Multiple sequence alignment - TraesCS5A01G215400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G215400 chr5A 100.000 4202 0 0 1 4202 430959621 430955420 0.000000e+00 7760.0
1 TraesCS5A01G215400 chr5A 87.866 1467 128 30 2448 3891 431029498 431028059 0.000000e+00 1677.0
2 TraesCS5A01G215400 chr5A 87.616 1187 130 10 2262 3437 430507011 430505831 0.000000e+00 1362.0
3 TraesCS5A01G215400 chr5A 86.968 729 69 16 931 1634 430508526 430507799 0.000000e+00 797.0
4 TraesCS5A01G215400 chr5A 92.292 506 33 4 931 1430 431045162 431044657 0.000000e+00 713.0
5 TraesCS5A01G215400 chr5A 83.511 655 67 21 1632 2251 430507702 430507054 1.310000e-159 573.0
6 TraesCS5A01G215400 chr5A 89.011 455 44 4 1644 2094 431029994 431029542 3.670000e-155 558.0
7 TraesCS5A01G215400 chr5A 83.294 419 24 13 431 832 431045705 431045316 1.120000e-90 344.0
8 TraesCS5A01G215400 chr5A 95.333 150 7 0 1470 1619 423680883 423681032 5.430000e-59 239.0
9 TraesCS5A01G215400 chr5A 84.783 184 11 5 259 434 431047618 431047444 7.230000e-38 169.0
10 TraesCS5A01G215400 chr5A 90.566 53 4 1 1596 1648 431030128 431030077 7.540000e-08 69.4
11 TraesCS5A01G215400 chr5B 89.922 1786 158 13 1677 3450 378069142 378070917 0.000000e+00 2281.0
12 TraesCS5A01G215400 chr5B 84.387 1883 202 46 1632 3437 378511321 378513188 0.000000e+00 1764.0
13 TraesCS5A01G215400 chr5B 94.043 705 38 3 2436 3137 377979601 377980304 0.000000e+00 1066.0
14 TraesCS5A01G215400 chr5B 83.414 1037 83 49 669 1622 377977820 377978850 0.000000e+00 880.0
15 TraesCS5A01G215400 chr5B 88.356 730 58 9 931 1634 378510493 378511221 0.000000e+00 852.0
16 TraesCS5A01G215400 chr5B 89.070 613 42 11 840 1428 378068136 378068747 0.000000e+00 737.0
17 TraesCS5A01G215400 chr5B 87.140 521 54 11 3173 3690 377980301 377980811 2.820000e-161 579.0
18 TraesCS5A01G215400 chr5B 85.429 501 53 14 1136 1619 377698698 377699195 1.740000e-138 503.0
19 TraesCS5A01G215400 chr5B 87.711 415 22 9 429 832 378067699 378068095 1.380000e-124 457.0
20 TraesCS5A01G215400 chr5B 85.533 394 31 16 60 434 378035211 378035597 5.090000e-104 388.0
21 TraesCS5A01G215400 chr5B 85.379 383 39 10 60 431 377974754 377975130 8.530000e-102 381.0
22 TraesCS5A01G215400 chr5B 96.809 188 6 0 1435 1622 378068790 378068977 8.770000e-82 315.0
23 TraesCS5A01G215400 chr5B 89.873 79 8 0 3620 3698 103475210 103475288 7.430000e-18 102.0
24 TraesCS5A01G215400 chr5D 85.016 1882 190 47 1632 3437 326118884 326120749 0.000000e+00 1829.0
25 TraesCS5A01G215400 chr5D 87.266 1547 112 38 748 2253 325646549 325648051 0.000000e+00 1687.0
26 TraesCS5A01G215400 chr5D 88.677 1413 77 43 276 1634 325662913 325664296 0.000000e+00 1646.0
27 TraesCS5A01G215400 chr5D 89.631 1003 89 4 2448 3450 325664874 325665861 0.000000e+00 1262.0
28 TraesCS5A01G215400 chr5D 90.965 819 65 4 2289 3102 325648052 325648866 0.000000e+00 1094.0
29 TraesCS5A01G215400 chr5D 93.562 466 27 1 1632 2094 325664362 325664827 0.000000e+00 691.0
30 TraesCS5A01G215400 chr5D 90.467 493 45 1 936 1426 326118041 326118533 0.000000e+00 649.0
31 TraesCS5A01G215400 chr5D 87.634 558 50 18 3140 3690 325652098 325652643 7.670000e-177 630.0
32 TraesCS5A01G215400 chr5D 85.657 502 53 13 1136 1619 325422824 325423324 1.040000e-140 510.0
33 TraesCS5A01G215400 chr5D 84.557 395 24 10 242 629 325902640 325903004 1.440000e-94 357.0
34 TraesCS5A01G215400 chr5D 85.714 266 23 5 440 694 325646209 325646470 2.490000e-67 267.0
35 TraesCS5A01G215400 chr5D 90.196 204 15 2 1435 1634 326118579 326118781 1.160000e-65 261.0
36 TraesCS5A01G215400 chr2A 79.513 493 64 23 1766 2251 154137023 154136561 2.440000e-82 316.0
37 TraesCS5A01G215400 chr4A 79.899 199 31 7 3567 3759 631217931 631218126 2.040000e-28 137.0
38 TraesCS5A01G215400 chr7D 84.956 113 14 3 1918 2029 115049248 115049138 1.230000e-20 111.0
39 TraesCS5A01G215400 chr7A 82.576 132 12 6 3568 3696 514669404 514669281 5.750000e-19 106.0
40 TraesCS5A01G215400 chr3A 89.286 84 9 0 3616 3699 529620041 529619958 5.750000e-19 106.0
41 TraesCS5A01G215400 chr3A 85.227 88 10 3 3608 3694 717261617 717261702 2.080000e-13 87.9
42 TraesCS5A01G215400 chr2B 91.935 62 5 0 1 62 741194142 741194203 2.080000e-13 87.9
43 TraesCS5A01G215400 chr2B 91.935 62 5 0 1 62 741223900 741223961 2.080000e-13 87.9
44 TraesCS5A01G215400 chr3D 100.000 29 0 0 3668 3696 367311434 367311462 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G215400 chr5A 430955420 430959621 4201 True 7760.000000 7760 100.000000 1 4202 1 chr5A.!!$R1 4201
1 TraesCS5A01G215400 chr5A 430505831 430508526 2695 True 910.666667 1362 86.031667 931 3437 3 chr5A.!!$R2 2506
2 TraesCS5A01G215400 chr5A 431028059 431030128 2069 True 768.133333 1677 89.147667 1596 3891 3 chr5A.!!$R3 2295
3 TraesCS5A01G215400 chr5A 431044657 431047618 2961 True 408.666667 713 86.789667 259 1430 3 chr5A.!!$R4 1171
4 TraesCS5A01G215400 chr5B 378510493 378513188 2695 False 1308.000000 1764 86.371500 931 3437 2 chr5B.!!$F6 2506
5 TraesCS5A01G215400 chr5B 378067699 378070917 3218 False 947.500000 2281 90.878000 429 3450 4 chr5B.!!$F5 3021
6 TraesCS5A01G215400 chr5B 377974754 377980811 6057 False 726.500000 1066 87.494000 60 3690 4 chr5B.!!$F4 3630
7 TraesCS5A01G215400 chr5D 325662913 325665861 2948 False 1199.666667 1646 90.623333 276 3450 3 chr5D.!!$F4 3174
8 TraesCS5A01G215400 chr5D 325646209 325652643 6434 False 919.500000 1687 87.894750 440 3690 4 chr5D.!!$F3 3250
9 TraesCS5A01G215400 chr5D 326118041 326120749 2708 False 913.000000 1829 88.559667 936 3437 3 chr5D.!!$F5 2501
10 TraesCS5A01G215400 chr5D 325422824 325423324 500 False 510.000000 510 85.657000 1136 1619 1 chr5D.!!$F1 483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
828 5108 0.251209 TGTCCTACGGCAGAGTGTCT 60.251 55.000 0.0 0.0 0.00 3.41 F
836 5116 0.686112 GGCAGAGTGTCTAGGGCTCT 60.686 60.000 0.0 0.0 39.89 4.09 F
1865 6472 1.407258 GGAGGAGACTGACCTGAATCG 59.593 57.143 0.0 0.0 44.43 3.34 F
2679 7337 0.108329 GCTTTGGCGTAGTGCTCCTA 60.108 55.000 0.0 0.0 45.43 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1973 6580 0.098200 TGAAGTCGCGGTAGATCACG 59.902 55.0 6.13 0.00 0.00 4.35 R
2006 6613 0.179108 GGCTTACCGAGTCGAGCAAT 60.179 55.0 21.74 3.47 36.87 3.56 R
2919 7577 0.106868 CTTGCATGCTGAGGATGGGA 60.107 55.0 20.33 0.00 0.00 4.37 R
3927 11803 0.374758 CCGTGGCGCATGCATATATC 59.625 55.0 19.57 1.71 45.35 1.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.112113 TCCCGGTTCTACATCAGAGC 58.888 55.000 0.00 0.00 33.83 4.09
27 28 5.275067 GTTCTACATCAGAGCCTTGATCT 57.725 43.478 0.00 0.00 35.67 2.75
28 29 5.288804 GTTCTACATCAGAGCCTTGATCTC 58.711 45.833 0.00 0.00 35.67 2.75
29 30 4.540715 TCTACATCAGAGCCTTGATCTCA 58.459 43.478 0.00 0.00 35.67 3.27
30 31 3.823281 ACATCAGAGCCTTGATCTCAG 57.177 47.619 0.00 0.00 35.67 3.35
31 32 2.158928 ACATCAGAGCCTTGATCTCAGC 60.159 50.000 0.00 0.00 35.67 4.26
32 33 0.829333 TCAGAGCCTTGATCTCAGCC 59.171 55.000 0.00 0.00 33.15 4.85
33 34 0.540454 CAGAGCCTTGATCTCAGCCA 59.460 55.000 0.00 0.00 33.15 4.75
34 35 0.540923 AGAGCCTTGATCTCAGCCAC 59.459 55.000 0.00 0.00 33.15 5.01
35 36 0.540923 GAGCCTTGATCTCAGCCACT 59.459 55.000 0.00 0.00 0.00 4.00
36 37 1.759445 GAGCCTTGATCTCAGCCACTA 59.241 52.381 0.00 0.00 0.00 2.74
37 38 2.169352 GAGCCTTGATCTCAGCCACTAA 59.831 50.000 0.00 0.00 0.00 2.24
38 39 2.170187 AGCCTTGATCTCAGCCACTAAG 59.830 50.000 0.00 0.00 0.00 2.18
39 40 2.093235 GCCTTGATCTCAGCCACTAAGT 60.093 50.000 0.00 0.00 0.00 2.24
40 41 3.529533 CCTTGATCTCAGCCACTAAGTG 58.470 50.000 0.00 0.00 0.00 3.16
41 42 3.055530 CCTTGATCTCAGCCACTAAGTGT 60.056 47.826 0.00 0.00 0.00 3.55
42 43 3.876274 TGATCTCAGCCACTAAGTGTC 57.124 47.619 0.00 0.00 0.00 3.67
43 44 2.497675 TGATCTCAGCCACTAAGTGTCC 59.502 50.000 0.00 0.00 0.00 4.02
44 45 2.310779 TCTCAGCCACTAAGTGTCCT 57.689 50.000 0.00 0.00 0.00 3.85
45 46 2.609747 TCTCAGCCACTAAGTGTCCTT 58.390 47.619 0.00 0.00 34.56 3.36
