Multiple sequence alignment - TraesCS5A01G214000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G214000 chr5A 100.000 1770 0 0 840 2609 429734673 429732904 0.000000e+00 3269.0
1 TraesCS5A01G214000 chr5A 100.000 498 0 0 1 498 429735512 429735015 0.000000e+00 920.0
2 TraesCS5A01G214000 chr5A 95.943 493 20 0 1 493 264075256 264074764 0.000000e+00 800.0
3 TraesCS5A01G214000 chr5B 92.378 984 43 11 924 1891 379449114 379450081 0.000000e+00 1373.0
4 TraesCS5A01G214000 chr5D 92.980 755 28 6 924 1663 326745605 326746349 0.000000e+00 1077.0
5 TraesCS5A01G214000 chr5D 91.803 61 5 0 1939 1999 408015487 408015547 4.630000e-13 86.1
6 TraesCS5A01G214000 chr3A 96.755 493 16 0 1 493 486034355 486034847 0.000000e+00 822.0
7 TraesCS5A01G214000 chr3A 96.146 493 19 0 1 493 649850101 649850593 0.000000e+00 806.0
8 TraesCS5A01G214000 chr3A 95.943 493 20 0 1 493 32994479 32993987 0.000000e+00 800.0
9 TraesCS5A01G214000 chr3A 95.943 493 20 0 1 493 708642935 708642443 0.000000e+00 800.0
10 TraesCS5A01G214000 chr1A 96.356 494 17 1 1 493 493927513 493928006 0.000000e+00 811.0
11 TraesCS5A01G214000 chr1A 95.943 493 20 0 1 493 551668259 551667767 0.000000e+00 800.0
12 TraesCS5A01G214000 chr1A 95.582 498 22 0 1 498 105280910 105280413 0.000000e+00 798.0
13 TraesCS5A01G214000 chr2A 95.582 498 22 0 1 498 749880635 749880138 0.000000e+00 798.0
14 TraesCS5A01G214000 chr2A 81.596 614 85 15 2003 2609 133340985 133341577 1.400000e-132 483.0
15 TraesCS5A01G214000 chr4D 87.542 602 63 9 2013 2609 314083603 314084197 0.000000e+00 686.0
16 TraesCS5A01G214000 chr7B 84.641 612 83 8 2001 2606 645534586 645533980 1.340000e-167 599.0
17 TraesCS5A01G214000 chr7B 91.379 58 5 0 2087 2144 645542567 645542510 2.150000e-11 80.5
18 TraesCS5A01G214000 chr3B 82.843 612 98 7 2001 2609 107320811 107321418 2.280000e-150 542.0
19 TraesCS5A01G214000 chr2D 85.618 445 45 8 1985 2428 593232593 593233019 1.420000e-122 449.0
20 TraesCS5A01G214000 chr7D 78.750 640 86 26 2001 2609 155313516 155312896 1.460000e-102 383.0
21 TraesCS5A01G214000 chr7D 85.714 343 48 1 2267 2609 575710249 575709908 6.860000e-96 361.0
22 TraesCS5A01G214000 chr3D 78.922 204 35 6 2406 2609 306032841 306033036 5.860000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G214000 chr5A 429732904 429735512 2608 True 2094.5 3269 100.000 1 2609 2 chr5A.!!$R2 2608
1 TraesCS5A01G214000 chr5B 379449114 379450081 967 False 1373.0 1373 92.378 924 1891 1 chr5B.!!$F1 967
2 TraesCS5A01G214000 chr5D 326745605 326746349 744 False 1077.0 1077 92.980 924 1663 1 chr5D.!!$F1 739
3 TraesCS5A01G214000 chr2A 133340985 133341577 592 False 483.0 483 81.596 2003 2609 1 chr2A.!!$F1 606
4 TraesCS5A01G214000 chr4D 314083603 314084197 594 False 686.0 686 87.542 2013 2609 1 chr4D.!!$F1 596
5 TraesCS5A01G214000 chr7B 645533980 645534586 606 True 599.0 599 84.641 2001 2606 1 chr7B.!!$R1 605
6 TraesCS5A01G214000 chr3B 107320811 107321418 607 False 542.0 542 82.843 2001 2609 1 chr3B.!!$F1 608
7 TraesCS5A01G214000 chr7D 155312896 155313516 620 True 383.0 383 78.750 2001 2609 1 chr7D.!!$R1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
441 442 0.033228 TGCAAAGTGGGCCAATTTCG 59.967 50.0 27.5 22.02 29.07 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1888 1918 0.03779 CTAAGGGCGGCTAGAGATGC 60.038 60.0 9.56 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.556286 TCGAGAGCGAGCAAGAAGA 58.444 52.632 0.00 0.00 42.51 2.87
30 31 0.169230 TCGAGAGCGAGCAAGAAGAC 59.831 55.000 0.00 0.00 42.51 3.01
31 32 0.800300 CGAGAGCGAGCAAGAAGACC 60.800 60.000 0.00 0.00 40.82 3.85
32 33 0.459411 GAGAGCGAGCAAGAAGACCC 60.459 60.000 0.00 0.00 0.00 4.46
33 34 1.188219 AGAGCGAGCAAGAAGACCCA 61.188 55.000 0.00 0.00 0.00 4.51
34 35 0.739112 GAGCGAGCAAGAAGACCCAG 60.739 60.000 0.00 0.00 0.00 4.45
35 36 1.004440 GCGAGCAAGAAGACCCAGT 60.004 57.895 0.00 0.00 0.00 4.00
36 37 1.294659 GCGAGCAAGAAGACCCAGTG 61.295 60.000 0.00 0.00 0.00 3.66
37 38 0.034059 CGAGCAAGAAGACCCAGTGT 59.966 55.000 0.00 0.00 0.00 3.55
38 39 1.541233 CGAGCAAGAAGACCCAGTGTT 60.541 52.381 0.00 0.00 0.00 3.32
39 40 2.576615 GAGCAAGAAGACCCAGTGTTT 58.423 47.619 0.00 0.00 0.00 2.83
40 41 2.291741 GAGCAAGAAGACCCAGTGTTTG 59.708 50.000 0.00 0.00 0.00 2.93
41 42 2.092429 AGCAAGAAGACCCAGTGTTTGA 60.092 45.455 0.00 0.00 0.00 2.69
42 43 2.033424 GCAAGAAGACCCAGTGTTTGAC 59.967 50.000 0.00 0.00 0.00 3.18
43 44 3.278574 CAAGAAGACCCAGTGTTTGACA 58.721 45.455 0.00 0.00 0.00 3.58
57 58 6.224420 GTGTTTGACACTGAACCATACTAC 57.776 41.667 4.06 0.00 45.27 2.73
58 59 5.756347 GTGTTTGACACTGAACCATACTACA 59.244 40.000 4.06 0.00 45.27 2.74
59 60 5.989168 TGTTTGACACTGAACCATACTACAG 59.011 40.000 0.00 0.00 36.58 2.74
60 61 4.801330 TGACACTGAACCATACTACAGG 57.199 45.455 0.00 0.00 35.08 4.00
61 62 3.056107 TGACACTGAACCATACTACAGGC 60.056 47.826 0.00 0.00 35.08 4.85
62 63 2.903784 ACACTGAACCATACTACAGGCA 59.096 45.455 0.00 0.00 35.08 4.75
63 64 3.055819 ACACTGAACCATACTACAGGCAG 60.056 47.826 0.00 0.00 35.08 4.85
64 65 2.501723 ACTGAACCATACTACAGGCAGG 59.498 50.000 0.00 0.00 35.08 4.85
65 66 1.837439 TGAACCATACTACAGGCAGGG 59.163 52.381 0.00 0.00 0.00 4.45
66 67 1.838077 GAACCATACTACAGGCAGGGT 59.162 52.381 0.00 0.00 0.00 4.34
67 68 1.497161 ACCATACTACAGGCAGGGTC 58.503 55.000 0.00 0.00 0.00 4.46
68 69 0.759346 CCATACTACAGGCAGGGTCC 59.241 60.000 0.00 0.00 0.00 4.46
69 70 1.692762 CCATACTACAGGCAGGGTCCT 60.693 57.143 0.00 0.00 36.78 3.85
70 71 1.689273 CATACTACAGGCAGGGTCCTC 59.311 57.143 0.00 0.00 33.25 3.71
71 72 1.008403 TACTACAGGCAGGGTCCTCT 58.992 55.000 0.00 0.00 33.25 3.69
72 73 1.008403 ACTACAGGCAGGGTCCTCTA 58.992 55.000 0.00 0.00 33.25 2.43
73 74 1.063567 ACTACAGGCAGGGTCCTCTAG 60.064 57.143 0.00 0.00 33.25 2.43
74 75 0.397254 TACAGGCAGGGTCCTCTAGC 60.397 60.000 0.00 0.00 33.25 3.42
75 76 2.041405 AGGCAGGGTCCTCTAGCC 60.041 66.667 8.35 8.35 46.88 3.93
82 83 1.954927 GGGTCCTCTAGCCGAAATTG 58.045 55.000 0.00 0.00 35.65 2.32
83 84 1.485066 GGGTCCTCTAGCCGAAATTGA 59.515 52.381 0.00 0.00 35.65 2.57
84 85 2.104963 GGGTCCTCTAGCCGAAATTGAT 59.895 50.000 0.00 0.00 35.65 2.57
85 86 3.394719 GGTCCTCTAGCCGAAATTGATC 58.605 50.000 0.00 0.00 0.00 2.92
86 87 3.181465 GGTCCTCTAGCCGAAATTGATCA 60.181 47.826 0.00 0.00 0.00 2.92
87 88 3.804873 GTCCTCTAGCCGAAATTGATCAC 59.195 47.826 0.00 0.00 0.00 3.06
88 89 3.134458 CCTCTAGCCGAAATTGATCACC 58.866 50.000 0.00 0.00 0.00 4.02
89 90 3.432186 CCTCTAGCCGAAATTGATCACCA 60.432 47.826 0.00 0.00 0.00 4.17
90 91 3.797039 TCTAGCCGAAATTGATCACCAG 58.203 45.455 0.00 0.00 0.00 4.00
91 92 1.098050 AGCCGAAATTGATCACCAGC 58.902 50.000 0.00 0.00 0.00 4.85
92 93 1.098050 GCCGAAATTGATCACCAGCT 58.902 50.000 0.00 0.00 0.00 4.24
93 94 2.092968 AGCCGAAATTGATCACCAGCTA 60.093 45.455 0.00 0.00 0.00 3.32
94 95 2.880890 GCCGAAATTGATCACCAGCTAT 59.119 45.455 0.00 0.00 0.00 2.97
95 96 3.058639 GCCGAAATTGATCACCAGCTATC 60.059 47.826 0.00 0.00 0.00 2.08
96 97 3.185188 CCGAAATTGATCACCAGCTATCG 59.815 47.826 0.00 0.00 0.00 2.92
97 98 3.185188 CGAAATTGATCACCAGCTATCGG 59.815 47.826 0.00 0.00 0.00 4.18
98 99 2.175878 ATTGATCACCAGCTATCGGC 57.824 50.000 0.00 0.00 42.19 5.54
