331256239 331258412 0.000000e+00 3085.0
18 TraesCS5A01G215600 chr5D 85.583 1741 137 52 3629 5323 331258737 331260409 0.000000e+00 1720.0
19 TraesCS5A01G215600 chr5D 88.956 996 77 22 1 985 331255219 331256192 0.000000e+00 1199.0
20 TraesCS5A01G215600 chr5D 83.654 416 35 14 5373 5788 331260569 331260951 1.530000e-95 361.0
21 TraesCS5A01G215600 chr5D 91.743 218 18 0 3191 3408 331258413 331258630 2.620000e-78 303.0
22 TraesCS5A01G215600 chr5D 92.571 175 13 0 3412 3586 331258457 331258631 9.630000e-63 252.0
23 TraesCS5A01G215600 chr5D 88.587 184 11 7 4818 4995 331262102 331262281 1.260000e-51 215.0
24 TraesCS5A01G215600 chr5D 89.744 156 7 5 5550 5702 61793685 61793834 2.130000e-44 191.0
25 TraesCS5A01G215600 chr5D 87.313 134 14 2 3074 3205 98723785 98723917 3.610000e-32 150.0
26 TraesCS5A01G215600 chr5D 86.726 113 14 1 3501 3613 331258445 331258556 2.190000e-24 124.0
27 TraesCS5A01G215600 chr5D 88.000 100 11 1 5318 5417 331262636 331262734 3.670000e-22 117.0
28 TraesCS5A01G215600 chr5D 90.698 86 8 0 5318 5403 331260432 331260517 1.320000e-21 115.0
29 TraesCS5A01G215600 chr5D 83.333 126 16 3 5076 5197 10757217 10757341 1.710000e-20 111.0
30 TraesCS5A01G215600 chr5D 85.000 100 10 3 5218 5317 331262510 331262604 4.780000e-16 97.1
31 TraesCS5A01G215600 chr5D 100.000 30 0 0 5040 5069 267821477 267821506 8.100000e-04 56.5
32 TraesCS5A01G215600 chr1D 87.160 257 27 3 3074 3327 359830742 359830995 2.640000e-73 287.0
33 TraesCS5A01G215600 chr1D 87.273 110 14 0 5088 5197 383158552 383158661 6.090000e-25 126.0
34 TraesCS5A01G215600 chr1D 87.963 108 11 2 5087 5194 424477100 424477205 6.090000e-25 126.0
35 TraesCS5A01G215600 chr1D 92.683 41 3 0 5029 5069 277349117 277349157 6.270000e-05 60.2
36 TraesCS5A01G215600 chr3B 91.139 158 11 2 5550 5706 97756040 97755885 1.630000e-50 211.0
37 TraesCS5A01G215600 chr3B 91.026 156 11 2 5550 5705 519860808 519860656 2.110000e-49 207.0
38 TraesCS5A01G215600 chr3A 90.506 158 12 2 5550 5706 69662690 69662535 7.610000e-49 206.0
39 TraesCS5A01G215600 chr3A 92.308 65 5 0 3447 3511 536640786 536640722 6.180000e-15 93.5
40 TraesCS5A01G215600 chr3A 79.730 148 14 8 3260 3406 536640884 536640752 6.180000e-15 93.5
41 TraesCS5A01G215600 chr3A 92.683 41 3 0 5038 5078 580599691 580599651 6.270000e-05 60.2
42 TraesCS5A01G215600 chr3A 100.000 32 0 0 5038 5069 729116923 729116892 6.270000e-05 60.2
43 TraesCS5A01G215600 chr4A 89.809 157 13 2 5550 5706 165816392 165816545 1.270000e-46 198.0
44 TraesCS5A01G215600 chr2D 89.308 159 13 3 5550 5706 539169651 539169807 4.580000e-46 196.0
45 TraesCS5A01G215600 chr2D 91.111 45 1 2 5034 5077 555933395 555933353 2.250000e-04 58.4
46 TraesCS5A01G215600 chr2D 100.000 30 0 0 3858 3887 423333856 423333827 8.100000e-04 56.5
47 TraesCS5A01G215600 chr4D 89.542 153 13 2 5550 5702 8648660 8648511 2.130000e-44 191.0
48 TraesCS5A01G215600 chr4D 92.308 65 5 0 3549 3613 21524090 21524154 6.180000e-15 93.5
49 TraesCS5A01G215600 chrUn 88.535 157 15 2 5550 5706 87229796 87229949 2.750000e-43 187.0
50 TraesCS5A01G215600 chrUn 87.273 110 13 1 5088 5197 28288799 28288691 2.190000e-24 124.0
51 TraesCS5A01G215600 chr7D 87.500 112 11 3 5087 5197 46768027 46767918 6.090000e-25 126.0
52 TraesCS5A01G215600 chr7D 85.586 111 16 0 5087 5197 60494747 60494637 3.670000e-22 117.0
53 TraesCS5A01G215600 chr2A 87.037 108 12 2 5087 5192 592092893 592093000 2.830000e-23 121.0
54 TraesCS5A01G215600 chr1B 84.615 117 18 0 3089 3205 3271160 3271044 3.670000e-22 117.0
55 TraesCS5A01G215600 chr6B 93.333 60 4 0 5357 5416 692573201 692573142 7.990000e-14 89.8
56 TraesCS5A01G215600 chr6B 76.316 114 23 4 3775 3886 52058984 52059095 2.250000e-04 58.4
57 TraesCS5A01G215600 chr2B 91.111 45 1 2 5034 5077 662797640 662797598 2.250000e-04 58.4
58 TraesCS5A01G215600 chr2B 87.755 49 4 1 5029 5077 448906722 448906768 8.100000e-04 56.5
59 TraesCS5A01G215600 chr3D 100.000 28 0 0 4630 4657 481277979 481277952 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G215600 chr5A 431890137 431895926 5789 False 2268.200000 10693 91.245600 1 5790 5 chr5A.!!$F1 5789
1 TraesCS5A01G215600 chr5B 386837238 386842740 5502 False 828.142857 3188 85.779571 1 5788 7 chr5B.!!$F2 5787
2 TraesCS5A01G215600 chr5D 331255219 331262734 7515 False 689.827273 3085 88.533727 1 5788 11 chr5D.!!$F5 5787

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
986 1028 0.108019 TGGAGCGCCTACGAGATCTA 59.892 55.0 8.34 0.0 43.93 1.98 F
1147 1263 0.535328 CGAGGAGGCGTATCTGGAGA 60.535 60.0 0.00 0.0 0.00 3.71 F
1654 1794 0.598680 CATCGGCTTCGTCCCATCTC 60.599 60.0 0.00 0.0 35.06 2.75 F
3406 3556 0.535553 TACACCTTCCGCCAAACACC 60.536 55.0 0.00 0.0 0.00 4.16 F
3413 3563 0.535553 TCCGCCAAACACCTGTTACC 60.536 55.0 0.00 0.0 37.25 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1934 2074 0.389948 TTCTTCTTCTTCTCCGCCGC 60.390 55.0 0.00 0.0 0.00 6.53 R
1965 2108 0.402121 AGAACTTGGGCAGGGAGAAC 59.598 55.0 0.00 0.0 0.00 3.01 R
3479 3629 0.179032 TGTGCATGTGAACGGAAGGT 60.179 50.0 0.00 0.0 0.00 3.50 R
4755 5075 0.037590 TTCCATTTCCACGTCTGGGG 59.962 55.0 0.00 0.0 38.25 4.96 R
4848 5168 0.687354 ATGAAGAACACTCGGCCACT 59.313 50.0 2.24 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.690913 TTGCTTAGTAAGTGAGGTAAGATACTA 57.309 33.333 11.51 0.00 0.00 1.82
113 128 1.371558 GCGTTTGTGAGAGGGAGGT 59.628 57.895 0.00 0.00 0.00 3.85
154 169 9.308318 GTGTTTTGGTGTTTAAGTTGTTGATAT 57.692 29.630 0.00 0.00 0.00 1.63
194 209 9.822727 ATATTTCTCCTTTTTCTTTAGGGTTGA 57.177 29.630 0.00 0.00 32.20 3.18
237 252 4.836175 GGAAACAAAGTAGAATTGGGGGAA 59.164 41.667 0.00 0.00 32.02 3.97
251 266 1.571955 GGGGAAAGGATTTGTGGCAT 58.428 50.000 0.00 0.00 39.27 4.40
268 283 3.744003 ATGCAGATGCGGGGGCATT 62.744 57.895 2.78 0.00 43.97 3.56
318 333 9.165014 TGATGATTTTCGAACTTAAAACTTTCG 57.835 29.630 0.00 0.00 42.75 3.46
371 386 3.347958 TGTTTTCAGATTCGTGTTGCC 57.652 42.857 0.00 0.00 0.00 4.52
372 387 2.034053 TGTTTTCAGATTCGTGTTGCCC 59.966 45.455 0.00 0.00 0.00 5.36
381 396 2.963548 TCGTGTTGCCCGTGAATATA 57.036 45.000 0.00 0.00 0.00 0.86