46 47 3.774734 TCTCAGCCACTAAGTGTCCTTA 58.225 45.455 0.00 0.00 31.89 2.69
47 48 4.353777 TCTCAGCCACTAAGTGTCCTTAT 58.646 43.478 0.00 0.00 32.82 1.73
48 49 4.160439 TCTCAGCCACTAAGTGTCCTTATG 59.840 45.833 0.00 0.00 32.82 1.90
49 50 2.939103 CAGCCACTAAGTGTCCTTATGC 59.061 50.000 0.00 0.00 32.82 3.14
50 51 2.092914 AGCCACTAAGTGTCCTTATGCC 60.093 50.000 0.00 0.00 32.82 4.40
51 52 2.550978 CCACTAAGTGTCCTTATGCCG 58.449 52.381 0.00 0.00 32.82 5.69
52 53 2.167693 CCACTAAGTGTCCTTATGCCGA 59.832 50.000 0.00 0.00 32.82 5.54
53 54 3.181465 CCACTAAGTGTCCTTATGCCGAT 60.181 47.826 0.00 0.00 32.82 4.18
54 55 4.051922 CACTAAGTGTCCTTATGCCGATC 58.948 47.826 0.00 0.00 32.82 3.69
55 56 3.961408 ACTAAGTGTCCTTATGCCGATCT 59.039 43.478 0.00 0.00 32.82 2.75
56 57 5.009710 CACTAAGTGTCCTTATGCCGATCTA 59.990 44.000 0.00 0.00 32.82 1.98
57 58 4.323553 AAGTGTCCTTATGCCGATCTAC 57.676 45.455 0.00 0.00 0.00 2.59
58 59 3.296854 AGTGTCCTTATGCCGATCTACA 58.703 45.455 0.00 0.00 0.00 2.74
64 65 6.437477 TGTCCTTATGCCGATCTACATAATCT 59.563 38.462 14.20 0.00 37.92 2.40
88 89 9.378551 TCTGTACTGCATACAAAAGTAATAAGG 57.621 33.333 9.33 0.00 43.35 2.69
89 90 8.500753 TGTACTGCATACAAAAGTAATAAGGG 57.499 34.615 6.54 0.00 40.98 3.95
112 114 8.523658 AGGGAAATAGATTCAACAAAAGTAAGC 58.476 33.333 0.00 0.00 39.98 3.09
168 170 4.144534 TGTTTATTCGGTAAAACGGTGC 57.855 40.909 0.00 0.00 38.21 5.01
176 178 3.117046 CGGTAAAACGGTGCAACAAATT 58.883 40.909 0.98 0.00 39.98 1.82
177 179 3.552294 CGGTAAAACGGTGCAACAAATTT 59.448 39.130 0.98 1.95 39.98 1.82
202 204 2.106857 TGACCCCGTAATCACCTGTTTT 59.893 45.455 0.00 0.00 0.00 2.43
233 235 8.309656 AGATTTAGGTAGTAACAACTTTAGCGT 58.690 33.333 0.00 0.00 0.00 5.07
234 236 9.573133 GATTTAGGTAGTAACAACTTTAGCGTA 57.427 33.333 0.00 0.00 0.00 4.42
284 286 2.634940 CCAGTCCTTCCACTTCTTCTGA 59.365 50.000 0.00 0.00 0.00 3.27
358 368 2.124011 AAGCTTTGCACAACATCACG 57.876 45.000 0.00 0.00 0.00 4.35
359 369 0.318107 AGCTTTGCACAACATCACGC 60.318 50.000 0.00 0.00 0.00 5.34
385 395 4.828072 ACTAGAATCTCCCAAGGTGAAC 57.172 45.455 0.00 0.00 0.00 3.18
398 408 4.202212 CCAAGGTGAACGGATTTTCCTTTT 60.202 41.667 0.00 0.00 33.30 2.27
399 409 4.848562 AGGTGAACGGATTTTCCTTTTC 57.151 40.909 0.00 0.00 33.30 2.29
403 413 3.634448 TGAACGGATTTTCCTTTTCTGCA 59.366 39.130 0.00 0.00 33.30 4.41
450 2274 1.734465 CTAAAGGCAGCTGTAGCACAC 59.266 52.381 16.64 0.00 45.16 3.82
462 3261 0.390603 TAGCACACCCGATGAAACCG 60.391 55.000 0.00 0.00 0.00 4.44
475 3274 1.339946 GAAACCGACGGCGACAGTAC 61.340 60.000 15.16 0.40 40.82 2.73
507 3306 6.210185 ACCACGTCTACTAAACCTAATGAACT 59.790 38.462 0.00 0.00 0.00 3.01
519 3318 5.491982 ACCTAATGAACTTGTGGAGCTTAG 58.508 41.667 0.00 0.00 0.00 2.18
527 3326 0.474854 TGTGGAGCTTAGGGGGTCAA 60.475 55.000 0.00 0.00 35.67 3.18
563 3362 1.613925 CTACGTCCGATGATGGTCCAT 59.386 52.381 3.26 3.26 0.00 3.41
704 4937 5.882557 ACTCCATGAAACATAAGCAACCTAG 59.117 40.000 0.00 0.00 0.00 3.02
705 4938 6.061022 TCCATGAAACATAAGCAACCTAGA 57.939 37.500 0.00 0.00 0.00 2.43
707 4940 5.220662 CCATGAAACATAAGCAACCTAGACG 60.221 44.000 0.00 0.00 0.00 4.18
708 4941 4.890088 TGAAACATAAGCAACCTAGACGT 58.110 39.130 0.00 0.00 0.00 4.34
709 4942 4.927425 TGAAACATAAGCAACCTAGACGTC 59.073 41.667 7.70 7.70 0.00 4.34
728 4998 1.515736 CGTCTCGCCGGTAGAAACC 60.516 63.158 1.90 0.00 42.95 3.27
782 5058 1.351076 CCATTCCCTTGCCCTGTTTT 58.649 50.000 0.00 0.00 0.00 2.43
804 5080 0.816421 CAGCCATCACATCATCGGCA 60.816 55.000 0.00 0.00 45.47 5.69
828 5108 0.251209 TGTCCTACGGCAGAGTGTCT 60.251 55.000 0.00 0.00 0.00 3.41
832 5112 1.025812 CTACGGCAGAGTGTCTAGGG 58.974 60.000 0.00 0.00 0.00 3.53
833 5113 1.035932 TACGGCAGAGTGTCTAGGGC 61.036 60.000 0.00 0.00 0.00 5.19
834 5114 2.055042 CGGCAGAGTGTCTAGGGCT 61.055 63.158 0.00 0.00 0.00 5.19
835 5115 1.819905 GGCAGAGTGTCTAGGGCTC 59.180 63.158 0.00 0.00 0.00 4.70
836 5116 0.686112 GGCAGAGTGTCTAGGGCTCT 60.686 60.000 0.00 0.00 39.89 4.09
838 5118 1.953686 GCAGAGTGTCTAGGGCTCTAG 59.046 57.143 15.01 15.01 43.27 2.43
852 5173 4.514577 CTAGGCCACCCGCACTCG 62.515 72.222 5.01 0.00 40.31 4.18
972 5329 9.918630 CAAACTTTCTTGATCCTTCAATATTGT 57.081 29.630 14.97 0.00 40.95 2.71
1863 6470 2.183679 GTGGAGGAGACTGACCTGAAT 58.816 52.381 0.00 0.00 44.43 2.57
1865 6472 1.407258 GGAGGAGACTGACCTGAATCG 59.593 57.143 0.00 0.00 44.43 3.34
1867 6474 2.494073 GAGGAGACTGACCTGAATCGTT 59.506 50.000 0.00 0.00 44.43 3.85
1921 6528 2.932614 CGTGGATGACAAGGATGAAGAC 59.067 50.000 0.00 0.00 0.00 3.01
1969 6576 1.461091 TTTCTCCACGACGCAGACCT 61.461 55.000 0.00 0.00 0.00 3.85
2006 6613 2.354704 CGACTTCAAGGCCTCCAACATA 60.355 50.000 5.23 0.00 0.00 2.29
2026 6637 1.248785 TTGCTCGACTCGGTAAGCCT 61.249 55.000 7.84 0.00 33.79 4.58
2033 6644 0.750911 ACTCGGTAAGCCTCCCGTAG 60.751 60.000 5.58 5.01 44.51 3.51
2037 6648 0.540454 GGTAAGCCTCCCGTAGCTTT 59.460 55.000 2.21 0.00 46.99 3.51
2045 6656 3.619242 GCCTCCCGTAGCTTTAGACTTTT 60.619 47.826 0.00 0.00 0.00 2.27
2062 6673 5.289434 AGACTTTTTGCAAAGAAAAGAAGCG 59.711 36.000 22.70 4.88 43.44 4.68
2079 6693 4.338118 AGAAGCGGTTTTGAAAATGTCTCA 59.662 37.500 0.00 0.00 0.00 3.27
2147 6765 7.148407 CGAAAAAGCTTCACACCTCTTATACAT 60.148 37.037 0.00 0.00 0.00 2.29
2153 6771 6.183360 GCTTCACACCTCTTATACATTGGAAC 60.183 42.308 0.00 0.00 0.00 3.62
2160 6778 7.861372 CACCTCTTATACATTGGAACTACTACG 59.139 40.741 0.00 0.00 0.00 3.51
2273 6923 4.156455 ACTTTGTTGTGACCTGACTGAT 57.844 40.909 0.00 0.00 0.00 2.90
2277 6927 4.955811 TGTTGTGACCTGACTGATACTT 57.044 40.909 0.00 0.00 0.00 2.24
2291 6941 6.881065 TGACTGATACTTTGAAGATTCTTGGG 59.119 38.462 3.03 0.00 0.00 4.12
2318 6968 8.024865 TGCATGACAAACTTGAGAAATCTTATG 58.975 33.333 0.00 0.00 0.00 1.90
2319 6969 7.008992 GCATGACAAACTTGAGAAATCTTATGC 59.991 37.037 0.00 0.00 0.00 3.14
2320 6970 7.750229 TGACAAACTTGAGAAATCTTATGCT 57.250 32.000 0.00 0.00 0.00 3.79
2359 7011 5.877012 CCACATAAGTCAAGCTCACAGTAAT 59.123 40.000 0.00 0.00 0.00 1.89
2366 7018 2.930040 CAAGCTCACAGTAATACCCACG 59.070 50.000 0.00 0.00 0.00 4.94
2369 7021 2.481449 GCTCACAGTAATACCCACGGAG 60.481 54.545 0.00 0.00 0.00 4.63
2401 7053 5.820423 TCACAAACTGTAGTGCAATTGTACT 59.180 36.000 28.46 28.46 43.35 2.73
2402 7054 6.987404 TCACAAACTGTAGTGCAATTGTACTA 59.013 34.615 26.54 26.54 41.24 1.82
2667 7325 6.931281 TCAAGAGTGATGTATATAGCTTTGGC 59.069 38.462 0.00 0.00 39.06 4.52
2679 7337 0.108329 GCTTTGGCGTAGTGCTCCTA 60.108 55.000 0.00 0.00 45.43 2.94
2829 7487 2.493278 GTGCCAATACTCATGCAAAGGT 59.507 45.455 0.00 0.00 35.16 3.50
2865 7523 2.106511 ACTGGTGGCATACAAGTGTCTT 59.893 45.455 0.00 0.00 42.11 3.01
2919 7577 2.670148 GGTGGTCAAGGCCCTCGAT 61.670 63.158 0.00 0.00 0.00 3.59
2923 7581 2.040442 TCAAGGCCCTCGATCCCA 59.960 61.111 0.00 0.00 0.00 4.37
2935 7593 0.954449 CGATCCCATCCTCAGCATGC 60.954 60.000 10.51 10.51 34.76 4.06
2994 7652 1.056660 TTGTGGAGGAGGACAAGGTC 58.943 55.000 0.00 0.00 0.00 3.85
3165 10954 3.283684 CGGCGGCAACAAAGGTCA 61.284 61.111 10.53 0.00 0.00 4.02
3214 11068 4.490706 ACAAGACTAAGGTAGGGAAGTGT 58.509 43.478 0.00 0.00 0.00 3.55
3230 11084 4.876107 GGAAGTGTGTAGGACAATATGGTG 59.124 45.833 0.00 0.00 35.91 4.17
3308 11168 8.093927 TGTGGATTGTGTTTCTTTTCTTCTTTT 58.906 29.630 0.00 0.00 0.00 2.27
3309 11169 8.382875 GTGGATTGTGTTTCTTTTCTTCTTTTG 58.617 33.333 0.00 0.00 0.00 2.44
3310 11170 8.093927 TGGATTGTGTTTCTTTTCTTCTTTTGT 58.906 29.630 0.00 0.00 0.00 2.83
3311 11171 9.581099 GGATTGTGTTTCTTTTCTTCTTTTGTA 57.419 29.630 0.00 0.00 0.00 2.41
3329 11189 8.923270 TCTTTTGTATTTTTGGAAAGGTCTCAT 58.077 29.630 0.00 0.00 0.00 2.90
3331 11191 7.595819 TTGTATTTTTGGAAAGGTCTCATGT 57.404 32.000 0.00 0.00 0.00 3.21
3412 11272 3.672241 GCAAAACGGTGTGACAAAAGTCT 60.672 43.478 0.00 0.00 0.00 3.24
3414 11274 2.396590 ACGGTGTGACAAAAGTCTGT 57.603 45.000 0.00 0.00 0.00 3.41
3515 11377 9.567776 TTACACTCTAGAATTTTGATCCAACAA 57.432 29.630 0.00 0.00 0.00 2.83
