AutoCloner

Multiple sequence alignment - TraesCS5A01G214300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G214300	chr5A	100.000	2480	0	0	1	2480	429970333	429967854	0.000000e+00	4580
1	TraesCS5A01G214300	chr5A	98.137	1503	27	1	1	1503	676898613	676897112	0.000000e+00	2619
2	TraesCS5A01G214300	chr5A	97.403	1502	38	1	1	1502	583625014	583626514	0.000000e+00	2556
3	TraesCS5A01G214300	chr5A	95.270	1501	68	3	1	1500	81479735	81481233	0.000000e+00	2375
4	TraesCS5A01G214300	chr5A	91.551	1444	117	5	2	1444	112303134	112304573	0.000000e+00	1986
5	TraesCS5A01G214300	chr6A	97.804	1503	29	1	1	1503	120118366	120119864	0.000000e+00	2590
6	TraesCS5A01G214300	chr6A	88.561	271	29	2	2211	2480	193744711	193744442	6.610000e-86	327
7	TraesCS5A01G214300	chr2A	97.337	1502	40	0	1	1502	478905145	478906646	0.000000e+00	2553
8	TraesCS5A01G214300	chr2D	96.136	1501	58	0	1	1501	190431072	190429572	0.000000e+00	2451
9	TraesCS5A01G214300	chr2D	95.933	1377	52	3	1	1377	650974271	650972899	0.000000e+00	2230
10	TraesCS5A01G214300	chr1B	92.482	1503	109	4	1	1503	527622454	527620956	0.000000e+00	2146
11	TraesCS5A01G214300	chr5D	87.462	662	73	8	1552	2208	326461683	326462339	0.000000e+00	754
12	TraesCS5A01G214300	chr5D	91.144	271	23	1	2211	2480	326463789	326464059	1.400000e-97	366
13	TraesCS5A01G214300	chr5B	83.824	680	78	9	1513	2186	379002532	379003185	3.500000e-173	617
14	TraesCS5A01G214300	chr5B	91.078	269	23	1	2211	2478	379331868	379332136	1.810000e-96	363
15	TraesCS5A01G214300	chr6D	89.591	269	27	1	2213	2480	229211202	229210934	8.490000e-90	340
16	TraesCS5A01G214300	chr7D	88.889	270	28	2	2213	2480	270688692	270688423	5.110000e-87	331
17	TraesCS5A01G214300	chr7D	88.192	271	25	4	2216	2480	312170431	312170162	1.430000e-82	316
18	TraesCS5A01G214300	chr7D	86.667	285	30	6	2203	2480	397830593	397830310	2.400000e-80	309
19	TraesCS5A01G214300	chr4D	88.060	268	30	2	2213	2479	195525540	195525274	1.430000e-82	316
20	TraesCS5A01G214300	chr4D	87.823	271	28	3	2211	2480	248313454	248313720	1.850000e-81	313

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G214300	chr5A	429967854	429970333	2479	True	4580	4580	100.000	1	2480	1	chr5A.!!$R1	2479
1	TraesCS5A01G214300	chr5A	676897112	676898613	1501	True	2619	2619	98.137	1	1503	1	chr5A.!!$R2	1502
2	TraesCS5A01G214300	chr5A	583625014	583626514	1500	False	2556	2556	97.403	1	1502	1	chr5A.!!$F3	1501
3	TraesCS5A01G214300	chr5A	81479735	81481233	1498	False	2375	2375	95.270	1	1500	1	chr5A.!!$F1	1499
4	TraesCS5A01G214300	chr5A	112303134	112304573	1439	False	1986	1986	91.551	2	1444	1	chr5A.!!$F2	1442