420 435 7.964604 ACTGTCAAAACTTAATAGGAGTGAC 57.035 36.000 0.00 0.00 0.00 3.67
422 437 7.873505 ACTGTCAAAACTTAATAGGAGTGACTC 59.126 37.037 3.47 3.47 0.00 3.36
427 442 9.003658 CAAAACTTAATAGGAGTGACTCACAAT 57.996 33.333 15.33 1.48 36.74 2.71
428 443 8.779354 AAACTTAATAGGAGTGACTCACAATC 57.221 34.615 15.33 1.30 42.01 2.67
430 445 8.140112 ACTTAATAGGAGTGACTCACAATCTT 57.860 34.615 15.33 0.79 42.32 2.40
435 450 5.241662 AGGAGTGACTCACAATCTTTAAGC 58.758 41.667 15.33 0.00 42.32 3.09
436 451 5.012561 AGGAGTGACTCACAATCTTTAAGCT 59.987 40.000 15.33 0.00 42.32 3.74
437 452 5.703130 GGAGTGACTCACAATCTTTAAGCTT 59.297 40.000 15.33 3.48 42.32 3.74
484 503 8.314021 TCAGAACTAGATCTTAGAAAATGCACA 58.686 33.333 0.00 0.00 0.00 4.57
500 519 1.263217 GCACACGGAATCAACGACTTT 59.737 47.619 0.00 0.00 34.93 2.66
526 545 2.860293 CGAAACAATCGTGCGGCT 59.140 55.556 0.00 0.00 46.52 5.52
567 601 2.361230 CCCCCAAGAGTTTCCGGC 60.361 66.667 0.00 0.00 0.00 6.13
573 607 1.740025 CCAAGAGTTTCCGGCAGAATC 59.260 52.381 0.00 0.00 33.44 2.52
706 745 5.828299 TTAATCGACATGTTGATTTCCCC 57.172 39.130 35.23 6.04 42.19 4.81
757 796 3.508012 AGCAAAGATAGCGATAGATCCGT 59.492 43.478 0.00 0.00 37.01 4.69
834 876 6.974622 TCGGTTAATTTGTACTCTATCCGTTC 59.025 38.462 0.00 0.00 36.36 3.95
913 955 1.375523 CCCTTATATGCGCGTCCCC 60.376 63.158 4.79 0.00 0.00 4.81
955 997 2.049248 CGCAGCGCCCAAACAAAT 60.049 55.556 2.29 0.00 0.00 2.32
974 1016 1.226547 CTCTTCTCTCGTGGAGCGC 60.227 63.158 0.00 0.00 41.60 5.92
976 1018 2.676822 TTCTCTCGTGGAGCGCCT 60.677 61.111 8.34 0.00 41.60 5.52
977 1019 1.377366 CTTCTCTCGTGGAGCGCCTA 61.377 60.000 8.34 0.00 41.60 3.93
978 1020 1.654954 TTCTCTCGTGGAGCGCCTAC 61.655 60.000 8.34 2.72 41.60 3.18
979 1021 3.456431 CTCTCGTGGAGCGCCTACG 62.456 68.421 22.17 22.17 41.07 3.51
981 1023 3.506096 TCGTGGAGCGCCTACGAG 61.506 66.667 25.13 6.69 43.93 4.18
983 1025 2.835705 CGTGGAGCGCCTACGAGAT 61.836 63.158 23.23 0.00 43.93 2.75
984 1026 1.008309 GTGGAGCGCCTACGAGATC 60.008 63.158 8.34 0.00 43.93 2.75
985 1027 1.152943 TGGAGCGCCTACGAGATCT 60.153 57.895 8.34 0.00 43.93 2.75
986 1028 0.108019 TGGAGCGCCTACGAGATCTA 59.892 55.000 8.34 0.00 43.93 1.98
1128 1244 0.765903 TGGATGATGAGGAGGAGGCC 60.766 60.000 0.00 0.00 0.00 5.19
1129 1245 1.670590 GATGATGAGGAGGAGGCCG 59.329 63.158 0.00 0.00 0.00 6.13
1130 1246 0.829602 GATGATGAGGAGGAGGCCGA 60.830 60.000 0.00 0.00 0.00 5.54
1131 1247 0.831288 ATGATGAGGAGGAGGCCGAG 60.831 60.000 0.00 0.00 0.00 4.63
1132 1248 2.123077 ATGAGGAGGAGGCCGAGG 60.123 66.667 0.00 0.00 0.00 4.63
1133 1249 2.648613 GATGAGGAGGAGGCCGAGGA 62.649 65.000 0.00 0.00 0.00 3.71
1134 1250 2.520741 GAGGAGGAGGCCGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
1135 1251 4.150454 AGGAGGAGGCCGAGGAGG 62.150 72.222 0.00 0.00 44.97 4.30
1147 1263 0.535328 CGAGGAGGCGTATCTGGAGA 60.535 60.000 0.00 0.00 0.00 3.71
1506 1640 2.747855 GAAAGTCTGCCAGGCCCG 60.748 66.667 9.64 0.00 0.00 6.13
1550 1690 2.105128 GGCGAGACAGACCATCCG 59.895 66.667 0.00 0.00 0.00 4.18
1617 1757 1.825191 CGGGGTAGCCGCTACTGTA 60.825 63.158 25.91 0.00 37.16 2.74
1653 1793 1.443407 CATCGGCTTCGTCCCATCT 59.557 57.895 0.00 0.00 35.06 2.90
1654 1794 0.598680 CATCGGCTTCGTCCCATCTC 60.599 60.000 0.00 0.00 35.06 2.75
1786 1926 1.666209 GGTCATGTTCCCCGCAATGG 61.666 60.000 0.00 0.00 37.55 3.16
1921 2061 1.000396 GATGAACCCTGCAAGCCCT 60.000 57.895 0.00 0.00 0.00 5.19
1965 2108 0.615850 AAGAAGAAGAAGAGGGCGGG 59.384 55.000 0.00 0.00 0.00 6.13
2659 2802 6.271566 TCTCAGTCTCATCTCAATTGATTCG 58.728 40.000 8.96 0.00 0.00 3.34
2682 2827 6.312918 TCGTTATGCTCTGTTAATTTCCTGTC 59.687 38.462 0.00 0.00 0.00 3.51
2702 2847 9.904198 TCCTGTCATCTGAATTTATTTCATACA 57.096 29.630 0.00 0.00 43.30 2.29
2787 2937 5.220931 GGGCACAACTATCATTGTCATCTTC 60.221 44.000 0.00 0.00 40.89 2.87
2848 2998 9.623000 ACCAACACTTAGTTCAAAGTACTTTAT 57.377 29.630 20.15 9.55 38.74 1.40
2854 3004 7.654520 ACTTAGTTCAAAGTACTTTATCGTGCA 59.345 33.333 20.15 0.00 37.93 4.57
2855 3005 8.542497 TTAGTTCAAAGTACTTTATCGTGCAT 57.458 30.769 20.15 4.83 0.00 3.96
2900 3050 8.889849 AAAACATTTTCATAAAGTATCGTCGG 57.110 30.769 0.00 0.00 0.00 4.79
2901 3051 7.837202 AACATTTTCATAAAGTATCGTCGGA 57.163 32.000 0.00 0.00 0.00 4.55
2902 3052 8.433421 AACATTTTCATAAAGTATCGTCGGAT 57.567 30.769 0.00 0.00 36.65 4.18
2955 3105 6.478512 AATGATTTGGTACACTTGGTTTGT 57.521 33.333 0.00 0.00 39.29 2.83
3005 3155 3.193267 GCATGTTAAGGGCATCTTCAACA 59.807 43.478 0.00 11.93 36.93 3.33
3008 3158 4.211125 TGTTAAGGGCATCTTCAACAACA 58.789 39.130 0.00 0.00 36.93 3.33
3013 3163 1.686052 GGCATCTTCAACAACAACCCA 59.314 47.619 0.00 0.00 0.00 4.51
3043 3193 7.695480 TCCCTCGATATTTGTTTGAAAATCA 57.305 32.000 0.00 0.00 32.16 2.57
3058 3208 9.559958 GTTTGAAAATCAGTATATGAACCAGTG 57.440 33.333 0.00 0.00 42.53 3.66
3060 3210 8.492673 TGAAAATCAGTATATGAACCAGTGTC 57.507 34.615 0.00 0.00 42.53 3.67
3061 3211 8.321353 TGAAAATCAGTATATGAACCAGTGTCT 58.679 33.333 0.00 0.00 42.53 3.41
3062 3212 9.817809 GAAAATCAGTATATGAACCAGTGTCTA 57.182 33.333 0.00 0.00 42.53 2.59
3065 3215 9.601217 AATCAGTATATGAACCAGTGTCTAAAC 57.399 33.333 0.00 0.00 42.53 2.01
3066 3216 8.129496 TCAGTATATGAACCAGTGTCTAAACA 57.871 34.615 0.00 0.00 34.02 2.83
3067 3217 8.033038 TCAGTATATGAACCAGTGTCTAAACAC 58.967 37.037 0.45 0.45 44.79 3.32
3085 3235 8.251026 TCTAAACACTGATAACACTGATACAGG 58.749 37.037 0.00 0.00 35.51 4.00
3106 3256 2.493030 CGGCCATCGAACCGTACT 59.507 61.111 14.66 0.00 44.46 2.73
3107 3257 1.153706 CGGCCATCGAACCGTACTT 60.154 57.895 14.66 0.00 44.46 2.24
3155 3305 8.071368 TGTGTTAGTAAAATAAAACAGCTTCCG 58.929 33.333 0.00 0.00 29.73 4.30
3160 3310 4.329462 AAATAAAACAGCTTCCGCCAAA 57.671 36.364 0.00 0.00 36.60 3.28
3161 3311 4.535526 AATAAAACAGCTTCCGCCAAAT 57.464 36.364 0.00 0.00 36.60 2.32
3162 3312 2.438868 AAAACAGCTTCCGCCAAATC 57.561 45.000 0.00 0.00 36.60 2.17
3172 3322 1.533731 TCCGCCAAATCTCAAACGTTC 59.466 47.619 0.00 0.00 0.00 3.95
3234 3384 0.934436 CTTGTTGCTTCCGCCAAACG 60.934 55.000 0.00 0.00 43.15 3.60
3235 3385 1.658686 TTGTTGCTTCCGCCAAACGT 61.659 50.000 0.00 0.00 41.42 3.99
