Multiple sequence alignment - TraesCS5A01G214800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G214800 chr5A 100.000 4009 0 0 1 4009 430040593 430044601 0.000000e+00 7404
1 TraesCS5A01G214800 chr5A 96.629 1068 21 10 893 1956 429998277 429997221 0.000000e+00 1759
2 TraesCS5A01G214800 chr5A 96.045 708 25 3 3 709 128412361 128413066 0.000000e+00 1149
3 TraesCS5A01G214800 chr5A 91.432 817 62 7 2284 3095 429996808 429995995 0.000000e+00 1114
4 TraesCS5A01G214800 chr5A 84.305 943 127 18 999 1929 419830892 419829959 0.000000e+00 902
5 TraesCS5A01G214800 chr5A 85.672 335 30 11 1957 2284 429997179 429996856 1.780000e-88 337
6 TraesCS5A01G214800 chr5B 89.142 3288 254 58 762 3996 378853512 378850275 0.000000e+00 3999
7 TraesCS5A01G214800 chr5B 91.240 1427 64 31 893 2284 378903272 378904672 0.000000e+00 1886
8 TraesCS5A01G214800 chr5B 90.999 811 68 5 2284 3092 378904720 378905527 0.000000e+00 1088
9 TraesCS5A01G214800 chr5B 84.517 943 125 18 999 1929 375224965 375224032 0.000000e+00 913
10 TraesCS5A01G214800 chr5D 94.826 1179 34 8 762 1931 326384798 326383638 0.000000e+00 1814
11 TraesCS5A01G214800 chr5D 91.315 1278 80 19 1966 3226 326383339 326382076 0.000000e+00 1716
12 TraesCS5A01G214800 chr5D 92.361 1152 63 13 1957 3092 326403838 326404980 0.000000e+00 1616
13 TraesCS5A01G214800 chr5D 93.981 1080 36 14 893 1964 326402742 326403800 0.000000e+00 1607
14 TraesCS5A01G214800 chr4B 98.179 714 12 1 1 713 39219969 39219256 0.000000e+00 1245
15 TraesCS5A01G214800 chr6A 97.740 708 14 2 1 707 9472290 9472996 0.000000e+00 1218
16 TraesCS5A01G214800 chr2B 96.328 708 23 3 3 709 773460276 773459571 0.000000e+00 1160
17 TraesCS5A01G214800 chr2B 83.156 938 143 14 996 1930 641193379 641194304 0.000000e+00 843
18 TraesCS5A01G214800 chr7A 96.045 708 25 3 3 708 18674076 18674782 0.000000e+00 1149
19 TraesCS5A01G214800 chr7A 95.198 708 32 2 3 709 635546402 635545696 0.000000e+00 1118
20 TraesCS5A01G214800 chr1A 95.892 706 25 4 3 707 580441541 580440839 0.000000e+00 1140
21 TraesCS5A01G214800 chr1A 95.615 707 29 2 3 708 127348589 127347884 0.000000e+00 1133
22 TraesCS5A01G214800 chr3A 95.352 710 31 2 1 709 229155533 229156241 0.000000e+00 1127
23 TraesCS5A01G214800 chr2D 84.009 938 135 14 996 1930 538597493 538598418 0.000000e+00 887
24 TraesCS5A01G214800 chr2A 83.049 938 144 14 996 1930 680548123 680549048 0.000000e+00 837


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G214800 chr5A 430040593 430044601 4008 False 7404.0 7404 100.000000 1 4009 1 chr5A.!!$F2 4008
1 TraesCS5A01G214800 chr5A 128412361 128413066 705 False 1149.0 1149 96.045000 3 709 1 chr5A.!!$F1 706
2 TraesCS5A01G214800 chr5A 429995995 429998277 2282 True 1070.0 1759 91.244333 893 3095 3 chr5A.!!$R2 2202
3 TraesCS5A01G214800 chr5A 419829959 419830892 933 True 902.0 902 84.305000 999 1929 1 chr5A.!!$R1 930
4 TraesCS5A01G214800 chr5B 378850275 378853512 3237 True 3999.0 3999 89.142000 762 3996 1 chr5B.!!$R2 3234
5 TraesCS5A01G214800 chr5B 378903272 378905527 2255 False 1487.0 1886 91.119500 893 3092 2 chr5B.!!$F1 2199
6 TraesCS5A01G214800 chr5B 375224032 375224965 933 True 913.0 913 84.517000 999 1929 1 chr5B.!!$R1 930
7 TraesCS5A01G214800 chr5D 326382076 326384798 2722 True 1765.0 1814 93.070500 762 3226 2 chr5D.!!$R1 2464
8 TraesCS5A01G214800 chr5D 326402742 326404980 2238 False 1611.5 1616 93.171000 893 3092 2 chr5D.!!$F1 2199
9 TraesCS5A01G214800 chr4B 39219256 39219969 713 True 1245.0 1245 98.179000 1 713 1 chr4B.!!$R1 712
10 TraesCS5A01G214800 chr6A 9472290 9472996 706 False 1218.0 1218 97.740000 1 707 1 chr6A.!!$F1 706