5	TraesCS5A01G214300	chr6A	120118366	120119864	1498	False	2590	2590	97.804	1	1503	1	chr6A.!!$F1	1502
6	TraesCS5A01G214300	chr2A	478905145	478906646	1501	False	2553	2553	97.337	1	1502	1	chr2A.!!$F1	1501
7	TraesCS5A01G214300	chr2D	190429572	190431072	1500	True	2451	2451	96.136	1	1501	1	chr2D.!!$R1	1500
8	TraesCS5A01G214300	chr2D	650972899	650974271	1372	True	2230	2230	95.933	1	1377	1	chr2D.!!$R2	1376
9	TraesCS5A01G214300	chr1B	527620956	527622454	1498	True	2146	2146	92.482	1	1503	1	chr1B.!!$R1	1502
10	TraesCS5A01G214300	chr5D	326461683	326464059	2376	False	560	754	89.303	1552	2480	2	chr5D.!!$F1	928
11	TraesCS5A01G214300	chr5B	379002532	379003185	653	False	617	617	83.824	1513	2186	1	chr5B.!!$F1	673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
934	939	3.612681	GGGCCCGTGCTATAGCGA	61.613	66.667	19.55	6.51	45.83	4.93	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1975	2007	0.100325	CAGAGCTACGAGACTGGCTG	59.9	60.0	0.0	0.0	35.01	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	9.064706	CACAATCATGAGAGCTAAATATTTCCT	57.935	33.333	3.39	2.56	0.00	3.36
42	43	6.329986	TGAGAGCTAAATATTTCCTGGATGGA	59.670	38.462	3.39	0.00	44.51	3.41
125	126	5.028131	AGGGGTTAATTCTCTAAGGAACGA	58.972	41.667	0.00	0.00	0.00	3.85
853	858	9.256477	TGATCGTTATAACAGCTTGGTATTTAG	57.744	33.333	15.67	0.00	31.72	1.85
934	939	3.612681	GGGCCCGTGCTATAGCGA	61.613	66.667	19.55	6.51	45.83	4.93
1331	1337	8.648968	GGCTTGCGATTTTACTATTACTAGATC	58.351	37.037	0.00	0.00	0.00	2.75
1520	1526	1.603739	GGAAGCACTCCACAACCCC	60.604	63.158	0.10	0.00	44.67	4.95
1521	1527	1.603739	GAAGCACTCCACAACCCCC	60.604	63.158	0.00	0.00	0.00	5.40
1538	1544	3.711782	CCCCTCCTCCCTCCCCTT	61.712	72.222	0.00	0.00	0.00	3.95
1539	1545	2.367512	CCCTCCTCCCTCCCCTTG	60.368	72.222	0.00	0.00	0.00	3.61
1540	1546	2.456840	CCTCCTCCCTCCCCTTGT	59.543	66.667	0.00	0.00	0.00	3.16
1549	1555	0.393537	CCTCCCCTTGTCAGCATGTC	60.394	60.000	0.00	0.00	37.40	3.06
1550	1556	0.325933	CTCCCCTTGTCAGCATGTCA	59.674	55.000	0.00	0.00	37.40	3.58
1563	1569	1.091771	CATGTCACACTCCCATCGCC	61.092	60.000	0.00	0.00	0.00	5.54
1592	1598	1.755179	GTTGATGTACCAGCCAGCAT	58.245	50.000	0.00	0.00	0.00	3.79
1598	1604	1.227645	TACCAGCCAGCATCATCGC	60.228	57.895	0.00	0.00	0.00	4.58
1653	1659	1.081442	CACGTGTGCTGCTACGAGA	60.081	57.895	27.30	0.00	42.54	4.04
1669	1675	2.814023	AGATGGATCTCTTCGCCGT	58.186	52.632	0.00	0.00	29.30	5.68
1694	1722	2.358003	GCAGTGCAACGAGGCTCT	60.358	61.111	11.09	0.00	45.86	4.09