3294 3444 2.304180 AGCTCACTAATGCACACCTTCT 59.696 45.455 0.00 0.00 0.00 2.85
3308 3458 0.875059 CCTTCTGCGAAACACCTTCC 59.125 55.000 0.00 0.00 0.00 3.46
3314 3464 0.872388 GCGAAACACCTTCCGTTCAT 59.128 50.000 0.00 0.00 0.00 2.57
3328 3478 2.355197 CGTTCATATGCACACCTTCCA 58.645 47.619 6.32 0.00 0.00 3.53
3330 3480 2.418368 TCATATGCACACCTTCCACC 57.582 50.000 0.00 0.00 0.00 4.61
3343 3493 3.141272 ACCTTCCACCAAAATACCTTCCA 59.859 43.478 0.00 0.00 0.00 3.53
3351 3501 7.676043 TCCACCAAAATACCTTCCATTCAATTA 59.324 33.333 0.00 0.00 0.00 1.40
3396 3546 7.953752 AGTAAGCTCACTAATATACACCTTCC 58.046 38.462 0.00 0.00 0.00 3.46
3397 3547 5.455056 AGCTCACTAATATACACCTTCCG 57.545 43.478 0.00 0.00 0.00 4.30
3398 3548 3.988517 GCTCACTAATATACACCTTCCGC 59.011 47.826 0.00 0.00 0.00 5.54
3399 3549 4.557205 CTCACTAATATACACCTTCCGCC 58.443 47.826 0.00 0.00 0.00 6.13
3400 3550 3.962063 TCACTAATATACACCTTCCGCCA 59.038 43.478 0.00 0.00 0.00 5.69
3401 3551 4.406326 TCACTAATATACACCTTCCGCCAA 59.594 41.667 0.00 0.00 0.00 4.52
3402 3552 5.104859 TCACTAATATACACCTTCCGCCAAA 60.105 40.000 0.00 0.00 0.00 3.28
3403 3553 5.007332 CACTAATATACACCTTCCGCCAAAC 59.993 44.000 0.00 0.00 0.00 2.93
3404 3554 3.637911 ATATACACCTTCCGCCAAACA 57.362 42.857 0.00 0.00 0.00 2.83
3405 3555 1.530323 ATACACCTTCCGCCAAACAC 58.470 50.000 0.00 0.00 0.00 3.32
3406 3556 0.535553 TACACCTTCCGCCAAACACC 60.536 55.000 0.00 0.00 0.00 4.16
3407 3557 1.528309 CACCTTCCGCCAAACACCT 60.528 57.895 0.00 0.00 0.00 4.00
3408 3558 1.528309 ACCTTCCGCCAAACACCTG 60.528 57.895 0.00 0.00 0.00 4.00
3409 3559 1.528309 CCTTCCGCCAAACACCTGT 60.528 57.895 0.00 0.00 0.00 4.00
3410 3560 1.106944 CCTTCCGCCAAACACCTGTT 61.107 55.000 0.00 0.00 40.50 3.16
3411 3561 1.600023 CTTCCGCCAAACACCTGTTA 58.400 50.000 0.00 0.00 37.25 2.41
3412 3562 1.265905 CTTCCGCCAAACACCTGTTAC 59.734 52.381 0.00 0.00 37.25 2.50
3413 3563 0.535553 TCCGCCAAACACCTGTTACC 60.536 55.000 0.00 0.00 37.25 2.85
3414 3564 0.536460 CCGCCAAACACCTGTTACCT 60.536 55.000 0.00 0.00 37.25 3.08
3415 3565 1.314730 CGCCAAACACCTGTTACCTT 58.685 50.000 0.00 0.00 37.25 3.50
3416 3566 1.265905 CGCCAAACACCTGTTACCTTC 59.734 52.381 0.00 0.00 37.25 3.46
3417 3567 1.611977 GCCAAACACCTGTTACCTTCC 59.388 52.381 0.00 0.00 37.25 3.46
3418 3568 1.877443 CCAAACACCTGTTACCTTCCG 59.123 52.381 0.00 0.00 37.25 4.30
3419 3569 2.567985 CAAACACCTGTTACCTTCCGT 58.432 47.619 0.00 0.00 37.25 4.69
3420 3570 2.946990 CAAACACCTGTTACCTTCCGTT 59.053 45.455 0.00 0.00 37.25 4.44
3421 3571 2.538512 ACACCTGTTACCTTCCGTTC 57.461 50.000 0.00 0.00 0.00 3.95
3422 3572 1.764134 ACACCTGTTACCTTCCGTTCA 59.236 47.619 0.00 0.00 0.00 3.18
3423 3573 2.171027 ACACCTGTTACCTTCCGTTCAA 59.829 45.455 0.00 0.00 0.00 2.69
3424 3574 3.181448 ACACCTGTTACCTTCCGTTCAAT 60.181 43.478 0.00 0.00 0.00 2.57
3425 3575 3.818773 CACCTGTTACCTTCCGTTCAATT 59.181 43.478 0.00 0.00 0.00 2.32
3426 3576 3.818773 ACCTGTTACCTTCCGTTCAATTG 59.181 43.478 0.00 0.00 0.00 2.32
3427 3577 3.818773 CCTGTTACCTTCCGTTCAATTGT 59.181 43.478 5.13 0.00 0.00 2.71
3428 3578 4.320202 CCTGTTACCTTCCGTTCAATTGTG 60.320 45.833 5.13 0.00 0.00 3.33
3429 3579 4.200874 TGTTACCTTCCGTTCAATTGTGT 58.799 39.130 5.13 0.00 0.00 3.72
3430 3580 4.035792 TGTTACCTTCCGTTCAATTGTGTG 59.964 41.667 5.13 0.00 0.00 3.82
3431 3581 2.650322 ACCTTCCGTTCAATTGTGTGT 58.350 42.857 5.13 0.00 0.00 3.72
3432 3582 2.616842 ACCTTCCGTTCAATTGTGTGTC 59.383 45.455 5.13 0.00 0.00 3.67
3433 3583 2.616376 CCTTCCGTTCAATTGTGTGTCA 59.384 45.455 5.13 0.00 0.00 3.58
3434 3584 3.303990 CCTTCCGTTCAATTGTGTGTCAG 60.304 47.826 5.13 0.00 0.00 3.51
3435 3585 2.912771 TCCGTTCAATTGTGTGTCAGT 58.087 42.857 5.13 0.00 0.00 3.41
3436 3586 4.061357 TCCGTTCAATTGTGTGTCAGTA 57.939 40.909 5.13 0.00 0.00 2.74
3437 3587 4.443621 TCCGTTCAATTGTGTGTCAGTAA 58.556 39.130 5.13 0.00 0.00 2.24
3438 3588 4.876679 TCCGTTCAATTGTGTGTCAGTAAA 59.123 37.500 5.13 0.00 0.00 2.01
3439 3589 5.354513 TCCGTTCAATTGTGTGTCAGTAAAA 59.645 36.000 5.13 0.00 0.00 1.52
3440 3590 6.038825 TCCGTTCAATTGTGTGTCAGTAAAAT 59.961 34.615 5.13 0.00 0.00 1.82
3441 3591 7.226918 TCCGTTCAATTGTGTGTCAGTAAAATA 59.773 33.333 5.13 0.00 0.00 1.40
3442 3592 7.858382 CCGTTCAATTGTGTGTCAGTAAAATAA 59.142 33.333 5.13 0.00 0.00 1.40
3443 3593 9.393249 CGTTCAATTGTGTGTCAGTAAAATAAT 57.607 29.630 5.13 0.00 0.00 1.28
3471 3621 9.780186 AATTAAGCTCACTAATATACACCTTCC 57.220 33.333 0.00 0.00 0.00 3.46
3478 3628 5.007332 CACTAATATACACCTTCCGCCAAAC 59.993 44.000 0.00 0.00 0.00 2.93
3479 3629 3.637911 ATATACACCTTCCGCCAAACA 57.362 42.857 0.00 0.00 0.00 2.83
3480 3630 1.530323 ATACACCTTCCGCCAAACAC 58.470 50.000 0.00 0.00 0.00 3.32
3481 3631 0.535553 TACACCTTCCGCCAAACACC 60.536 55.000 0.00 0.00 0.00 4.16
3482 3632 1.528309 CACCTTCCGCCAAACACCT 60.528 57.895 0.00 0.00 0.00 4.00
3518 3668 3.244981 ACACCTTCCGCCAAATTACCTTA 60.245 43.478 0.00 0.00 0.00 2.69
3586 3736 3.551846 ACATCTTCCGTCAAACACCTTT 58.448 40.909 0.00 0.00 0.00 3.11
3594 3744 2.094575 CGTCAAACACCTTTCGTTCACA 59.905 45.455 0.00 0.00 0.00 3.58
3599 3749 1.333619 ACACCTTTCGTTCACATGCAC 59.666 47.619 0.00 0.00 0.00 4.57
3605 3755 1.674359 TCGTTCACATGCACACCTTT 58.326 45.000 0.00 0.00 0.00 3.11
3606 3756 2.020720 TCGTTCACATGCACACCTTTT 58.979 42.857 0.00 0.00 0.00 2.27
3624 3776 4.744631 CCTTTTGCCAAACACTTGTATGAC 59.255 41.667 0.00 0.00 0.00 3.06
3630 3864 7.987750 TGCCAAACACTTGTATGACTAATAA 57.012 32.000 0.00 0.00 0.00 1.40
3705 3950 1.152546 AGAGCGGGGCTTTTGGTTT 60.153 52.632 0.00 0.00 39.88 3.27
3751 3996 5.904362 ACAAAGCTTCCCATATTTGTCTC 57.096 39.130 0.00 0.00 40.82 3.36
3758 4003 5.885912 GCTTCCCATATTTGTCTCCAGTTTA 59.114 40.000 0.00 0.00 0.00 2.01
3761 4006 4.574828 CCCATATTTGTCTCCAGTTTACCG 59.425 45.833 0.00 0.00 0.00 4.02
3767 4012 5.744666 TTGTCTCCAGTTTACCGAAAAAG 57.255 39.130 0.00 0.00 0.00 2.27
3768 4013 3.562557 TGTCTCCAGTTTACCGAAAAAGC 59.437 43.478 0.00 0.00 0.00 3.51
3769 4014 2.803956 TCTCCAGTTTACCGAAAAAGCG 59.196 45.455 0.00 0.00 0.00 4.68
3770 4015 2.546789 CTCCAGTTTACCGAAAAAGCGT 59.453 45.455 0.00 0.00 0.00 5.07
3771 4016 2.288458 TCCAGTTTACCGAAAAAGCGTG 59.712 45.455 0.00 0.00 0.00 5.34