3549 11411 7.161404 TGTTTGCAAGTGAGATGAGTATTACT 58.839 34.615 0.00 0.00 0.00 2.24
3580 11442 4.783621 ATGCATGCACGCCTCGGT 62.784 61.111 25.37 0.38 0.00 4.69
3586 11448 0.321298 ATGCACGCCTCGGTAAAACT 60.321 50.000 0.00 0.00 0.00 2.66
3594 11456 1.459592 CCTCGGTAAAACTTCGCACAG 59.540 52.381 0.00 0.00 0.00 3.66
3600 11462 3.254903 GGTAAAACTTCGCACAGGGAAAT 59.745 43.478 0.00 0.00 34.27 2.17
3601 11463 4.261867 GGTAAAACTTCGCACAGGGAAATT 60.262 41.667 0.00 0.00 34.27 1.82
3606 11468 3.573967 ACTTCGCACAGGGAAATTGAAAT 59.426 39.130 0.00 0.00 34.27 2.17
3614 11476 6.632909 CACAGGGAAATTGAAATGCAGATTA 58.367 36.000 0.00 0.00 0.00 1.75
3627 11489 6.432607 AATGCAGATTATCATCTTATGCCG 57.567 37.500 0.00 0.00 37.71 5.69
3628 11490 5.151297 TGCAGATTATCATCTTATGCCGA 57.849 39.130 0.00 0.00 37.71 5.54
3670 11532 4.370049 TGACCACATTCAAATGCTTTGTG 58.630 39.130 2.66 0.00 41.36 3.33
3692 11554 1.002868 GTGTGAGCACTGAGGCCAT 60.003 57.895 5.01 0.00 42.13 4.40
3702 11573 2.095567 CACTGAGGCCATCGTTGAAAAG 60.096 50.000 5.01 0.00 0.00 2.27
3710 11581 4.398044 GGCCATCGTTGAAAAGAAGGATAA 59.602 41.667 0.00 0.00 31.01 1.75
3711 11582 5.449177 GGCCATCGTTGAAAAGAAGGATAAG 60.449 44.000 0.00 0.00 31.01 1.73
3733 11606 2.460757 GCAACACAAATGAATGCCCT 57.539 45.000 0.00 0.00 36.69 5.19
3734 11607 3.591196 GCAACACAAATGAATGCCCTA 57.409 42.857 0.00 0.00 36.69 3.53
3737 11613 4.330620 GCAACACAAATGAATGCCCTATTG 59.669 41.667 0.00 0.00 36.69 1.90
3754 11630 6.039382 GCCCTATTGAAATAAAGAACGTGGAT 59.961 38.462 0.00 0.00 0.00 3.41
3769 11645 7.792032 AGAACGTGGATTTATAGATTCCTTGA 58.208 34.615 0.00 0.00 0.00 3.02
3770 11646 7.928706 AGAACGTGGATTTATAGATTCCTTGAG 59.071 37.037 0.00 0.00 0.00 3.02
3773 11649 6.538263 GTGGATTTATAGATTCCTTGAGCCT 58.462 40.000 0.00 0.00 0.00 4.58
3774 11650 7.525526 CGTGGATTTATAGATTCCTTGAGCCTA 60.526 40.741 0.00 0.00 0.00 3.93
3775 11651 8.325046 GTGGATTTATAGATTCCTTGAGCCTAT 58.675 37.037 0.00 0.00 0.00 2.57
3795 11671 8.733808 AGCCTATAATTATTGGGTTAGAAAGGT 58.266 33.333 20.48 0.57 36.21 3.50
3796 11672 8.793592 GCCTATAATTATTGGGTTAGAAAGGTG 58.206 37.037 22.33 0.00 0.00 4.00
3797 11673 9.297037 CCTATAATTATTGGGTTAGAAAGGTGG 57.703 37.037 15.78 0.00 0.00 4.61
3803 11679 1.558294 GGGTTAGAAAGGTGGGATCGT 59.442 52.381 0.00 0.00 0.00 3.73
3804 11680 2.629051 GGTTAGAAAGGTGGGATCGTG 58.371 52.381 0.00 0.00 0.00 4.35
3823 11699 2.975851 GTGAAGTAACACACGTACTCCG 59.024 50.000 0.00 0.00 40.11 4.63
3824 11700 2.030893 TGAAGTAACACACGTACTCCGG 60.031 50.000 0.00 0.00 42.24 5.14
3826 11702 2.229792 AGTAACACACGTACTCCGGAA 58.770 47.619 5.23 0.00 42.24 4.30
3827 11703 2.227388 AGTAACACACGTACTCCGGAAG 59.773 50.000 5.23 2.09 42.24 3.46
3840 11716 2.372852 CGGAAGGAAGAACCCCTCA 58.627 57.895 0.00 0.00 40.05 3.86
3841 11717 0.690762 CGGAAGGAAGAACCCCTCAA 59.309 55.000 0.00 0.00 40.05 3.02
3842 11718 1.073284 CGGAAGGAAGAACCCCTCAAA 59.927 52.381 0.00 0.00 40.05 2.69
3843 11719 2.488347 CGGAAGGAAGAACCCCTCAAAA 60.488 50.000 0.00 0.00 40.05 2.44
3844 11720 3.572642 GGAAGGAAGAACCCCTCAAAAA 58.427 45.455 0.00 0.00 40.05 1.94
3882 11758 1.501337 CCATGCATGCATCGCGTAGT 61.501 55.000 30.07 5.14 33.90 2.73
3885 11761 1.011904 GCATGCATCGCGTAGTGTG 60.012 57.895 14.21 2.51 40.08 3.82
3886 11762 1.695893 GCATGCATCGCGTAGTGTGT 61.696 55.000 14.21 0.00 40.08 3.72
3891 11767 1.799181 GCATCGCGTAGTGTGTGAGAT 60.799 52.381 5.77 0.00 40.08 2.75
3892 11768 2.530177 CATCGCGTAGTGTGTGAGATT 58.470 47.619 5.77 0.00 40.08 2.40
3893 11769 2.257974 TCGCGTAGTGTGTGAGATTC 57.742 50.000 5.77 0.00 40.08 2.52
3894 11770 1.538075 TCGCGTAGTGTGTGAGATTCA 59.462 47.619 5.77 0.00 40.08 2.57
3895 11771 2.030628 TCGCGTAGTGTGTGAGATTCAA 60.031 45.455 5.77 0.00 40.08 2.69
3896 11772 2.923655 CGCGTAGTGTGTGAGATTCAAT 59.076 45.455 0.00 0.00 0.00 2.57
3897 11773 3.367932 CGCGTAGTGTGTGAGATTCAATT 59.632 43.478 0.00 0.00 0.00 2.32
3898 11774 4.561213 CGCGTAGTGTGTGAGATTCAATTA 59.439 41.667 0.00 0.00 0.00 1.40
3899 11775 5.061684 CGCGTAGTGTGTGAGATTCAATTAA 59.938 40.000 0.00 0.00 0.00 1.40
3900 11776 6.470160 GCGTAGTGTGTGAGATTCAATTAAG 58.530 40.000 0.00 0.00 0.00 1.85
3901 11777 6.310467 GCGTAGTGTGTGAGATTCAATTAAGA 59.690 38.462 0.00 0.00 0.00 2.10
3902 11778 7.463383 GCGTAGTGTGTGAGATTCAATTAAGAG 60.463 40.741 0.00 0.00 0.00 2.85
3903 11779 7.542477 CGTAGTGTGTGAGATTCAATTAAGAGT 59.458 37.037 0.00 0.00 0.00 3.24
3904 11780 7.664082 AGTGTGTGAGATTCAATTAAGAGTG 57.336 36.000 0.00 0.00 0.00 3.51
3905 11781 7.445121 AGTGTGTGAGATTCAATTAAGAGTGA 58.555 34.615 0.00 0.00 0.00 3.41
3906 11782 8.099537 AGTGTGTGAGATTCAATTAAGAGTGAT 58.900 33.333 0.00 0.00 28.89 3.06
3907 11783 8.173775 GTGTGTGAGATTCAATTAAGAGTGATG 58.826 37.037 0.00 0.00 28.89 3.07
3908 11784 7.335171 TGTGTGAGATTCAATTAAGAGTGATGG 59.665 37.037 0.00 0.00 28.89 3.51
3909 11785 7.550551 GTGTGAGATTCAATTAAGAGTGATGGA 59.449 37.037 0.00 0.00 28.89 3.41
3910 11786 7.767659 TGTGAGATTCAATTAAGAGTGATGGAG 59.232 37.037 0.00 0.00 28.89 3.86
3911 11787 7.226325 GTGAGATTCAATTAAGAGTGATGGAGG 59.774 40.741 0.00 0.00 28.89 4.30
3912 11788 7.126268 TGAGATTCAATTAAGAGTGATGGAGGA 59.874 37.037 0.00 0.00 28.89 3.71
3913 11789 8.043429 AGATTCAATTAAGAGTGATGGAGGAT 57.957 34.615 0.00 0.00 28.89 3.24
3914 11790 8.501070 AGATTCAATTAAGAGTGATGGAGGATT 58.499 33.333 0.00 0.00 28.89 3.01
3915 11791 8.688747 ATTCAATTAAGAGTGATGGAGGATTC 57.311 34.615 0.00 0.00 28.89 2.52
3916 11792 7.443302 TCAATTAAGAGTGATGGAGGATTCT 57.557 36.000 0.00 0.00 0.00 2.40
3917 11793 7.278135 TCAATTAAGAGTGATGGAGGATTCTG 58.722 38.462 0.00 0.00 0.00 3.02
3918 11794 3.557228 AAGAGTGATGGAGGATTCTGC 57.443 47.619 0.00 0.00 0.00 4.26
3919 11795 1.411977 AGAGTGATGGAGGATTCTGCG 59.588 52.381 0.00 0.00 33.73 5.18
3920 11796 0.467384 AGTGATGGAGGATTCTGCGG 59.533 55.000 0.00 0.00 33.73 5.69
3921 11797 0.465705 GTGATGGAGGATTCTGCGGA 59.534 55.000 0.00 0.00 33.73 5.54
3922 11798 1.134401 GTGATGGAGGATTCTGCGGAA 60.134 52.381 11.11 11.11 33.73 4.30
3923 11799 1.770658 TGATGGAGGATTCTGCGGAAT 59.229 47.619 20.80 20.80 43.99 3.01
3935 11811 6.615264 ATTCTGCGGAATCATGATATATGC 57.385 37.500 15.26 11.28 37.61 3.14
3936 11812 5.088680 TCTGCGGAATCATGATATATGCA 57.911 39.130 9.04 14.97 0.00 3.96
3937 11813 5.677567 TCTGCGGAATCATGATATATGCAT 58.322 37.500 18.96 3.79 0.00 3.96
3938 11814 5.526111 TCTGCGGAATCATGATATATGCATG 59.474 40.000 18.96 14.23 43.39 4.06
3939 11815 4.035909 TGCGGAATCATGATATATGCATGC 59.964 41.667 11.82 11.82 42.13 4.06
3940 11816 4.769215 CGGAATCATGATATATGCATGCG 58.231 43.478 14.09 4.72 42.13 4.73
3941 11817 4.534168 GGAATCATGATATATGCATGCGC 58.466 43.478 14.09 0.00 42.13 6.09
3942 11818 4.534168 GAATCATGATATATGCATGCGCC 58.466 43.478 14.09 0.00 42.13 6.53
3943 11819 2.988570 TCATGATATATGCATGCGCCA 58.011 42.857 14.09 2.81 42.13 5.69
3944 11820 2.679336 TCATGATATATGCATGCGCCAC 59.321 45.455 14.09 3.01 42.13 5.01
3945 11821 1.077915 TGATATATGCATGCGCCACG 58.922 50.000 14.09 0.00 37.32 4.94
3946 11822 0.374758 GATATATGCATGCGCCACGG 59.625 55.000 14.09 0.00 37.32 4.94
3947 11823 1.026182 ATATATGCATGCGCCACGGG 61.026 55.000 14.09 0.00 37.32 5.28
3960 11836 3.736224 ACGGGGGCTCTCGTCCTA 61.736 66.667 5.13 0.00 34.20 2.94
3961 11837 2.441532 CGGGGGCTCTCGTCCTAA 60.442 66.667 0.00 0.00 34.49 2.69
3962 11838 2.783288 CGGGGGCTCTCGTCCTAAC 61.783 68.421 0.00 0.00 34.49 2.34
3963 11839 1.684734 GGGGGCTCTCGTCCTAACA 60.685 63.158 0.00 0.00 34.49 2.41
3964 11840 1.049289 GGGGGCTCTCGTCCTAACAT 61.049 60.000 0.00 0.00 34.49 2.71
3965 11841 0.389757 GGGGCTCTCGTCCTAACATC 59.610 60.000 0.00 0.00 34.49 3.06
3966 11842 1.112113 GGGCTCTCGTCCTAACATCA 58.888 55.000 0.00 0.00 30.13 3.07
3967 11843 1.689273 GGGCTCTCGTCCTAACATCAT 59.311 52.381 0.00 0.00 30.13 2.45
3968 11844 2.288518 GGGCTCTCGTCCTAACATCATC 60.289 54.545 0.00 0.00 30.13 2.92
3969 11845 2.288518 GGCTCTCGTCCTAACATCATCC 60.289 54.545 0.00 0.00 0.00 3.51