99 100 0.829990 TTGATCACCAGCTATCGGCA 59.170 50.000 0.00 0.00 44.79 5.69
100 101 0.829990 TGATCACCAGCTATCGGCAA 59.170 50.000 0.00 0.00 44.79 4.52
101 102 1.221414 GATCACCAGCTATCGGCAAC 58.779 55.000 0.00 0.00 44.79 4.17
102 103 0.833287 ATCACCAGCTATCGGCAACT 59.167 50.000 0.00 0.00 44.79 3.16
103 104 0.613260 TCACCAGCTATCGGCAACTT 59.387 50.000 0.00 0.00 44.79 2.66
104 105 0.729116 CACCAGCTATCGGCAACTTG 59.271 55.000 0.00 0.00 44.79 3.16
105 106 0.392998 ACCAGCTATCGGCAACTTGG 60.393 55.000 0.00 0.00 44.79 3.61
106 107 0.107703 CCAGCTATCGGCAACTTGGA 60.108 55.000 0.00 0.00 44.79 3.53
107 108 1.475751 CCAGCTATCGGCAACTTGGAT 60.476 52.381 0.00 0.00 44.79 3.41
108 109 2.292267 CAGCTATCGGCAACTTGGATT 58.708 47.619 0.00 0.00 44.79 3.01
109 110 2.032550 CAGCTATCGGCAACTTGGATTG 59.967 50.000 0.00 0.00 44.79 2.67
120 121 4.521146 CAACTTGGATTGCCTATCTCAGT 58.479 43.478 0.00 0.00 33.53 3.41
121 122 5.674525 CAACTTGGATTGCCTATCTCAGTA 58.325 41.667 0.00 0.00 33.53 2.74
122 123 6.294473 CAACTTGGATTGCCTATCTCAGTAT 58.706 40.000 0.00 0.00 33.53 2.12
123 124 5.862845 ACTTGGATTGCCTATCTCAGTATG 58.137 41.667 0.00 0.00 33.53 2.39
124 125 4.277515 TGGATTGCCTATCTCAGTATGC 57.722 45.455 0.00 0.00 32.48 3.14
125 126 3.257393 GGATTGCCTATCTCAGTATGCG 58.743 50.000 0.00 0.00 34.76 4.73
126 127 3.306364 GGATTGCCTATCTCAGTATGCGT 60.306 47.826 0.00 0.00 34.76 5.24
127 128 3.371102 TTGCCTATCTCAGTATGCGTC 57.629 47.619 0.00 0.00 34.76 5.19
128 129 2.306847 TGCCTATCTCAGTATGCGTCA 58.693 47.619 0.00 0.00 34.76 4.35
129 130 2.294512 TGCCTATCTCAGTATGCGTCAG 59.705 50.000 0.00 0.00 34.76 3.51
130 131 2.352225 GCCTATCTCAGTATGCGTCAGG 60.352 54.545 0.00 0.00 34.76 3.86
131 132 3.149981 CCTATCTCAGTATGCGTCAGGA 58.850 50.000 0.00 0.00 34.76 3.86
132 133 3.190327 CCTATCTCAGTATGCGTCAGGAG 59.810 52.174 0.00 0.00 34.76 3.69
133 134 2.420058 TCTCAGTATGCGTCAGGAGA 57.580 50.000 0.00 0.00 34.76 3.71
134 135 2.937519 TCTCAGTATGCGTCAGGAGAT 58.062 47.619 0.00 0.00 34.76 2.75
135 136 2.881513 TCTCAGTATGCGTCAGGAGATC 59.118 50.000 0.00 0.00 34.76 2.75
136 137 1.957177 TCAGTATGCGTCAGGAGATCC 59.043 52.381 0.00 0.00 34.76 3.36
137 138 0.955178 AGTATGCGTCAGGAGATCCG 59.045 55.000 0.00 0.00 42.08 4.18
138 139 0.952280 GTATGCGTCAGGAGATCCGA 59.048 55.000 0.00 0.00 42.08 4.55
139 140 1.068885 GTATGCGTCAGGAGATCCGAG 60.069 57.143 0.00 0.00 42.08 4.63
140 141 0.466372 ATGCGTCAGGAGATCCGAGA 60.466 55.000 0.00 0.00 42.08 4.04
141 142 1.357334 GCGTCAGGAGATCCGAGAC 59.643 63.158 14.02 14.02 42.08 3.36
142 143 2.026522 CGTCAGGAGATCCGAGACC 58.973 63.158 16.67 0.00 40.44 3.85
143 144 1.448922 CGTCAGGAGATCCGAGACCC 61.449 65.000 16.67 0.00 40.44 4.46
144 145 0.395862 GTCAGGAGATCCGAGACCCA 60.396 60.000 13.38 0.00 42.08 4.51
145 146 0.395862 TCAGGAGATCCGAGACCCAC 60.396 60.000 0.00 0.00 42.08 4.61
146 147 0.684479 CAGGAGATCCGAGACCCACA 60.684 60.000 0.00 0.00 42.08 4.17
147 148 0.396417 AGGAGATCCGAGACCCACAG 60.396 60.000 0.00 0.00 42.08 3.66
148 149 1.395826 GGAGATCCGAGACCCACAGG 61.396 65.000 0.00 0.00 40.04 4.00
159 160 3.269578 CCCACAGGTGCATCATCAA 57.730 52.632 0.00 0.00 0.00 2.57
160 161 0.813184 CCCACAGGTGCATCATCAAC 59.187 55.000 0.00 0.00 0.00 3.18
161 162 1.615116 CCCACAGGTGCATCATCAACT 60.615 52.381 0.00 0.00 33.54 3.16
164 165 1.170442 CAGGTGCATCATCAACTGCA 58.830 50.000 0.00 0.00 43.80 4.41
169 170 3.842732 TGCATCATCAACTGCAGAAAG 57.157 42.857 23.35 9.59 43.11 2.62
170 171 3.414269 TGCATCATCAACTGCAGAAAGA 58.586 40.909 23.35 14.88 43.11 2.52
171 172 4.014406 TGCATCATCAACTGCAGAAAGAT 58.986 39.130 23.35 16.48 43.11 2.40
172 173 4.095932 TGCATCATCAACTGCAGAAAGATC 59.904 41.667 23.35 8.57 43.11 2.75
173 174 4.335874 GCATCATCAACTGCAGAAAGATCT 59.664 41.667 23.35 7.06 38.28 2.75
185 186 4.840716 AGAAAGATCTGATTGAGCACCT 57.159 40.909 0.00 0.00 33.59 4.00
186 187 5.946942 AGAAAGATCTGATTGAGCACCTA 57.053 39.130 0.00 0.00 33.59 3.08
187 188 6.497624 AGAAAGATCTGATTGAGCACCTAT 57.502 37.500 0.00 0.00 33.59 2.57
188 189 6.289834 AGAAAGATCTGATTGAGCACCTATG 58.710 40.000 0.00 0.00 33.59 2.23
189 190 4.620589 AGATCTGATTGAGCACCTATGG 57.379 45.455 0.00 0.00 32.67 2.74
190 191 4.229639 AGATCTGATTGAGCACCTATGGA 58.770 43.478 0.00 0.00 32.67 3.41
191 192 4.283978 AGATCTGATTGAGCACCTATGGAG 59.716 45.833 0.00 0.00 32.67 3.86
192 193 3.646534 TCTGATTGAGCACCTATGGAGA 58.353 45.455 0.00 0.00 0.00 3.71
193 194 3.386078 TCTGATTGAGCACCTATGGAGAC 59.614 47.826 0.00 0.00 0.00 3.36
194 195 3.378512 TGATTGAGCACCTATGGAGACT 58.621 45.455 0.00 0.00 0.00 3.24
195 196 3.386078 TGATTGAGCACCTATGGAGACTC 59.614 47.826 0.00 0.00 0.00 3.36
196 197 2.532250 TGAGCACCTATGGAGACTCA 57.468 50.000 4.53 0.00 30.03 3.41
197 198 2.820178 TGAGCACCTATGGAGACTCAA 58.180 47.619 4.53 0.00 29.79 3.02
198 199 2.762887 TGAGCACCTATGGAGACTCAAG 59.237 50.000 4.53 0.00 29.79 3.02
199 200 2.102252 GAGCACCTATGGAGACTCAAGG 59.898 54.545 13.47 13.47 0.00 3.61
200 201 1.139853 GCACCTATGGAGACTCAAGGG 59.860 57.143 17.38 10.12 0.00 3.95
201 202 1.765314 CACCTATGGAGACTCAAGGGG 59.235 57.143 17.38 12.11 0.00 4.79
202 203 1.344496 ACCTATGGAGACTCAAGGGGG 60.344 57.143 17.38 9.66 0.00 5.40
203 204 1.062121 CCTATGGAGACTCAAGGGGGA 60.062 57.143 4.53 0.00 0.00 4.81
204 205 2.043227 CTATGGAGACTCAAGGGGGAC 58.957 57.143 4.53 0.00 0.00 4.46
205 206 0.978146 ATGGAGACTCAAGGGGGACG 60.978 60.000 4.53 0.00 0.00 4.79
206 207 2.579738 GAGACTCAAGGGGGACGC 59.420 66.667 0.00 0.00 43.76 5.19
207 208 3.003763 AGACTCAAGGGGGACGCC 61.004 66.667 0.00 0.00 44.92 5.68
208 209 4.452733 GACTCAAGGGGGACGCCG 62.453 72.222 1.93 0.00 44.92 6.46
210 211 4.760047 CTCAAGGGGGACGCCGTG 62.760 72.222 13.62 13.62 44.92 4.94
216 217 4.077184 GGGGACGCCGTGTGATGA 62.077 66.667 0.00 0.00 0.00 2.92
217 218 2.047655 GGGACGCCGTGTGATGAA 60.048 61.111 0.00 0.00 0.00 2.57
218 219 1.669760 GGGACGCCGTGTGATGAAA 60.670 57.895 0.00 0.00 0.00 2.69
219 220 1.024579 GGGACGCCGTGTGATGAAAT 61.025 55.000 0.00 0.00 0.00 2.17
220 221 1.647346 GGACGCCGTGTGATGAAATA 58.353 50.000 0.00 0.00 0.00 1.40
221 222 1.326548 GGACGCCGTGTGATGAAATAC 59.673 52.381 0.00 0.00 0.00 1.89
222 223 0.996462 ACGCCGTGTGATGAAATACG 59.004 50.000 0.00 0.00 36.39 3.06
223 224 1.273688 CGCCGTGTGATGAAATACGA 58.726 50.000 0.00 0.00 38.72 3.43
224 225 1.255342 CGCCGTGTGATGAAATACGAG 59.745 52.381 0.00 0.00 38.72 4.18
225 226 2.268298 GCCGTGTGATGAAATACGAGT 58.732 47.619 0.00 0.00 38.72 4.18
226 227 2.671396 GCCGTGTGATGAAATACGAGTT 59.329 45.455 0.00 0.00 38.72 3.01
227 228 3.124636 GCCGTGTGATGAAATACGAGTTT 59.875 43.478 0.00 0.00 38.72 2.66
228 229 4.378046 GCCGTGTGATGAAATACGAGTTTT 60.378 41.667 0.00 0.00 38.72 2.43
229 230 5.685841 CCGTGTGATGAAATACGAGTTTTT 58.314 37.500 0.00 0.00 38.72 1.94
230 231 6.619018 GCCGTGTGATGAAATACGAGTTTTTA 60.619 38.462 0.00 0.00 38.72 1.52
231 232 7.461107 CCGTGTGATGAAATACGAGTTTTTAT 58.539 34.615 0.00 0.00 38.72 1.40
232 233 7.960738 CCGTGTGATGAAATACGAGTTTTTATT 59.039 33.333 0.00 0.00 38.72 1.40
233 234 9.325150 CGTGTGATGAAATACGAGTTTTTATTT 57.675 29.630 0.00 0.00 38.72 1.40
347 348 9.885743 GAAATAATTGTGTTGATAATTGAACGC 57.114 29.630 0.00 0.00 33.96 4.84
348 349 7.985634 ATAATTGTGTTGATAATTGAACGCC 57.014 32.000 0.00 0.00 32.66 5.68