1695	1723	1.963338	GCAGTGCAACGAGGCTCTT	60.963	57.895	11.09	0.00	45.86	2.85
1696	1724	1.905922	GCAGTGCAACGAGGCTCTTC	61.906	60.000	11.09	0.00	45.86	2.87
1697	1725	0.601046	CAGTGCAACGAGGCTCTTCA	60.601	55.000	13.50	2.07	45.86	3.02
1698	1726	0.322975	AGTGCAACGAGGCTCTTCAT	59.677	50.000	13.50	0.00	45.86	2.57
1699	1727	1.160137	GTGCAACGAGGCTCTTCATT	58.840	50.000	13.50	0.00	34.04	2.57
1700	1728	1.135859	GTGCAACGAGGCTCTTCATTG	60.136	52.381	13.50	12.08	34.04	2.82
1701	1729	0.179179	GCAACGAGGCTCTTCATTGC	60.179	55.000	19.64	19.64	36.07	3.56
1702	1730	1.159285	CAACGAGGCTCTTCATTGCA	58.841	50.000	13.50	0.00	0.00	4.08
1703	1731	1.129998	CAACGAGGCTCTTCATTGCAG	59.870	52.381	13.50	0.00	0.00	4.41
1704	1732	1.023513	ACGAGGCTCTTCATTGCAGC	61.024	55.000	13.50	0.00	0.00	5.25
1705	1733	0.743701	CGAGGCTCTTCATTGCAGCT	60.744	55.000	13.50	0.00	33.38	4.24
1706	1734	1.015868	GAGGCTCTTCATTGCAGCTC	58.984	55.000	7.40	0.00	33.38	4.09
1707	1735	0.394080	AGGCTCTTCATTGCAGCTCC	60.394	55.000	0.00	0.00	33.38	4.70
1708	1736	1.712977	GGCTCTTCATTGCAGCTCCG	61.713	60.000	0.00	0.00	33.38	4.63
1709	1737	1.712977	GCTCTTCATTGCAGCTCCGG	61.713	60.000	0.00	0.00	0.00	5.14
1710	1738	1.712977	CTCTTCATTGCAGCTCCGGC	61.713	60.000	0.00	0.00	39.06	6.13
1711	1739	3.104602	CTTCATTGCAGCTCCGGCG	62.105	63.158	0.00	0.00	44.37	6.46
1712	1740	3.604129	TTCATTGCAGCTCCGGCGA	62.604	57.895	9.30	0.00	44.37	5.54
1713	1741	3.869272	CATTGCAGCTCCGGCGAC	61.869	66.667	9.30	0.00	44.37	5.19
1714	1742	4.393155	ATTGCAGCTCCGGCGACA	62.393	61.111	9.30	0.00	44.37	4.35
1731	1759	1.601903	GACACTTCATTGCAACCACGA	59.398	47.619	0.00	0.00	0.00	4.35
1737	1765	0.452987	CATTGCAACCACGATGGAGG	59.547	55.000	0.00	0.00	40.96	4.30
1743	1771	1.535462	CAACCACGATGGAGGTTCAAC	59.465	52.381	6.60	0.00	44.04	3.18
1754	1782	1.666872	GGTTCAACGACCACTCCGG	60.667	63.158	0.00	0.00	39.57	5.14
1755	1783	2.029964	TTCAACGACCACTCCGGC	59.970	61.111	0.00	0.00	39.03	6.13
1800	1828	1.807142	GAGCTTCAACAACCCTGTAGC	59.193	52.381	0.00	0.00	35.66	3.58
1843	1871	2.338015	CGGCAAAGCTCCACTGCAT	61.338	57.895	10.91	0.00	37.83	3.96
1881	1909	1.153188	TCCATGGTAGCACATGCGG	60.153	57.895	12.58	0.00	45.29	5.69
1882	1910	1.451927	CCATGGTAGCACATGCGGT	60.452	57.895	2.57	0.00	45.29	5.68
1893	1925	3.706373	ATGCGGTGGCGGTCTCTT	61.706	61.111	0.00	0.00	44.10	2.85
1921	1953	4.569180	ACGCCCTTGCAGCAGTGT	62.569	61.111	0.00	0.00	37.32	3.55
1928	1960	2.209064	CTTGCAGCAGTGTGGGCATC	62.209	60.000	0.00	0.00	35.98	3.91
1956	1988	0.895100	GAGATTGCAACACCCTGGCA	60.895	55.000	0.00	0.00	35.41	4.92
1979	2011	2.750237	CCCCTTGTTACGCCAGCC	60.750	66.667	0.00	0.00	0.00	4.85