3772 4017 2.288458 CCAGTTTACCGAAAAAGCGTGA 59.712 45.455 0.00 0.00 0.00 4.35
3773 4018 3.242804 CCAGTTTACCGAAAAAGCGTGAA 60.243 43.478 0.00 0.00 0.00 3.18
3774 4019 3.722289 CAGTTTACCGAAAAAGCGTGAAC 59.278 43.478 0.00 0.00 0.00 3.18
3776 4021 0.860533 TACCGAAAAAGCGTGAACCG 59.139 50.000 0.00 0.00 40.40 4.44
3778 4023 1.500512 CCGAAAAAGCGTGAACCGGA 61.501 55.000 9.46 0.00 37.87 5.14
3782 4027 2.928642 AAAAGCGTGAACCGGACCGT 62.929 55.000 9.46 0.00 36.94 4.83
3783 4028 3.853597 AAGCGTGAACCGGACCGTC 62.854 63.158 9.46 5.28 36.94 4.79
3801 4046 4.428845 GGGCGGACCGATATAGGA 57.571 61.111 20.50 0.00 36.48 2.94
3802 4047 2.897699 GGGCGGACCGATATAGGAT 58.102 57.895 20.50 0.00 36.48 3.24
3803 4048 0.745468 GGGCGGACCGATATAGGATC 59.255 60.000 20.50 2.84 36.48 3.36
3804 4049 1.471119 GGCGGACCGATATAGGATCA 58.529 55.000 20.50 0.00 34.73 2.92
3805 4050 1.134560 GGCGGACCGATATAGGATCAC 59.865 57.143 20.50 0.00 34.73 3.06
3819 4064 3.074412 AGGATCACGTTGGATGACAAAC 58.926 45.455 0.00 0.00 41.58 2.93
3844 4089 2.305127 CGAACAACGTGGTCCGGAC 61.305 63.158 27.04 27.04 42.24 4.79
3851 4096 4.980805 GTGGTCCGGACGCTTGCA 62.981 66.667 27.68 16.77 0.00 4.08
3852 4097 4.243008 TGGTCCGGACGCTTGCAA 62.243 61.111 27.68 0.00 0.00 4.08
3856 4101 2.357517 CCGGACGCTTGCAAGAGT 60.358 61.111 32.09 32.09 41.86 3.24
3861 4106 1.123655 GACGCTTGCAAGAGTTTTGC 58.876 50.000 32.07 18.21 45.11 3.68
3874 4119 1.146485 TTTTGCGGGTCCGTCTTGA 59.854 52.632 11.25 0.00 42.09 3.02
3895 4140 4.166725 TGAAGATGCCCTAAGGACATCATT 59.833 41.667 17.96 11.36 43.50 2.57
3901 4146 6.266131 TGCCCTAAGGACATCATTAGAATT 57.734 37.500 13.49 0.00 41.28 2.17
3904 4149 6.547510 GCCCTAAGGACATCATTAGAATTTGT 59.452 38.462 13.49 0.00 41.28 2.83
3924 4169 9.719279 AATTTGTTGTTGTTATTGCAAAATGAG 57.281 25.926 1.71 0.00 31.10 2.90
3933 4178 9.985730 TTGTTATTGCAAAATGAGAAAGAATCT 57.014 25.926 1.71 0.00 42.61 2.40
3938 4183 7.707624 TGCAAAATGAGAAAGAATCTGGTAT 57.292 32.000 0.00 0.00 38.96 2.73
3965 4210 6.695278 GTGTTGTTTTTCAATAAGCTGTGCTA 59.305 34.615 0.00 0.00 36.73 3.49
3966 4211 7.382218 GTGTTGTTTTTCAATAAGCTGTGCTAT 59.618 33.333 0.00 0.00 36.73 2.97
3967 4212 8.572185 TGTTGTTTTTCAATAAGCTGTGCTATA 58.428 29.630 0.00 0.00 36.73 1.31
3992 4237 1.001048 GTTTGGGCCGGTTAACTCAAC 60.001 52.381 1.90 0.00 36.32 3.18
3994 4239 1.350071 TGGGCCGGTTAACTCAACTA 58.650 50.000 1.90 0.00 37.30 2.24
3997 4242 2.941064 GGGCCGGTTAACTCAACTAATC 59.059 50.000 1.90 0.00 37.30 1.75
4005 4250 2.386661 ACTCAACTAATCGTGGCCAG 57.613 50.000 5.11 0.00 0.00 4.85
4040 4285 2.473760 TTGCAACCGGTCACCAACG 61.474 57.895 8.04 0.00 0.00 4.10
4075 4320 2.289072 GCTTCTGAGACAACCTGCAGTA 60.289 50.000 13.81 0.00 0.00 2.74
4091 4338 7.693952 ACCTGCAGTAAAACATATAAACGATG 58.306 34.615 13.81 0.00 0.00 3.84
4118 4365 7.984422 TTTCTTCTTCACAAAGCTCATGATA 57.016 32.000 0.00 0.00 32.18 2.15
4119 4366 6.974932 TCTTCTTCACAAAGCTCATGATAC 57.025 37.500 0.00 0.00 32.18 2.24
4120 4367 6.466812 TCTTCTTCACAAAGCTCATGATACA 58.533 36.000 0.00 0.00 32.18 2.29
4121 4368 7.108194 TCTTCTTCACAAAGCTCATGATACAT 58.892 34.615 0.00 0.00 32.18 2.29
4217 4469 3.814842 TGGATGCACGCATTATTTAGAGG 59.185 43.478 5.89 0.00 36.70 3.69
4218 4470 3.815401 GGATGCACGCATTATTTAGAGGT 59.185 43.478 5.89 0.00 36.70 3.85
4219 4471 4.994852 GGATGCACGCATTATTTAGAGGTA 59.005 41.667 5.89 0.00 36.70 3.08
4257 4509 4.077300 TGATGTTCTATCACTCCCATGC 57.923 45.455 0.00 0.00 0.00 4.06
4376 4666 2.980568 TCCATTTCGAACGCCATACTT 58.019 42.857 0.00 0.00 0.00 2.24
4377 4667 4.126208 TCCATTTCGAACGCCATACTTA 57.874 40.909 0.00 0.00 0.00 2.24
4378 4668 4.699637 TCCATTTCGAACGCCATACTTAT 58.300 39.130 0.00 0.00 0.00 1.73
4379 4669 5.120399 TCCATTTCGAACGCCATACTTATT 58.880 37.500 0.00 0.00 0.00 1.40
4380 4670 5.587043 TCCATTTCGAACGCCATACTTATTT 59.413 36.000 0.00 0.00 0.00 1.40
4381 4671 6.094325 TCCATTTCGAACGCCATACTTATTTT 59.906 34.615 0.00 0.00 0.00 1.82
4382 4672 6.750039 CCATTTCGAACGCCATACTTATTTTT 59.250 34.615 0.00 0.00 0.00 1.94
4402 4692 5.464030 TTTTCAAGAGTACGCCTAGAAGT 57.536 39.130 0.00 0.00 0.00 3.01
4403 4693 6.579666 TTTTCAAGAGTACGCCTAGAAGTA 57.420 37.500 0.00 0.00 0.00 2.24
4404 4694 5.557891 TTCAAGAGTACGCCTAGAAGTAC 57.442 43.478 15.46 15.46 42.42 2.73
4413 4703 7.489574 GTACGCCTAGAAGTACTATGTACTT 57.510 40.000 19.15 19.15 39.86 2.24
4414 4704 7.924940 GTACGCCTAGAAGTACTATGTACTTT 58.075 38.462 19.79 13.64 39.86 2.66
4415 4705 7.401955 ACGCCTAGAAGTACTATGTACTTTT 57.598 36.000 19.79 17.20 37.83 2.27
4416 4706 7.834803 ACGCCTAGAAGTACTATGTACTTTTT 58.165 34.615 19.79 14.81 37.83 1.94
4417 4707 7.972832 ACGCCTAGAAGTACTATGTACTTTTTC 59.027 37.037 19.79 10.70 37.83 2.29
4418 4708 7.165483 CGCCTAGAAGTACTATGTACTTTTTCG 59.835 40.741 19.79 14.85 37.83 3.46
4419 4709 8.186821 GCCTAGAAGTACTATGTACTTTTTCGA 58.813 37.037 19.79 7.33 37.83 3.71
4422 4712 8.445193 AGAAGTACTATGTACTTTTTCGAACG 57.555 34.615 19.79 0.00 37.83 3.95
4423 4713 6.623223 AGTACTATGTACTTTTTCGAACGC 57.377 37.500 0.00 0.00 0.00 4.84
4424 4714 4.916099 ACTATGTACTTTTTCGAACGCC 57.084 40.909 0.00 0.00 0.00 5.68
4425 4715 4.309099 ACTATGTACTTTTTCGAACGCCA 58.691 39.130 0.00 0.00 0.00 5.69
4426 4716 4.933400 ACTATGTACTTTTTCGAACGCCAT 59.067 37.500 0.00 0.00 0.00 4.40
4427 4717 6.101332 ACTATGTACTTTTTCGAACGCCATA 58.899 36.000 0.00 0.00 0.00 2.74
4428 4718 4.650545 TGTACTTTTTCGAACGCCATAC 57.349 40.909 0.00 0.00 0.00 2.39
4429 4719 4.309099 TGTACTTTTTCGAACGCCATACT 58.691 39.130 0.00 0.00 0.00 2.12
4430 4720 4.386652 TGTACTTTTTCGAACGCCATACTC 59.613 41.667 0.00 0.00 0.00 2.59
4697 5017 3.691342 CCGTTCTCCCCGCAGACA 61.691 66.667 0.00 0.00 0.00 3.41
4783 5103 4.932146 ACGTGGAAATGGAAAACTTCTTG 58.068 39.130 0.00 0.00 0.00 3.02
4848 5168 0.037326 GGAGCTGAACGGTGACATGA 60.037 55.000 0.00 0.00 0.00 3.07
4869 5189 0.684535 TGGCCGAGTGTTCTTCATCA 59.315 50.000 0.00 0.00 0.00 3.07
4870 5190 1.278985 TGGCCGAGTGTTCTTCATCAT 59.721 47.619 0.00 0.00 0.00 2.45
4871 5191 1.936547 GGCCGAGTGTTCTTCATCATC 59.063 52.381 0.00 0.00 0.00 2.92
4908 5228 2.820197 GACAATGTCTGTTTCCTTCCCC 59.180 50.000 6.07 0.00 38.84 4.81