3970 11846 2.625790 GCTCTCGTCCTAACATCATCCT 59.374 50.000 0.00 0.00 0.00 3.24
3971 11847 3.821600 GCTCTCGTCCTAACATCATCCTA 59.178 47.826 0.00 0.00 0.00 2.94
3972 11848 4.320641 GCTCTCGTCCTAACATCATCCTAC 60.321 50.000 0.00 0.00 0.00 3.18
3973 11849 5.050126 TCTCGTCCTAACATCATCCTACT 57.950 43.478 0.00 0.00 0.00 2.57
3974 11850 5.446860 TCTCGTCCTAACATCATCCTACTT 58.553 41.667 0.00 0.00 0.00 2.24
3975 11851 6.598503 TCTCGTCCTAACATCATCCTACTTA 58.401 40.000 0.00 0.00 0.00 2.24
3976 11852 7.232188 TCTCGTCCTAACATCATCCTACTTAT 58.768 38.462 0.00 0.00 0.00 1.73
3977 11853 7.175119 TCTCGTCCTAACATCATCCTACTTATG 59.825 40.741 0.00 0.00 0.00 1.90
3978 11854 7.002276 TCGTCCTAACATCATCCTACTTATGA 58.998 38.462 0.00 0.00 37.73 2.15
3979 11855 7.175119 TCGTCCTAACATCATCCTACTTATGAG 59.825 40.741 0.00 0.00 36.82 2.90
3980 11856 7.175119 CGTCCTAACATCATCCTACTTATGAGA 59.825 40.741 0.00 0.00 36.82 3.27
3981 11857 8.861086 GTCCTAACATCATCCTACTTATGAGAA 58.139 37.037 0.00 0.00 36.82 2.87
3982 11858 9.083422 TCCTAACATCATCCTACTTATGAGAAG 57.917 37.037 0.00 0.00 36.82 2.85
3983 11859 8.865090 CCTAACATCATCCTACTTATGAGAAGT 58.135 37.037 0.00 0.00 36.82 3.01
3987 11863 9.647918 ACATCATCCTACTTATGAGAAGTTAGA 57.352 33.333 0.00 0.00 36.82 2.10
3988 11864 9.906660 CATCATCCTACTTATGAGAAGTTAGAC 57.093 37.037 0.00 0.00 36.82 2.59
3989 11865 9.647918 ATCATCCTACTTATGAGAAGTTAGACA 57.352 33.333 0.00 0.00 36.82 3.41
3990 11866 9.475620 TCATCCTACTTATGAGAAGTTAGACAA 57.524 33.333 0.00 0.00 0.00 3.18
3991 11867 9.743057 CATCCTACTTATGAGAAGTTAGACAAG 57.257 37.037 0.00 0.00 0.00 3.16
3992 11868 9.702253 ATCCTACTTATGAGAAGTTAGACAAGA 57.298 33.333 0.00 0.00 0.00 3.02
3993 11869 9.702253 TCCTACTTATGAGAAGTTAGACAAGAT 57.298 33.333 0.00 0.00 0.00 2.40
4007 11883 9.601217 AGTTAGACAAGATATTAATGTGTCCAC 57.399 33.333 14.63 12.69 0.00 4.02
4008 11884 8.827677 GTTAGACAAGATATTAATGTGTCCACC 58.172 37.037 14.63 5.01 0.00 4.61
4009 11885 7.200434 AGACAAGATATTAATGTGTCCACCT 57.800 36.000 14.63 1.35 0.00 4.00
4010 11886 7.633789 AGACAAGATATTAATGTGTCCACCTT 58.366 34.615 14.63 0.00 0.00 3.50
4011 11887 7.554118 AGACAAGATATTAATGTGTCCACCTTG 59.446 37.037 14.63 11.10 34.98 3.61
4012 11888 6.603201 ACAAGATATTAATGTGTCCACCTTGG 59.397 38.462 11.27 0.00 39.43 3.61
4013 11889 5.694995 AGATATTAATGTGTCCACCTTGGG 58.305 41.667 0.00 0.00 38.32 4.12
4014 11890 5.431731 AGATATTAATGTGTCCACCTTGGGA 59.568 40.000 0.00 0.00 38.32 4.37
4015 11891 3.433306 TTAATGTGTCCACCTTGGGAG 57.567 47.619 0.00 0.00 38.32 4.30
4017 11893 0.475632 ATGTGTCCACCTTGGGAGGA 60.476 55.000 0.00 0.00 46.74 3.71
4018 11894 0.696143 TGTGTCCACCTTGGGAGGAA 60.696 55.000 4.41 0.00 43.63 3.36
4019 11895 0.476771 GTGTCCACCTTGGGAGGAAA 59.523 55.000 4.41 0.00 43.63 3.13
4020 11896 1.133606 GTGTCCACCTTGGGAGGAAAA 60.134 52.381 4.41 0.00 43.63 2.29
4021 11897 1.571457 TGTCCACCTTGGGAGGAAAAA 59.429 47.619 4.41 0.00 43.63 1.94
4022 11898 2.178984 TGTCCACCTTGGGAGGAAAAAT 59.821 45.455 4.41 0.00 43.63 1.82
4023 11899 3.399644 TGTCCACCTTGGGAGGAAAAATA 59.600 43.478 4.41 0.00 43.63 1.40
4024 11900 3.762288 GTCCACCTTGGGAGGAAAAATAC 59.238 47.826 4.41 0.00 43.63 1.89
4025 11901 3.096852 CCACCTTGGGAGGAAAAATACC 58.903 50.000 0.00 0.00 46.74 2.73
4026 11902 3.096852 CACCTTGGGAGGAAAAATACCC 58.903 50.000 0.00 0.00 46.74 3.69
4027 11903 2.043939 ACCTTGGGAGGAAAAATACCCC 59.956 50.000 0.00 0.00 46.74 4.95
4028 11904 2.314852 CCTTGGGAGGAAAAATACCCCT 59.685 50.000 0.00 0.00 46.74 4.79
4029 11905 3.245984 CCTTGGGAGGAAAAATACCCCTT 60.246 47.826 0.00 0.00 46.74 3.95
4030 11906 3.466395 TGGGAGGAAAAATACCCCTTG 57.534 47.619 0.00 0.00 41.44 3.61
4031 11907 2.997463 TGGGAGGAAAAATACCCCTTGA 59.003 45.455 0.00 0.00 41.44 3.02
4032 11908 3.245479 TGGGAGGAAAAATACCCCTTGAC 60.245 47.826 0.00 0.00 41.44 3.18
4033 11909 3.011369 GGGAGGAAAAATACCCCTTGACT 59.989 47.826 0.00 0.00 36.65 3.41
4034 11910 4.228895 GGGAGGAAAAATACCCCTTGACTA 59.771 45.833 0.00 0.00 36.65 2.59
4035 11911 5.103643 GGGAGGAAAAATACCCCTTGACTAT 60.104 44.000 0.00 0.00 36.65 2.12
4036 11912 6.432581 GGAGGAAAAATACCCCTTGACTATT 58.567 40.000 0.00 0.00 0.00 1.73
4037 11913 6.895756 GGAGGAAAAATACCCCTTGACTATTT 59.104 38.462 0.00 0.00 0.00 1.40
4038 11914 7.399191 GGAGGAAAAATACCCCTTGACTATTTT 59.601 37.037 0.00 0.00 33.45 1.82
4039 11915 8.134202 AGGAAAAATACCCCTTGACTATTTTG 57.866 34.615 0.00 0.00 32.76 2.44
4040 11916 6.816640 GGAAAAATACCCCTTGACTATTTTGC 59.183 38.462 0.00 0.00 32.76 3.68
4041 11917 6.926630 AAAATACCCCTTGACTATTTTGCA 57.073 33.333 0.00 0.00 31.73 4.08
4042 11918 6.926630 AAATACCCCTTGACTATTTTGCAA 57.073 33.333 0.00 0.00 0.00 4.08
4043 11919 6.530019 AATACCCCTTGACTATTTTGCAAG 57.470 37.500 0.00 0.00 38.90 4.01
4044 11920 2.562738 ACCCCTTGACTATTTTGCAAGC 59.437 45.455 0.00 0.00 38.10 4.01
4045 11921 2.827921 CCCCTTGACTATTTTGCAAGCT 59.172 45.455 0.00 0.00 38.10 3.74
4046 11922 3.259123 CCCCTTGACTATTTTGCAAGCTT 59.741 43.478 0.00 0.00 38.10 3.74
4047 11923 4.262592 CCCCTTGACTATTTTGCAAGCTTT 60.263 41.667 0.00 0.00 38.10 3.51
4048 11924 5.299949 CCCTTGACTATTTTGCAAGCTTTT 58.700 37.500 0.00 0.00 38.10 2.27
4049 11925 5.178067 CCCTTGACTATTTTGCAAGCTTTTG 59.822 40.000 0.00 0.00 38.10 2.44
4067 11943 6.953843 GCTTTTGCTAGATAAATCTCTGACC 58.046 40.000 0.00 0.00 43.35 4.02
4068 11944 6.540189 GCTTTTGCTAGATAAATCTCTGACCA 59.460 38.462 0.00 0.00 43.35 4.02
4069 11945 7.228308 GCTTTTGCTAGATAAATCTCTGACCAT 59.772 37.037 0.00 0.00 43.35 3.55
4070 11946 9.770097 CTTTTGCTAGATAAATCTCTGACCATA 57.230 33.333 0.00 0.00 38.32 2.74
4071 11947 9.547753 TTTTGCTAGATAAATCTCTGACCATAC 57.452 33.333 0.00 0.00 38.32 2.39
4072 11948 7.839680 TGCTAGATAAATCTCTGACCATACA 57.160 36.000 0.00 0.00 38.32 2.29
4073 11949 7.661968 TGCTAGATAAATCTCTGACCATACAC 58.338 38.462 0.00 0.00 38.32 2.90
4074 11950 7.093992 GCTAGATAAATCTCTGACCATACACC 58.906 42.308 0.00 0.00 38.32 4.16
4075 11951 7.255977 GCTAGATAAATCTCTGACCATACACCA 60.256 40.741 0.00 0.00 38.32 4.17
4076 11952 7.623999 AGATAAATCTCTGACCATACACCAT 57.376 36.000 0.00 0.00 29.30 3.55
4077 11953 8.038862 AGATAAATCTCTGACCATACACCATT 57.961 34.615 0.00 0.00 29.30 3.16
4078 11954 8.497745 AGATAAATCTCTGACCATACACCATTT 58.502 33.333 0.00 0.00 29.30 2.32
4079 11955 9.125026 GATAAATCTCTGACCATACACCATTTT 57.875 33.333 0.00 0.00 0.00 1.82
4080 11956 7.781324 AAATCTCTGACCATACACCATTTTT 57.219 32.000 0.00 0.00 0.00 1.94
4081 11957 8.877864 AAATCTCTGACCATACACCATTTTTA 57.122 30.769 0.00 0.00 0.00 1.52
4082 11958 9.479549 AAATCTCTGACCATACACCATTTTTAT 57.520 29.630 0.00 0.00 0.00 1.40
4083 11959 7.864108 TCTCTGACCATACACCATTTTTATG 57.136 36.000 0.00 0.00 0.00 1.90
4084 11960 6.828273 TCTCTGACCATACACCATTTTTATGG 59.172 38.462 5.49 5.49 45.42 2.74
4085 11961 6.726379 TCTGACCATACACCATTTTTATGGA 58.274 36.000 12.71 0.00 43.49 3.41
4086 11962 6.601613 TCTGACCATACACCATTTTTATGGAC 59.398 38.462 12.71 7.83 43.49 4.02
4087 11963 6.249192 TGACCATACACCATTTTTATGGACA 58.751 36.000 12.71 10.02 43.49 4.02
4088 11964 6.894654 TGACCATACACCATTTTTATGGACAT 59.105 34.615 12.71 0.00 43.49 3.06
4089 11965 7.398618 TGACCATACACCATTTTTATGGACATT 59.601 33.333 12.71 0.00 43.49 2.71
4090 11966 8.830915 ACCATACACCATTTTTATGGACATTA 57.169 30.769 12.71 0.00 43.49 1.90
4091 11967 8.912988 ACCATACACCATTTTTATGGACATTAG 58.087 33.333 12.71 0.00 43.49 1.73
4092 11968 8.359642 CCATACACCATTTTTATGGACATTAGG 58.640 37.037 10.96 2.61 43.49 2.69
4093 11969 6.790232 ACACCATTTTTATGGACATTAGGG 57.210 37.500 10.96 0.00 44.39 3.53
4094 11970 6.498538 ACACCATTTTTATGGACATTAGGGA 58.501 36.000 10.96 0.00 44.39 4.20
4095 11971 6.957020 ACACCATTTTTATGGACATTAGGGAA 59.043 34.615 10.96 0.00 44.39 3.97
4096 11972 7.456269 ACACCATTTTTATGGACATTAGGGAAA 59.544 33.333 10.96 0.00 44.39 3.13
4097 11973 8.317679 CACCATTTTTATGGACATTAGGGAAAA 58.682 33.333 10.96 0.00 44.39 2.29
4098 11974 9.056799 ACCATTTTTATGGACATTAGGGAAAAT 57.943 29.630 10.96 0.00 44.39 1.82