1987	2019	2.273179	TTACGCCAGCCAGTCTCGT	61.273	57.895	0.00	0.00	37.19	4.18
2015	2047	3.585020	CGCAGCTGTGGTTGTGCA	61.585	61.111	19.78	0.00	35.57	4.57
2082	2115	0.249073	GACCATGACCGATGACTCCG	60.249	60.000	0.00	0.00	33.31	4.63
2088	2121	3.461773	CCGATGACTCCGGCCTGT	61.462	66.667	0.00	0.00	40.54	4.00
2092	2125	1.869754	CGATGACTCCGGCCTGTAATG	60.870	57.143	0.00	0.00	0.00	1.90
2128	2161	2.435586	CGGACAAGCAGCAGGAGG	60.436	66.667	0.00	0.00	0.00	4.30
2186	2219	0.034089	GGAATTGGACAGGTGGGAGG	60.034	60.000	0.00	0.00	0.00	4.30
2188	2221	0.995024	AATTGGACAGGTGGGAGGAG	59.005	55.000	0.00	0.00	0.00	3.69
2190	2223	3.403558	GGACAGGTGGGAGGAGCC	61.404	72.222	0.00	0.00	0.00	4.70
2191	2224	2.607750	GACAGGTGGGAGGAGCCA	60.608	66.667	0.00	0.00	38.95	4.75
2208	2241	4.567747	GGAGCCAAGGTCTGAGGAAAAATA	60.568	45.833	0.00	0.00	0.00	1.40
2209	2242	4.998051	AGCCAAGGTCTGAGGAAAAATAA	58.002	39.130	0.00	0.00	0.00	1.40
2278	3759	7.658179	TTGAAAGAATAGTACAGCAGTTGAG	57.342	36.000	0.00	0.00	0.00	3.02
2286	3767	3.999663	AGTACAGCAGTTGAGATCAAAGC	59.000	43.478	11.31	11.31	37.63	3.51
2411	3892	5.825507	AGAACAATACCCTTCGACGTATAC	58.174	41.667	0.00	0.00	0.00	1.47
2439	3920	7.038154	GCATGTAGCACCTTTTATCCAAATA	57.962	36.000	0.00	0.00	44.79	1.40
2445	3926	7.516198	AGCACCTTTTATCCAAATATAGCAG	57.484	36.000	0.00	0.00	0.00	4.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	6.608405	ACTTGCATTCATTAAATCTCCATCCA	59.392	34.615	0.00	0.00	0.00	3.41
125	126	4.694339	GTTTCCAACTCGCCAGATATAGT	58.306	43.478	0.00	0.00	0.00	2.12
175	176	2.538222	TGCACAATTTGGGATCCATGT	58.462	42.857	15.23	7.27	31.53	3.21
260	261	4.698201	TCATCCCAATAACTCGCCATTA	57.302	40.909	0.00	0.00	0.00	1.90
264	265	2.872858	GTCTTCATCCCAATAACTCGCC	59.127	50.000	0.00	0.00	0.00	5.54
265	266	3.798202	AGTCTTCATCCCAATAACTCGC	58.202	45.455	0.00	0.00	0.00	5.03
675	677	1.133606	TCCCAGACCTTTTTCGCCTTT	60.134	47.619	0.00	0.00	0.00	3.11
853	858	2.159000	CCAGTTTACGTCTATCCCACCC	60.159	54.545	0.00	0.00	0.00	4.61
934	939	7.016170	AGGGGAGTTTGCTTTAACATAATTTGT	59.984	33.333	0.00	0.00	41.53	2.83
1279	1285	8.961092	CATAAAATAGCAATCATCGAAAACTGG	58.039	33.333	0.00	0.00	0.00	4.00
1503	1509	1.603739	GGGGGTTGTGGAGTGCTTC	60.604	63.158	0.00	0.00	0.00	3.86
1504	1510	2.520968	GGGGGTTGTGGAGTGCTT	59.479	61.111	0.00	0.00	0.00	3.91
1521	1527	3.711782	AAGGGGAGGGAGGAGGGG	61.712	72.222	0.00	0.00	0.00	4.79
1525	1531	1.081092	CTGACAAGGGGAGGGAGGA	59.919	63.158	0.00	0.00	0.00	3.71
1527	1533	1.277580	ATGCTGACAAGGGGAGGGAG	61.278	60.000	0.00	0.00	0.00	4.30