349 350 3.463533 TGTGTTGATAATTGAACGCCG 57.536 42.857 0.00 0.00 32.66 6.46
350 351 3.067833 TGTGTTGATAATTGAACGCCGA 58.932 40.909 0.00 0.00 32.66 5.54
351 352 3.124466 TGTGTTGATAATTGAACGCCGAG 59.876 43.478 0.00 0.00 32.66 4.63
352 353 3.369756 GTGTTGATAATTGAACGCCGAGA 59.630 43.478 0.00 0.00 0.00 4.04
353 354 3.369756 TGTTGATAATTGAACGCCGAGAC 59.630 43.478 0.00 0.00 0.00 3.36
354 355 3.239587 TGATAATTGAACGCCGAGACA 57.760 42.857 0.00 0.00 0.00 3.41
355 356 2.927477 TGATAATTGAACGCCGAGACAC 59.073 45.455 0.00 0.00 0.00 3.67
356 357 1.342555 TAATTGAACGCCGAGACACG 58.657 50.000 0.00 0.00 42.18 4.49
365 366 2.355363 CGAGACACGGCGAAACCA 60.355 61.111 16.62 0.00 39.03 3.67
366 367 2.654912 CGAGACACGGCGAAACCAC 61.655 63.158 16.62 0.00 39.03 4.16
367 368 2.654912 GAGACACGGCGAAACCACG 61.655 63.158 16.62 0.00 39.03 4.94
376 377 3.798506 CGAAACCACGCCGAATATG 57.201 52.632 0.00 0.00 0.00 1.78
377 378 1.003851 CGAAACCACGCCGAATATGT 58.996 50.000 0.00 0.00 0.00 2.29
378 379 1.267334 CGAAACCACGCCGAATATGTG 60.267 52.381 0.00 0.00 0.00 3.21
379 380 0.450184 AAACCACGCCGAATATGTGC 59.550 50.000 0.00 0.00 32.32 4.57
380 381 1.373590 AACCACGCCGAATATGTGCC 61.374 55.000 0.00 0.00 32.32 5.01
381 382 1.523711 CCACGCCGAATATGTGCCT 60.524 57.895 0.00 0.00 32.32 4.75
382 383 0.249699 CCACGCCGAATATGTGCCTA 60.250 55.000 0.00 0.00 32.32 3.93
383 384 1.608025 CCACGCCGAATATGTGCCTAT 60.608 52.381 0.00 0.00 32.32 2.57
384 385 2.143122 CACGCCGAATATGTGCCTATT 58.857 47.619 0.00 0.00 0.00 1.73
385 386 2.157668 CACGCCGAATATGTGCCTATTC 59.842 50.000 0.00 0.00 35.61 1.75
386 387 2.037251 ACGCCGAATATGTGCCTATTCT 59.963 45.455 0.00 0.00 36.42 2.40
387 388 2.668457 CGCCGAATATGTGCCTATTCTC 59.332 50.000 8.34 2.16 36.42 2.87
388 389 2.668457 GCCGAATATGTGCCTATTCTCG 59.332 50.000 8.34 0.00 36.42 4.04
389 390 2.668457 CCGAATATGTGCCTATTCTCGC 59.332 50.000 8.34 0.00 36.42 5.03
390 391 2.668457 CGAATATGTGCCTATTCTCGCC 59.332 50.000 8.34 0.00 36.42 5.54
391 392 2.770164 ATATGTGCCTATTCTCGCCC 57.230 50.000 0.00 0.00 0.00 6.13
392 393 1.419381 TATGTGCCTATTCTCGCCCA 58.581 50.000 0.00 0.00 0.00 5.36
393 394 0.767375 ATGTGCCTATTCTCGCCCAT 59.233 50.000 0.00 0.00 0.00 4.00
394 395 1.419381 TGTGCCTATTCTCGCCCATA 58.581 50.000 0.00 0.00 0.00 2.74
395 396 1.977854 TGTGCCTATTCTCGCCCATAT 59.022 47.619 0.00 0.00 0.00 1.78
396 397 2.289631 TGTGCCTATTCTCGCCCATATG 60.290 50.000 0.00 0.00 0.00 1.78
397 398 2.028112 GTGCCTATTCTCGCCCATATGA 60.028 50.000 3.65 0.00 0.00 2.15
398 399 2.234661 TGCCTATTCTCGCCCATATGAG 59.765 50.000 3.65 0.00 0.00 2.90
399 400 2.898705 CCTATTCTCGCCCATATGAGC 58.101 52.381 3.65 0.63 32.20 4.26
400 401 2.419297 CCTATTCTCGCCCATATGAGCC 60.419 54.545 3.65 0.00 32.20 4.70
401 402 0.326264 ATTCTCGCCCATATGAGCCC 59.674 55.000 3.65 0.00 32.20 5.19
402 403 0.764369 TTCTCGCCCATATGAGCCCT 60.764 55.000 3.65 0.00 32.20 5.19
403 404 0.764369 TCTCGCCCATATGAGCCCTT 60.764 55.000 3.65 0.00 32.20 3.95
404 405 0.321122 CTCGCCCATATGAGCCCTTC 60.321 60.000 3.65 0.00 0.00 3.46
405 406 1.053835 TCGCCCATATGAGCCCTTCA 61.054 55.000 3.65 0.00 40.85 3.02
407 408 1.546323 CGCCCATATGAGCCCTTCATT 60.546 52.381 3.65 0.00 44.14 2.57
408 409 2.165998 GCCCATATGAGCCCTTCATTC 58.834 52.381 3.65 0.00 44.14 2.67
409 410 2.430465 CCCATATGAGCCCTTCATTCG 58.570 52.381 3.65 0.00 44.14 3.34
410 411 1.808945 CCATATGAGCCCTTCATTCGC 59.191 52.381 3.65 0.00 44.14 4.70
411 412 1.808945 CATATGAGCCCTTCATTCGCC 59.191 52.381 0.00 0.00 44.14 5.54
412 413 0.249868 TATGAGCCCTTCATTCGCCG 60.250 55.000 0.00 0.00 44.14 6.46
413 414 1.971505 ATGAGCCCTTCATTCGCCGA 61.972 55.000 0.00 0.00 44.14 5.54
414 415 1.449601 GAGCCCTTCATTCGCCGAA 60.450 57.895 0.33 0.33 0.00 4.30
415 416 1.002624 AGCCCTTCATTCGCCGAAA 60.003 52.632 2.60 0.00 0.00 3.46
416 417 0.394352 AGCCCTTCATTCGCCGAAAT 60.394 50.000 2.60 0.00 0.00 2.17
417 418 0.455815 GCCCTTCATTCGCCGAAATT 59.544 50.000 2.60 0.00 0.00 1.82
418 419 1.798813 GCCCTTCATTCGCCGAAATTG 60.799 52.381 2.60 0.00 0.00 2.32
419 420 1.202290 CCCTTCATTCGCCGAAATTGG 60.202 52.381 2.60 4.21 0.00 3.16
420 421 1.742831 CCTTCATTCGCCGAAATTGGA 59.257 47.619 2.60 0.00 0.00 3.53
421 422 2.477863 CCTTCATTCGCCGAAATTGGAC 60.478 50.000 2.60 0.00 0.00 4.02
422 423 2.107950 TCATTCGCCGAAATTGGACT 57.892 45.000 2.60 0.00 0.00 3.85
423 424 1.737236 TCATTCGCCGAAATTGGACTG 59.263 47.619 2.60 0.00 0.00 3.51
424 425 0.451783 ATTCGCCGAAATTGGACTGC 59.548 50.000 2.60 0.00 0.00 4.40
425 426 0.886938 TTCGCCGAAATTGGACTGCA 60.887 50.000 0.00 0.00 0.00 4.41
426 427 0.886938 TCGCCGAAATTGGACTGCAA 60.887 50.000 0.00 0.00 0.00 4.08
427 428 0.039617 CGCCGAAATTGGACTGCAAA 60.040 50.000 0.00 0.00 0.00 3.68
428 429 1.701704 GCCGAAATTGGACTGCAAAG 58.298 50.000 0.00 0.00 0.00 2.77
429 430 1.000274 GCCGAAATTGGACTGCAAAGT 60.000 47.619 0.00 0.00 0.00 2.66
430 431 2.664916 CCGAAATTGGACTGCAAAGTG 58.335 47.619 0.00 0.00 0.00 3.16
431 432 2.607771 CCGAAATTGGACTGCAAAGTGG 60.608 50.000 0.00 0.00 0.00 4.00
432 433 2.607771 CGAAATTGGACTGCAAAGTGGG 60.608 50.000 0.00 0.00 0.00 4.61
433 434 0.681175 AATTGGACTGCAAAGTGGGC 59.319 50.000 0.00 0.00 0.00 5.36
434 435 1.187567 ATTGGACTGCAAAGTGGGCC 61.188 55.000 0.00 0.00 0.00 5.80
435 436 2.203480 GGACTGCAAAGTGGGCCA 60.203 61.111 0.00 0.00 0.00 5.36
436 437 1.832167 GGACTGCAAAGTGGGCCAA 60.832 57.895 8.40 0.00 0.00 4.52
437 438 1.187567 GGACTGCAAAGTGGGCCAAT 61.188 55.000 8.40 3.05 0.00 3.16
438 439 0.681175 GACTGCAAAGTGGGCCAATT 59.319 50.000 14.45 14.45 0.00 2.32
439 440 1.070601 GACTGCAAAGTGGGCCAATTT 59.929 47.619 25.03 25.03 31.76 1.82
440 441 1.070601 ACTGCAAAGTGGGCCAATTTC 59.929 47.619 27.50 21.06 29.07 2.17
441 442 0.033228 TGCAAAGTGGGCCAATTTCG 59.967 50.000 27.50 22.02 29.07 3.46
442 443 0.316841 GCAAAGTGGGCCAATTTCGA 59.683 50.000 27.50 0.00 29.07 3.71
443 444 1.934849 GCAAAGTGGGCCAATTTCGAC 60.935 52.381 27.50 16.55 29.07 4.20
444 445 0.596082 AAAGTGGGCCAATTTCGACG 59.404 50.000 25.03 0.00 24.46 5.12
445 446 1.862602 AAGTGGGCCAATTTCGACGC 61.863 55.000 14.45 0.00 0.00 5.19
446 447 3.059386 TGGGCCAATTTCGACGCC 61.059 61.111 2.13 0.00 40.85 5.68
448 449 4.174129 GGCCAATTTCGACGCCCG 62.174 66.667 0.00 0.00 35.23 6.13
449 450 3.122323 GCCAATTTCGACGCCCGA 61.122 61.111 0.00 0.00 46.94 5.14
456 457 4.093952 TCGACGCCCGAGAACGAC 62.094 66.667 0.00 0.00 43.23 4.34
458 459 4.093952 GACGCCCGAGAACGACGA 62.094 66.667 0.00 0.00 42.66 4.20
459 460 4.395583 ACGCCCGAGAACGACGAC 62.396 66.667 0.00 0.00 42.66 4.34
460 461 4.099170 CGCCCGAGAACGACGACT 62.099 66.667 0.00 0.00 42.66 4.18
461 462 2.504244 GCCCGAGAACGACGACTG 60.504 66.667 0.00 0.00 42.66 3.51
462 463 2.178521 CCCGAGAACGACGACTGG 59.821 66.667 0.00 1.98 42.66 4.00
463 464 2.178521 CCGAGAACGACGACTGGG 59.821 66.667 0.00 7.60 42.66 4.45
464 465 2.504244 CGAGAACGACGACTGGGC 60.504 66.667 0.00 0.00 42.66 5.36
465 466 2.504244 GAGAACGACGACTGGGCG 60.504 66.667 0.00 0.00 37.29 6.13
467 468 1.915614 GAGAACGACGACTGGGCGTA 61.916 60.000 0.00 0.00 45.72 4.42
468 469 1.081242 GAACGACGACTGGGCGTAA 60.081 57.895 0.00 0.00 45.72 3.18
469 470 0.664166 GAACGACGACTGGGCGTAAA 60.664 55.000 0.00 0.00 45.72 2.01