4106 11982 7.947782 TGGACATTAGGGAAAATAGATAGGT 57.052 36.000 0.00 0.00 0.00 3.08
4107 11983 9.629649 ATGGACATTAGGGAAAATAGATAGGTA 57.370 33.333 0.00 0.00 0.00 3.08
4108 11984 9.455144 TGGACATTAGGGAAAATAGATAGGTAA 57.545 33.333 0.00 0.00 0.00 2.85
4109 11985 9.945904 GGACATTAGGGAAAATAGATAGGTAAG 57.054 37.037 0.00 0.00 0.00 2.34
4110 11986 9.438228 GACATTAGGGAAAATAGATAGGTAAGC 57.562 37.037 0.00 0.00 0.00 3.09
4111 11987 8.383947 ACATTAGGGAAAATAGATAGGTAAGCC 58.616 37.037 0.00 0.00 0.00 4.35
4129 12005 9.975218 AGGTAAGCCTATTTTTAGATTTGAGAA 57.025 29.630 0.00 0.00 44.90 2.87
4133 12009 9.746457 AAGCCTATTTTTAGATTTGAGAACTCT 57.254 29.630 3.51 0.00 0.00 3.24
4134 12010 9.746457 AGCCTATTTTTAGATTTGAGAACTCTT 57.254 29.630 3.51 0.00 0.00 2.85
4135 12011 9.780413 GCCTATTTTTAGATTTGAGAACTCTTG 57.220 33.333 3.51 0.00 0.00 3.02
4138 12014 6.575162 TTTTAGATTTGAGAACTCTTGGGC 57.425 37.500 3.51 0.00 0.00 5.36
4139 12015 5.505181 TTAGATTTGAGAACTCTTGGGCT 57.495 39.130 3.51 0.00 0.00 5.19
4140 12016 4.379302 AGATTTGAGAACTCTTGGGCTT 57.621 40.909 3.51 0.00 0.00 4.35
4141 12017 4.734266 AGATTTGAGAACTCTTGGGCTTT 58.266 39.130 3.51 0.00 0.00 3.51
4142 12018 4.522022 AGATTTGAGAACTCTTGGGCTTTG 59.478 41.667 3.51 0.00 0.00 2.77
4143 12019 3.576078 TTGAGAACTCTTGGGCTTTGA 57.424 42.857 3.51 0.00 0.00 2.69
4144 12020 3.131709 TGAGAACTCTTGGGCTTTGAG 57.868 47.619 3.51 0.00 0.00 3.02
4145 12021 2.705658 TGAGAACTCTTGGGCTTTGAGA 59.294 45.455 3.51 0.00 0.00 3.27
4146 12022 3.328931 TGAGAACTCTTGGGCTTTGAGAT 59.671 43.478 3.51 0.00 0.00 2.75
4147 12023 4.532126 TGAGAACTCTTGGGCTTTGAGATA 59.468 41.667 3.51 0.00 0.00 1.98
4148 12024 5.013079 TGAGAACTCTTGGGCTTTGAGATAA 59.987 40.000 3.51 0.00 0.00 1.75
4149 12025 5.495640 AGAACTCTTGGGCTTTGAGATAAG 58.504 41.667 7.82 0.00 0.00 1.73
4150 12026 4.227864 ACTCTTGGGCTTTGAGATAAGG 57.772 45.455 7.82 0.00 0.00 2.69
4151 12027 3.054065 ACTCTTGGGCTTTGAGATAAGGG 60.054 47.826 7.82 0.00 0.00 3.95
4152 12028 2.919602 TCTTGGGCTTTGAGATAAGGGT 59.080 45.455 0.00 0.00 0.00 4.34
4153 12029 3.333680 TCTTGGGCTTTGAGATAAGGGTT 59.666 43.478 0.00 0.00 0.00 4.11
4154 12030 3.825908 TGGGCTTTGAGATAAGGGTTT 57.174 42.857 0.00 0.00 0.00 3.27
4155 12031 4.938575 TGGGCTTTGAGATAAGGGTTTA 57.061 40.909 0.00 0.00 0.00 2.01
4156 12032 5.263872 TGGGCTTTGAGATAAGGGTTTAA 57.736 39.130 0.00 0.00 0.00 1.52
4157 12033 5.646215 TGGGCTTTGAGATAAGGGTTTAAA 58.354 37.500 0.00 0.00 0.00 1.52
4158 12034 5.714806 TGGGCTTTGAGATAAGGGTTTAAAG 59.285 40.000 0.00 0.00 0.00 1.85
4159 12035 5.949952 GGGCTTTGAGATAAGGGTTTAAAGA 59.050 40.000 0.00 0.00 0.00 2.52
4160 12036 6.436218 GGGCTTTGAGATAAGGGTTTAAAGAA 59.564 38.462 0.00 0.00 0.00 2.52
4161 12037 7.124298 GGGCTTTGAGATAAGGGTTTAAAGAAT 59.876 37.037 0.00 0.00 0.00 2.40
4162 12038 8.531982 GGCTTTGAGATAAGGGTTTAAAGAATT 58.468 33.333 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.112113 GCTCTGATGTAGAACCGGGA 58.888 55.000 6.32 0.00 34.32 5.14
1 2 0.105039 GGCTCTGATGTAGAACCGGG 59.895 60.000 6.32 0.00 32.30 5.73
3 4 2.166459 TCAAGGCTCTGATGTAGAACCG 59.834 50.000 0.00 0.00 44.76 4.44
4 5 3.895232 TCAAGGCTCTGATGTAGAACC 57.105 47.619 0.00 0.00 41.19 3.62
5 6 5.163468 TGAGATCAAGGCTCTGATGTAGAAC 60.163 44.000 14.20 2.89 36.15 3.01
6 7 4.958581 TGAGATCAAGGCTCTGATGTAGAA 59.041 41.667 14.20 1.81 36.15 2.10
7 8 4.540715 TGAGATCAAGGCTCTGATGTAGA 58.459 43.478 14.20 2.32 36.15 2.59
8 9 4.796946 GCTGAGATCAAGGCTCTGATGTAG 60.797 50.000 14.20 10.82 36.15 2.74
9 10 3.069300 GCTGAGATCAAGGCTCTGATGTA 59.931 47.826 14.20 3.50 36.15 2.29
10 11 2.158928 GCTGAGATCAAGGCTCTGATGT 60.159 50.000 14.20 11.26 36.15 3.06
11 12 2.485903 GCTGAGATCAAGGCTCTGATG 58.514 52.381 14.20 0.00 36.15 3.07
12 13 1.417145 GGCTGAGATCAAGGCTCTGAT 59.583 52.381 12.93 10.59 38.79 2.90
13 14 0.829333 GGCTGAGATCAAGGCTCTGA 59.171 55.000 12.93 0.00 34.43 3.27
14 15 0.540454 TGGCTGAGATCAAGGCTCTG 59.460 55.000 18.69 0.00 35.29 3.35
15 16 0.540923 GTGGCTGAGATCAAGGCTCT 59.459 55.000 18.69 0.00 33.57 4.09
16 17 0.540923 AGTGGCTGAGATCAAGGCTC 59.459 55.000 18.69 15.81 0.00 4.70
17 18 1.871418 TAGTGGCTGAGATCAAGGCT 58.129 50.000 18.69 6.35 0.00 4.58
18 19 2.093235 ACTTAGTGGCTGAGATCAAGGC 60.093 50.000 13.22 13.22 0.00 4.35
19 20 3.055530 ACACTTAGTGGCTGAGATCAAGG 60.056 47.826 17.21 0.00 37.94 3.61
20 21 4.180057 GACACTTAGTGGCTGAGATCAAG 58.820 47.826 17.21 0.00 38.75 3.02
21 22 3.055819 GGACACTTAGTGGCTGAGATCAA 60.056 47.826 18.45 0.00 42.03 2.57
22 23 2.497675 GGACACTTAGTGGCTGAGATCA 59.502 50.000 18.45 0.00 42.03 2.92
23 24 2.763448 AGGACACTTAGTGGCTGAGATC 59.237 50.000 18.45 3.38 42.03 2.75
24 25 2.826488 AGGACACTTAGTGGCTGAGAT 58.174 47.619 18.45 0.00 42.03 2.75
25 26 2.310779 AGGACACTTAGTGGCTGAGA 57.689 50.000 18.45 0.00 42.03 3.27
26 27 4.437239 CATAAGGACACTTAGTGGCTGAG 58.563 47.826 18.45 0.63 42.03 3.35
27 28 3.369471 GCATAAGGACACTTAGTGGCTGA 60.369 47.826 18.45 4.02 42.03 4.26
28 29 2.939103 GCATAAGGACACTTAGTGGCTG 59.061 50.000 18.45 9.38 42.03 4.85
29 30 2.092914 GGCATAAGGACACTTAGTGGCT 60.093 50.000 18.45 1.35 42.03 4.75
30 31 2.289565 GGCATAAGGACACTTAGTGGC 58.710 52.381 17.21 14.01 42.13 5.01
31 32 2.167693 TCGGCATAAGGACACTTAGTGG 59.832 50.000 17.21 0.00 42.13 4.00
32 33 3.520290 TCGGCATAAGGACACTTAGTG 57.480 47.619 11.21 11.21 42.13 2.74
33 34 3.961408 AGATCGGCATAAGGACACTTAGT 59.039 43.478 0.00 0.00 42.13 2.24
34 35 4.592485 AGATCGGCATAAGGACACTTAG 57.408 45.455 0.00 0.00 42.13 2.18
35 36 4.891168 TGTAGATCGGCATAAGGACACTTA 59.109 41.667 0.00 0.00 42.95 2.24
36 37 3.704566 TGTAGATCGGCATAAGGACACTT 59.295 43.478 0.00 0.00 40.74 3.16
37 38 3.296854 TGTAGATCGGCATAAGGACACT 58.703 45.455 0.00 0.00 0.00 3.55
38 39 3.728076 TGTAGATCGGCATAAGGACAC 57.272 47.619 0.00 0.00 0.00 3.67
39 40 6.437477 AGATTATGTAGATCGGCATAAGGACA 59.563 38.462 21.00 7.03 39.82 4.02
40 41 6.754209 CAGATTATGTAGATCGGCATAAGGAC 59.246 42.308 21.00 16.44 39.82 3.85
41 42 6.437477 ACAGATTATGTAGATCGGCATAAGGA 59.563 38.462 21.00 7.53 41.60 3.36
42 43 6.634805 ACAGATTATGTAGATCGGCATAAGG 58.365 40.000 21.00 16.85 41.60 2.69
43 44 8.462811 AGTACAGATTATGTAGATCGGCATAAG 58.537 37.037 21.00 14.22 45.06 1.73
44 45 8.244113 CAGTACAGATTATGTAGATCGGCATAA 58.756 37.037 19.69 19.69 45.06 1.90
45 46 7.628580 GCAGTACAGATTATGTAGATCGGCATA 60.629 40.741 0.00 7.78 45.06 3.14
46 47 6.625362 CAGTACAGATTATGTAGATCGGCAT 58.375 40.000 9.40 9.40 45.06 4.40
47 48 5.564848 GCAGTACAGATTATGTAGATCGGCA 60.565 44.000 0.00 0.00 45.06 5.69
48 49 4.859798 GCAGTACAGATTATGTAGATCGGC 59.140 45.833 0.00 0.00 45.06 5.54
49 50 6.013842 TGCAGTACAGATTATGTAGATCGG 57.986 41.667 0.00 0.00 45.06 4.18
50 51 8.237267 TGTATGCAGTACAGATTATGTAGATCG 58.763 37.037 0.00 0.00 45.06 3.69
51 52 9.914131 TTGTATGCAGTACAGATTATGTAGATC 57.086 33.333 0.00 0.00 45.06 2.75
55 56 9.884636 ACTTTTGTATGCAGTACAGATTATGTA 57.115 29.630 0.00 0.00 43.79 2.29
56 57 8.792830 ACTTTTGTATGCAGTACAGATTATGT 57.207 30.769 0.00 0.00 43.79 2.29
64 65 8.322828 TCCCTTATTACTTTTGTATGCAGTACA 58.677 33.333 0.00 0.00 41.46 2.90
86 87 8.523658 GCTTACTTTTGTTGAATCTATTTCCCT 58.476 33.333 0.00 0.00 33.04 4.20
88 89 8.234546 TCGCTTACTTTTGTTGAATCTATTTCC 58.765 33.333 0.00 0.00 33.04 3.13
89 90 9.607285 TTCGCTTACTTTTGTTGAATCTATTTC 57.393 29.630 0.00 0.00 34.72 2.17
97 98 8.696410 AAAGAATTTCGCTTACTTTTGTTGAA 57.304 26.923 0.00 0.00 27.08 2.69
98 99 8.696410 AAAAGAATTTCGCTTACTTTTGTTGA 57.304 26.923 0.00 0.00 37.28 3.18
144 146 6.093771 TGCACCGTTTTACCGAATAAACATAT 59.906 34.615 0.00 0.00 34.68 1.78
145 147 5.410746 TGCACCGTTTTACCGAATAAACATA 59.589 36.000 0.00 0.00 34.68 2.29
153 155 1.376543 TGTTGCACCGTTTTACCGAA 58.623 45.000 0.00 0.00 0.00 4.30
177 179 3.150767 CAGGTGATTACGGGGTCAAAAA 58.849 45.455 0.00 0.00 0.00 1.94
206 208 9.148104 CGCTAAAGTTGTTACTACCTAAATCTT 57.852 33.333 0.00 0.00 33.17 2.40