1536	1542	1.802960	GGAGTGTGACATGCTGACAAG	59.197	52.381	0.00	0.00	0.00	3.16
1538	1544	0.035317	GGGAGTGTGACATGCTGACA	59.965	55.000	0.00	0.00	0.00	3.58
1539	1545	0.035317	TGGGAGTGTGACATGCTGAC	59.965	55.000	0.00	0.00	0.00	3.51
1540	1546	0.986527	ATGGGAGTGTGACATGCTGA	59.013	50.000	0.00	0.00	0.00	4.26
1563	1569	1.082117	GTACATCAACGGTGGAGCGG	61.082	60.000	0.00	0.00	0.00	5.52
1567	1573	0.036765	GCTGGTACATCAACGGTGGA	60.037	55.000	0.00	0.00	38.20	4.02
1575	1581	0.911053	TGATGCTGGCTGGTACATCA	59.089	50.000	8.38	8.38	44.86	3.07
1611	1617	0.671781	GTTGCAGCTCTGTCGGTGAT	60.672	55.000	0.00	0.00	34.46	3.06
1653	1659	0.824109	TCAACGGCGAAGAGATCCAT	59.176	50.000	16.62	0.00	0.00	3.41
1663	1669	1.522806	ACTGCAACTTCAACGGCGA	60.523	52.632	16.62	0.00	0.00	5.54
1694	1722	3.126879	CGCCGGAGCTGCAATGAA	61.127	61.111	5.05	0.00	36.60	2.57
1695	1723	4.081185	TCGCCGGAGCTGCAATGA	62.081	61.111	5.05	0.00	36.60	2.57
1696	1724	3.869272	GTCGCCGGAGCTGCAATG	61.869	66.667	5.05	0.00	36.60	2.82
1697	1725	4.393155	TGTCGCCGGAGCTGCAAT	62.393	61.111	5.05	0.00	36.60	3.56
1701	1729	2.811317	GAAGTGTCGCCGGAGCTG	60.811	66.667	5.05	0.00	36.60	4.24
1702	1730	2.172483	AATGAAGTGTCGCCGGAGCT	62.172	55.000	5.05	0.00	36.60	4.09
1703	1731	1.741770	AATGAAGTGTCGCCGGAGC	60.742	57.895	5.05	0.00	0.00	4.70
1704	1732	1.970917	GCAATGAAGTGTCGCCGGAG	61.971	60.000	5.05	0.00	0.00	4.63
1705	1733	2.032634	GCAATGAAGTGTCGCCGGA	61.033	57.895	5.05	0.00	0.00	5.14
1706	1734	1.851021	TTGCAATGAAGTGTCGCCGG	61.851	55.000	0.00	0.00	0.00	6.13
1707	1735	0.725784	GTTGCAATGAAGTGTCGCCG	60.726	55.000	0.59	0.00	0.00	6.46
1708	1736	0.387239	GGTTGCAATGAAGTGTCGCC	60.387	55.000	0.59	0.00	0.00	5.54
1709	1737	0.310543	TGGTTGCAATGAAGTGTCGC	59.689	50.000	0.59	0.00	0.00	5.19
1710	1738	1.660052	CGTGGTTGCAATGAAGTGTCG	60.660	52.381	0.59	0.00	0.00	4.35
1711	1739	1.601903	TCGTGGTTGCAATGAAGTGTC	59.398	47.619	0.59	0.00	0.00	3.67
1712	1740	1.674359	TCGTGGTTGCAATGAAGTGT	58.326	45.000	0.59	0.00	0.00	3.55
1713	1741	2.587956	CATCGTGGTTGCAATGAAGTG	58.412	47.619	0.59	0.00	0.00	3.16
1714	1742	1.541147	CCATCGTGGTTGCAATGAAGT	59.459	47.619	0.59	0.00	31.35	3.01
1715	1743	1.811965	TCCATCGTGGTTGCAATGAAG	59.188	47.619	0.59	0.00	39.03	3.02
1731	1759	1.002087	GAGTGGTCGTTGAACCTCCAT	59.998	52.381	8.83	0.86	40.20	3.41
1737	1765	2.315386	GCCGGAGTGGTCGTTGAAC	61.315	63.158	5.05	0.00	41.21	3.18
1754	1782	2.430582	TTGCAATGAAAGCGCCGC	60.431	55.556	2.29	0.00	33.85	6.53
1755	1783	2.088178	GGTTGCAATGAAAGCGCCG	61.088	57.895	2.29	0.00	33.85	6.46
1761	1789	2.290367	CTCAGTCGTGGTTGCAATGAAA	59.710	45.455	0.59	0.00	0.00	2.69