11 TraesCS5A01G214800 chr2B 773459571 773460276 705 True 1160.0 1160 96.328000 3 709 1 chr2B.!!$R1 706
12 TraesCS5A01G214800 chr2B 641193379 641194304 925 False 843.0 843 83.156000 996 1930 1 chr2B.!!$F1 934
13 TraesCS5A01G214800 chr7A 18674076 18674782 706 False 1149.0 1149 96.045000 3 708 1 chr7A.!!$F1 705
14 TraesCS5A01G214800 chr7A 635545696 635546402 706 True 1118.0 1118 95.198000 3 709 1 chr7A.!!$R1 706
15 TraesCS5A01G214800 chr1A 580440839 580441541 702 True 1140.0 1140 95.892000 3 707 1 chr1A.!!$R2 704
16 TraesCS5A01G214800 chr1A 127347884 127348589 705 True 1133.0 1133 95.615000 3 708 1 chr1A.!!$R1 705
17 TraesCS5A01G214800 chr3A 229155533 229156241 708 False 1127.0 1127 95.352000 1 709 1 chr3A.!!$F1 708
18 TraesCS5A01G214800 chr2D 538597493 538598418 925 False 887.0 887 84.009000 996 1930 1 chr2D.!!$F1 934
19 TraesCS5A01G214800 chr2A 680548123 680549048 925 False 837.0 837 83.049000 996 1930 1 chr2A.!!$F1 934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
868 874 0.390472 CGCTCTTCCACTTCCACCTC 60.390 60.000 0.0 0.0 0.0 3.85 F
870 876 1.257743 CTCTTCCACTTCCACCTCGA 58.742 55.000 0.0 0.0 0.0 4.04 F
994 1000 1.804326 CGGCGTGGTACTTCTTCGG 60.804 63.158 0.0 0.0 0.0 4.30 F
2618 3063 1.002502 GCTTGTACCCCGCCTTTCT 60.003 57.895 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2510 2955 0.036765 CCTTTTCGGTGACCCATCGA 60.037 55.0 0.0 0.00 45.54 3.59 R
2549 2994 0.374758 CTTTGACGATGGCATCCACG 59.625 55.0 21.2 13.21 35.80 4.94 R
2720 3165 0.540923 GCTCTGGCATGAACTCCTCT 59.459 55.0 0.0 0.00 38.54 3.69 R
3617 4077 0.249073 ACGTCATGTAGGCTCGATGC 60.249 55.0 0.0 0.00 41.94 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
660 662 3.974912 TGTATCCGTGTACGTTTTGTGA 58.025 40.909 0.00 0.00 37.74 3.58
713 716 9.924650 CTTTTTATAAGTAGTATAGATGCCGGT 57.075 33.333 1.90 0.00 0.00 5.28
717 720 9.964354 TTATAAGTAGTATAGATGCCGGTTAGA 57.036 33.333 1.90 0.00 0.00 2.10
718 721 6.821031 AAGTAGTATAGATGCCGGTTAGAG 57.179 41.667 1.90 0.00 0.00 2.43
719 722 6.124316 AGTAGTATAGATGCCGGTTAGAGA 57.876 41.667 1.90 0.00 0.00 3.10
720 723 6.174760 AGTAGTATAGATGCCGGTTAGAGAG 58.825 44.000 1.90 0.00 0.00 3.20
721 724 4.337145 AGTATAGATGCCGGTTAGAGAGG 58.663 47.826 1.90 0.00 0.00 3.69
722 725 3.527507 ATAGATGCCGGTTAGAGAGGA 57.472 47.619 1.90 0.00 0.00 3.71
723 726 2.160721 AGATGCCGGTTAGAGAGGAA 57.839 50.000 1.90 0.00 0.00 3.36
724 727 2.467880 AGATGCCGGTTAGAGAGGAAA 58.532 47.619 1.90 0.00 0.00 3.13
725 728 2.838202 AGATGCCGGTTAGAGAGGAAAA 59.162 45.455 1.90 0.00 0.00 2.29
726 729 2.467566 TGCCGGTTAGAGAGGAAAAC 57.532 50.000 1.90 0.00 0.00 2.43
727 730 1.002773 TGCCGGTTAGAGAGGAAAACC 59.997 52.381 1.90 0.00 39.44 3.27
728 731 1.002773 GCCGGTTAGAGAGGAAAACCA 59.997 52.381 1.90 0.00 42.31 3.67
729 732 2.935676 GCCGGTTAGAGAGGAAAACCAG 60.936 54.545 1.90 0.00 42.31 4.00
730 733 2.565834 CCGGTTAGAGAGGAAAACCAGA 59.434 50.000 0.00 0.00 42.31 3.86
731 734 3.197983 CCGGTTAGAGAGGAAAACCAGAT 59.802 47.826 0.00 0.00 42.31 2.90
732 735 4.323562 CCGGTTAGAGAGGAAAACCAGATT 60.324 45.833 0.00 0.00 42.31 2.40
733 736 5.246307 CGGTTAGAGAGGAAAACCAGATTT 58.754 41.667 4.52 0.00 42.31 2.17
734 737 5.705905 CGGTTAGAGAGGAAAACCAGATTTT 59.294 40.000 4.52 0.00 42.31 1.82
735 738 6.206829 CGGTTAGAGAGGAAAACCAGATTTTT 59.793 38.462 4.52 0.00 42.31 1.94
756 759 3.402628 TTTTTCTCGGCTAGAGTTGCT 57.597 42.857 0.00 0.00 46.86 3.91
757 760 2.656560 TTTCTCGGCTAGAGTTGCTC 57.343 50.000 0.00 0.00 46.86 4.26
758 761 1.840737 TTCTCGGCTAGAGTTGCTCT 58.159 50.000 4.02 4.02 46.86 4.09
759 762 2.711978 TCTCGGCTAGAGTTGCTCTA 57.288 50.000 0.00 5.84 46.86 2.43
760 763 3.000684 TCTCGGCTAGAGTTGCTCTAA 57.999 47.619 7.22 0.00 46.86 2.10