5036 5356 8.755977 ACATATTCTCCTTCCGTTCTACTAAAA 58.244 33.333 0.00 0.00 0.00 1.52
5047 5367 8.624701 TCCGTTCTACTAAAATGATCTAAACG 57.375 34.615 0.00 0.00 36.47 3.60
5059 5379 9.774742 AAAATGATCTAAACGCTCTTACATTTC 57.225 29.630 0.00 0.00 35.42 2.17
5062 5382 8.547967 TGATCTAAACGCTCTTACATTTCTTT 57.452 30.769 0.00 0.00 0.00 2.52
5064 5384 9.903185 GATCTAAACGCTCTTACATTTCTTTAC 57.097 33.333 0.00 0.00 0.00 2.01
5068 5388 4.863131 ACGCTCTTACATTTCTTTACGGAG 59.137 41.667 0.00 0.00 0.00 4.63
5069 5389 5.100259 CGCTCTTACATTTCTTTACGGAGA 58.900 41.667 0.00 0.00 0.00 3.71
5074 5394 3.939066 ACATTTCTTTACGGAGAGGGTG 58.061 45.455 0.00 0.00 0.00 4.61
5086 5406 3.949754 CGGAGAGGGTGTAATGTAGTGTA 59.050 47.826 0.00 0.00 0.00 2.90
5268 5594 6.127507 ACGGAGAGAGTATTAAACAGGTTACC 60.128 42.308 0.00 0.00 0.00 2.85
5347 5701 8.853469 TTTTGTAAAATTCGACCGTGTTTAAT 57.147 26.923 0.00 0.00 0.00 1.40
5351 5705 4.336532 AATTCGACCGTGTTTAATGAGC 57.663 40.909 0.00 0.00 0.00 4.26
5352 5706 1.342555 TCGACCGTGTTTAATGAGCG 58.657 50.000 0.00 0.00 0.00 5.03
5432 5861 1.607628 CATACTACTCCCTCCGTTCCG 59.392 57.143 0.00 0.00 0.00 4.30
5650 6092 7.925483 TCTCCATAAACTTGGTCAAAATTTGTG 59.075 33.333 5.56 8.52 38.01 3.33
5682 6296 7.114670 TGACTTTTCAAAACATCAATATGCACG 59.885 33.333 0.00 0.00 36.50 5.34
5702 6316 3.181454 ACGACATTATGGAATGGAGGGAC 60.181 47.826 0.00 0.00 45.83 4.46
5720 6334 6.127730 GGAGGGACTATTGTTTATGTTTGGTG 60.128 42.308 0.00 0.00 41.55 4.17
5724 6338 7.255660 GGGACTATTGTTTATGTTTGGTGTTGA 60.256 37.037 0.00 0.00 0.00 3.18
5779 6393 9.005777 TGGCGTATAAATTCAGTTAAAAAGTCT 57.994 29.630 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 2.664851 CTCTCACAAACGCCGCCA 60.665 61.111 0.00 0.00 0.00 5.69
113 128 3.593442 AAACACCCTCATCCTCACAAA 57.407 42.857 0.00 0.00 0.00 2.83
182 197 7.835181 TGAACTAACCTTTTTCAACCCTAAAGA 59.165 33.333 0.00 0.00 32.03 2.52
237 252 1.927487 TCTGCATGCCACAAATCCTT 58.073 45.000 16.68 0.00 0.00 3.36
306 321 8.347035 TGGTTGGAAAGATACGAAAGTTTTAAG 58.653 33.333 0.00 0.00 46.40 1.85
364 379 4.097286 ACCAAATATATTCACGGGCAACAC 59.903 41.667 0.00 0.00 39.74 3.32
420 435 9.950680 TCAGTTTTTAAGCTTAAAGATTGTGAG 57.049 29.630 28.51 17.33 34.45 3.51
460 479 7.276658 CGTGTGCATTTTCTAAGATCTAGTTCT 59.723 37.037 0.00 0.00 0.00 3.01
481 500 2.903678 CAAAGTCGTTGATTCCGTGTG 58.096 47.619 0.00 0.00 39.87 3.82
484 503 0.511221 CGCAAAGTCGTTGATTCCGT 59.489 50.000 2.40 0.00 39.87 4.69
526 545 4.601794 CCTGCACAGCCCAACCCA 62.602 66.667 0.00 0.00 0.00 4.51
548 582 2.746277 CGGAAACTCTTGGGGGCG 60.746 66.667 0.00 0.00 0.00 6.13
555 589 1.726853 CGATTCTGCCGGAAACTCTT 58.273 50.000 5.05 0.00 37.49 2.85
567 601 5.178797 AGGTGTCAAATCTAACCGATTCTG 58.821 41.667 0.00 0.00 41.42 3.02
573 607 3.124636 CGGAAAGGTGTCAAATCTAACCG 59.875 47.826 0.00 0.00 37.78 4.44
706 745 6.354080 CAAAAACAAATGCAAATGGAGTACG 58.646 36.000 6.99 0.00 0.00 3.67
757 796 2.290464 CCGGCCGTGTTTCCAAATATA 58.710 47.619 26.12 0.00 0.00 0.86
834 876 2.078914 CCGTCGAGTTCGGTTCGTG 61.079 63.158 4.86 0.48 42.62 4.35
913 955 0.468029 ACCTGCACAGTTGGAAAGGG 60.468 55.000 0.00 0.00 0.00 3.95
923 965 1.632948 CTGCGTCATGACCTGCACAG 61.633 60.000 20.33 15.29 33.12 3.66
955 997 1.649390 GCGCTCCACGAGAGAAGAGA 61.649 60.000 0.00 0.00 46.50 3.10
1085 1189 2.728817 CGTCGTAGATGGGAGCCC 59.271 66.667 0.00 0.00 40.43 5.19
1128 1244 0.535328 TCTCCAGATACGCCTCCTCG 60.535 60.000 0.00 0.00 0.00 4.63
1129 1245 1.243902 CTCTCCAGATACGCCTCCTC 58.756 60.000 0.00 0.00 0.00 3.71
1130 1246 0.825840 GCTCTCCAGATACGCCTCCT 60.826 60.000 0.00 0.00 0.00 3.69
1131 1247 1.663173 GCTCTCCAGATACGCCTCC 59.337 63.158 0.00 0.00 0.00 4.30
1132 1248 1.663173 GGCTCTCCAGATACGCCTC 59.337 63.158 0.00 0.00 37.76 4.70
1133 1249 1.231641 AGGCTCTCCAGATACGCCT 59.768 57.895 2.67 2.67 45.70 5.52
1134 1250 1.663173 GAGGCTCTCCAGATACGCC 59.337 63.158 7.40 0.00 40.99 5.68
1135 1251 1.167155 TCGAGGCTCTCCAGATACGC 61.167 60.000 13.50 0.00 33.74 4.42
1136 1252 0.589223 GTCGAGGCTCTCCAGATACG 59.411 60.000 13.50 0.00 33.74 3.06
1469 1603 1.155390 AGACACTCGAGGGGTTCCA 59.845 57.895 20.91 0.00 34.83 3.53
1636 1776 1.742768 GAGATGGGACGAAGCCGAT 59.257 57.895 0.00 0.00 39.50 4.18
1653 1793 2.819595 GCGCCGCATCTTCTTGGA 60.820 61.111 3.15 0.00 0.00 3.53
1654 1794 2.817423 GAGCGCCGCATCTTCTTGG 61.817 63.158 13.36 0.00 0.00 3.61
1695 1835 1.369091 CGAAAGGGCCGATTGGTCTG 61.369 60.000 2.93 0.00 40.80 3.51
1770 1910 0.457035 CTTCCATTGCGGGGAACATG 59.543 55.000 0.00 0.00 39.44 3.21
1786 1926 1.566018 CCGTTGTCGTGCCCTTCTTC 61.566 60.000 0.00 0.00 35.01 2.87
1878 2018 2.362120 GGGAGGCACAGCTGCAAT 60.362 61.111 15.27 0.00 46.28 3.56
1893 2033 2.928334 CAGGGTTCATCAGATCTTGGG 58.072 52.381 0.00 0.00 0.00 4.12
1934 2074 0.389948 TTCTTCTTCTTCTCCGCCGC 60.390 55.000 0.00 0.00 0.00 6.53
1935 2075 1.202582 TCTTCTTCTTCTTCTCCGCCG 59.797 52.381 0.00 0.00 0.00 6.46
1936 2076 3.056465 TCTTCTTCTTCTTCTTCTCCGCC 60.056 47.826 0.00 0.00 0.00 6.13
1937 2077 4.173256 CTCTTCTTCTTCTTCTTCTCCGC 58.827 47.826 0.00 0.00 0.00 5.54
1941 2081 3.056179 CGCCCTCTTCTTCTTCTTCTTCT 60.056 47.826 0.00 0.00 0.00 2.85
1965 2108 0.402121 AGAACTTGGGCAGGGAGAAC 59.598 55.000 0.00 0.00 0.00 3.01
2247 2390 2.282958 TGGAGGACGGCGTTCTCT 60.283 61.111 38.55 24.92 38.20 3.10
2659 2802 7.377766 TGACAGGAAATTAACAGAGCATAAC 57.622 36.000 0.00 0.00 0.00 1.89
2754 2899 7.342799 ACAATGATAGTTGTGCCCTGATAAATT 59.657 33.333 0.00 0.00 40.60 1.82
2758 2903 5.104569 TGACAATGATAGTTGTGCCCTGATA 60.105 40.000 0.00 0.00 42.08 2.15
2766 2911 7.982224 ACATGAAGATGACAATGATAGTTGTG 58.018 34.615 0.00 0.00 42.08 3.33
2768 2913 9.499585 GAAACATGAAGATGACAATGATAGTTG 57.500 33.333 0.00 0.00 33.36 3.16
2848 2998 7.043258 ACGTTTGAATACGAAATATATGCACGA 60.043 33.333 2.93 0.00 43.99 4.35
2890 3040 2.225963 GTCATCCGAATCCGACGATACT 59.774 50.000 0.00 0.00 38.22 2.12
2891 3041 2.225963 AGTCATCCGAATCCGACGATAC 59.774 50.000 0.00 0.00 38.22 2.24
2892 3042 2.501261 AGTCATCCGAATCCGACGATA 58.499 47.619 0.00 0.00 38.22 2.92
2893 3043 1.319541 AGTCATCCGAATCCGACGAT 58.680 50.000 0.00 0.00 38.22 3.73
2894 3044 1.871676 CTAGTCATCCGAATCCGACGA 59.128 52.381 0.00 0.00 38.22 4.20