1800	1828	1.428219	CCAGAGCTGCAATGAAGCG	59.572	57.895	7.70	0.00	45.59	4.68
1843	1871	4.243008	TTCGCCAGGCCACGTTGA	62.243	61.111	5.01	0.00	0.00	3.18
1881	1909	3.591254	AAGCCGAAGAGACCGCCAC	62.591	63.158	0.00	0.00	0.00	5.01
1882	1910	3.311110	AAGCCGAAGAGACCGCCA	61.311	61.111	0.00	0.00	0.00	5.69
1883	1911	2.815647	CAAGCCGAAGAGACCGCC	60.816	66.667	0.00	0.00	0.00	6.13
1884	1912	3.491652	GCAAGCCGAAGAGACCGC	61.492	66.667	0.00	0.00	0.00	5.68
1885	1913	2.048222	TGCAAGCCGAAGAGACCG	60.048	61.111	0.00	0.00	0.00	4.79
1886	1914	1.301716	TGTGCAAGCCGAAGAGACC	60.302	57.895	0.00	0.00	0.00	3.85
1888	1916	1.664649	CGTGTGCAAGCCGAAGAGA	60.665	57.895	0.00	0.00	0.00	3.10
1934	1966	1.542915	CCAGGGTGTTGCAATCTCAAG	59.457	52.381	0.59	0.00	0.00	3.02
1939	1971	1.588082	CTGCCAGGGTGTTGCAATC	59.412	57.895	0.59	0.00	34.06	2.67
1971	2003	2.675423	TACGAGACTGGCTGGCGT	60.675	61.111	2.70	2.70	38.81	5.68
1975	2007	0.100325	CAGAGCTACGAGACTGGCTG	59.900	60.000	0.00	0.00	35.01	4.85
1976	2008	1.662438	GCAGAGCTACGAGACTGGCT	61.662	60.000	0.00	0.00	37.77	4.75
1979	2011	0.247894	GACGCAGAGCTACGAGACTG	60.248	60.000	9.94	2.13	0.00	3.51
2059	2092	2.961721	CATCGGTCATGGTCGCCG	60.962	66.667	10.95	10.95	46.12	6.46
2074	2107	0.469917	CCATTACAGGCCGGAGTCAT	59.530	55.000	10.86	0.00	0.00	3.06
2085	2118	0.965363	AAACGGGCCTGCCATTACAG	60.965	55.000	12.89	0.00	37.98	2.74
2088	2121	2.347322	GCAAACGGGCCTGCCATTA	61.347	57.895	12.89	0.00	37.98	1.90
2128	2161	1.209998	GCTAGAAATCTCGAACCGGC	58.790	55.000	0.00	0.00	0.00	6.13
2163	2196	1.538047	CCACCTGTCCAATTCCACTG	58.462	55.000	0.00	0.00	0.00	3.66
2186	2219	2.568623	TTTTCCTCAGACCTTGGCTC	57.431	50.000	0.00	0.00	0.00	4.70
2188	2221	5.010282	TCTTATTTTTCCTCAGACCTTGGC	58.990	41.667	0.00	0.00	0.00	4.52
2190	2223	9.672673	TCTTATCTTATTTTTCCTCAGACCTTG	57.327	33.333	0.00	0.00	0.00	3.61
2265	3746	3.748048	TGCTTTGATCTCAACTGCTGTAC	59.252	43.478	14.22	0.00	36.87	2.90
2268	3749	2.551032	TGTGCTTTGATCTCAACTGCTG	59.449	45.455	14.22	0.00	36.87	4.41
2270	3751	3.631145	TTGTGCTTTGATCTCAACTGC	57.369	42.857	9.04	9.04	35.28	4.40
2327	3808	9.981114	TCTTTCGATTACTCTCATATTTGCATA	57.019	29.630	0.00	0.00	0.00	3.14
2382	3863	5.178809	CGTCGAAGGGTATTGTTCTTCTTTT	59.821	40.000	0.00	0.00	35.90	2.27
2383	3864	4.689345	CGTCGAAGGGTATTGTTCTTCTTT	59.311	41.667	0.00	0.00	35.90	2.52
2421	3902	7.062957	ACTGCTATATTTGGATAAAAGGTGCT	58.937	34.615	0.00	0.00	0.00	4.40
2422	3903	7.277174	ACTGCTATATTTGGATAAAAGGTGC	57.723	36.000	0.00	0.00	0.00	5.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.