768 771 3.290308 AGAGTTGCTCTAACACACGAG 57.710 47.619 0.00 0.00 39.28 4.18
771 774 4.700692 AGAGTTGCTCTAACACACGAGATA 59.299 41.667 0.00 0.00 39.28 1.98
782 785 3.501062 ACACACGAGATAGTCTTCGTCAA 59.499 43.478 0.00 0.00 36.64 3.18
783 786 4.023450 ACACACGAGATAGTCTTCGTCAAA 60.023 41.667 0.00 0.00 36.64 2.69
784 787 5.096169 CACACGAGATAGTCTTCGTCAAAT 58.904 41.667 0.00 0.00 36.64 2.32
814 817 5.316987 TCCAAAGTCTTCTTCAGATTTCCC 58.683 41.667 0.00 0.00 30.30 3.97
828 831 3.835790 TTCCCGGTGCTTTCCCACG 62.836 63.158 0.00 0.00 36.59 4.94
836 839 0.817634 TGCTTTCCCACGTCCACTTG 60.818 55.000 0.00 0.00 0.00 3.16
841 847 2.978010 CCACGTCCACTTGGCACC 60.978 66.667 0.00 0.00 34.44 5.01
843 849 1.600636 CACGTCCACTTGGCACCAT 60.601 57.895 0.00 0.00 34.44 3.55
859 865 3.121030 ATGCACGCGCTCTTCCAC 61.121 61.111 5.73 0.00 39.64 4.02
867 873 1.674057 CGCTCTTCCACTTCCACCT 59.326 57.895 0.00 0.00 0.00 4.00
868 874 0.390472 CGCTCTTCCACTTCCACCTC 60.390 60.000 0.00 0.00 0.00 3.85
869 875 0.390472 GCTCTTCCACTTCCACCTCG 60.390 60.000 0.00 0.00 0.00 4.63
870 876 1.257743 CTCTTCCACTTCCACCTCGA 58.742 55.000 0.00 0.00 0.00 4.04
889 895 4.840271 TCGATCGCCATCTATAAGTAGGA 58.160 43.478 11.09 0.00 0.00 2.94
890 896 4.876679 TCGATCGCCATCTATAAGTAGGAG 59.123 45.833 11.09 0.00 0.00 3.69
891 897 4.636648 CGATCGCCATCTATAAGTAGGAGT 59.363 45.833 0.26 0.00 0.00 3.85
947 953 2.303890 TGAAGACATCACTCAGCCACAT 59.696 45.455 0.00 0.00 31.50 3.21
988 994 4.388499 CTGCCCGGCGTGGTACTT 62.388 66.667 6.01 0.00 35.15 2.24
989 995 4.382320 TGCCCGGCGTGGTACTTC 62.382 66.667 6.01 0.00 35.15 3.01
994 1000 1.804326 CGGCGTGGTACTTCTTCGG 60.804 63.158 0.00 0.00 0.00 4.30
1952 2007 3.941483 GCTACTGCTATTGCTTTCCTTCA 59.059 43.478 0.00 0.00 40.48 3.02
1974 2333 4.053295 ACTGCAACAATTCATGTGCTTTC 58.947 39.130 5.47 0.00 42.99 2.62
1982 2341 6.000219 ACAATTCATGTGCTTTCAGACTAGT 59.000 36.000 0.00 0.00 41.93 2.57
1983 2342 7.161404 ACAATTCATGTGCTTTCAGACTAGTA 58.839 34.615 0.00 0.00 41.93 1.82
1984 2343 7.332926 ACAATTCATGTGCTTTCAGACTAGTAG 59.667 37.037 0.00 0.00 41.93 2.57
1985 2344 6.590234 TTCATGTGCTTTCAGACTAGTAGA 57.410 37.500 3.59 0.00 0.00 2.59
2074 2437 4.392940 AGACAGCAAGCATATTATGTCCC 58.607 43.478 5.60 0.00 38.20 4.46
2233 2621 4.313020 ACTTTTCAGATCAGAGGGCAAT 57.687 40.909 0.00 0.00 0.00 3.56
2237 2625 2.763039 TCAGATCAGAGGGCAATACCA 58.237 47.619 0.00 0.00 42.05 3.25
2238 2626 3.114606 TCAGATCAGAGGGCAATACCAA 58.885 45.455 0.00 0.00 42.05 3.67
2239 2627 3.718434 TCAGATCAGAGGGCAATACCAAT 59.282 43.478 0.00 0.00 42.05 3.16
2240 2628 4.166725 TCAGATCAGAGGGCAATACCAATT 59.833 41.667 0.00 0.00 42.05 2.32
2243 2631 5.608437 AGATCAGAGGGCAATACCAATTAGA 59.392 40.000 0.00 0.00 42.05 2.10
2244 2632 5.036117 TCAGAGGGCAATACCAATTAGAC 57.964 43.478 0.00 0.00 42.05 2.59
2245 2633 4.721776 TCAGAGGGCAATACCAATTAGACT 59.278 41.667 0.00 0.00 42.05 3.24
2246 2634 5.059833 CAGAGGGCAATACCAATTAGACTC 58.940 45.833 0.00 0.00 42.05 3.36
2327 2772 6.654582 TGTACAGCATCACTCATTTACACATT 59.345 34.615 0.00 0.00 0.00 2.71
2353 2798 7.651808 ACCAATAATTCTGACTTTTCACACTG 58.348 34.615 0.00 0.00 0.00 3.66
2372 2817 6.702723 CACACTGATCAACACCATTTTGAAAT 59.297 34.615 0.00 0.00 36.57 2.17
2378 2823 5.426504 TCAACACCATTTTGAAATGTGCTT 58.573 33.333 13.64 7.67 43.24 3.91
2423 2868 3.444805 GAGAGCTCCGCGGTGACT 61.445 66.667 30.07 24.81 0.00 3.41
2549 2994 1.227674 CATGCCGAGCCTTCCCTAC 60.228 63.158 0.00 0.00 0.00 3.18
2618 3063 1.002502 GCTTGTACCCCGCCTTTCT 60.003 57.895 0.00 0.00 0.00 2.52
2720 3165 2.281484 GAGTTGTGGGAAGCGCCA 60.281 61.111 2.29 0.00 38.95 5.69
2773 3218 2.892425 GCTCGATGTCAAGGGGCG 60.892 66.667 0.00 0.00 0.00 6.13