2895 3045 1.069159 CCTAGTCATCCGAATCCGACG 60.069 57.143 0.00 0.00 38.22 5.12
2896 3046 2.228059 TCCTAGTCATCCGAATCCGAC 58.772 52.381 0.00 0.00 38.22 4.79
2897 3047 2.651382 TCCTAGTCATCCGAATCCGA 57.349 50.000 0.00 0.00 38.22 4.55
2898 3048 3.728076 TTTCCTAGTCATCCGAATCCG 57.272 47.619 0.00 0.00 0.00 4.18
2899 3049 6.936279 TGATATTTCCTAGTCATCCGAATCC 58.064 40.000 0.00 0.00 0.00 3.01
2900 3050 8.713271 GTTTGATATTTCCTAGTCATCCGAATC 58.287 37.037 0.00 0.00 0.00 2.52
2901 3051 7.661847 GGTTTGATATTTCCTAGTCATCCGAAT 59.338 37.037 0.00 0.00 0.00 3.34
2902 3052 6.990349 GGTTTGATATTTCCTAGTCATCCGAA 59.010 38.462 0.00 0.00 0.00 4.30
2994 3144 2.100584 TGTGGGTTGTTGTTGAAGATGC 59.899 45.455 0.00 0.00 0.00 3.91
3005 3155 1.960689 CGAGGGAATTTGTGGGTTGTT 59.039 47.619 0.00 0.00 0.00 2.83
3008 3158 2.899303 ATCGAGGGAATTTGTGGGTT 57.101 45.000 0.00 0.00 0.00 4.11
3058 3208 8.981724 TGTATCAGTGTTATCAGTGTTTAGAC 57.018 34.615 8.19 0.00 43.31 2.59
3060 3210 8.251026 TCCTGTATCAGTGTTATCAGTGTTTAG 58.749 37.037 8.19 4.29 43.31 1.85
3061 3211 8.129496 TCCTGTATCAGTGTTATCAGTGTTTA 57.871 34.615 8.19 1.08 43.31 2.01
3062 3212 7.004555 TCCTGTATCAGTGTTATCAGTGTTT 57.995 36.000 8.19 1.85 43.31 2.83
3063 3213 6.605471 TCCTGTATCAGTGTTATCAGTGTT 57.395 37.500 8.19 3.68 43.31 3.32
3064 3214 5.394663 GCTCCTGTATCAGTGTTATCAGTGT 60.395 44.000 8.19 0.60 43.31 3.55
3065 3215 5.046529 GCTCCTGTATCAGTGTTATCAGTG 58.953 45.833 2.66 2.66 43.96 3.66
3066 3216 4.100189 GGCTCCTGTATCAGTGTTATCAGT 59.900 45.833 0.00 0.00 0.00 3.41
3067 3217 4.626042 GGCTCCTGTATCAGTGTTATCAG 58.374 47.826 0.00 0.00 0.00 2.90
3068 3218 3.068165 CGGCTCCTGTATCAGTGTTATCA 59.932 47.826 0.00 0.00 0.00 2.15
3069 3219 3.553096 CCGGCTCCTGTATCAGTGTTATC 60.553 52.174 0.00 0.00 0.00 1.75
3070 3220 2.365617 CCGGCTCCTGTATCAGTGTTAT 59.634 50.000 0.00 0.00 0.00 1.89
3071 3221 1.754803 CCGGCTCCTGTATCAGTGTTA 59.245 52.381 0.00 0.00 0.00 2.41
3072 3222 0.537188 CCGGCTCCTGTATCAGTGTT 59.463 55.000 0.00 0.00 0.00 3.32
3106 3256 6.318144 ACACAATTGTTTTCAAATGGATGCAA 59.682 30.769 8.77 0.00 42.90 4.08
3107 3257 5.821470 ACACAATTGTTTTCAAATGGATGCA 59.179 32.000 8.77 0.00 42.90 3.96
3155 3305 3.226347 CGAAGAACGTTTGAGATTTGGC 58.774 45.455 0.46 0.00 37.22 4.52
3172 3322 1.132262 ACCAACACAAGCAACACGAAG 59.868 47.619 0.00 0.00 0.00 3.79
3234 3384 2.227194 ACACCCAATTGAACGGAAGAC 58.773 47.619 7.12 0.00 0.00 3.01
3235 3385 2.649531 ACACCCAATTGAACGGAAGA 57.350 45.000 7.12 0.00 0.00 2.87
3294 3444 0.462225 TGAACGGAAGGTGTTTCGCA 60.462 50.000 0.00 0.00 36.62 5.10
3308 3458 2.095853 GTGGAAGGTGTGCATATGAACG 59.904 50.000 6.97 0.00 0.00 3.95
3314 3464 2.666272 TTTGGTGGAAGGTGTGCATA 57.334 45.000 0.00 0.00 0.00 3.14
3328 3478 9.045745 ACATAATTGAATGGAAGGTATTTTGGT 57.954 29.630 0.00 0.00 0.00 3.67
3330 3480 9.874205 ACACATAATTGAATGGAAGGTATTTTG 57.126 29.630 0.00 0.00 0.00 2.44
3370 3520 8.422566 GGAAGGTGTATATTAGTGAGCTTACTT 58.577 37.037 17.16 2.10 32.19 2.24
3371 3521 7.255520 CGGAAGGTGTATATTAGTGAGCTTACT 60.256 40.741 16.17 16.17 34.71 2.24
3372 3522 6.862090 CGGAAGGTGTATATTAGTGAGCTTAC 59.138 42.308 0.00 0.00 0.00 2.34
3373 3523 6.516194 GCGGAAGGTGTATATTAGTGAGCTTA 60.516 42.308 0.00 0.00 0.00 3.09
3374 3524 5.739358 GCGGAAGGTGTATATTAGTGAGCTT 60.739 44.000 0.00 0.00 0.00 3.74
3375 3525 4.262079 GCGGAAGGTGTATATTAGTGAGCT 60.262 45.833 0.00 0.00 0.00 4.09
3376 3526 3.988517 GCGGAAGGTGTATATTAGTGAGC 59.011 47.826 0.00 0.00 0.00 4.26
3377 3527 4.038763 TGGCGGAAGGTGTATATTAGTGAG 59.961 45.833 0.00 0.00 0.00 3.51
3378 3528 3.962063 TGGCGGAAGGTGTATATTAGTGA 59.038 43.478 0.00 0.00 0.00 3.41
3379 3529 4.330944 TGGCGGAAGGTGTATATTAGTG 57.669 45.455 0.00 0.00 0.00 2.74
3380 3530 5.121105 GTTTGGCGGAAGGTGTATATTAGT 58.879 41.667 0.00 0.00 0.00 2.24
3381 3531 5.007332 GTGTTTGGCGGAAGGTGTATATTAG 59.993 44.000 0.00 0.00 0.00 1.73
3382 3532 4.877251 GTGTTTGGCGGAAGGTGTATATTA 59.123 41.667 0.00 0.00 0.00 0.98
3383 3533 3.692593 GTGTTTGGCGGAAGGTGTATATT 59.307 43.478 0.00 0.00 0.00 1.28
3384 3534 3.275999 GTGTTTGGCGGAAGGTGTATAT 58.724 45.455 0.00 0.00 0.00 0.86
3385 3535 2.616001 GGTGTTTGGCGGAAGGTGTATA 60.616 50.000 0.00 0.00 0.00 1.47
3386 3536 1.530323 GTGTTTGGCGGAAGGTGTAT 58.470 50.000 0.00 0.00 0.00 2.29
3387 3537 0.535553 GGTGTTTGGCGGAAGGTGTA 60.536 55.000 0.00 0.00 0.00 2.90
3388 3538 1.826487 GGTGTTTGGCGGAAGGTGT 60.826 57.895 0.00 0.00 0.00 4.16
3389 3539 1.528309 AGGTGTTTGGCGGAAGGTG 60.528 57.895 0.00 0.00 0.00 4.00
3390 3540 1.528309 CAGGTGTTTGGCGGAAGGT 60.528 57.895 0.00 0.00 0.00 3.50
3391 3541 1.106944 AACAGGTGTTTGGCGGAAGG 61.107 55.000 0.00 0.00 33.93 3.46
3392 3542 1.265905 GTAACAGGTGTTTGGCGGAAG 59.734 52.381 0.00 0.00 39.31 3.46
3393 3543 1.310904 GTAACAGGTGTTTGGCGGAA 58.689 50.000 0.00 0.00 39.31 4.30
3394 3544 0.535553 GGTAACAGGTGTTTGGCGGA 60.536 55.000 0.00 0.00 39.31 5.54
3395 3545 0.536460 AGGTAACAGGTGTTTGGCGG 60.536 55.000 0.00 0.00 39.31 6.13
3396 3546 1.265905 GAAGGTAACAGGTGTTTGGCG 59.734 52.381 0.00 0.00 39.31 5.69
3397 3547 1.611977 GGAAGGTAACAGGTGTTTGGC 59.388 52.381 0.00 0.00 39.31 4.52
3398 3548 1.877443 CGGAAGGTAACAGGTGTTTGG 59.123 52.381 0.00 0.00 39.31 3.28
3399 3549 2.567985 ACGGAAGGTAACAGGTGTTTG 58.432 47.619 0.00 0.00 39.31 2.93
3400 3550 3.208594 GAACGGAAGGTAACAGGTGTTT 58.791 45.455 0.00 0.00 39.31 2.83
3401 3551 2.171027 TGAACGGAAGGTAACAGGTGTT 59.829 45.455 0.24 0.24 41.73 3.32
3402 3552 1.764134 TGAACGGAAGGTAACAGGTGT 59.236 47.619 0.00 0.00 41.41 4.16
3403 3553 2.536761 TGAACGGAAGGTAACAGGTG 57.463 50.000 0.00 0.00 41.41 4.00
3404 3554 3.782656 ATTGAACGGAAGGTAACAGGT 57.217 42.857 0.00 0.00 41.41 4.00
3405 3555 3.818773 ACAATTGAACGGAAGGTAACAGG 59.181 43.478 13.59 0.00 41.41 4.00
3406 3556 4.274950 ACACAATTGAACGGAAGGTAACAG 59.725 41.667 13.59 0.00 41.41 3.16
3407 3557 4.035792 CACACAATTGAACGGAAGGTAACA 59.964 41.667 13.59 0.00 41.41 2.41
3408 3558 4.035909 ACACACAATTGAACGGAAGGTAAC 59.964 41.667 13.59 0.00 0.00 2.50
3409 3559 4.200874 ACACACAATTGAACGGAAGGTAA 58.799 39.130 13.59 0.00 0.00 2.85
3410 3560 3.810941 GACACACAATTGAACGGAAGGTA 59.189 43.478 13.59 0.00 0.00 3.08