208 210 8.471361 ACGCTAAAGTTGTTACTACCTAAATC 57.529 34.615 0.00 0.00 33.17 2.17
213 215 8.906867 TCATATACGCTAAAGTTGTTACTACCT 58.093 33.333 0.00 0.00 33.17 3.08
229 231 4.449068 CGGCAGATTTTTCTCATATACGCT 59.551 41.667 0.00 0.00 0.00 5.07
231 233 6.420903 TCTTCGGCAGATTTTTCTCATATACG 59.579 38.462 0.00 0.00 0.00 3.06
233 235 8.908786 ATTCTTCGGCAGATTTTTCTCATATA 57.091 30.769 0.00 0.00 0.00 0.86
234 236 7.718753 AGATTCTTCGGCAGATTTTTCTCATAT 59.281 33.333 0.00 0.00 0.00 1.78
340 350 0.318107 GCGTGATGTTGTGCAAAGCT 60.318 50.000 0.00 0.00 0.00 3.74
358 368 3.282885 CTTGGGAGATTCTAGTTTGGGC 58.717 50.000 0.00 0.00 0.00 5.36
359 369 3.267031 ACCTTGGGAGATTCTAGTTTGGG 59.733 47.826 0.00 0.00 0.00 4.12
385 395 2.819608 TCCTGCAGAAAAGGAAAATCCG 59.180 45.455 17.39 0.00 42.75 4.18
398 408 3.675348 AATCCATCCATTTCCTGCAGA 57.325 42.857 17.39 0.00 0.00 4.26
399 409 4.891756 AGTTAATCCATCCATTTCCTGCAG 59.108 41.667 6.78 6.78 0.00 4.41
403 413 7.561356 CCTTTGTAGTTAATCCATCCATTTCCT 59.439 37.037 0.00 0.00 0.00 3.36
450 2274 3.192922 GCCGTCGGTTTCATCGGG 61.193 66.667 13.94 0.00 42.71 5.14
462 3261 0.038892 TTTCTGGTACTGTCGCCGTC 60.039 55.000 0.00 0.00 0.00 4.79
475 3274 4.450080 GGTTTAGTAGACGTGGTTTTCTGG 59.550 45.833 0.00 0.00 0.00 3.86
507 3306 0.474854 TGACCCCCTAAGCTCCACAA 60.475 55.000 0.00 0.00 0.00 3.33
519 3318 3.292492 AGGACGATTAAATTGACCCCC 57.708 47.619 0.00 0.00 0.00 5.40
527 3326 4.022503 GGACGTAGGCTAGGACGATTAAAT 60.023 45.833 20.18 0.00 41.60 1.40
563 3362 0.547075 TGGTGAAAAGTTGTCCGGGA 59.453 50.000 0.00 0.00 0.00 5.14
728 4998 3.017581 CCCCTCCCTCCAACCAGG 61.018 72.222 0.00 0.00 39.47 4.45
782 5058 0.816421 CGATGATGTGATGGCTGGCA 60.816 55.000 6.31 6.31 0.00 4.92
832 5112 4.840005 GTGCGGGTGGCCTAGAGC 62.840 72.222 3.32 5.54 42.61 4.09
833 5113 3.077556 AGTGCGGGTGGCCTAGAG 61.078 66.667 3.32 0.00 42.61 2.43
834 5114 3.075005 GAGTGCGGGTGGCCTAGA 61.075 66.667 3.32 0.00 42.61 2.43
835 5115 4.514577 CGAGTGCGGGTGGCCTAG 62.515 72.222 3.32 0.00 42.61 3.02
852 5173 3.072211 GCCGGGCCTTTATATAAGTGTC 58.928 50.000 8.12 0.00 0.00 3.67
1053 5422 1.995484 CAATGATCGTCGTTGTCAGCT 59.005 47.619 10.13 0.00 38.29 4.24
1060 5429 0.095245 CGCTTGCAATGATCGTCGTT 59.905 50.000 0.00 0.00 0.00 3.85
1110 5491 0.959372 ACATCCTCGACGACGACCTT 60.959 55.000 5.75 0.00 43.81 3.50
1287 5668 1.670083 GACGGCGCCCTTGTAAACT 60.670 57.895 23.46 0.00 0.00 2.66
1290 5671 3.682885 TCGACGGCGCCCTTGTAA 61.683 61.111 23.46 2.03 37.46 2.41
1561 5998 1.402259 CCGCTCATGAACTCGTAGACT 59.598 52.381 0.00 0.00 0.00 3.24
1626 6067 3.760151 CTGATGAACCAGATGGCAGAAAA 59.240 43.478 0.00 0.00 39.32 2.29
1969 6576 4.201679 CGCGGTAGATCACGGGCA 62.202 66.667 0.00 0.00 36.29 5.36
1973 6580 0.098200 TGAAGTCGCGGTAGATCACG 59.902 55.000 6.13 0.00 0.00 4.35
2006 6613 0.179108 GGCTTACCGAGTCGAGCAAT 60.179 55.000 21.74 3.47 36.87 3.56
2026 6637 3.749609 GCAAAAAGTCTAAAGCTACGGGA 59.250 43.478 0.00 0.00 0.00 5.14
2033 6644 8.185003 TCTTTTCTTTGCAAAAAGTCTAAAGC 57.815 30.769 13.84 0.00 42.00 3.51
2037 6648 6.472163 CGCTTCTTTTCTTTGCAAAAAGTCTA 59.528 34.615 13.84 4.38 42.00 2.59
2045 6656 3.518634 AACCGCTTCTTTTCTTTGCAA 57.481 38.095 0.00 0.00 0.00 4.08
2062 6673 8.284693 CCAAATGAATGAGACATTTTCAAAACC 58.715 33.333 0.00 0.00 43.22 3.27
2079 6693 4.766891 CACCACTACAGTTCCCAAATGAAT 59.233 41.667 0.00 0.00 0.00 2.57
2147 6765 5.300034 TCAGTCAGTTTCGTAGTAGTTCCAA 59.700 40.000 0.00 0.00 0.00 3.53
2153 6771 4.617645 GCTTGTCAGTCAGTTTCGTAGTAG 59.382 45.833 0.00 0.00 0.00 2.57
2273 6923 4.724399 TGCACCCAAGAATCTTCAAAGTA 58.276 39.130 0.00 0.00 0.00 2.24
2277 6927 3.507233 GTCATGCACCCAAGAATCTTCAA 59.493 43.478 0.00 0.00 0.00 2.69
2291 6941 5.766222 AGATTTCTCAAGTTTGTCATGCAC 58.234 37.500 0.00 0.00 0.00 4.57
2319 6969 4.679373 ATGTGGTGAAGCTAGGACATAG 57.321 45.455 0.00 0.00 34.31 2.23
2320 6970 5.661312 ACTTATGTGGTGAAGCTAGGACATA 59.339 40.000 0.00 0.00 0.00 2.29
2359 7011 4.343231 TGTGAATTACTACTCCGTGGGTA 58.657 43.478 0.00 0.00 0.00 3.69
2366 7018 7.148623 GCACTACAGTTTGTGAATTACTACTCC 60.149 40.741 9.71 0.00 36.38 3.85
2369 7021 7.416154 TGCACTACAGTTTGTGAATTACTAC 57.584 36.000 9.71 0.00 36.38 2.73
2587 7243 1.212688 TGCATAACCATGAGTCCCCAG 59.787 52.381 0.00 0.00 33.67 4.45
2642 7300 6.931281 GCCAAAGCTATATACATCACTCTTGA 59.069 38.462 0.00 0.00 33.87 3.02
2679 7337 0.753848 GTAGCCCGGAGAGAAGCTCT 60.754 60.000 0.73 0.00 44.28 4.09
2865 7523 2.838202 CCTAGACTTTGGGTTCTGGCTA 59.162 50.000 0.00 0.00 0.00 3.93
2919 7577 0.106868 CTTGCATGCTGAGGATGGGA 60.107 55.000 20.33 0.00 0.00 4.37
2923 7581 2.239150 AGAAGTCTTGCATGCTGAGGAT 59.761 45.455 20.33 6.49 0.00 3.24
2935 7593 1.882623 GCCCACAGGAAAGAAGTCTTG 59.117 52.381 0.00 0.00 36.12 3.02
2994 7652 0.391661 CCTCCACCTTCATGTCCACG 60.392 60.000 0.00 0.00 0.00 4.94
3165 10954 1.828660 CTCCCGGTGGTAGCTCGAT 60.829 63.158 0.00 0.00 0.00 3.59
3184 10973 2.830293 ACCTTAGTCTTGTACCCCTCC 58.170 52.381 0.00 0.00 0.00 4.30
3191 11044 5.479375 CACACTTCCCTACCTTAGTCTTGTA 59.521 44.000 0.00 0.00 0.00 2.41
3193 11046 4.283722 ACACACTTCCCTACCTTAGTCTTG 59.716 45.833 0.00 0.00 0.00 3.02
3214 11068 3.008485 TGTGCACACCATATTGTCCTACA 59.992 43.478 17.42 0.00 0.00 2.74
3230 11084 8.515414 TGTATCACATCTCTATACTATGTGCAC 58.485 37.037 10.75 10.75 46.43 4.57
3308 11168 6.015519 CCACATGAGACCTTTCCAAAAATACA 60.016 38.462 0.00 0.00 0.00 2.29
3309 11169 6.389906 CCACATGAGACCTTTCCAAAAATAC 58.610 40.000 0.00 0.00 0.00 1.89
3310 11170 5.047377 GCCACATGAGACCTTTCCAAAAATA 60.047 40.000 0.00 0.00 0.00 1.40
3311 11171 4.262592 GCCACATGAGACCTTTCCAAAAAT 60.263 41.667 0.00 0.00 0.00 1.82
3412 11272 5.814705 ACAATCCTTGCGAAAATCAAAAACA 59.185 32.000 0.00 0.00 0.00 2.83
3414 11274 6.980978 TGTACAATCCTTGCGAAAATCAAAAA 59.019 30.769 0.00 0.00 0.00 1.94
3437 11297 2.880443 AGGCCATTCACAACATCTTGT 58.120 42.857 5.01 0.00 41.61 3.16
3515 11377 4.341806 TCTCACTTGCAAACAATGGACAAT 59.658 37.500 0.00 0.00 34.61 2.71
3528 11390 7.881775 TCTAGTAATACTCATCTCACTTGCA 57.118 36.000 0.00 0.00 0.00 4.08
3580 11442 4.580995 TCAATTTCCCTGTGCGAAGTTTTA 59.419 37.500 0.00 0.00 0.00 1.52
3586 11448 3.860378 GCATTTCAATTTCCCTGTGCGAA 60.860 43.478 0.00 0.00 0.00 4.70
3594 11456 8.365647 AGATGATAATCTGCATTTCAATTTCCC 58.634 33.333 0.00 0.00 0.00 3.97
3600 11462 8.301720 GGCATAAGATGATAATCTGCATTTCAA 58.698 33.333 5.40 0.00 0.00 2.69
3601 11463 7.361457 CGGCATAAGATGATAATCTGCATTTCA 60.361 37.037 5.40 0.00 0.00 2.69
3606 11468 5.047092 TCTCGGCATAAGATGATAATCTGCA 60.047 40.000 5.40 0.00 0.00 4.41
3614 11476 4.661222 TCTCTCTCTCGGCATAAGATGAT 58.339 43.478 0.00 0.00 0.00 2.45
3692 11554 4.454504 GCCACTTATCCTTCTTTTCAACGA 59.545 41.667 0.00 0.00 0.00 3.85
3702 11573 4.846779 TTTGTGTTGCCACTTATCCTTC 57.153 40.909 0.00 0.00 42.34 3.46
3710 11581 2.758009 GCATTCATTTGTGTTGCCACT 58.242 42.857 0.00 0.00 42.34 4.00
3722 11595 9.822185 GTTCTTTATTTCAATAGGGCATTCATT 57.178 29.630 0.00 0.00 0.00 2.57
3726 11599 7.257722 CACGTTCTTTATTTCAATAGGGCATT 58.742 34.615 0.00 0.00 0.00 3.56
3728 11601 5.124776 CCACGTTCTTTATTTCAATAGGGCA 59.875 40.000 0.00 0.00 0.00 5.36
3729 11602 5.355910 TCCACGTTCTTTATTTCAATAGGGC 59.644 40.000 0.00 0.00 0.00 5.19
3730 11603 6.995511 TCCACGTTCTTTATTTCAATAGGG 57.004 37.500 0.00 0.00 0.00 3.53
3759 11635 8.112183 CCCAATAATTATAGGCTCAAGGAATCT 58.888 37.037 0.00 0.00 0.00 2.40
3762 11638 7.161715 ACCCAATAATTATAGGCTCAAGGAA 57.838 36.000 12.35 0.00 0.00 3.36
3763 11639 6.780198 ACCCAATAATTATAGGCTCAAGGA 57.220 37.500 12.35 0.00 0.00 3.36
3764 11640 8.383175 TCTAACCCAATAATTATAGGCTCAAGG 58.617 37.037 12.35 2.88 0.00 3.61
3769 11645 8.733808 ACCTTTCTAACCCAATAATTATAGGCT 58.266 33.333 12.35 0.00 0.00 4.58
3770 11646 8.793592 CACCTTTCTAACCCAATAATTATAGGC 58.206 37.037 12.35 0.00 0.00 3.93
3773 11649 9.016243 TCCCACCTTTCTAACCCAATAATTATA 57.984 33.333 0.00 0.00 0.00 0.98
3774 11650 7.889178 TCCCACCTTTCTAACCCAATAATTAT 58.111 34.615 0.00 0.00 0.00 1.28