2852 3297 1.614317 GGGTTGAAGGTGATCCAGGTG 60.614 57.143 0.00 0.00 35.89 4.00
3198 3649 7.559170 AGTGAAATAATGGGATTTCCTCTCTTG 59.441 37.037 6.45 0.00 42.68 3.02
3217 3668 9.224267 CTCTCTTGGAAGATGTCTTTATCAAAA 57.776 33.333 0.00 0.00 36.11 2.44
3231 3682 8.612619 GTCTTTATCAAAATCTCGCCTCATTTA 58.387 33.333 0.00 0.00 0.00 1.40
3237 3688 7.305474 TCAAAATCTCGCCTCATTTAAAGTTC 58.695 34.615 0.00 0.00 0.00 3.01
3239 3690 6.670077 AATCTCGCCTCATTTAAAGTTCTC 57.330 37.500 0.00 0.00 0.00 2.87
3277 3728 3.498018 TGTTGATCATTTCAGGTGTGTCG 59.502 43.478 0.00 0.00 35.27 4.35
3286 3737 1.154454 AGGTGTGTCGACCTGGGTA 59.846 57.895 14.12 0.00 45.20 3.69
3288 3739 1.183676 GGTGTGTCGACCTGGGTAGT 61.184 60.000 14.12 0.00 32.69 2.73
3290 3741 0.677288 TGTGTCGACCTGGGTAGTTG 59.323 55.000 14.12 0.00 0.00 3.16
3292 3743 0.677288 TGTCGACCTGGGTAGTTGTG 59.323 55.000 14.12 0.00 0.00 3.33
3296 3747 1.876416 CGACCTGGGTAGTTGTGGTTG 60.876 57.143 0.00 0.00 0.00 3.77
3297 3748 0.476771 ACCTGGGTAGTTGTGGTTGG 59.523 55.000 0.00 0.00 0.00 3.77
3298 3749 0.893727 CCTGGGTAGTTGTGGTTGGC 60.894 60.000 0.00 0.00 0.00 4.52
3299 3750 0.179004 CTGGGTAGTTGTGGTTGGCA 60.179 55.000 0.00 0.00 0.00 4.92
3300 3751 0.480690 TGGGTAGTTGTGGTTGGCAT 59.519 50.000 0.00 0.00 0.00 4.40
3301 3752 0.887933 GGGTAGTTGTGGTTGGCATG 59.112 55.000 0.00 0.00 0.00 4.06
3302 3753 1.546773 GGGTAGTTGTGGTTGGCATGA 60.547 52.381 0.00 0.00 0.00 3.07
3303 3754 1.812571 GGTAGTTGTGGTTGGCATGAG 59.187 52.381 0.00 0.00 0.00 2.90
3304 3755 2.504367 GTAGTTGTGGTTGGCATGAGT 58.496 47.619 0.00 0.00 0.00 3.41
3305 3756 2.071778 AGTTGTGGTTGGCATGAGTT 57.928 45.000 0.00 0.00 0.00 3.01
3306 3757 3.222173 AGTTGTGGTTGGCATGAGTTA 57.778 42.857 0.00 0.00 0.00 2.24
3311 3762 2.488153 GTGGTTGGCATGAGTTAGGTTC 59.512 50.000 0.00 0.00 0.00 3.62
3335 3786 1.087501 GAGAATTGTCCCACCTTCGC 58.912 55.000 0.00 0.00 0.00 4.70
3339 3790 1.568504 ATTGTCCCACCTTCGCTCTA 58.431 50.000 0.00 0.00 0.00 2.43
3340 3791 0.606604 TTGTCCCACCTTCGCTCTAC 59.393 55.000 0.00 0.00 0.00 2.59
3353 3804 6.071278 ACCTTCGCTCTACAAATCTTAGTCTT 60.071 38.462 0.00 0.00 0.00 3.01
3378 3829 3.118371 AGTCCGTCCTTTGAGTCAGTTTT 60.118 43.478 0.00 0.00 0.00 2.43
3403 3854 5.351465 TGACAGAAGAAATTTCAGCCGATAC 59.649 40.000 19.99 5.43 0.00 2.24
3440 3891 4.054780 TGCTAGTTCTATAAGGCAACCG 57.945 45.455 0.00 0.00 37.17 4.44
3446 3897 4.222145 AGTTCTATAAGGCAACCGACTTGA 59.778 41.667 0.00 0.00 42.01 3.02
3471 3922 4.457834 AATCTCTTGTCCGAGAAATCGT 57.542 40.909 0.00 0.00 42.80 3.73
3475 3926 2.817844 TCTTGTCCGAGAAATCGTCTGA 59.182 45.455 0.00 0.00 36.41 3.27
3481 3932 4.448060 GTCCGAGAAATCGTCTGAAAAACT 59.552 41.667 0.00 0.00 36.41 2.66
3506 3958 9.929180 CTATTATATTCAAGATGGTTTCCTCGA 57.071 33.333 0.00 0.00 0.00 4.04
3522 3974 6.908870 TTCCTCGAAGAAATCACATACATG 57.091 37.500 0.00 0.00 34.09 3.21
3559 4019 5.892160 ATGACATTCTCAACAATCCACTG 57.108 39.130 0.00 0.00 30.60 3.66
3573 4033 9.912634 CAACAATCCACTGTAAGAAAACATAAT 57.087 29.630 0.00 0.00 37.43 1.28
3603 4063 3.671702 CGTTCGAACACTAGACTTACCCC 60.672 52.174 26.71 0.00 0.00 4.95
3609 4069 2.653366 ACACTAGACTTACCCCCTCTCA 59.347 50.000 0.00 0.00 0.00 3.27
3611 4071 2.299521 CTAGACTTACCCCCTCTCACG 58.700 57.143 0.00 0.00 0.00 4.35
3620 4080 4.457496 CCTCTCACGTGGCGGCAT 62.457 66.667 17.19 0.00 0.00 4.40
3622 4082 4.794439 TCTCACGTGGCGGCATCG 62.794 66.667 24.37 24.37 39.81 3.84
3655 4115 2.737252 CGTCATCGTCGATCCTCTATGA 59.263 50.000 4.34 0.00 0.00 2.15
3659 4119 2.768698 TCGTCGATCCTCTATGACTCC 58.231 52.381 0.00 0.00 0.00 3.85
3660 4120 1.807742 CGTCGATCCTCTATGACTCCC 59.192 57.143 0.00 0.00 0.00 4.30
3661 4121 2.810767 CGTCGATCCTCTATGACTCCCA 60.811 54.545 0.00 0.00 0.00 4.37