470 471 0.249405 AACGACGACTGGGCGTAAAA 60.249 50.000 0.00 0.00 45.72 1.52
471 472 0.940991 ACGACGACTGGGCGTAAAAC 60.941 55.000 0.00 0.00 45.72 2.43
472 473 1.620413 CGACGACTGGGCGTAAAACC 61.620 60.000 0.08 0.00 45.72 3.27
473 474 1.620413 GACGACTGGGCGTAAAACCG 61.620 60.000 0.08 0.00 45.72 4.44
481 482 3.436924 CGTAAAACCGCCCCCAGC 61.437 66.667 0.00 0.00 38.52 4.85
491 492 4.169696 CCCCCAGCGCCGATTGTA 62.170 66.667 2.29 0.00 0.00 2.41
492 493 2.111043 CCCCAGCGCCGATTGTAT 59.889 61.111 2.29 0.00 0.00 2.29
493 494 1.525995 CCCCAGCGCCGATTGTATT 60.526 57.895 2.29 0.00 0.00 1.89
494 495 1.648720 CCCAGCGCCGATTGTATTG 59.351 57.895 2.29 0.00 0.00 1.90
495 496 1.095228 CCCAGCGCCGATTGTATTGT 61.095 55.000 2.29 0.00 0.00 2.71
496 497 0.304705 CCAGCGCCGATTGTATTGTC 59.695 55.000 2.29 0.00 0.00 3.18
497 498 0.043053 CAGCGCCGATTGTATTGTCG 60.043 55.000 2.29 0.00 37.58 4.35
856 857 4.641645 TGGTGGCAACGGCTGGAG 62.642 66.667 0.00 0.00 40.87 3.86
857 858 4.643387 GGTGGCAACGGCTGGAGT 62.643 66.667 0.00 0.00 40.87 3.85
858 859 3.050275 GTGGCAACGGCTGGAGTC 61.050 66.667 0.00 0.00 40.87 3.36
859 860 4.329545 TGGCAACGGCTGGAGTCC 62.330 66.667 0.73 0.73 40.87 3.85
861 862 4.021925 GCAACGGCTGGAGTCCCT 62.022 66.667 6.74 0.00 36.96 4.20
862 863 2.656069 GCAACGGCTGGAGTCCCTA 61.656 63.158 6.74 0.00 36.96 3.53
863 864 1.980052 CAACGGCTGGAGTCCCTAA 59.020 57.895 6.74 0.00 0.00 2.69
864 865 0.391263 CAACGGCTGGAGTCCCTAAC 60.391 60.000 6.74 0.00 0.00 2.34
865 866 0.544595 AACGGCTGGAGTCCCTAACT 60.545 55.000 6.74 0.00 42.42 2.24
866 867 1.258445 ACGGCTGGAGTCCCTAACTG 61.258 60.000 6.74 0.98 38.74 3.16
867 868 0.970937 CGGCTGGAGTCCCTAACTGA 60.971 60.000 6.74 0.00 38.74 3.41
868 869 0.537653 GGCTGGAGTCCCTAACTGAC 59.462 60.000 6.74 0.00 38.74 3.51
869 870 0.173708 GCTGGAGTCCCTAACTGACG 59.826 60.000 6.74 0.00 38.74 4.35
870 871 0.173708 CTGGAGTCCCTAACTGACGC 59.826 60.000 6.74 0.00 38.74 5.19
871 872 0.251653 TGGAGTCCCTAACTGACGCT 60.252 55.000 6.74 0.00 38.74 5.07
872 873 0.456628 GGAGTCCCTAACTGACGCTC 59.543 60.000 0.00 0.00 38.74 5.03
873 874 1.174783 GAGTCCCTAACTGACGCTCA 58.825 55.000 0.00 0.00 38.74 4.26
874 875 1.751924 GAGTCCCTAACTGACGCTCAT 59.248 52.381 0.00 0.00 38.74 2.90
875 876 2.950309 GAGTCCCTAACTGACGCTCATA 59.050 50.000 0.00 0.00 38.74 2.15
876 877 2.952978 AGTCCCTAACTGACGCTCATAG 59.047 50.000 0.00 0.00 36.65 2.23
877 878 2.688958 GTCCCTAACTGACGCTCATAGT 59.311 50.000 0.00 0.00 0.00 2.12
878 879 3.130693 GTCCCTAACTGACGCTCATAGTT 59.869 47.826 0.00 0.00 38.19 2.24
879 880 4.337555 GTCCCTAACTGACGCTCATAGTTA 59.662 45.833 0.00 0.00 36.22 2.24
880 881 4.337555 TCCCTAACTGACGCTCATAGTTAC 59.662 45.833 0.00 0.00 36.22 2.50
881 882 4.097437 CCCTAACTGACGCTCATAGTTACA 59.903 45.833 0.00 0.00 36.22 2.41
882 883 5.393787 CCCTAACTGACGCTCATAGTTACAA 60.394 44.000 0.00 0.00 36.22 2.41
883 884 5.515626 CCTAACTGACGCTCATAGTTACAAC 59.484 44.000 0.00 0.00 36.22 3.32
884 885 4.785511 ACTGACGCTCATAGTTACAACT 57.214 40.909 0.00 0.00 42.91 3.16
885 886 5.135508 ACTGACGCTCATAGTTACAACTT 57.864 39.130 0.00 0.00 40.37 2.66
886 887 6.263516 ACTGACGCTCATAGTTACAACTTA 57.736 37.500 0.00 0.00 40.37 2.24
887 888 6.091437 ACTGACGCTCATAGTTACAACTTAC 58.909 40.000 0.00 0.00 40.37 2.34
888 889 6.016213 TGACGCTCATAGTTACAACTTACA 57.984 37.500 0.00 0.00 40.37 2.41
889 890 6.448852 TGACGCTCATAGTTACAACTTACAA 58.551 36.000 0.00 0.00 40.37 2.41
890 891 6.584942 TGACGCTCATAGTTACAACTTACAAG 59.415 38.462 0.00 0.00 40.37 3.16
891 892 5.867716 ACGCTCATAGTTACAACTTACAAGG 59.132 40.000 0.00 0.00 40.37 3.61
892 893 5.220416 CGCTCATAGTTACAACTTACAAGGC 60.220 44.000 0.00 0.00 40.37 4.35
893 894 5.875359 GCTCATAGTTACAACTTACAAGGCT 59.125 40.000 0.00 0.00 40.37 4.58
894 895 6.036191 GCTCATAGTTACAACTTACAAGGCTC 59.964 42.308 0.00 0.00 40.37 4.70
895 896 7.241042 TCATAGTTACAACTTACAAGGCTCT 57.759 36.000 0.00 0.00 40.37 4.09
896 897 7.321153 TCATAGTTACAACTTACAAGGCTCTC 58.679 38.462 0.00 0.00 40.37 3.20
897 898 4.557205 AGTTACAACTTACAAGGCTCTCG 58.443 43.478 0.00 0.00 35.21 4.04
898 899 4.280174 AGTTACAACTTACAAGGCTCTCGA 59.720 41.667 0.00 0.00 35.21 4.04
899 900 3.746045 ACAACTTACAAGGCTCTCGAA 57.254 42.857 0.00 0.00 0.00 3.71
900 901 4.067972 ACAACTTACAAGGCTCTCGAAA 57.932 40.909 0.00 0.00 0.00 3.46
901 902 4.448210 ACAACTTACAAGGCTCTCGAAAA 58.552 39.130 0.00 0.00 0.00 2.29
902 903 4.879545 ACAACTTACAAGGCTCTCGAAAAA 59.120 37.500 0.00 0.00 0.00 1.94
924 925 8.523523 AAAAACGTTTGTTAACTAGTTGCTTT 57.476 26.923 18.56 0.97 37.31 3.51
925 926 7.730067 AAACGTTTGTTAACTAGTTGCTTTC 57.270 32.000 18.56 4.73 37.31 2.62
926 927 5.495502 ACGTTTGTTAACTAGTTGCTTTCG 58.504 37.500 18.56 15.94 31.89 3.46
927 928 4.901881 CGTTTGTTAACTAGTTGCTTTCGG 59.098 41.667 18.56 0.00 31.89 4.30
983 984 2.852075 ACTGGCCGGGGAACAGAA 60.852 61.111 18.00 0.00 36.17 3.02
1071 1087 2.282887 AAGCGCGGGTTTCCCAAT 60.283 55.556 8.83 0.00 45.83 3.16
1083 1099 4.820744 CCCAATCACCCCCGCCTG 62.821 72.222 0.00 0.00 0.00 4.85
1161 1177 2.042230 ATCGGGCCCTACTCCGTT 60.042 61.111 22.43 0.00 45.79 4.44
1173 1189 0.708802 ACTCCGTTCCCTTCCTCCTA 59.291 55.000 0.00 0.00 0.00 2.94
1176 1192 0.325390 CCGTTCCCTTCCTCCTACCT 60.325 60.000 0.00 0.00 0.00 3.08
1274 1290 3.827876 GACTTGCTAGAGGTACCCTATCC 59.172 52.174 8.74 5.11 31.76 2.59
1294 1310 3.838244 CCCCCTCGTCTCAATATTCAA 57.162 47.619 0.00 0.00 0.00 2.69
1295 1311 4.357918 CCCCCTCGTCTCAATATTCAAT 57.642 45.455 0.00 0.00 0.00 2.57
1301 1317 6.206498 CCTCGTCTCAATATTCAATACACGA 58.794 40.000 0.00 0.00 33.12 4.35
1417 1434 0.676151 GAGCAAAGAGGTGGAGGCAG 60.676 60.000 0.00 0.00 0.00 4.85
1618 1635 4.051237 GCCAGAAAATTGAACTGTTGTCC 58.949 43.478 0.00 0.00 0.00 4.02
1633 1650 3.263261 GTTGTCCTCTTTCCTTCCGATC 58.737 50.000 0.00 0.00 0.00 3.69
1634 1651 2.536066 TGTCCTCTTTCCTTCCGATCA 58.464 47.619 0.00 0.00 0.00 2.92
1682 1712 2.493713 CTCCGTAGCATCCAGTACAC 57.506 55.000 0.00 0.00 0.00 2.90
1721 1751 9.273016 CCATTACTACATTCATACCGATTTCTT 57.727 33.333 0.00 0.00 0.00 2.52
1734 1764 9.580916 CATACCGATTTCTTAATTGTGAATACG 57.419 33.333 0.00 2.42 0.00 3.06
1767 1797 2.368548 TGGAGAAGTTGCTGCTTGAGTA 59.631 45.455 0.00 0.00 0.00 2.59
1805 1835 5.994054 AGCATCTACGCATTGAGATTTGTAT 59.006 36.000 0.00 0.00 29.73 2.29
1806 1836 7.154656 AGCATCTACGCATTGAGATTTGTATA 58.845 34.615 0.00 0.00 29.73 1.47
1813 1843 6.082338 CGCATTGAGATTTGTATAAGATGCC 58.918 40.000 0.00 0.00 35.25 4.40
1818 1848 6.345298 TGAGATTTGTATAAGATGCCGTCAA 58.655 36.000 0.00 0.00 0.00 3.18
1844 1874 8.947115 ACTGTTTCTATAGCATGTTTTTAGTCC 58.053 33.333 0.00 0.00 0.00 3.85
1852 1882 4.759693 AGCATGTTTTTAGTCCGAATGTGA 59.240 37.500 0.00 0.00 0.00 3.58
1860 1890 8.718734 GTTTTTAGTCCGAATGTGATAAGACTT 58.281 33.333 0.00 0.00 36.14 3.01
1861 1891 8.475331 TTTTAGTCCGAATGTGATAAGACTTC 57.525 34.615 0.00 0.00 36.14 3.01
1863 1893 3.797256 GTCCGAATGTGATAAGACTTCCG 59.203 47.826 0.00 0.00 0.00 4.30
1878 1908 0.614294 TTCCGAAACGATAAGGGCCA 59.386 50.000 6.18 0.00 0.00 5.36
1884 1914 2.766345 AACGATAAGGGCCAAACGTA 57.234 45.000 6.18 0.00 33.76 3.57
1887 1917 2.234414 ACGATAAGGGCCAAACGTAAGA 59.766 45.455 6.18 0.00 43.62 2.10
1888 1918 2.864343 CGATAAGGGCCAAACGTAAGAG 59.136 50.000 6.18 0.00 43.62 2.85