3411 3561 2.616842 GACACACAATTGAACGGAAGGT 59.383 45.455 13.59 0.00 0.00 3.50
3412 3562 2.616376 TGACACACAATTGAACGGAAGG 59.384 45.455 13.59 0.00 0.00 3.46
3413 3563 3.312421 ACTGACACACAATTGAACGGAAG 59.688 43.478 13.59 5.52 0.00 3.46
3414 3564 3.275143 ACTGACACACAATTGAACGGAA 58.725 40.909 13.59 0.00 0.00 4.30
3415 3565 2.912771 ACTGACACACAATTGAACGGA 58.087 42.857 13.59 0.00 0.00 4.69
3416 3566 4.804608 TTACTGACACACAATTGAACGG 57.195 40.909 13.59 6.02 0.00 4.44
3417 3567 8.775220 TTATTTTACTGACACACAATTGAACG 57.225 30.769 13.59 2.59 0.00 3.95
3464 3614 1.106944 AAGGTGTTTGGCGGAAGGTG 61.107 55.000 0.00 0.00 0.00 4.00
3471 3621 1.281656 GAACGGAAGGTGTTTGGCG 59.718 57.895 0.00 0.00 0.00 5.69
3478 3628 0.238289 GTGCATGTGAACGGAAGGTG 59.762 55.000 0.00 0.00 0.00 4.00
3479 3629 0.179032 TGTGCATGTGAACGGAAGGT 60.179 50.000 0.00 0.00 0.00 3.50
3480 3630 0.238289 GTGTGCATGTGAACGGAAGG 59.762 55.000 0.00 0.00 0.00 3.46
3481 3631 0.238289 GGTGTGCATGTGAACGGAAG 59.762 55.000 0.00 0.00 0.00 3.46
3482 3632 0.179032 AGGTGTGCATGTGAACGGAA 60.179 50.000 0.00 0.00 0.00 4.30
3568 3718 2.206750 CGAAAGGTGTTTGACGGAAGA 58.793 47.619 0.00 0.00 0.00 2.87
3575 3725 3.488384 GCATGTGAACGAAAGGTGTTTGA 60.488 43.478 0.00 0.00 0.00 2.69
3586 3736 1.674359 AAAGGTGTGCATGTGAACGA 58.326 45.000 0.00 0.00 0.00 3.85
3594 3744 1.209019 TGTTTGGCAAAAGGTGTGCAT 59.791 42.857 15.29 0.00 44.07 3.96
3599 3749 2.971307 ACAAGTGTTTGGCAAAAGGTG 58.029 42.857 15.29 12.46 38.66 4.00
3605 3755 6.892658 ATTAGTCATACAAGTGTTTGGCAA 57.107 33.333 8.79 0.00 38.66 4.52
3606 3756 7.987750 TTATTAGTCATACAAGTGTTTGGCA 57.012 32.000 8.79 0.00 38.66 4.92
3705 3950 2.234661 GAGTCTGGACATCCACATGACA 59.765 50.000 16.76 0.00 42.01 3.58
3728 3973 5.885912 GGAGACAAATATGGGAAGCTTTGTA 59.114 40.000 0.00 0.00 40.76 2.41
3729 3974 4.706962 GGAGACAAATATGGGAAGCTTTGT 59.293 41.667 0.00 0.00 42.71 2.83
3730 3975 4.706476 TGGAGACAAATATGGGAAGCTTTG 59.294 41.667 0.00 0.00 37.44 2.77
3751 3996 2.288458 TCACGCTTTTTCGGTAAACTGG 59.712 45.455 0.00 0.00 0.00 4.00
3758 4003 1.644913 CGGTTCACGCTTTTTCGGT 59.355 52.632 0.00 0.00 34.82 4.69
3761 4006 0.040692 GGTCCGGTTCACGCTTTTTC 60.041 55.000 0.00 0.00 42.52 2.29
3784 4029 0.745468 GATCCTATATCGGTCCGCCC 59.255 60.000 6.34 0.00 0.00 6.13
3785 4030 1.134560 GTGATCCTATATCGGTCCGCC 59.865 57.143 6.34 0.00 0.00 6.13
3786 4031 1.202154 CGTGATCCTATATCGGTCCGC 60.202 57.143 6.34 0.00 0.00 5.54
3789 4034 3.504906 TCCAACGTGATCCTATATCGGTC 59.495 47.826 0.00 0.00 0.00 4.79
3790 4035 3.493334 TCCAACGTGATCCTATATCGGT 58.507 45.455 0.00 0.00 0.00 4.69
3791 4036 4.157840 TCATCCAACGTGATCCTATATCGG 59.842 45.833 0.00 0.00 0.00 4.18
3793 4038 6.025749 TGTCATCCAACGTGATCCTATATC 57.974 41.667 0.00 0.00 0.00 1.63
3794 4039 6.419484 TTGTCATCCAACGTGATCCTATAT 57.581 37.500 0.00 0.00 0.00 0.86
3795 4040 5.862678 TTGTCATCCAACGTGATCCTATA 57.137 39.130 0.00 0.00 0.00 1.31
3797 4042 4.020573 AGTTTGTCATCCAACGTGATCCTA 60.021 41.667 0.00 0.00 31.20 2.94
3798 4043 3.074412 GTTTGTCATCCAACGTGATCCT 58.926 45.455 0.00 0.00 31.20 3.24
3800 4045 3.498397 ACAGTTTGTCATCCAACGTGATC 59.502 43.478 0.00 0.00 31.20 2.92
3801 4046 3.250762 CACAGTTTGTCATCCAACGTGAT 59.749 43.478 0.00 0.00 31.20 3.06
3802 4047 2.611751 CACAGTTTGTCATCCAACGTGA 59.388 45.455 0.00 0.00 31.20 4.35
3803 4048 2.354510 ACACAGTTTGTCATCCAACGTG 59.645 45.455 0.00 0.00 29.79 4.49
3804 4049 2.639065 ACACAGTTTGTCATCCAACGT 58.361 42.857 0.00 0.00 29.79 3.99
3819 4064 0.808453 ACCACGTTGTTCGGACACAG 60.808 55.000 0.00 0.00 44.69 3.66
3828 4073 2.279650 CGTCCGGACCACGTTGTT 60.280 61.111 28.52 0.00 42.24 2.83
3832 4077 4.657824 CAAGCGTCCGGACCACGT 62.658 66.667 28.52 16.17 42.24 4.49
3844 4089 1.270777 CCGCAAAACTCTTGCAAGCG 61.271 55.000 21.99 18.30 45.14 4.68
3851 4096 0.883370 GACGGACCCGCAAAACTCTT 60.883 55.000 8.55 0.00 44.19 2.85
3852 4097 1.301479 GACGGACCCGCAAAACTCT 60.301 57.895 8.55 0.00 44.19 3.24
3856 4101 0.464013 TTCAAGACGGACCCGCAAAA 60.464 50.000 8.55 0.00 44.19 2.44
3861 4106 1.084370 GCATCTTCAAGACGGACCCG 61.084 60.000 6.94 6.94 46.03 5.28
3874 4119 4.803329 AATGATGTCCTTAGGGCATCTT 57.197 40.909 36.03 29.78 41.85 2.40
3901 4146 8.484641 TTCTCATTTTGCAATAACAACAACAA 57.515 26.923 0.00 0.00 0.00 2.83
3904 4149 8.939201 TCTTTCTCATTTTGCAATAACAACAA 57.061 26.923 0.00 0.00 0.00 2.83
3924 4169 6.575162 AACAACACCATACCAGATTCTTTC 57.425 37.500 0.00 0.00 0.00 2.62
3933 4178 6.926272 GCTTATTGAAAAACAACACCATACCA 59.074 34.615 0.00 0.00 41.52 3.25
3938 4183 5.809562 CACAGCTTATTGAAAAACAACACCA 59.190 36.000 0.00 0.00 41.52 4.17
3965 4210 5.451354 AGTTAACCGGCCCAAACAATATAT 58.549 37.500 0.00 0.00 0.00 0.86
3966 4211 4.857679 AGTTAACCGGCCCAAACAATATA 58.142 39.130 0.00 0.00 0.00 0.86
3967 4212 3.697542 GAGTTAACCGGCCCAAACAATAT 59.302 43.478 0.00 0.00 0.00 1.28
3976 4221 2.477845 TTAGTTGAGTTAACCGGCCC 57.522 50.000 0.00 0.00 40.24 5.80
3992 4237 1.959042 ATCAAGCTGGCCACGATTAG 58.041 50.000 0.00 0.00 0.00 1.73
3994 4239 0.813184 CAATCAAGCTGGCCACGATT 59.187 50.000 0.00 5.20 0.00 3.34
3997 4242 1.526575 AACCAATCAAGCTGGCCACG 61.527 55.000 0.00 0.00 37.48 4.94
4005 4250 3.976169 TGCAACTTGTAACCAATCAAGC 58.024 40.909 5.06 0.00 43.05 4.01
4040 4285 4.110482 CTCAGAAGCTAAAAATGGCATGC 58.890 43.478 9.90 9.90 0.00 4.06
4091 4338 6.974622 TCATGAGCTTTGTGAAGAAGAAAAAC 59.025 34.615 0.00 0.00 34.71 2.43
4189 4441 6.740411 AAATAATGCGTGCATCCAATTTTT 57.260 29.167 7.94 0.00 35.31 1.94
4193 4445 5.048504 CCTCTAAATAATGCGTGCATCCAAT 60.049 40.000 7.94 0.09 35.31 3.16
4198 4450 5.611374 ACTACCTCTAAATAATGCGTGCAT 58.389 37.500 0.51 0.51 38.46 3.96
4235 4487 4.164796 AGCATGGGAGTGATAGAACATCAA 59.835 41.667 0.00 0.00 0.00 2.57
4349 4639 4.667262 TGGCGTTCGAAATGGAAAATATG 58.333 39.130 0.00 0.00 0.00 1.78
4357 4647 5.418310 AATAAGTATGGCGTTCGAAATGG 57.582 39.130 0.00 0.00 0.00 3.16
4379 4669 5.850614 ACTTCTAGGCGTACTCTTGAAAAA 58.149 37.500 9.67 0.00 0.00 1.94
4380 4670 5.464030 ACTTCTAGGCGTACTCTTGAAAA 57.536 39.130 9.67 0.00 0.00 2.29
4381 4671 5.709164 AGTACTTCTAGGCGTACTCTTGAAA 59.291 40.000 15.08 0.00 41.71 2.69