3662 4122 3.426615 GTCGATCCTCTATGACTCCCAT 58.573 50.000 0.00 0.00 39.25 4.00
3663 4123 3.442273 GTCGATCCTCTATGACTCCCATC 59.558 52.174 0.00 0.00 36.71 3.51
3664 4124 3.074538 TCGATCCTCTATGACTCCCATCA 59.925 47.826 0.00 0.00 36.71 3.07
3666 4126 2.964209 TCCTCTATGACTCCCATCACC 58.036 52.381 0.00 0.00 36.71 4.02
3667 4127 2.247372 TCCTCTATGACTCCCATCACCA 59.753 50.000 0.00 0.00 36.71 4.17
3669 4129 2.366916 CTCTATGACTCCCATCACCACC 59.633 54.545 0.00 0.00 36.71 4.61
3670 4130 2.118679 CTATGACTCCCATCACCACCA 58.881 52.381 0.00 0.00 36.71 4.17
3671 4131 1.600058 ATGACTCCCATCACCACCAT 58.400 50.000 0.00 0.00 0.00 3.55
3726 4186 8.725148 ACATATTCATGAACTCTTTCTGTTGTC 58.275 33.333 11.07 0.00 35.96 3.18
3727 4187 8.944029 CATATTCATGAACTCTTTCTGTTGTCT 58.056 33.333 11.07 0.00 33.67 3.41
3781 4241 4.866682 GTGAAGAGCACTTAGTATTGGC 57.133 45.455 0.00 0.00 44.27 4.52
3784 4244 1.139058 AGAGCACTTAGTATTGGCGGG 59.861 52.381 0.00 0.00 0.00 6.13
3826 4286 2.202743 CCTTCGGCGATGAAGCGA 60.203 61.111 22.53 0.00 43.21 4.93
3850 4310 3.623703 TGTAGCCTCCGTGTAGTGAATA 58.376 45.455 0.00 0.00 0.00 1.75
3856 4316 3.637229 CCTCCGTGTAGTGAATACCATCT 59.363 47.826 0.00 0.00 33.01 2.90
3862 4322 6.183360 CCGTGTAGTGAATACCATCTCAGTTA 60.183 42.308 0.00 0.00 33.01 2.24
3883 4343 0.460284 CGAACACCGAGGGATCCTTG 60.460 60.000 12.58 4.20 41.76 3.61
3943 4403 4.690719 CAGTTGTACGCCCCGCCA 62.691 66.667 0.00 0.00 0.00 5.69
3970 4430 2.571757 CAAGCCCGTAGAGCGTCA 59.428 61.111 0.00 0.00 35.24 4.35
3971 4431 1.517257 CAAGCCCGTAGAGCGTCAG 60.517 63.158 0.00 0.00 35.24 3.51
3972 4432 1.977544 AAGCCCGTAGAGCGTCAGT 60.978 57.895 0.00 0.00 35.24 3.41
3976 4436 2.566529 CGTAGAGCGTCAGTGCCA 59.433 61.111 0.00 0.00 35.54 4.92
3979 4439 1.979155 TAGAGCGTCAGTGCCAGCT 60.979 57.895 6.54 6.54 43.33 4.24
3993 4453 1.950828 CCAGCTACTCCTGCAGATTG 58.049 55.000 17.39 7.16 0.00 2.67
3996 4456 3.391965 CAGCTACTCCTGCAGATTGATC 58.608 50.000 17.39 0.00 0.00 2.92
3997 4457 3.036819 AGCTACTCCTGCAGATTGATCA 58.963 45.455 17.39 0.00 0.00 2.92
3998 4458 3.453717 AGCTACTCCTGCAGATTGATCAA 59.546 43.478 17.39 11.26 0.00 2.57
3999 4459 4.102838 AGCTACTCCTGCAGATTGATCAAT 59.897 41.667 20.85 20.85 0.00 2.57
4000 4460 4.820716 GCTACTCCTGCAGATTGATCAATT 59.179 41.667 21.57 9.39 0.00 2.32
4001 4461 5.298777 GCTACTCCTGCAGATTGATCAATTT 59.701 40.000 21.57 13.77 0.00 1.82
4002 4462 6.183360 GCTACTCCTGCAGATTGATCAATTTT 60.183 38.462 21.57 10.87 0.00 1.82
4003 4463 6.600882 ACTCCTGCAGATTGATCAATTTTT 57.399 33.333 21.57 8.52 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
709 712 2.565834 TCTGGTTTTCCTCTCTAACCGG 59.434 50.000 0.00 0.00 45.53 5.28
736 739 3.006967 AGAGCAACTCTAGCCGAGAAAAA 59.993 43.478 7.55 0.00 42.62 1.94
737 740 2.563179 AGAGCAACTCTAGCCGAGAAAA 59.437 45.455 7.55 0.00 42.62 2.29
738 741 2.171840 AGAGCAACTCTAGCCGAGAAA 58.828 47.619 7.55 0.00 42.62 2.52
739 742 1.840737 AGAGCAACTCTAGCCGAGAA 58.159 50.000 7.55 0.00 42.62 2.87
740 743 2.683867 GTTAGAGCAACTCTAGCCGAGA 59.316 50.000 7.55 0.00 42.92 4.04
741 744 2.423892 TGTTAGAGCAACTCTAGCCGAG 59.576 50.000 13.69 0.00 42.92 4.63
742 745 2.163815 GTGTTAGAGCAACTCTAGCCGA 59.836 50.000 13.69 0.00 42.92 5.54
743 746 2.094700 TGTGTTAGAGCAACTCTAGCCG 60.095 50.000 13.69 0.00 42.92 5.52
744 747 3.254892 GTGTGTTAGAGCAACTCTAGCC 58.745 50.000 13.69 7.59 42.92 3.93
745 748 2.917971 CGTGTGTTAGAGCAACTCTAGC 59.082 50.000 10.50 10.50 42.92 3.42
746 749 4.154375 TCTCGTGTGTTAGAGCAACTCTAG 59.846 45.833 4.64 0.00 42.92 2.43
747 750 4.070009 TCTCGTGTGTTAGAGCAACTCTA 58.930 43.478 0.16 0.16 41.50 2.43
748 751 2.885266 TCTCGTGTGTTAGAGCAACTCT 59.115 45.455 2.23 2.23 43.83 3.24