1889 1919 2.103537 TAAGGGCCAAACGTAAGAGC 57.896 50.000 6.18 0.00 43.62 4.09
1890 1920 0.109723 AAGGGCCAAACGTAAGAGCA 59.890 50.000 6.18 0.00 43.62 4.26
1891 1921 0.328258 AGGGCCAAACGTAAGAGCAT 59.672 50.000 6.18 0.00 43.62 3.79
1892 1922 0.733150 GGGCCAAACGTAAGAGCATC 59.267 55.000 4.39 0.00 43.62 3.91
1903 1933 2.341911 GAGCATCTCTAGCCGCCC 59.658 66.667 0.00 0.00 0.00 6.13
1904 1934 2.123077 AGCATCTCTAGCCGCCCT 60.123 61.111 0.00 0.00 0.00 5.19
1905 1935 1.753368 GAGCATCTCTAGCCGCCCTT 61.753 60.000 0.00 0.00 0.00 3.95
1906 1936 0.470080 AGCATCTCTAGCCGCCCTTA 60.470 55.000 0.00 0.00 0.00 2.69
1907 1937 0.037790 GCATCTCTAGCCGCCCTTAG 60.038 60.000 0.00 0.00 0.00 2.18
1908 1938 0.605589 CATCTCTAGCCGCCCTTAGG 59.394 60.000 0.00 0.00 0.00 2.69
1921 1951 3.214696 CCCTTAGGCCTTGTGGAATAG 57.785 52.381 12.58 0.00 34.57 1.73
1922 1952 2.158608 CCCTTAGGCCTTGTGGAATAGG 60.159 54.545 12.58 5.31 34.57 2.57
1923 1953 2.777692 CCTTAGGCCTTGTGGAATAGGA 59.222 50.000 12.58 0.00 33.13 2.94
1924 1954 3.181450 CCTTAGGCCTTGTGGAATAGGAG 60.181 52.174 12.58 0.00 33.13 3.69
1925 1955 1.216990 AGGCCTTGTGGAATAGGAGG 58.783 55.000 0.00 0.00 33.13 4.30
1926 1956 0.919710 GGCCTTGTGGAATAGGAGGT 59.080 55.000 0.00 0.00 33.13 3.85
1927 1957 1.408822 GGCCTTGTGGAATAGGAGGTG 60.409 57.143 0.00 0.00 33.13 4.00
1928 1958 2.019156 GCCTTGTGGAATAGGAGGTGC 61.019 57.143 0.00 0.00 33.13 5.01
1929 1959 1.561542 CCTTGTGGAATAGGAGGTGCT 59.438 52.381 0.00 0.00 33.13 4.40
1930 1960 2.025887 CCTTGTGGAATAGGAGGTGCTT 60.026 50.000 0.00 0.00 33.13 3.91
1931 1961 3.199946 CCTTGTGGAATAGGAGGTGCTTA 59.800 47.826 0.00 0.00 33.13 3.09
1932 1962 4.446371 CTTGTGGAATAGGAGGTGCTTAG 58.554 47.826 0.00 0.00 0.00 2.18
1933 1963 2.771943 TGTGGAATAGGAGGTGCTTAGG 59.228 50.000 0.00 0.00 0.00 2.69
1934 1964 2.104963 GTGGAATAGGAGGTGCTTAGGG 59.895 54.545 0.00 0.00 0.00 3.53
1935 1965 2.022428 TGGAATAGGAGGTGCTTAGGGA 60.022 50.000 0.00 0.00 0.00 4.20
1936 1966 3.046374 GGAATAGGAGGTGCTTAGGGAA 58.954 50.000 0.00 0.00 0.00 3.97
1937 1967 3.458487 GGAATAGGAGGTGCTTAGGGAAA 59.542 47.826 0.00 0.00 0.00 3.13
1938 1968 4.445019 GGAATAGGAGGTGCTTAGGGAAAG 60.445 50.000 0.00 0.00 38.32 2.62
1939 1969 2.046280 AGGAGGTGCTTAGGGAAAGT 57.954 50.000 0.00 0.00 37.53 2.66
1940 1970 1.630878 AGGAGGTGCTTAGGGAAAGTG 59.369 52.381 0.00 0.00 37.53 3.16
1941 1971 1.454201 GAGGTGCTTAGGGAAAGTGC 58.546 55.000 0.00 0.00 37.53 4.40
1942 1972 1.003696 GAGGTGCTTAGGGAAAGTGCT 59.996 52.381 0.00 0.00 37.53 4.40
1943 1973 1.425448 AGGTGCTTAGGGAAAGTGCTT 59.575 47.619 0.00 0.00 37.53 3.91
1944 1974 2.642807 AGGTGCTTAGGGAAAGTGCTTA 59.357 45.455 0.00 0.00 37.53 3.09
1945 1975 3.073946 AGGTGCTTAGGGAAAGTGCTTAA 59.926 43.478 0.00 0.00 37.53 1.85
1946 1976 3.824443 GGTGCTTAGGGAAAGTGCTTAAA 59.176 43.478 0.00 0.00 37.53 1.52
1947 1977 4.082733 GGTGCTTAGGGAAAGTGCTTAAAG 60.083 45.833 0.00 0.00 37.53 1.85
1948 1978 4.760204 GTGCTTAGGGAAAGTGCTTAAAGA 59.240 41.667 0.00 0.00 37.53 2.52
1949 1979 5.240844 GTGCTTAGGGAAAGTGCTTAAAGAA 59.759 40.000 0.00 0.00 37.53 2.52
1950 1980 5.830991 TGCTTAGGGAAAGTGCTTAAAGAAA 59.169 36.000 0.00 0.00 37.53 2.52
1951 1981 6.493458 TGCTTAGGGAAAGTGCTTAAAGAAAT 59.507 34.615 0.00 0.00 37.53 2.17
1952 1982 7.668052 TGCTTAGGGAAAGTGCTTAAAGAAATA 59.332 33.333 0.00 0.00 37.53 1.40
1953 1983 8.520351 GCTTAGGGAAAGTGCTTAAAGAAATAA 58.480 33.333 0.00 0.00 37.53 1.40
1956 1986 7.667557 AGGGAAAGTGCTTAAAGAAATAAACC 58.332 34.615 0.00 0.00 0.00 3.27
1957 1987 7.289084 AGGGAAAGTGCTTAAAGAAATAAACCA 59.711 33.333 0.00 0.00 0.00 3.67
1958 1988 7.598869 GGGAAAGTGCTTAAAGAAATAAACCAG 59.401 37.037 0.00 0.00 0.00 4.00
1959 1989 8.357402 GGAAAGTGCTTAAAGAAATAAACCAGA 58.643 33.333 0.00 0.00 0.00 3.86
1960 1990 9.181805 GAAAGTGCTTAAAGAAATAAACCAGAC 57.818 33.333 0.00 0.00 0.00 3.51
1961 1991 8.465273 AAGTGCTTAAAGAAATAAACCAGACT 57.535 30.769 0.00 0.00 0.00 3.24
1962 1992 8.465273 AGTGCTTAAAGAAATAAACCAGACTT 57.535 30.769 0.00 0.00 0.00 3.01
1963 1993 8.914011 AGTGCTTAAAGAAATAAACCAGACTTT 58.086 29.630 0.00 0.00 0.00 2.66
1964 1994 9.529325 GTGCTTAAAGAAATAAACCAGACTTTT 57.471 29.630 0.00 0.00 0.00 2.27
1989 2019 9.623350 TTTTTAAGCACCGGTGTTTATTTATAC 57.377 29.630 35.01 16.93 36.43 1.47
1990 2020 7.918536 TTAAGCACCGGTGTTTATTTATACA 57.081 32.000 35.01 20.70 36.43 2.29
1991 2021 6.431198 AAGCACCGGTGTTTATTTATACAG 57.569 37.500 32.15 4.62 32.21 2.74
1992 2022 4.879545 AGCACCGGTGTTTATTTATACAGG 59.120 41.667 33.92 4.71 35.04 4.00
1993 2023 4.035909 GCACCGGTGTTTATTTATACAGGG 59.964 45.833 33.92 4.30 33.50 4.45
1994 2024 5.187687 CACCGGTGTTTATTTATACAGGGT 58.812 41.667 26.95 0.00 34.42 4.34
1995 2025 6.347696 CACCGGTGTTTATTTATACAGGGTA 58.652 40.000 26.95 0.00 33.15 3.69
1996 2026 6.480981 CACCGGTGTTTATTTATACAGGGTAG 59.519 42.308 26.95 0.00 33.15 3.18
1997 2027 6.383726 ACCGGTGTTTATTTATACAGGGTAGA 59.616 38.462 6.12 0.00 33.15 2.59
1998 2028 6.703165 CCGGTGTTTATTTATACAGGGTAGAC 59.297 42.308 0.00 0.00 0.00 2.59
1999 2029 6.703165 CGGTGTTTATTTATACAGGGTAGACC 59.297 42.308 0.00 0.00 40.67 3.85
2093 2126 3.517602 AGTTTTGAAAAGGTGTTTCGCC 58.482 40.909 0.00 0.00 0.00 5.54
2095 2128 3.430333 TTTGAAAAGGTGTTTCGCCTC 57.570 42.857 2.27 0.00 44.35 4.70
2108 2141 2.448926 TCGCCTCAGAAATGAACGAA 57.551 45.000 0.00 0.00 0.00 3.85
2219 2283 3.109928 GCCTACCCTAACCCTAAACTGA 58.890 50.000 0.00 0.00 0.00 3.41
2229 2293 7.399634 CCTAACCCTAAACTGACCAAAATAGA 58.600 38.462 0.00 0.00 0.00 1.98
2321 2385 0.726256 GAGGTGAGGTCGACGTACTC 59.274 60.000 11.30 14.41 0.00 2.59
2347 2411 3.660111 GCACTTTGGCTTCGCGGT 61.660 61.111 6.13 0.00 0.00 5.68
2413 2477 2.959071 GCTCGAGCTGGACATCGC 60.959 66.667 29.88 0.00 38.79 4.58
2431 2495 3.273654 TGACCTCCTCCTCCCGGT 61.274 66.667 0.00 0.00 0.00 5.28
2469 2539 4.435970 TCCTCCTCCCGCGCACTA 62.436 66.667 8.75 0.00 0.00 2.74
2587 2661 1.219124 GAGCTCCATCTTCACCGCA 59.781 57.895 0.87 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.861750 GCTCGCTCTCGATGATCATGTT 60.862 50.000 14.30 0.00 44.56 2.71
2 3 1.335780 GCTCGCTCTCGATGATCATGT 60.336 52.381 14.30 0.00 44.56 3.21
3 4 1.335689 TGCTCGCTCTCGATGATCATG 60.336 52.381 14.30 5.89 44.56 3.07
4 5 0.957362 TGCTCGCTCTCGATGATCAT 59.043 50.000 8.25 8.25 44.56 2.45
5 6 0.740737 TTGCTCGCTCTCGATGATCA 59.259 50.000 0.00 0.00 44.56 2.92
6 7 1.001924 TCTTGCTCGCTCTCGATGATC 60.002 52.381 0.00 0.00 44.56 2.92
7 8 1.028130 TCTTGCTCGCTCTCGATGAT 58.972 50.000 0.00 0.00 44.56 2.45
8 9 0.811281 TTCTTGCTCGCTCTCGATGA 59.189 50.000 0.00 0.00 44.56 2.92
9 10 1.198767 CTTCTTGCTCGCTCTCGATG 58.801 55.000 0.00 0.00 44.56 3.84
10 11 1.098869 TCTTCTTGCTCGCTCTCGAT 58.901 50.000 0.00 0.00 44.56 3.59
11 12 0.169230 GTCTTCTTGCTCGCTCTCGA 59.831 55.000 0.00 0.00 43.28 4.04
12 13 0.800300 GGTCTTCTTGCTCGCTCTCG 60.800 60.000 0.00 0.00 0.00 4.04
13 14 0.459411 GGGTCTTCTTGCTCGCTCTC 60.459 60.000 0.00 0.00 0.00 3.20
14 15 1.188219 TGGGTCTTCTTGCTCGCTCT 61.188 55.000 0.00 0.00 0.00 4.09
15 16 0.739112 CTGGGTCTTCTTGCTCGCTC 60.739 60.000 0.00 0.00 0.00 5.03
16 17 1.294780 CTGGGTCTTCTTGCTCGCT 59.705 57.895 0.00 0.00 0.00 4.93
17 18 1.004440 ACTGGGTCTTCTTGCTCGC 60.004 57.895 0.00 0.00 0.00 5.03