3775 11651 7.286667 TCCCACCTTTCTAACCCAATAATTA 57.713 36.000 0.00 0.00 0.00 1.40
3780 11656 3.371595 CGATCCCACCTTTCTAACCCAAT 60.372 47.826 0.00 0.00 0.00 3.16
3795 11671 3.034721 GTGTGTTACTTCACGATCCCA 57.965 47.619 0.00 0.00 40.74 4.37
3803 11679 2.030893 CCGGAGTACGTGTGTTACTTCA 60.031 50.000 0.00 0.00 42.24 3.02
3804 11680 2.226437 TCCGGAGTACGTGTGTTACTTC 59.774 50.000 0.00 0.00 42.24 3.01
3816 11692 1.206610 GGGTTCTTCCTTCCGGAGTAC 59.793 57.143 3.34 0.00 41.25 2.73
3820 11696 0.908180 GAGGGGTTCTTCCTTCCGGA 60.908 60.000 0.00 0.00 37.60 5.14
3821 11697 1.198759 TGAGGGGTTCTTCCTTCCGG 61.199 60.000 0.00 0.00 34.21 5.14
3823 11699 2.971901 TTTGAGGGGTTCTTCCTTCC 57.028 50.000 0.00 0.00 34.21 3.46
3842 11718 5.269189 TGGTTTCTTCCTTCCAGAGTTTTT 58.731 37.500 0.00 0.00 0.00 1.94
3843 11719 4.867086 TGGTTTCTTCCTTCCAGAGTTTT 58.133 39.130 0.00 0.00 0.00 2.43
3844 11720 4.519906 TGGTTTCTTCCTTCCAGAGTTT 57.480 40.909 0.00 0.00 0.00 2.66
3845 11721 4.401925 CATGGTTTCTTCCTTCCAGAGTT 58.598 43.478 0.00 0.00 33.33 3.01
3846 11722 3.812167 GCATGGTTTCTTCCTTCCAGAGT 60.812 47.826 0.00 0.00 33.33 3.24
3847 11723 2.751806 GCATGGTTTCTTCCTTCCAGAG 59.248 50.000 0.00 0.00 33.33 3.35
3848 11724 2.108075 TGCATGGTTTCTTCCTTCCAGA 59.892 45.455 0.00 0.00 33.33 3.86
3849 11725 2.517959 TGCATGGTTTCTTCCTTCCAG 58.482 47.619 0.00 0.00 33.33 3.86
3850 11726 2.673775 TGCATGGTTTCTTCCTTCCA 57.326 45.000 0.00 0.00 0.00 3.53
3851 11727 2.417787 GCATGCATGGTTTCTTCCTTCC 60.418 50.000 27.34 2.70 0.00 3.46
3882 11758 7.335171 CCATCACTCTTAATTGAATCTCACACA 59.665 37.037 0.00 0.00 0.00 3.72
3885 11761 7.226325 CCTCCATCACTCTTAATTGAATCTCAC 59.774 40.741 0.00 0.00 0.00 3.51
3886 11762 7.126268 TCCTCCATCACTCTTAATTGAATCTCA 59.874 37.037 0.00 0.00 0.00 3.27
3891 11767 7.772292 CAGAATCCTCCATCACTCTTAATTGAA 59.228 37.037 0.00 0.00 0.00 2.69
3892 11768 7.278135 CAGAATCCTCCATCACTCTTAATTGA 58.722 38.462 0.00 0.00 0.00 2.57
3893 11769 6.017275 GCAGAATCCTCCATCACTCTTAATTG 60.017 42.308 0.00 0.00 0.00 2.32
3894 11770 6.060788 GCAGAATCCTCCATCACTCTTAATT 58.939 40.000 0.00 0.00 0.00 1.40
3895 11771 5.619220 GCAGAATCCTCCATCACTCTTAAT 58.381 41.667 0.00 0.00 0.00 1.40
3896 11772 4.442052 CGCAGAATCCTCCATCACTCTTAA 60.442 45.833 0.00 0.00 0.00 1.85
3897 11773 3.068732 CGCAGAATCCTCCATCACTCTTA 59.931 47.826 0.00 0.00 0.00 2.10
3898 11774 2.158986 CGCAGAATCCTCCATCACTCTT 60.159 50.000 0.00 0.00 0.00 2.85
3899 11775 1.411977 CGCAGAATCCTCCATCACTCT 59.588 52.381 0.00 0.00 0.00 3.24
3900 11776 1.539929 CCGCAGAATCCTCCATCACTC 60.540 57.143 0.00 0.00 0.00 3.51
3901 11777 0.467384 CCGCAGAATCCTCCATCACT 59.533 55.000 0.00 0.00 0.00 3.41
3902 11778 0.465705 TCCGCAGAATCCTCCATCAC 59.534 55.000 0.00 0.00 0.00 3.06
3903 11779 1.203237 TTCCGCAGAATCCTCCATCA 58.797 50.000 0.00 0.00 0.00 3.07
3904 11780 2.557920 ATTCCGCAGAATCCTCCATC 57.442 50.000 0.00 0.00 38.36 3.51
3912 11788 6.117488 TGCATATATCATGATTCCGCAGAAT 58.883 36.000 14.65 0.00 45.63 2.40
3913 11789 5.490159 TGCATATATCATGATTCCGCAGAA 58.510 37.500 14.65 0.00 36.15 3.02
3914 11790 5.088680 TGCATATATCATGATTCCGCAGA 57.911 39.130 14.65 0.00 0.00 4.26
3915 11791 5.748592 CATGCATATATCATGATTCCGCAG 58.251 41.667 14.65 8.27 42.84 5.18
3916 11792 4.035909 GCATGCATATATCATGATTCCGCA 59.964 41.667 14.65 16.93 42.84 5.69
3917 11793 4.534168 GCATGCATATATCATGATTCCGC 58.466 43.478 14.65 12.04 42.84 5.54
3918 11794 4.769215 CGCATGCATATATCATGATTCCG 58.231 43.478 19.57 13.65 42.84 4.30
3919 11795 4.534168 GCGCATGCATATATCATGATTCC 58.466 43.478 19.57 0.00 42.84 3.01
3920 11796 4.035909 TGGCGCATGCATATATCATGATTC 59.964 41.667 19.57 12.44 42.84 2.52
3921 11797 3.949113 TGGCGCATGCATATATCATGATT 59.051 39.130 19.57 4.68 42.84 2.57
3922 11798 3.314357 GTGGCGCATGCATATATCATGAT 59.686 43.478 19.57 13.81 42.84 2.45
3923 11799 2.679336 GTGGCGCATGCATATATCATGA 59.321 45.455 19.57 0.00 42.84 3.07
3924 11800 2.538132 CGTGGCGCATGCATATATCATG 60.538 50.000 19.57 15.32 45.35 3.07
3925 11801 1.667212 CGTGGCGCATGCATATATCAT 59.333 47.619 19.57 0.00 45.35 2.45
3926 11802 1.077915 CGTGGCGCATGCATATATCA 58.922 50.000 19.57 3.16 45.35 2.15
3927 11803 0.374758 CCGTGGCGCATGCATATATC 59.625 55.000 19.57 1.71 45.35 1.63
3928 11804 1.026182 CCCGTGGCGCATGCATATAT 61.026 55.000 19.57 0.00 45.35 0.86
3929 11805 1.670730 CCCGTGGCGCATGCATATA 60.671 57.895 19.57 0.00 45.35 0.86
3930 11806 2.979676 CCCGTGGCGCATGCATAT 60.980 61.111 19.57 0.00 45.35 1.78
3943 11819 3.292481 TTAGGACGAGAGCCCCCGT 62.292 63.158 0.00 0.00 42.17 5.28
3944 11820 2.441532 TTAGGACGAGAGCCCCCG 60.442 66.667 0.00 0.00 31.82 5.73
3945 11821 1.049289 ATGTTAGGACGAGAGCCCCC 61.049 60.000 0.00 0.00 31.82 5.40
3946 11822 0.389757 GATGTTAGGACGAGAGCCCC 59.610 60.000 0.00 0.00 31.82 5.80
3947 11823 1.112113 TGATGTTAGGACGAGAGCCC 58.888 55.000 0.00 0.00 0.00 5.19
3948 11824 2.288518 GGATGATGTTAGGACGAGAGCC 60.289 54.545 0.00 0.00 0.00 4.70
3949 11825 2.625790 AGGATGATGTTAGGACGAGAGC 59.374 50.000 0.00 0.00 0.00 4.09
3950 11826 5.067273 AGTAGGATGATGTTAGGACGAGAG 58.933 45.833 0.00 0.00 0.00 3.20
3951 11827 5.050126 AGTAGGATGATGTTAGGACGAGA 57.950 43.478 0.00 0.00 0.00 4.04
3952 11828 5.776173 AAGTAGGATGATGTTAGGACGAG 57.224 43.478 0.00 0.00 0.00 4.18
3953 11829 7.002276 TCATAAGTAGGATGATGTTAGGACGA 58.998 38.462 0.00 0.00 0.00 4.20
3954 11830 7.175119 TCTCATAAGTAGGATGATGTTAGGACG 59.825 40.741 0.00 0.00 32.96 4.79
3955 11831 8.410673 TCTCATAAGTAGGATGATGTTAGGAC 57.589 38.462 0.00 0.00 32.96 3.85
3956 11832 9.083422 CTTCTCATAAGTAGGATGATGTTAGGA 57.917 37.037 0.00 0.00 32.96 2.94
3957 11833 8.865090 ACTTCTCATAAGTAGGATGATGTTAGG 58.135 37.037 0.00 0.00 32.96 2.69
3961 11837 9.647918 TCTAACTTCTCATAAGTAGGATGATGT 57.352 33.333 0.00 0.00 32.96 3.06
3962 11838 9.906660 GTCTAACTTCTCATAAGTAGGATGATG 57.093 37.037 0.00 0.00 32.96 3.07
3963 11839 9.647918 TGTCTAACTTCTCATAAGTAGGATGAT 57.352 33.333 0.00 0.00 32.96 2.45
3964 11840 9.475620 TTGTCTAACTTCTCATAAGTAGGATGA 57.524 33.333 0.00 0.00 0.00 2.92
3965 11841 9.743057 CTTGTCTAACTTCTCATAAGTAGGATG 57.257 37.037 0.00 0.00 0.00 3.51
3966 11842 9.702253 TCTTGTCTAACTTCTCATAAGTAGGAT 57.298 33.333 0.00 0.00 0.00 3.24
3967 11843 9.702253 ATCTTGTCTAACTTCTCATAAGTAGGA 57.298 33.333 0.00 0.00 0.00 2.94
3981 11857 9.601217 GTGGACACATTAATATCTTGTCTAACT 57.399 33.333 13.88 0.00 37.36 2.24
3982 11858 8.827677 GGTGGACACATTAATATCTTGTCTAAC 58.172 37.037 4.69 9.68 37.36 2.34
3983 11859 8.768397 AGGTGGACACATTAATATCTTGTCTAA 58.232 33.333 4.69 5.39 37.36 2.10
3984 11860 8.319057 AGGTGGACACATTAATATCTTGTCTA 57.681 34.615 4.69 8.55 37.36 2.59
3985 11861 7.200434 AGGTGGACACATTAATATCTTGTCT 57.800 36.000 4.69 0.00 37.36 3.41
3986 11862 7.201732 CCAAGGTGGACACATTAATATCTTGTC 60.202 40.741 1.78 7.57 40.96 3.18
3987 11863 6.603201 CCAAGGTGGACACATTAATATCTTGT 59.397 38.462 1.78 0.30 40.96 3.16
3988 11864 6.039717 CCCAAGGTGGACACATTAATATCTTG 59.960 42.308 1.78 4.84 40.96 3.02
3989 11865 6.069088 TCCCAAGGTGGACACATTAATATCTT 60.069 38.462 1.78 0.00 40.96 2.40
3990 11866 5.431731 TCCCAAGGTGGACACATTAATATCT 59.568 40.000 1.78 0.00 40.96 1.98
3991 11867 5.690865 TCCCAAGGTGGACACATTAATATC 58.309 41.667 1.78 0.00 40.96 1.63
3992 11868 5.399038 CCTCCCAAGGTGGACACATTAATAT 60.399 44.000 1.78 0.00 40.96 1.28
3993 11869 4.080015 CCTCCCAAGGTGGACACATTAATA 60.080 45.833 1.78 0.00 40.96 0.98
3994 11870 3.309121 CCTCCCAAGGTGGACACATTAAT 60.309 47.826 1.78 0.00 40.96 1.40
3995 11871 2.041081 CCTCCCAAGGTGGACACATTAA 59.959 50.000 1.78 0.00 40.96 1.40
3996 11872 1.633432 CCTCCCAAGGTGGACACATTA 59.367 52.381 1.78 0.00 40.96 1.90
3997 11873 0.405585 CCTCCCAAGGTGGACACATT 59.594 55.000 4.69 0.17 40.96 2.71
3998 11874 0.475632 TCCTCCCAAGGTGGACACAT 60.476 55.000 4.69 0.00 40.01 3.21
3999 11875 0.696143 TTCCTCCCAAGGTGGACACA 60.696 55.000 3.93 0.00 43.88 3.72
4000 11876 0.476771 TTTCCTCCCAAGGTGGACAC 59.523 55.000 3.93 0.00 43.88 3.67