749 752 3.284323 TCTCGTGTGTTAGAGCAACTC 57.716 47.619 0.00 0.00 38.05 3.01
750 753 3.944055 ATCTCGTGTGTTAGAGCAACT 57.056 42.857 0.00 0.00 38.05 3.16
751 754 4.734917 ACTATCTCGTGTGTTAGAGCAAC 58.265 43.478 0.00 0.00 37.67 4.17
752 755 4.700692 AGACTATCTCGTGTGTTAGAGCAA 59.299 41.667 0.00 0.00 34.66 3.91
753 756 4.262617 AGACTATCTCGTGTGTTAGAGCA 58.737 43.478 0.00 0.00 34.66 4.26
754 757 4.886247 AGACTATCTCGTGTGTTAGAGC 57.114 45.455 0.00 0.00 34.66 4.09
755 758 5.063691 ACGAAGACTATCTCGTGTGTTAGAG 59.936 44.000 0.00 0.00 37.44 2.43
756 759 4.934001 ACGAAGACTATCTCGTGTGTTAGA 59.066 41.667 0.00 0.00 37.44 2.10
757 760 5.163884 TGACGAAGACTATCTCGTGTGTTAG 60.164 44.000 5.44 0.00 39.02 2.34
758 761 4.692155 TGACGAAGACTATCTCGTGTGTTA 59.308 41.667 5.44 0.00 39.02 2.41
759 762 3.501062 TGACGAAGACTATCTCGTGTGTT 59.499 43.478 5.44 0.00 39.02 3.32
760 763 3.072211 TGACGAAGACTATCTCGTGTGT 58.928 45.455 5.44 0.00 39.02 3.72
768 771 8.932791 TGGAAAACTTATTTGACGAAGACTATC 58.067 33.333 0.00 0.00 0.00 2.08
771 774 7.562454 TTGGAAAACTTATTTGACGAAGACT 57.438 32.000 0.00 0.00 0.00 3.24
782 785 9.408648 TCTGAAGAAGACTTTGGAAAACTTATT 57.591 29.630 0.00 0.00 36.39 1.40
783 786 8.980481 TCTGAAGAAGACTTTGGAAAACTTAT 57.020 30.769 0.00 0.00 36.39 1.73
784 787 8.980481 ATCTGAAGAAGACTTTGGAAAACTTA 57.020 30.769 0.00 0.00 37.88 2.24
814 817 3.047877 GGACGTGGGAAAGCACCG 61.048 66.667 0.00 0.00 0.00 4.94
828 831 1.902918 TGCATGGTGCCAAGTGGAC 60.903 57.895 0.18 0.00 44.23 4.02
841 847 3.120385 TGGAAGAGCGCGTGCATG 61.120 61.111 24.79 0.09 46.23 4.06
843 849 3.807631 AAGTGGAAGAGCGCGTGCA 62.808 57.895 24.79 0.00 46.23 4.57
859 865 0.598680 GATGGCGATCGAGGTGGAAG 60.599 60.000 21.57 0.00 0.00 3.46
867 873 4.840271 TCCTACTTATAGATGGCGATCGA 58.160 43.478 21.57 0.00 33.34 3.59
868 874 4.636648 ACTCCTACTTATAGATGGCGATCG 59.363 45.833 11.69 11.69 33.34 3.69
869 875 6.238538 GCTACTCCTACTTATAGATGGCGATC 60.239 46.154 0.00 0.00 0.00 3.69
870 876 5.591067 GCTACTCCTACTTATAGATGGCGAT 59.409 44.000 0.00 0.00 0.00 4.58
889 895 1.878656 GAGCTCGTGGTGGTGCTACT 61.879 60.000 0.00 0.00 35.76 2.57
890 896 1.446272 GAGCTCGTGGTGGTGCTAC 60.446 63.158 0.00 0.00 35.76 3.58
891 897 1.468506 TTGAGCTCGTGGTGGTGCTA 61.469 55.000 9.64 0.00 35.76 3.49
947 953 1.937899 CGCTGATGATGATGCAAGTGA 59.062 47.619 0.00 0.00 0.00 3.41
981 987 1.719529 TTGGGACCGAAGAAGTACCA 58.280 50.000 0.00 0.00 46.90 3.25
984 990 2.500098 CTCCATTGGGACCGAAGAAGTA 59.500 50.000 2.09 0.00 38.64 2.24
985 991 1.279271 CTCCATTGGGACCGAAGAAGT 59.721 52.381 2.09 0.00 38.64 3.01
987 993 0.035439 GCTCCATTGGGACCGAAGAA 60.035 55.000 2.09 0.00 38.64 2.52
988 994 0.909610 AGCTCCATTGGGACCGAAGA 60.910 55.000 2.09 0.00 38.64 2.87
989 995 0.035056 AAGCTCCATTGGGACCGAAG 60.035 55.000 2.09 0.00 38.64 3.79
994 1000 0.620556 TGAGGAAGCTCCATTGGGAC 59.379 55.000 2.09 0.00 39.61 4.46
1952 2007 3.738830 AAGCACATGAATTGTTGCAGT 57.261 38.095 0.00 0.00 36.00 4.40
1974 2333 7.968956 ACATTTGTGTACGAATCTACTAGTCTG 59.031 37.037 0.00 0.00 0.00 3.51
1982 2341 7.380536 ACCAACTACATTTGTGTACGAATCTA 58.619 34.615 0.00 0.00 0.00 1.98
1983 2342 6.228258 ACCAACTACATTTGTGTACGAATCT 58.772 36.000 0.00 0.00 0.00 2.40
1984 2343 6.476243 ACCAACTACATTTGTGTACGAATC 57.524 37.500 0.00 0.00 0.00 2.52
1985 2344 6.664515 CAACCAACTACATTTGTGTACGAAT 58.335 36.000 0.00 0.00 0.00 3.34
2074 2437 1.121240 CGCTTAGACCGATAGCAACG 58.879 55.000 0.00 0.00 34.62 4.10
2220 2608 5.703130 GTCTAATTGGTATTGCCCTCTGATC 59.297 44.000 0.00 0.00 36.04 2.92
2226 2614 4.721776 TCAGAGTCTAATTGGTATTGCCCT 59.278 41.667 0.00 0.00 36.04 5.19
2233 2621 6.048732 TGCAATGTCAGAGTCTAATTGGTA 57.951 37.500 17.52 3.47 0.00 3.25