18 19 0.034059 ACACTGGGTCTTCTTGCTCG 59.966 55.000 0.00 0.00 0.00 5.03
19 20 2.262423 AACACTGGGTCTTCTTGCTC 57.738 50.000 0.00 0.00 0.00 4.26
20 21 2.092429 TCAAACACTGGGTCTTCTTGCT 60.092 45.455 0.00 0.00 0.00 3.91
21 22 2.033424 GTCAAACACTGGGTCTTCTTGC 59.967 50.000 0.00 0.00 0.00 4.01
22 23 3.065371 GTGTCAAACACTGGGTCTTCTTG 59.935 47.826 3.03 0.00 45.27 3.02
23 24 3.279434 GTGTCAAACACTGGGTCTTCTT 58.721 45.455 3.03 0.00 45.27 2.52
24 25 2.919228 GTGTCAAACACTGGGTCTTCT 58.081 47.619 3.03 0.00 45.27 2.85
35 36 5.919755 TGTAGTATGGTTCAGTGTCAAACA 58.080 37.500 0.00 0.00 0.00 2.83
36 37 5.408604 CCTGTAGTATGGTTCAGTGTCAAAC 59.591 44.000 0.00 0.00 0.00 2.93
37 38 5.547465 CCTGTAGTATGGTTCAGTGTCAAA 58.453 41.667 0.00 0.00 0.00 2.69
38 39 4.562757 GCCTGTAGTATGGTTCAGTGTCAA 60.563 45.833 0.00 0.00 0.00 3.18
39 40 3.056107 GCCTGTAGTATGGTTCAGTGTCA 60.056 47.826 0.00 0.00 0.00 3.58
40 41 3.056107 TGCCTGTAGTATGGTTCAGTGTC 60.056 47.826 0.00 0.00 0.00 3.67
41 42 2.903784 TGCCTGTAGTATGGTTCAGTGT 59.096 45.455 0.00 0.00 0.00 3.55
42 43 3.525537 CTGCCTGTAGTATGGTTCAGTG 58.474 50.000 0.00 0.00 0.00 3.66
43 44 2.501723 CCTGCCTGTAGTATGGTTCAGT 59.498 50.000 0.00 0.00 0.00 3.41
44 45 2.158900 CCCTGCCTGTAGTATGGTTCAG 60.159 54.545 0.00 0.00 0.00 3.02
45 46 1.837439 CCCTGCCTGTAGTATGGTTCA 59.163 52.381 0.00 0.00 0.00 3.18
46 47 1.838077 ACCCTGCCTGTAGTATGGTTC 59.162 52.381 0.00 0.00 0.00 3.62
47 48 1.838077 GACCCTGCCTGTAGTATGGTT 59.162 52.381 0.00 0.00 29.31 3.67
48 49 1.497161 GACCCTGCCTGTAGTATGGT 58.503 55.000 0.00 0.00 31.82 3.55
49 50 0.759346 GGACCCTGCCTGTAGTATGG 59.241 60.000 0.00 0.00 0.00 2.74
50 51 1.689273 GAGGACCCTGCCTGTAGTATG 59.311 57.143 0.00 0.00 38.73 2.39
51 52 1.576272 AGAGGACCCTGCCTGTAGTAT 59.424 52.381 0.00 0.00 38.73 2.12
52 53 1.008403 AGAGGACCCTGCCTGTAGTA 58.992 55.000 0.00 0.00 38.73 1.82
53 54 1.008403 TAGAGGACCCTGCCTGTAGT 58.992 55.000 0.00 0.00 38.73 2.73
54 55 1.698506 CTAGAGGACCCTGCCTGTAG 58.301 60.000 0.00 0.00 43.04 2.74
55 56 0.397254 GCTAGAGGACCCTGCCTGTA 60.397 60.000 0.00 0.00 38.73 2.74
56 57 1.687493 GCTAGAGGACCCTGCCTGT 60.687 63.158 0.00 0.00 38.73 4.00
57 58 2.439104 GGCTAGAGGACCCTGCCTG 61.439 68.421 8.24 0.00 38.73 4.85
58 59 2.041405 GGCTAGAGGACCCTGCCT 60.041 66.667 8.24 0.00 42.17 4.75
59 60 3.541713 CGGCTAGAGGACCCTGCC 61.542 72.222 5.97 5.97 40.14 4.85
60 61 1.614241 TTTCGGCTAGAGGACCCTGC 61.614 60.000 0.00 0.00 0.00 4.85
61 62 1.123928 ATTTCGGCTAGAGGACCCTG 58.876 55.000 0.00 0.00 0.00 4.45
62 63 1.486726 CAATTTCGGCTAGAGGACCCT 59.513 52.381 0.00 0.00 0.00 4.34
63 64 1.485066 TCAATTTCGGCTAGAGGACCC 59.515 52.381 0.00 0.00 0.00 4.46
64 65 2.981859 TCAATTTCGGCTAGAGGACC 57.018 50.000 0.00 0.00 0.00 4.46
65 66 3.804873 GTGATCAATTTCGGCTAGAGGAC 59.195 47.826 0.00 0.00 0.00 3.85
66 67 3.181465 GGTGATCAATTTCGGCTAGAGGA 60.181 47.826 0.00 0.00 0.00 3.71
67 68 3.134458 GGTGATCAATTTCGGCTAGAGG 58.866 50.000 0.00 0.00 0.00 3.69
68 69 3.797039 TGGTGATCAATTTCGGCTAGAG 58.203 45.455 0.00 0.00 0.00 2.43
69 70 3.797039 CTGGTGATCAATTTCGGCTAGA 58.203 45.455 0.00 0.00 0.00 2.43
70 71 2.289002 GCTGGTGATCAATTTCGGCTAG 59.711 50.000 0.00 0.00 0.00 3.42
71 72 2.092968 AGCTGGTGATCAATTTCGGCTA 60.093 45.455 16.39 0.00 38.17 3.93
72 73 1.098050 GCTGGTGATCAATTTCGGCT 58.902 50.000 0.00 0.00 0.00 5.52
73 74 1.098050 AGCTGGTGATCAATTTCGGC 58.902 50.000 0.00 4.72 0.00 5.54
74 75 3.185188 CGATAGCTGGTGATCAATTTCGG 59.815 47.826 0.00 0.00 0.00 4.30
75 76 3.185188 CCGATAGCTGGTGATCAATTTCG 59.815 47.826 0.00 0.04 0.00 3.46
76 77 3.058639 GCCGATAGCTGGTGATCAATTTC 60.059 47.826 0.00 0.00 38.99 2.17
77 78 2.880890 GCCGATAGCTGGTGATCAATTT 59.119 45.455 0.00 0.00 38.99 1.82
78 79 2.158769 TGCCGATAGCTGGTGATCAATT 60.159 45.455 0.00 0.00 44.23 2.32
79 80 1.417517 TGCCGATAGCTGGTGATCAAT 59.582 47.619 0.00 0.00 44.23 2.57
80 81 0.829990 TGCCGATAGCTGGTGATCAA 59.170 50.000 0.00 0.00 44.23 2.57
81 82 0.829990 TTGCCGATAGCTGGTGATCA 59.170 50.000 0.00 0.00 44.23 2.92
82 83 1.202580 AGTTGCCGATAGCTGGTGATC 60.203 52.381 0.00 0.00 44.23 2.92
83 84 0.833287 AGTTGCCGATAGCTGGTGAT 59.167 50.000 0.00 0.00 44.23 3.06
84 85 0.613260 AAGTTGCCGATAGCTGGTGA 59.387 50.000 0.00 0.00 44.23 4.02
85 86 0.729116 CAAGTTGCCGATAGCTGGTG 59.271 55.000 0.00 0.00 44.23 4.17
86 87 0.392998 CCAAGTTGCCGATAGCTGGT 60.393 55.000 0.00 0.00 44.23 4.00
87 88 0.107703 TCCAAGTTGCCGATAGCTGG 60.108 55.000 0.00 0.00 44.23 4.85
88 89 1.959042 ATCCAAGTTGCCGATAGCTG 58.041 50.000 0.00 0.00 44.23 4.24
89 90 2.292267 CAATCCAAGTTGCCGATAGCT 58.708 47.619 0.00 0.00 44.23 3.32
90 91 1.268743 GCAATCCAAGTTGCCGATAGC 60.269 52.381 0.00 0.00 46.69 2.97
91 92 2.763249 GCAATCCAAGTTGCCGATAG 57.237 50.000 0.00 0.00 46.69 2.08
98 99 4.521146 ACTGAGATAGGCAATCCAAGTTG 58.479 43.478 0.00 0.00 34.90 3.16
99 100 4.851639 ACTGAGATAGGCAATCCAAGTT 57.148 40.909 0.00 0.00 34.90 2.66
100 101 5.744300 GCATACTGAGATAGGCAATCCAAGT 60.744 44.000 0.00 7.93 35.78 3.16
101 102 4.694509 GCATACTGAGATAGGCAATCCAAG 59.305 45.833 0.00 0.00 34.90 3.61
102 103 4.645535 GCATACTGAGATAGGCAATCCAA 58.354 43.478 0.00 0.00 34.90 3.53
103 104 3.306294 CGCATACTGAGATAGGCAATCCA 60.306 47.826 0.00 0.00 34.90 3.41
104 105 3.257393 CGCATACTGAGATAGGCAATCC 58.743 50.000 0.00 0.00 34.90 3.01
105 106 3.919216 ACGCATACTGAGATAGGCAATC 58.081 45.455 0.00 0.00 31.31 2.67
106 107 3.321968 TGACGCATACTGAGATAGGCAAT 59.678 43.478 0.00 0.00 31.31 3.56
107 108 2.693074 TGACGCATACTGAGATAGGCAA 59.307 45.455 0.00 0.00 31.31 4.52
108 109 2.294512 CTGACGCATACTGAGATAGGCA 59.705 50.000 0.00 0.00 31.31 4.75
109 110 2.352225 CCTGACGCATACTGAGATAGGC 60.352 54.545 0.00 0.00 0.00 3.93
110 111 3.149981 TCCTGACGCATACTGAGATAGG 58.850 50.000 0.00 0.00 0.00 2.57
111 112 4.068599 TCTCCTGACGCATACTGAGATAG 58.931 47.826 0.00 0.00 0.00 2.08
112 113 4.086706 TCTCCTGACGCATACTGAGATA 57.913 45.455 0.00 0.00 0.00 1.98
113 114 2.937519 TCTCCTGACGCATACTGAGAT 58.062 47.619 0.00 0.00 0.00 2.75
114 115 2.420058 TCTCCTGACGCATACTGAGA 57.580 50.000 0.00 0.00 0.00 3.27
115 116 2.030363 GGATCTCCTGACGCATACTGAG 60.030 54.545 0.00 0.00 0.00 3.35
116 117 1.957177 GGATCTCCTGACGCATACTGA 59.043 52.381 0.00 0.00 0.00 3.41
117 118 1.335415 CGGATCTCCTGACGCATACTG 60.335 57.143 0.00 0.00 0.00 2.74
118 119 0.955178 CGGATCTCCTGACGCATACT 59.045 55.000 0.00 0.00 0.00 2.12
119 120 0.952280 TCGGATCTCCTGACGCATAC 59.048 55.000 0.00 0.00 0.00 2.39
120 121 1.202770 TCTCGGATCTCCTGACGCATA 60.203 52.381 0.00 0.00 0.00 3.14
121 122 0.466372 TCTCGGATCTCCTGACGCAT 60.466 55.000 0.00 0.00 0.00 4.73
122 123 1.077716 TCTCGGATCTCCTGACGCA 60.078 57.895 0.00 0.00 0.00 5.24
123 124 1.357334 GTCTCGGATCTCCTGACGC 59.643 63.158 0.00 0.00 31.38 5.19
124 125 1.448922 GGGTCTCGGATCTCCTGACG 61.449 65.000 10.82 0.00 37.73 4.35
125 126 0.395862 TGGGTCTCGGATCTCCTGAC 60.396 60.000 9.40 9.40 36.84 3.51
126 127 0.395862 GTGGGTCTCGGATCTCCTGA 60.396 60.000 0.00 0.00 0.00 3.86
127 128 0.684479 TGTGGGTCTCGGATCTCCTG 60.684 60.000 0.00 0.00 0.00 3.86
128 129 0.396417 CTGTGGGTCTCGGATCTCCT 60.396 60.000 0.00 0.00 0.00 3.69
129 130 1.395826 CCTGTGGGTCTCGGATCTCC 61.396 65.000 0.00 0.00 0.00 3.71