4382 4672 5.251764 AGTACTTCTAGGCGTACTCTTGAA 58.748 41.667 15.08 8.65 41.71 2.69
4383 4673 4.841422 AGTACTTCTAGGCGTACTCTTGA 58.159 43.478 15.08 0.00 41.71 3.02
4384 4674 6.260493 ACATAGTACTTCTAGGCGTACTCTTG 59.740 42.308 20.79 20.10 43.69 3.02
4385 4675 6.355747 ACATAGTACTTCTAGGCGTACTCTT 58.644 40.000 20.79 11.92 43.69 2.85
4386 4676 5.927819 ACATAGTACTTCTAGGCGTACTCT 58.072 41.667 20.79 13.01 43.69 3.24
4387 4677 6.928492 AGTACATAGTACTTCTAGGCGTACTC 59.072 42.308 20.79 11.33 43.69 2.59
4388 4678 6.825610 AGTACATAGTACTTCTAGGCGTACT 58.174 40.000 20.90 20.90 45.82 2.73
4389 4679 7.489574 AAGTACATAGTACTTCTAGGCGTAC 57.510 40.000 14.87 11.99 34.24 3.67
4390 4680 8.511604 AAAAGTACATAGTACTTCTAGGCGTA 57.488 34.615 19.37 0.00 36.82 4.42
4391 4681 7.401955 AAAAGTACATAGTACTTCTAGGCGT 57.598 36.000 19.37 3.47 36.82 5.68
4392 4682 7.165483 CGAAAAAGTACATAGTACTTCTAGGCG 59.835 40.741 19.37 15.01 36.82 5.52
4393 4683 8.186821 TCGAAAAAGTACATAGTACTTCTAGGC 58.813 37.037 19.37 9.33 36.82 3.93
4396 4686 9.546909 CGTTCGAAAAAGTACATAGTACTTCTA 57.453 33.333 19.37 1.65 36.82 2.10
4397 4687 7.061557 GCGTTCGAAAAAGTACATAGTACTTCT 59.938 37.037 19.37 11.80 36.82 2.85
4398 4688 7.162898 GCGTTCGAAAAAGTACATAGTACTTC 58.837 38.462 19.37 9.34 36.82 3.01
4399 4689 6.089954 GGCGTTCGAAAAAGTACATAGTACTT 59.910 38.462 14.87 14.87 39.24 2.24
4400 4690 5.574443 GGCGTTCGAAAAAGTACATAGTACT 59.426 40.000 0.00 0.00 0.00 2.73
4401 4691 5.345741 TGGCGTTCGAAAAAGTACATAGTAC 59.654 40.000 0.00 0.00 0.00 2.73
4402 4692 5.468592 TGGCGTTCGAAAAAGTACATAGTA 58.531 37.500 0.00 0.00 0.00 1.82
4403 4693 4.309099 TGGCGTTCGAAAAAGTACATAGT 58.691 39.130 0.00 0.00 0.00 2.12
4404 4694 4.914312 TGGCGTTCGAAAAAGTACATAG 57.086 40.909 0.00 0.00 0.00 2.23
4405 4695 6.101332 AGTATGGCGTTCGAAAAAGTACATA 58.899 36.000 0.00 5.87 0.00 2.29
4406 4696 4.933400 AGTATGGCGTTCGAAAAAGTACAT 59.067 37.500 0.00 6.73 0.00 2.29
4407 4697 4.309099 AGTATGGCGTTCGAAAAAGTACA 58.691 39.130 0.00 0.00 0.00 2.90
4408 4698 4.386652 TGAGTATGGCGTTCGAAAAAGTAC 59.613 41.667 0.00 0.38 0.00 2.73
4409 4699 4.386652 GTGAGTATGGCGTTCGAAAAAGTA 59.613 41.667 0.00 0.00 0.00 2.24
4410 4700 3.185797 GTGAGTATGGCGTTCGAAAAAGT 59.814 43.478 0.00 0.00 0.00 2.66
4411 4701 3.432252 AGTGAGTATGGCGTTCGAAAAAG 59.568 43.478 0.00 0.00 0.00 2.27
4412 4702 3.185594 CAGTGAGTATGGCGTTCGAAAAA 59.814 43.478 0.00 0.00 0.00 1.94
4413 4703 2.734606 CAGTGAGTATGGCGTTCGAAAA 59.265 45.455 0.00 0.00 0.00 2.29
4414 4704 2.029739 TCAGTGAGTATGGCGTTCGAAA 60.030 45.455 0.00 0.00 0.00 3.46
4415 4705 1.542472 TCAGTGAGTATGGCGTTCGAA 59.458 47.619 0.00 0.00 0.00 3.71
4416 4706 1.170442 TCAGTGAGTATGGCGTTCGA 58.830 50.000 0.00 0.00 0.00 3.71
4417 4707 1.654105 GTTCAGTGAGTATGGCGTTCG 59.346 52.381 0.00 0.00 0.00 3.95
4418 4708 2.924290 GAGTTCAGTGAGTATGGCGTTC 59.076 50.000 0.00 0.00 0.00 3.95
4419 4709 2.563179 AGAGTTCAGTGAGTATGGCGTT 59.437 45.455 0.00 0.00 0.00 4.84
4420 4710 2.171840 AGAGTTCAGTGAGTATGGCGT 58.828 47.619 0.00 0.00 0.00 5.68
4421 4711 2.949451 AGAGTTCAGTGAGTATGGCG 57.051 50.000 0.00 0.00 0.00 5.69
4422 4712 4.757149 ACAAAAGAGTTCAGTGAGTATGGC 59.243 41.667 0.00 0.00 0.00 4.40
4423 4713 5.334414 GCACAAAAGAGTTCAGTGAGTATGG 60.334 44.000 0.00 0.00 32.14 2.74
4424 4714 5.468072 AGCACAAAAGAGTTCAGTGAGTATG 59.532 40.000 0.00 0.00 32.14 2.39
4425 4715 5.468072 CAGCACAAAAGAGTTCAGTGAGTAT 59.532 40.000 0.00 0.00 32.14 2.12
4426 4716 4.811024 CAGCACAAAAGAGTTCAGTGAGTA 59.189 41.667 0.00 0.00 32.14 2.59
4427 4717 3.624861 CAGCACAAAAGAGTTCAGTGAGT 59.375 43.478 0.00 0.00 32.14 3.41
4428 4718 3.873361 TCAGCACAAAAGAGTTCAGTGAG 59.127 43.478 0.00 0.00 32.14 3.51
4429 4719 3.872696 TCAGCACAAAAGAGTTCAGTGA 58.127 40.909 0.00 0.00 32.14 3.41
4430 4720 4.497006 CCTTCAGCACAAAAGAGTTCAGTG 60.497 45.833 0.00 0.00 0.00 3.66
4658 4948 1.364626 GGCAGCCTGTTCATGACGAG 61.365 60.000 3.29 0.00 0.00 4.18
4722 5042 3.499737 GCTGGTGAATGCCGTCGG 61.500 66.667 6.99 6.99 0.00 4.79
4755 5075 0.037590 TTCCATTTCCACGTCTGGGG 59.962 55.000 0.00 0.00 38.25 4.96
4783 5103 3.308438 TCGAACCAAGCCAACTAGTAC 57.692 47.619 0.00 0.00 0.00 2.73
4848 5168 0.687354 ATGAAGAACACTCGGCCACT 59.313 50.000 2.24 0.00 0.00 4.00
4869 5189 6.554228 ACATTGTCATCATCTACCAGAGAGAT 59.446 38.462 0.00 0.00 37.70 2.75
4870 5190 5.896106 ACATTGTCATCATCTACCAGAGAGA 59.104 40.000 0.00 0.00 37.70 3.10
4871 5191 6.040729 AGACATTGTCATCATCTACCAGAGAG 59.959 42.308 18.57 0.00 34.43 3.20
4908 5228 9.579768 TTGTATAAAATTCATCAAATCCCAACG 57.420 29.630 0.00 0.00 0.00 4.10
4999 5319 4.989277 AGGAGAATATGTGGCATGCAATA 58.011 39.130 21.36 13.97 0.00 1.90
5000 5320 3.840991 AGGAGAATATGTGGCATGCAAT 58.159 40.909 21.36 12.16 0.00 3.56
5001 5321 3.301794 AGGAGAATATGTGGCATGCAA 57.698 42.857 21.36 4.92 0.00 4.08
5002 5322 3.216800 GAAGGAGAATATGTGGCATGCA 58.783 45.455 21.36 2.54 0.00 3.96
5003 5323 2.555757 GGAAGGAGAATATGTGGCATGC 59.444 50.000 9.90 9.90 0.00 4.06
5036 5356 8.723942 AAGAAATGTAAGAGCGTTTAGATCAT 57.276 30.769 0.00 0.00 37.82 2.45
5047 5367 5.520649 CCTCTCCGTAAAGAAATGTAAGAGC 59.479 44.000 0.00 0.00 0.00 4.09
5059 5379 4.467198 ACATTACACCCTCTCCGTAAAG 57.533 45.455 0.00 0.00 0.00 1.85
5062 5382 3.949754 CACTACATTACACCCTCTCCGTA 59.050 47.826 0.00 0.00 0.00 4.02
5064 5384 2.758979 ACACTACATTACACCCTCTCCG 59.241 50.000 0.00 0.00 0.00 4.63
5243 5569 5.997384 AACCTGTTTAATACTCTCTCCGT 57.003 39.130 0.00 0.00 0.00 4.69
5268 5594 3.749088 TCACCTAAACTAAACATGCACCG 59.251 43.478 0.00 0.00 0.00 4.94
5327 5681 6.308675 GCTCATTAAACACGGTCGAATTTTA 58.691 36.000 0.00 0.00 0.00 1.52
5410 5764 2.885894 GGAACGGAGGGAGTAGTATGAG 59.114 54.545 0.00 0.00 0.00 2.90
5673 6115 6.003326 TCCATTCCATAATGTCGTGCATATT 58.997 36.000 0.00 0.00 40.84 1.28
5682 6296 4.713792 AGTCCCTCCATTCCATAATGTC 57.286 45.455 0.00 0.00 40.84 3.06
5702 6316 9.912634 ATCTTCAACACCAAACATAAACAATAG 57.087 29.630 0.00 0.00 0.00 1.73
5720 6334 6.127675 GGGGACGGAGATAGTATATCTTCAAC 60.128 46.154 4.84 0.10 0.00 3.18
5724 6338 5.531753 TGGGGACGGAGATAGTATATCTT 57.468 43.478 4.84 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.