2237 2625 7.692460 TGAATTGCAATGTCAGAGTCTAATT 57.308 32.000 13.82 0.00 0.00 1.40
2238 2626 7.876936 ATGAATTGCAATGTCAGAGTCTAAT 57.123 32.000 13.82 0.00 0.00 1.73
2239 2627 7.692460 AATGAATTGCAATGTCAGAGTCTAA 57.308 32.000 13.82 0.00 0.00 2.10
2240 2628 7.692460 AAATGAATTGCAATGTCAGAGTCTA 57.308 32.000 13.82 0.00 0.00 2.59
2243 2631 7.692460 TCTAAATGAATTGCAATGTCAGAGT 57.308 32.000 13.82 9.99 0.00 3.24
2244 2632 9.020813 CAATCTAAATGAATTGCAATGTCAGAG 57.979 33.333 13.82 14.98 0.00 3.35
2245 2633 8.525316 ACAATCTAAATGAATTGCAATGTCAGA 58.475 29.630 13.82 10.18 0.00 3.27
2246 2634 8.592155 CACAATCTAAATGAATTGCAATGTCAG 58.408 33.333 13.82 5.21 0.00 3.51
2327 2772 8.783093 CAGTGTGAAAAGTCAGAATTATTGGTA 58.217 33.333 0.00 0.00 33.27 3.25
2372 2817 1.419381 TGAGGTCCTACACAAGCACA 58.581 50.000 0.00 0.00 0.00 4.57
2378 2823 1.278985 CCAGCAATGAGGTCCTACACA 59.721 52.381 0.00 0.00 0.00 3.72
2423 2868 1.541118 TGAGAGGGCCCATTCCACA 60.541 57.895 27.56 13.80 0.00 4.17
2510 2955 0.036765 CCTTTTCGGTGACCCATCGA 60.037 55.000 0.00 0.00 45.54 3.59
2549 2994 0.374758 CTTTGACGATGGCATCCACG 59.625 55.000 21.20 13.21 35.80 4.94
2720 3165 0.540923 GCTCTGGCATGAACTCCTCT 59.459 55.000 0.00 0.00 38.54 3.69
2773 3218 2.645838 TGGAAGCAGCTCATAATCCC 57.354 50.000 7.50 0.00 0.00 3.85
2852 3297 1.439644 CAGGAGGTTCGCTAGGCTC 59.560 63.158 0.00 0.00 0.00 4.70
3005 3450 8.687292 AGAGCACACATGTATCAAATATTCAT 57.313 30.769 0.00 0.00 0.00 2.57
3192 3643 9.745018 ATTTTGATAAAGACATCTTCCAAGAGA 57.255 29.630 0.00 0.00 38.66 3.10
3198 3649 7.128976 GCGAGATTTTGATAAAGACATCTTCC 58.871 38.462 0.00 0.00 34.61 3.46
3217 3668 5.983540 AGAGAACTTTAAATGAGGCGAGAT 58.016 37.500 0.00 0.00 0.00 2.75
3231 3682 5.810095 ACCTAGCAGCATTAAGAGAACTTT 58.190 37.500 0.00 0.00 37.53 2.66
3237 3688 4.937620 TCAACAACCTAGCAGCATTAAGAG 59.062 41.667 0.00 0.00 0.00 2.85
3239 3690 5.355071 TGATCAACAACCTAGCAGCATTAAG 59.645 40.000 0.00 0.00 0.00 1.85
3277 3728 1.544759 CCAACCACAACTACCCAGGTC 60.545 57.143 0.00 0.00 0.00 3.85
3286 3737 2.071778 AACTCATGCCAACCACAACT 57.928 45.000 0.00 0.00 0.00 3.16
3288 3739 2.158534 ACCTAACTCATGCCAACCACAA 60.159 45.455 0.00 0.00 0.00 3.33
3290 3741 2.200373 ACCTAACTCATGCCAACCAC 57.800 50.000 0.00 0.00 0.00 4.16
3292 3743 2.790433 TGAACCTAACTCATGCCAACC 58.210 47.619 0.00 0.00 0.00 3.77
3296 3747 4.943705 TCTCATTTGAACCTAACTCATGCC 59.056 41.667 0.00 0.00 0.00 4.40
3297 3748 6.500684 TTCTCATTTGAACCTAACTCATGC 57.499 37.500 0.00 0.00 0.00 4.06
3298 3749 8.517878 ACAATTCTCATTTGAACCTAACTCATG 58.482 33.333 0.00 0.00 0.00 3.07
3299 3750 8.641498 ACAATTCTCATTTGAACCTAACTCAT 57.359 30.769 0.00 0.00 0.00 2.90
3300 3751 7.174946 GGACAATTCTCATTTGAACCTAACTCA 59.825 37.037 0.00 0.00 0.00 3.41
3301 3752 7.362142 GGGACAATTCTCATTTGAACCTAACTC 60.362 40.741 0.00 0.00 0.00 3.01
3302 3753 6.434340 GGGACAATTCTCATTTGAACCTAACT 59.566 38.462 0.00 0.00 0.00 2.24
3303 3754 6.208599 TGGGACAATTCTCATTTGAACCTAAC 59.791 38.462 0.00 0.00 31.92 2.34
3304 3755 6.208599 GTGGGACAATTCTCATTTGAACCTAA 59.791 38.462 0.00 0.00 44.16 2.69
3305 3756 5.710099 GTGGGACAATTCTCATTTGAACCTA 59.290 40.000 0.00 0.00 44.16 3.08
3306 3757 4.524328 GTGGGACAATTCTCATTTGAACCT 59.476 41.667 0.00 0.00 44.16 3.50
3311 3762 4.379813 CGAAGGTGGGACAATTCTCATTTG 60.380 45.833 0.00 0.00 44.16 2.32
3335 3786 7.262048 GGACTCCAAGACTAAGATTTGTAGAG 58.738 42.308 0.00 0.00 0.00 2.43
3339 3790 4.283722 ACGGACTCCAAGACTAAGATTTGT 59.716 41.667 0.00 0.00 0.00 2.83
3340 3791 4.822026 ACGGACTCCAAGACTAAGATTTG 58.178 43.478 0.00 0.00 0.00 2.32
3353 3804 0.966920 GACTCAAAGGACGGACTCCA 59.033 55.000 0.00 0.00 42.46 3.86
3378 3829 4.133820 TCGGCTGAAATTTCTTCTGTCAA 58.866 39.130 18.64 0.00 0.00 3.18