130 131 0.684805 ACCTGTGGGTCTCGGATCTC 60.685 60.000 0.00 0.00 43.38 2.75
131 132 0.972983 CACCTGTGGGTCTCGGATCT 60.973 60.000 0.00 0.00 45.41 2.75
132 133 1.517832 CACCTGTGGGTCTCGGATC 59.482 63.158 0.00 0.00 45.41 3.36
133 134 2.660064 GCACCTGTGGGTCTCGGAT 61.660 63.158 0.00 0.00 45.41 4.18
134 135 3.311110 GCACCTGTGGGTCTCGGA 61.311 66.667 0.00 0.00 45.41 4.55
135 136 2.859273 GATGCACCTGTGGGTCTCGG 62.859 65.000 0.00 0.00 45.41 4.63
136 137 1.448540 GATGCACCTGTGGGTCTCG 60.449 63.158 0.00 0.00 45.41 4.04
137 138 0.254178 ATGATGCACCTGTGGGTCTC 59.746 55.000 0.00 0.00 45.41 3.36
138 139 0.254178 GATGATGCACCTGTGGGTCT 59.746 55.000 0.00 0.00 45.41 3.85
139 140 0.035152 TGATGATGCACCTGTGGGTC 60.035 55.000 0.00 0.00 45.41 4.46
141 142 0.813184 GTTGATGATGCACCTGTGGG 59.187 55.000 0.00 0.00 38.88 4.61
142 143 1.471287 CAGTTGATGATGCACCTGTGG 59.529 52.381 0.00 0.00 0.00 4.17
143 144 1.135489 GCAGTTGATGATGCACCTGTG 60.135 52.381 0.00 0.00 42.11 3.66
144 145 1.171308 GCAGTTGATGATGCACCTGT 58.829 50.000 0.00 0.00 42.11 4.00
145 146 1.132453 CTGCAGTTGATGATGCACCTG 59.868 52.381 5.25 0.00 46.97 4.00
146 147 1.003928 TCTGCAGTTGATGATGCACCT 59.996 47.619 14.67 0.00 46.97 4.00
147 148 1.456296 TCTGCAGTTGATGATGCACC 58.544 50.000 14.67 0.00 46.97 5.01
148 149 3.189910 TCTTTCTGCAGTTGATGATGCAC 59.810 43.478 14.67 0.00 46.97 4.57
150 151 4.335874 AGATCTTTCTGCAGTTGATGATGC 59.664 41.667 14.67 4.61 42.86 3.91
151 152 5.811588 CAGATCTTTCTGCAGTTGATGATG 58.188 41.667 14.67 11.81 42.79 3.07
164 165 4.840716 AGGTGCTCAATCAGATCTTTCT 57.159 40.909 0.00 0.00 0.00 2.52
165 166 5.469421 CCATAGGTGCTCAATCAGATCTTTC 59.531 44.000 0.00 0.00 0.00 2.62
166 167 5.131642 TCCATAGGTGCTCAATCAGATCTTT 59.868 40.000 0.00 0.00 0.00 2.52
167 168 4.657504 TCCATAGGTGCTCAATCAGATCTT 59.342 41.667 0.00 0.00 0.00 2.40
168 169 4.229639 TCCATAGGTGCTCAATCAGATCT 58.770 43.478 0.00 0.00 0.00 2.75
169 170 4.282957 TCTCCATAGGTGCTCAATCAGATC 59.717 45.833 0.00 0.00 0.00 2.75
170 171 4.040217 GTCTCCATAGGTGCTCAATCAGAT 59.960 45.833 0.00 0.00 0.00 2.90
171 172 3.386078 GTCTCCATAGGTGCTCAATCAGA 59.614 47.826 0.00 0.00 0.00 3.27
172 173 3.387374 AGTCTCCATAGGTGCTCAATCAG 59.613 47.826 0.00 0.00 0.00 2.90
173 174 3.378512 AGTCTCCATAGGTGCTCAATCA 58.621 45.455 0.00 0.00 0.00 2.57
174 175 3.386078 TGAGTCTCCATAGGTGCTCAATC 59.614 47.826 0.00 0.00 31.77 2.67
175 176 3.378512 TGAGTCTCCATAGGTGCTCAAT 58.621 45.455 0.00 0.00 31.77 2.57
176 177 2.820178 TGAGTCTCCATAGGTGCTCAA 58.180 47.619 0.00 0.00 31.77 3.02
177 178 2.532250 TGAGTCTCCATAGGTGCTCA 57.468 50.000 0.00 0.00 32.01 4.26
178 179 2.102252 CCTTGAGTCTCCATAGGTGCTC 59.898 54.545 0.00 0.00 0.00 4.26
179 180 2.114616 CCTTGAGTCTCCATAGGTGCT 58.885 52.381 0.00 0.00 0.00 4.40
180 181 1.139853 CCCTTGAGTCTCCATAGGTGC 59.860 57.143 0.00 0.00 0.00 5.01
181 182 1.765314 CCCCTTGAGTCTCCATAGGTG 59.235 57.143 0.00 0.00 0.00 4.00
182 183 1.344496 CCCCCTTGAGTCTCCATAGGT 60.344 57.143 0.00 0.00 0.00 3.08
183 184 1.062121 TCCCCCTTGAGTCTCCATAGG 60.062 57.143 0.00 1.97 0.00 2.57
184 185 2.043227 GTCCCCCTTGAGTCTCCATAG 58.957 57.143 0.00 0.00 0.00 2.23
185 186 1.688311 CGTCCCCCTTGAGTCTCCATA 60.688 57.143 0.00 0.00 0.00 2.74
186 187 0.978146 CGTCCCCCTTGAGTCTCCAT 60.978 60.000 0.00 0.00 0.00 3.41
187 188 1.609501 CGTCCCCCTTGAGTCTCCA 60.610 63.158 0.00 0.00 0.00 3.86
188 189 3.020237 GCGTCCCCCTTGAGTCTCC 62.020 68.421 0.00 0.00 0.00 3.71
189 190 2.579738 GCGTCCCCCTTGAGTCTC 59.420 66.667 0.00 0.00 0.00 3.36
190 191 3.003763 GGCGTCCCCCTTGAGTCT 61.004 66.667 0.00 0.00 0.00 3.24
191 192 4.452733 CGGCGTCCCCCTTGAGTC 62.453 72.222 0.00 0.00 0.00 3.36
193 194 4.760047 CACGGCGTCCCCCTTGAG 62.760 72.222 10.85 0.00 0.00 3.02
199 200 3.599285 TTCATCACACGGCGTCCCC 62.599 63.158 10.85 0.00 0.00 4.81
200 201 1.024579 ATTTCATCACACGGCGTCCC 61.025 55.000 10.85 0.00 0.00 4.46
201 202 1.326548 GTATTTCATCACACGGCGTCC 59.673 52.381 10.85 0.00 0.00 4.79
202 203 1.006391 CGTATTTCATCACACGGCGTC 60.006 52.381 10.85 0.00 0.00 5.19
203 204 0.996462 CGTATTTCATCACACGGCGT 59.004 50.000 6.77 6.77 0.00 5.68
204 205 1.255342 CTCGTATTTCATCACACGGCG 59.745 52.381 4.80 4.80 35.21 6.46
205 206 2.268298 ACTCGTATTTCATCACACGGC 58.732 47.619 0.00 0.00 35.21 5.68
206 207 4.921470 AAACTCGTATTTCATCACACGG 57.079 40.909 0.00 0.00 35.21 4.94
207 208 8.874745 AATAAAAACTCGTATTTCATCACACG 57.125 30.769 0.00 0.00 35.78 4.49
321 322 9.885743 GCGTTCAATTATCAACACAATTATTTC 57.114 29.630 0.00 0.00 0.00 2.17
322 323 8.868916 GGCGTTCAATTATCAACACAATTATTT 58.131 29.630 0.00 0.00 0.00 1.40
323 324 7.219917 CGGCGTTCAATTATCAACACAATTATT 59.780 33.333 0.00 0.00 0.00 1.40
324 325 6.690957 CGGCGTTCAATTATCAACACAATTAT 59.309 34.615 0.00 0.00 0.00 1.28
325 326 6.024664 CGGCGTTCAATTATCAACACAATTA 58.975 36.000 0.00 0.00 0.00 1.40
326 327 4.856487 CGGCGTTCAATTATCAACACAATT 59.144 37.500 0.00 0.00 0.00 2.32
327 328 4.155099 TCGGCGTTCAATTATCAACACAAT 59.845 37.500 6.85 0.00 0.00 2.71
328 329 3.498777 TCGGCGTTCAATTATCAACACAA 59.501 39.130 6.85 0.00 0.00 3.33
329 330 3.067833 TCGGCGTTCAATTATCAACACA 58.932 40.909 6.85 0.00 0.00 3.72
330 331 3.369756 TCTCGGCGTTCAATTATCAACAC 59.630 43.478 6.85 0.00 0.00 3.32
331 332 3.369756 GTCTCGGCGTTCAATTATCAACA 59.630 43.478 6.85 0.00 0.00 3.33
332 333 3.369756 TGTCTCGGCGTTCAATTATCAAC 59.630 43.478 6.85 0.00 0.00 3.18
333 334 3.369756 GTGTCTCGGCGTTCAATTATCAA 59.630 43.478 6.85 0.00 0.00 2.57
334 335 2.927477 GTGTCTCGGCGTTCAATTATCA 59.073 45.455 6.85 0.00 0.00 2.15
335 336 2.034842 CGTGTCTCGGCGTTCAATTATC 60.035 50.000 6.85 0.00 35.71 1.75
336 337 1.924524 CGTGTCTCGGCGTTCAATTAT 59.075 47.619 6.85 0.00 35.71 1.28
337 338 1.342555 CGTGTCTCGGCGTTCAATTA 58.657 50.000 6.85 0.00 35.71 1.40
338 339 2.150424 CGTGTCTCGGCGTTCAATT 58.850 52.632 6.85 0.00 35.71 2.32
339 340 3.856508 CGTGTCTCGGCGTTCAAT 58.143 55.556 6.85 0.00 35.71 2.57
348 349 2.355363 TGGTTTCGCCGTGTCTCG 60.355 61.111 0.00 0.00 41.21 4.04
349 350 2.654912 CGTGGTTTCGCCGTGTCTC 61.655 63.158 0.00 0.00 41.21 3.36
350 351 2.660552 CGTGGTTTCGCCGTGTCT 60.661 61.111 0.00 0.00 41.21 3.41
358 359 1.003851 ACATATTCGGCGTGGTTTCG 58.996 50.000 6.85 0.00 0.00 3.46
359 360 1.531058 GCACATATTCGGCGTGGTTTC 60.531 52.381 6.85 0.00 0.00 2.78
360 361 0.450184 GCACATATTCGGCGTGGTTT 59.550 50.000 6.85 0.00 0.00 3.27
361 362 1.373590 GGCACATATTCGGCGTGGTT 61.374 55.000 6.85 0.00 0.00 3.67
362 363 1.817941 GGCACATATTCGGCGTGGT 60.818 57.895 6.85 0.00 0.00 4.16
363 364 0.249699 TAGGCACATATTCGGCGTGG 60.250 55.000 6.85 0.00 0.00 4.94
364 365 1.795768 ATAGGCACATATTCGGCGTG 58.204 50.000 6.85 0.00 0.00 5.34
365 366 2.037251 AGAATAGGCACATATTCGGCGT 59.963 45.455 6.85 0.00 43.79 5.68
366 367 2.668457 GAGAATAGGCACATATTCGGCG 59.332 50.000 0.00 0.00 43.79 6.46
367 368 2.668457 CGAGAATAGGCACATATTCGGC 59.332 50.000 8.83 5.56 43.79 5.54
368 369 2.668457 GCGAGAATAGGCACATATTCGG 59.332 50.000 8.83 6.96 43.79 4.30
369 370 2.668457 GGCGAGAATAGGCACATATTCG 59.332 50.000 8.83 1.85 43.79 3.34
370 371 3.003480 GGGCGAGAATAGGCACATATTC 58.997 50.000 6.89 6.89 40.83 1.75
371 372 2.371841 TGGGCGAGAATAGGCACATATT 59.628 45.455 0.00 0.00 37.72 1.28
372 373 1.977854 TGGGCGAGAATAGGCACATAT 59.022 47.619 0.00 0.00 37.72 1.78