4001 11877 1.227249 TTTTCCTCCCAAGGTGGACA 58.773 50.000 3.93 0.00 43.88 4.02
4002 11878 2.375014 TTTTTCCTCCCAAGGTGGAC 57.625 50.000 3.93 0.00 43.88 4.02
4003 11879 3.245479 GGTATTTTTCCTCCCAAGGTGGA 60.245 47.826 0.24 0.24 42.72 4.02
4004 11880 3.096852 GGTATTTTTCCTCCCAAGGTGG 58.903 50.000 0.00 0.00 43.82 4.61
4005 11881 3.096852 GGGTATTTTTCCTCCCAAGGTG 58.903 50.000 0.00 0.00 43.82 4.00
4006 11882 2.043939 GGGGTATTTTTCCTCCCAAGGT 59.956 50.000 0.00 0.00 43.82 3.50
4007 11883 2.314852 AGGGGTATTTTTCCTCCCAAGG 59.685 50.000 0.00 0.00 44.89 3.61
4008 11884 3.757947 AGGGGTATTTTTCCTCCCAAG 57.242 47.619 0.00 0.00 41.51 3.61
4009 11885 3.403051 TCAAGGGGTATTTTTCCTCCCAA 59.597 43.478 0.00 0.00 41.51 4.12
4010 11886 2.997463 TCAAGGGGTATTTTTCCTCCCA 59.003 45.455 0.00 0.00 41.51 4.37
4011 11887 3.011369 AGTCAAGGGGTATTTTTCCTCCC 59.989 47.826 0.00 0.00 39.22 4.30
4012 11888 4.317530 AGTCAAGGGGTATTTTTCCTCC 57.682 45.455 0.00 0.00 0.00 4.30
4013 11889 7.956328 AAATAGTCAAGGGGTATTTTTCCTC 57.044 36.000 0.00 0.00 0.00 3.71
4014 11890 7.310423 GCAAAATAGTCAAGGGGTATTTTTCCT 60.310 37.037 0.00 0.00 35.25 3.36
4015 11891 6.816640 GCAAAATAGTCAAGGGGTATTTTTCC 59.183 38.462 0.00 0.00 35.25 3.13
4016 11892 7.382898 TGCAAAATAGTCAAGGGGTATTTTTC 58.617 34.615 0.00 0.00 35.25 2.29
4017 11893 7.309770 TGCAAAATAGTCAAGGGGTATTTTT 57.690 32.000 0.00 0.00 35.25 1.94
4018 11894 6.926630 TGCAAAATAGTCAAGGGGTATTTT 57.073 33.333 0.00 0.00 37.00 1.82
4019 11895 6.574269 GCTTGCAAAATAGTCAAGGGGTATTT 60.574 38.462 0.00 0.00 38.05 1.40
4020 11896 5.105351 GCTTGCAAAATAGTCAAGGGGTATT 60.105 40.000 0.00 0.00 38.05 1.89
4021 11897 4.402474 GCTTGCAAAATAGTCAAGGGGTAT 59.598 41.667 0.00 0.00 38.05 2.73
4022 11898 3.761752 GCTTGCAAAATAGTCAAGGGGTA 59.238 43.478 0.00 0.00 38.05 3.69
4023 11899 2.562738 GCTTGCAAAATAGTCAAGGGGT 59.437 45.455 0.00 0.00 38.05 4.95
4024 11900 2.827921 AGCTTGCAAAATAGTCAAGGGG 59.172 45.455 0.00 0.00 38.05 4.79
4025 11901 4.525912 AAGCTTGCAAAATAGTCAAGGG 57.474 40.909 0.00 0.00 38.05 3.95
4026 11902 6.219302 CAAAAGCTTGCAAAATAGTCAAGG 57.781 37.500 0.00 0.00 38.05 3.61
4039 11915 6.911511 CAGAGATTTATCTAGCAAAAGCTTGC 59.088 38.462 0.00 0.00 46.72 4.01
4040 11916 8.121708 GTCAGAGATTTATCTAGCAAAAGCTTG 58.878 37.037 0.00 0.00 37.25 4.01
4041 11917 7.281999 GGTCAGAGATTTATCTAGCAAAAGCTT 59.718 37.037 0.00 0.00 37.25 3.74
4042 11918 6.765512 GGTCAGAGATTTATCTAGCAAAAGCT 59.234 38.462 6.99 6.99 37.25 3.74
4043 11919 6.540189 TGGTCAGAGATTTATCTAGCAAAAGC 59.460 38.462 0.00 0.00 37.25 3.51
4044 11920 8.674263 ATGGTCAGAGATTTATCTAGCAAAAG 57.326 34.615 0.00 0.00 37.25 2.27
4045 11921 9.547753 GTATGGTCAGAGATTTATCTAGCAAAA 57.452 33.333 0.00 0.00 37.25 2.44
4046 11922 8.704668 TGTATGGTCAGAGATTTATCTAGCAAA 58.295 33.333 0.00 0.00 37.25 3.68
4047 11923 8.144478 GTGTATGGTCAGAGATTTATCTAGCAA 58.856 37.037 0.00 0.00 37.25 3.91
4048 11924 7.255977 GGTGTATGGTCAGAGATTTATCTAGCA 60.256 40.741 0.00 0.00 37.25 3.49
4049 11925 7.093992 GGTGTATGGTCAGAGATTTATCTAGC 58.906 42.308 0.00 0.00 37.25 3.42
4050 11926 8.183104 TGGTGTATGGTCAGAGATTTATCTAG 57.817 38.462 0.00 0.00 37.25 2.43
4051 11927 8.727100 ATGGTGTATGGTCAGAGATTTATCTA 57.273 34.615 0.00 0.00 37.25 1.98
4052 11928 7.623999 ATGGTGTATGGTCAGAGATTTATCT 57.376 36.000 0.00 0.00 40.50 1.98
4053 11929 8.682936 AAATGGTGTATGGTCAGAGATTTATC 57.317 34.615 0.00 0.00 0.00 1.75
4054 11930 9.479549 AAAAATGGTGTATGGTCAGAGATTTAT 57.520 29.630 0.00 0.00 0.00 1.40
4055 11931 8.877864 AAAAATGGTGTATGGTCAGAGATTTA 57.122 30.769 0.00 0.00 0.00 1.40
4056 11932 7.781324 AAAAATGGTGTATGGTCAGAGATTT 57.219 32.000 0.00 0.00 0.00 2.17
4057 11933 8.906867 CATAAAAATGGTGTATGGTCAGAGATT 58.093 33.333 0.00 0.00 0.00 2.40
4058 11934 7.503566 CCATAAAAATGGTGTATGGTCAGAGAT 59.496 37.037 0.00 0.00 39.55 2.75
4059 11935 6.828273 CCATAAAAATGGTGTATGGTCAGAGA 59.172 38.462 0.00 0.00 39.55 3.10
4060 11936 6.828273 TCCATAAAAATGGTGTATGGTCAGAG 59.172 38.462 8.40 0.00 43.23 3.35
4061 11937 6.601613 GTCCATAAAAATGGTGTATGGTCAGA 59.398 38.462 8.40 0.00 43.23 3.27
4062 11938 6.376864 TGTCCATAAAAATGGTGTATGGTCAG 59.623 38.462 8.40 0.00 43.23 3.51
4063 11939 6.249192 TGTCCATAAAAATGGTGTATGGTCA 58.751 36.000 8.40 6.76 43.23 4.02
4064 11940 6.767524 TGTCCATAAAAATGGTGTATGGTC 57.232 37.500 8.40 4.57 43.23 4.02
4065 11941 7.732222 AATGTCCATAAAAATGGTGTATGGT 57.268 32.000 8.40 0.00 43.23 3.55
4066 11942 8.359642 CCTAATGTCCATAAAAATGGTGTATGG 58.640 37.037 4.41 3.05 43.83 2.74
4067 11943 8.359642 CCCTAATGTCCATAAAAATGGTGTATG 58.640 37.037 4.41 0.00 42.28 2.39
4068 11944 8.285891 TCCCTAATGTCCATAAAAATGGTGTAT 58.714 33.333 4.41 0.00 42.28 2.29
4069 11945 7.644062 TCCCTAATGTCCATAAAAATGGTGTA 58.356 34.615 4.41 0.00 42.28 2.90
4070 11946 6.498538 TCCCTAATGTCCATAAAAATGGTGT 58.501 36.000 4.41 0.00 42.28 4.16
4071 11947 7.416964 TTCCCTAATGTCCATAAAAATGGTG 57.583 36.000 4.41 0.00 42.28 4.17
4072 11948 8.442660 TTTTCCCTAATGTCCATAAAAATGGT 57.557 30.769 4.41 0.00 42.28 3.55
4080 11956 9.629649 ACCTATCTATTTTCCCTAATGTCCATA 57.370 33.333 0.00 0.00 0.00 2.74
4081 11957 8.525729 ACCTATCTATTTTCCCTAATGTCCAT 57.474 34.615 0.00 0.00 0.00 3.41
4082 11958 7.947782 ACCTATCTATTTTCCCTAATGTCCA 57.052 36.000 0.00 0.00 0.00 4.02
4083 11959 9.945904 CTTACCTATCTATTTTCCCTAATGTCC 57.054 37.037 0.00 0.00 0.00 4.02
4084 11960 9.438228 GCTTACCTATCTATTTTCCCTAATGTC 57.562 37.037 0.00 0.00 0.00 3.06
4085 11961 8.383947 GGCTTACCTATCTATTTTCCCTAATGT 58.616 37.037 0.00 0.00 0.00 2.71
4086 11962 8.794335 GGCTTACCTATCTATTTTCCCTAATG 57.206 38.462 0.00 0.00 0.00 1.90
4107 11983 9.746457 AGAGTTCTCAAATCTAAAAATAGGCTT 57.254 29.630 0.00 0.00 0.00 4.35
4108 11984 9.746457 AAGAGTTCTCAAATCTAAAAATAGGCT 57.254 29.630 0.00 0.00 0.00 4.58
4109 11985 9.780413 CAAGAGTTCTCAAATCTAAAAATAGGC 57.220 33.333 2.64 0.00 0.00 3.93
4112 11988 8.739972 GCCCAAGAGTTCTCAAATCTAAAAATA 58.260 33.333 2.64 0.00 0.00 1.40
4113 11989 7.452813 AGCCCAAGAGTTCTCAAATCTAAAAAT 59.547 33.333 2.64 0.00 0.00 1.82
4114 11990 6.777580 AGCCCAAGAGTTCTCAAATCTAAAAA 59.222 34.615 2.64 0.00 0.00 1.94
4115 11991 6.306987 AGCCCAAGAGTTCTCAAATCTAAAA 58.693 36.000 2.64 0.00 0.00 1.52
4116 11992 5.880901 AGCCCAAGAGTTCTCAAATCTAAA 58.119 37.500 2.64 0.00 0.00 1.85
4117 11993 5.505181 AGCCCAAGAGTTCTCAAATCTAA 57.495 39.130 2.64 0.00 0.00 2.10
4118 11994 5.505181 AAGCCCAAGAGTTCTCAAATCTA 57.495 39.130 2.64 0.00 0.00 1.98
4119 11995 4.379302 AAGCCCAAGAGTTCTCAAATCT 57.621 40.909 2.64 0.00 0.00 2.40
4120 11996 4.520492 TCAAAGCCCAAGAGTTCTCAAATC 59.480 41.667 2.64 0.00 0.00 2.17
4121 11997 4.473444 TCAAAGCCCAAGAGTTCTCAAAT 58.527 39.130 2.64 0.00 0.00 2.32
4122 11998 3.885297 CTCAAAGCCCAAGAGTTCTCAAA 59.115 43.478 2.64 0.00 0.00 2.69
4123 11999 3.136443 TCTCAAAGCCCAAGAGTTCTCAA 59.864 43.478 2.64 0.00 0.00 3.02
4124 12000 2.705658 TCTCAAAGCCCAAGAGTTCTCA 59.294 45.455 2.64 0.00 0.00 3.27
4125 12001 3.409026 TCTCAAAGCCCAAGAGTTCTC 57.591 47.619 0.00 0.00 0.00 2.87
4126 12002 5.495640 CTTATCTCAAAGCCCAAGAGTTCT 58.504 41.667 0.00 0.00 0.00 3.01
4127 12003 4.637977 CCTTATCTCAAAGCCCAAGAGTTC 59.362 45.833 0.00 0.00 0.00 3.01
4128 12004 4.568592 CCCTTATCTCAAAGCCCAAGAGTT 60.569 45.833 0.00 0.00 0.00 3.01
4129 12005 3.054065 CCCTTATCTCAAAGCCCAAGAGT 60.054 47.826 0.00 0.00 0.00 3.24
4130 12006 3.054065 ACCCTTATCTCAAAGCCCAAGAG 60.054 47.826 0.00 0.00 0.00 2.85
4131 12007 2.919602 ACCCTTATCTCAAAGCCCAAGA 59.080 45.455 0.00 0.00 0.00 3.02
4132 12008 3.372440 ACCCTTATCTCAAAGCCCAAG 57.628 47.619 0.00 0.00 0.00 3.61
4133 12009 3.825908 AACCCTTATCTCAAAGCCCAA 57.174 42.857 0.00 0.00 0.00 4.12
4134 12010 3.825908 AAACCCTTATCTCAAAGCCCA 57.174 42.857 0.00 0.00 0.00 5.36
4135 12011 5.949952 TCTTTAAACCCTTATCTCAAAGCCC 59.050 40.000 0.00 0.00 0.00 5.19
4136 12012 7.462571 TTCTTTAAACCCTTATCTCAAAGCC 57.537 36.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.