3382 3833 7.539712 TTAGTATCGGCTGAAATTTCTTCTG 57.460 36.000 18.64 14.12 0.00 3.02
3386 3837 9.003658 CCATAATTAGTATCGGCTGAAATTTCT 57.996 33.333 18.64 0.46 0.00 2.52
3421 3872 5.517322 AGTCGGTTGCCTTATAGAACTAG 57.483 43.478 0.00 0.00 0.00 2.57
3422 3873 5.419788 TCAAGTCGGTTGCCTTATAGAACTA 59.580 40.000 0.00 0.00 35.94 2.24
3432 3883 1.757682 TTTGTTCAAGTCGGTTGCCT 58.242 45.000 0.00 0.00 35.94 4.75
3440 3891 4.750098 TCGGACAAGAGATTTGTTCAAGTC 59.250 41.667 0.00 0.80 31.96 3.01
3446 3897 5.120830 CGATTTCTCGGACAAGAGATTTGTT 59.879 40.000 0.00 0.00 45.55 2.83
3498 3950 6.878923 ACATGTATGTGATTTCTTCGAGGAAA 59.121 34.615 22.86 22.86 40.03 3.13
3522 3974 8.946085 TGAGAATGTCATTAATTGGAGTAACAC 58.054 33.333 0.00 0.00 0.00 3.32
3530 3982 8.252417 TGGATTGTTGAGAATGTCATTAATTGG 58.748 33.333 0.00 0.00 34.17 3.16
3531 3983 9.079833 GTGGATTGTTGAGAATGTCATTAATTG 57.920 33.333 0.00 0.00 34.17 2.32
3532 3984 9.028284 AGTGGATTGTTGAGAATGTCATTAATT 57.972 29.630 0.00 0.00 34.17 1.40
3533 3985 8.464404 CAGTGGATTGTTGAGAATGTCATTAAT 58.536 33.333 0.00 0.00 34.17 1.40
3535 3987 6.942005 ACAGTGGATTGTTGAGAATGTCATTA 59.058 34.615 0.00 0.00 34.17 1.90
3536 3988 5.771666 ACAGTGGATTGTTGAGAATGTCATT 59.228 36.000 0.00 0.00 34.17 2.57
3537 3989 5.319453 ACAGTGGATTGTTGAGAATGTCAT 58.681 37.500 0.00 0.00 34.17 3.06
3573 4033 5.008019 AGTCTAGTGTTCGAACGACAAGTAA 59.992 40.000 25.67 6.69 0.00 2.24
3581 4041 3.496155 GGGTAAGTCTAGTGTTCGAACG 58.504 50.000 22.48 9.02 0.00 3.95
3603 4063 4.457496 ATGCCGCCACGTGAGAGG 62.457 66.667 19.30 18.48 45.38 3.69
3617 4077 0.249073 ACGTCATGTAGGCTCGATGC 60.249 55.000 0.00 0.00 41.94 3.91
3620 4080 1.333931 GATGACGTCATGTAGGCTCGA 59.666 52.381 34.48 0.42 36.57 4.04
3622 4082 1.759994 CGATGACGTCATGTAGGCTC 58.240 55.000 34.48 18.15 36.57 4.70
3655 4115 1.600058 ATGATGGTGGTGATGGGAGT 58.400 50.000 0.00 0.00 0.00 3.85
3659 4119 5.142639 AGGAATTAATGATGGTGGTGATGG 58.857 41.667 0.00 0.00 0.00 3.51
3660 4120 6.548622 AGAAGGAATTAATGATGGTGGTGATG 59.451 38.462 0.00 0.00 0.00 3.07
3661 4121 6.676558 AGAAGGAATTAATGATGGTGGTGAT 58.323 36.000 0.00 0.00 0.00 3.06
3662 4122 6.078456 AGAAGGAATTAATGATGGTGGTGA 57.922 37.500 0.00 0.00 0.00 4.02
3663 4123 7.880160 TTAGAAGGAATTAATGATGGTGGTG 57.120 36.000 0.00 0.00 0.00 4.17
3664 4124 8.893563 TTTTAGAAGGAATTAATGATGGTGGT 57.106 30.769 0.00 0.00 0.00 4.16
3710 4170 8.779354 ACCATTATAGACAACAGAAAGAGTTC 57.221 34.615 0.00 0.00 0.00 3.01
3742 4202 8.732531 GCTCTTCACTACTAGAGAAAAGACTTA 58.267 37.037 0.00 0.00 40.24 2.24
3743 4203 7.231722 TGCTCTTCACTACTAGAGAAAAGACTT 59.768 37.037 0.00 0.00 40.24 3.01
3761 4221 3.521560 CGCCAATACTAAGTGCTCTTCA 58.478 45.455 3.91 0.00 35.36 3.02
3766 4226 0.909623 ACCCGCCAATACTAAGTGCT 59.090 50.000 0.00 0.00 0.00 4.40
3781 4241 3.053896 GGTCCTTTTGCCGACCCG 61.054 66.667 0.00 0.00 42.39 5.28
3826 4286 3.828921 TCACTACACGGAGGCTACATAT 58.171 45.455 0.00 0.00 0.00 1.78
3850 4310 3.660865 GGTGTTCGTTAACTGAGATGGT 58.339 45.455 3.71 0.00 36.51 3.55
3856 4316 1.000060 CCCTCGGTGTTCGTTAACTGA 60.000 52.381 3.71 0.13 40.32 3.41
3862 4322 0.903454 AGGATCCCTCGGTGTTCGTT 60.903 55.000 8.55 0.00 40.32 3.85
3883 4343 4.729918 CTGGGGGTGACTGCCTGC 62.730 72.222 0.00 0.00 0.00 4.85
3970 4430 1.897225 CTGCAGGAGTAGCTGGCACT 61.897 60.000 5.57 0.00 0.00 4.40
3971 4431 1.449246 CTGCAGGAGTAGCTGGCAC 60.449 63.158 5.57 0.00 0.00 5.01
3972 4432 0.979709 ATCTGCAGGAGTAGCTGGCA 60.980 55.000 15.13 0.00 0.00 4.92
3976 4436 3.036819 TGATCAATCTGCAGGAGTAGCT 58.963 45.455 15.13 0.00 0.00 3.32
3979 4439 7.707624 AAAAATTGATCAATCTGCAGGAGTA 57.292 32.000 20.95 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.