373 374 1.419381 TGGGCGAGAATAGGCACATA 58.581 50.000 0.00 0.00 37.72 2.29
374 375 2.220953 TGGGCGAGAATAGGCACAT 58.779 52.632 0.00 0.00 37.72 3.21
375 376 3.720494 TGGGCGAGAATAGGCACA 58.280 55.556 0.00 0.00 40.96 4.57
376 377 2.028112 TCATATGGGCGAGAATAGGCAC 60.028 50.000 2.13 0.00 38.24 5.01
377 378 2.234661 CTCATATGGGCGAGAATAGGCA 59.765 50.000 2.13 0.00 38.24 4.75
378 379 2.898705 CTCATATGGGCGAGAATAGGC 58.101 52.381 2.13 0.00 34.95 3.93
379 380 2.419297 GGCTCATATGGGCGAGAATAGG 60.419 54.545 21.12 0.00 0.00 2.57
380 381 2.419297 GGGCTCATATGGGCGAGAATAG 60.419 54.545 21.12 0.00 0.00 1.73
381 382 1.555075 GGGCTCATATGGGCGAGAATA 59.445 52.381 21.12 0.00 0.00 1.75
382 383 0.326264 GGGCTCATATGGGCGAGAAT 59.674 55.000 21.12 0.00 0.00 2.40
383 384 0.764369 AGGGCTCATATGGGCGAGAA 60.764 55.000 21.12 0.00 0.00 2.87
384 385 0.764369 AAGGGCTCATATGGGCGAGA 60.764 55.000 21.12 0.00 0.00 4.04
385 386 0.321122 GAAGGGCTCATATGGGCGAG 60.321 60.000 21.12 3.15 0.00 5.03
386 387 1.053835 TGAAGGGCTCATATGGGCGA 61.054 55.000 21.12 0.00 0.00 5.54
387 388 0.037303 ATGAAGGGCTCATATGGGCG 59.963 55.000 21.12 2.62 43.32 6.13
388 389 2.165998 GAATGAAGGGCTCATATGGGC 58.834 52.381 19.86 19.86 44.43 5.36
389 390 2.430465 CGAATGAAGGGCTCATATGGG 58.570 52.381 2.13 0.00 44.43 4.00
390 391 1.808945 GCGAATGAAGGGCTCATATGG 59.191 52.381 2.13 0.00 44.43 2.74
391 392 1.808945 GGCGAATGAAGGGCTCATATG 59.191 52.381 0.00 0.00 44.43 1.78
392 393 1.609061 CGGCGAATGAAGGGCTCATAT 60.609 52.381 0.00 0.00 44.43 1.78
393 394 0.249868 CGGCGAATGAAGGGCTCATA 60.250 55.000 0.00 0.00 44.43 2.15
395 396 2.125147 CGGCGAATGAAGGGCTCA 60.125 61.111 0.00 0.00 38.81 4.26
396 397 1.024579 TTTCGGCGAATGAAGGGCTC 61.025 55.000 24.33 0.00 0.00 4.70
397 398 0.394352 ATTTCGGCGAATGAAGGGCT 60.394 50.000 24.33 0.00 0.00 5.19
398 399 0.455815 AATTTCGGCGAATGAAGGGC 59.544 50.000 24.33 0.00 0.00 5.19
399 400 1.202290 CCAATTTCGGCGAATGAAGGG 60.202 52.381 24.33 15.98 0.00 3.95
400 401 1.742831 TCCAATTTCGGCGAATGAAGG 59.257 47.619 24.33 20.85 0.00 3.46
401 402 2.420022 AGTCCAATTTCGGCGAATGAAG 59.580 45.455 24.33 12.89 0.00 3.02
402 403 2.161410 CAGTCCAATTTCGGCGAATGAA 59.839 45.455 24.33 9.26 0.00 2.57
403 404 1.737236 CAGTCCAATTTCGGCGAATGA 59.263 47.619 24.33 10.09 0.00 2.57
404 405 1.795162 GCAGTCCAATTTCGGCGAATG 60.795 52.381 24.33 18.83 0.00 2.67
405 406 0.451783 GCAGTCCAATTTCGGCGAAT 59.548 50.000 24.33 6.53 0.00 3.34
406 407 0.886938 TGCAGTCCAATTTCGGCGAA 60.887 50.000 19.83 19.83 0.00 4.70
407 408 0.886938 TTGCAGTCCAATTTCGGCGA 60.887 50.000 4.99 4.99 0.00 5.54
408 409 0.039617 TTTGCAGTCCAATTTCGGCG 60.040 50.000 0.00 0.00 32.49 6.46
409 410 1.000274 ACTTTGCAGTCCAATTTCGGC 60.000 47.619 0.00 0.00 32.49 5.54
410 411 2.607771 CCACTTTGCAGTCCAATTTCGG 60.608 50.000 0.00 0.00 32.49 4.30
411 412 2.607771 CCCACTTTGCAGTCCAATTTCG 60.608 50.000 0.00 0.00 32.49 3.46
412 413 2.867647 GCCCACTTTGCAGTCCAATTTC 60.868 50.000 0.00 0.00 32.49 2.17
413 414 1.070601 GCCCACTTTGCAGTCCAATTT 59.929 47.619 0.00 0.00 32.49 1.82
414 415 0.681175 GCCCACTTTGCAGTCCAATT 59.319 50.000 0.00 0.00 32.49 2.32
415 416 1.187567 GGCCCACTTTGCAGTCCAAT 61.188 55.000 0.00 0.00 32.49 3.16
416 417 1.832167 GGCCCACTTTGCAGTCCAA 60.832 57.895 0.00 0.00 0.00 3.53
417 418 2.203480 GGCCCACTTTGCAGTCCA 60.203 61.111 0.00 0.00 0.00 4.02
418 419 1.187567 ATTGGCCCACTTTGCAGTCC 61.188 55.000 0.00 0.00 0.00 3.85
419 420 0.681175 AATTGGCCCACTTTGCAGTC 59.319 50.000 0.00 0.00 0.00 3.51
420 421 1.070601 GAAATTGGCCCACTTTGCAGT 59.929 47.619 3.51 0.00 0.00 4.40
421 422 1.799544 GAAATTGGCCCACTTTGCAG 58.200 50.000 3.51 0.00 0.00 4.41
422 423 0.033228 CGAAATTGGCCCACTTTGCA 59.967 50.000 3.51 0.00 0.00 4.08
423 424 0.316841 TCGAAATTGGCCCACTTTGC 59.683 50.000 3.51 0.00 0.00 3.68
424 425 1.665735 CGTCGAAATTGGCCCACTTTG 60.666 52.381 3.51 0.00 0.00 2.77
425 426 0.596082 CGTCGAAATTGGCCCACTTT 59.404 50.000 0.00 0.00 0.00 2.66
426 427 1.862602 GCGTCGAAATTGGCCCACTT 61.863 55.000 0.00 0.00 0.00 3.16
427 428 2.332654 GCGTCGAAATTGGCCCACT 61.333 57.895 0.00 0.00 0.00 4.00
428 429 2.178273 GCGTCGAAATTGGCCCAC 59.822 61.111 0.00 0.00 0.00 4.61
429 430 3.059386 GGCGTCGAAATTGGCCCA 61.059 61.111 0.00 0.00 39.67 5.36
431 432 4.174129 CGGGCGTCGAAATTGGCC 62.174 66.667 0.00 0.00 44.82 5.36
432 433 3.122323 TCGGGCGTCGAAATTGGC 61.122 61.111 0.00 0.00 45.86 4.52
439 440 4.093952 GTCGTTCTCGGGCGTCGA 62.094 66.667 0.00 3.32 46.77 4.20
441 442 4.093952 TCGTCGTTCTCGGGCGTC 62.094 66.667 0.00 0.00 37.24 5.19
442 443 4.395583 GTCGTCGTTCTCGGGCGT 62.396 66.667 0.00 0.00 37.24 5.68
443 444 4.099170 AGTCGTCGTTCTCGGGCG 62.099 66.667 0.00 0.00 37.69 6.13
444 445 2.504244 CAGTCGTCGTTCTCGGGC 60.504 66.667 0.00 0.00 37.69 6.13
445 446 2.178521 CCAGTCGTCGTTCTCGGG 59.821 66.667 0.00 0.00 37.69 5.14
446 447 2.178521 CCCAGTCGTCGTTCTCGG 59.821 66.667 0.00 0.00 37.69 4.63
447 448 2.504244 GCCCAGTCGTCGTTCTCG 60.504 66.667 0.00 0.00 38.55 4.04
448 449 1.915614 TACGCCCAGTCGTCGTTCTC 61.916 60.000 0.00 0.00 43.15 2.87
449 450 1.518056 TTACGCCCAGTCGTCGTTCT 61.518 55.000 0.00 0.00 43.15 3.01
450 451 0.664166 TTTACGCCCAGTCGTCGTTC 60.664 55.000 0.00 0.00 43.15 3.95
451 452 0.249405 TTTTACGCCCAGTCGTCGTT 60.249 50.000 0.00 0.00 43.15 3.85
452 453 0.940991 GTTTTACGCCCAGTCGTCGT 60.941 55.000 0.00 0.00 43.15 4.34
453 454 1.620413 GGTTTTACGCCCAGTCGTCG 61.620 60.000 0.00 0.00 43.15 5.12
454 455 1.620413 CGGTTTTACGCCCAGTCGTC 61.620 60.000 0.00 0.00 43.15 4.20
455 456 1.665599 CGGTTTTACGCCCAGTCGT 60.666 57.895 0.00 0.00 45.49 4.34
456 457 3.161817 CGGTTTTACGCCCAGTCG 58.838 61.111 0.00 0.00 0.00 4.18
464 465 3.436924 GCTGGGGGCGGTTTTACG 61.437 66.667 0.00 0.00 0.00 3.18
474 475 2.958578 AATACAATCGGCGCTGGGGG 62.959 60.000 17.88 8.36 0.00 5.40
475 476 1.525995 AATACAATCGGCGCTGGGG 60.526 57.895 17.88 8.74 0.00 4.96
476 477 1.095228 ACAATACAATCGGCGCTGGG 61.095 55.000 17.88 9.12 0.00 4.45
477 478 0.304705 GACAATACAATCGGCGCTGG 59.695 55.000 17.88 4.31 0.00 4.85
478 479 0.043053 CGACAATACAATCGGCGCTG 60.043 55.000 10.86 10.86 34.67 5.18
479 480 2.297625 CGACAATACAATCGGCGCT 58.702 52.632 7.64 0.00 34.67 5.92
480 481 4.872476 CGACAATACAATCGGCGC 57.128 55.556 0.00 0.00 34.67 6.53
839 840 4.641645 CTCCAGCCGTTGCCACCA 62.642 66.667 0.00 0.00 38.69 4.17
840 841 4.643387 ACTCCAGCCGTTGCCACC 62.643 66.667 0.00 0.00 38.69 4.61
841 842 3.050275 GACTCCAGCCGTTGCCAC 61.050 66.667 0.00 0.00 38.69 5.01
842 843 4.329545 GGACTCCAGCCGTTGCCA 62.330 66.667 0.00 0.00 38.69 4.92
844 845 2.180159 TTAGGGACTCCAGCCGTTGC 62.180 60.000 0.00 0.00 41.75 4.17
845 846 0.391263 GTTAGGGACTCCAGCCGTTG 60.391 60.000 0.00 0.00 41.75 4.10
846 847 0.544595 AGTTAGGGACTCCAGCCGTT 60.545 55.000 0.00 0.00 41.75 4.44
847 848 1.078710 AGTTAGGGACTCCAGCCGT 59.921 57.895 0.00 0.00 41.75 5.68
848 849 0.970937 TCAGTTAGGGACTCCAGCCG 60.971 60.000 0.00 0.00 41.75 5.52
849 850 0.537653 GTCAGTTAGGGACTCCAGCC 59.462 60.000 0.00 0.00 41.75 4.85
850 851 0.173708 CGTCAGTTAGGGACTCCAGC 59.826 60.000 0.00 0.00 41.75 4.85
851 852 0.173708 GCGTCAGTTAGGGACTCCAG 59.826 60.000 0.00 0.00 41.75 3.86
852 853 0.251653 AGCGTCAGTTAGGGACTCCA 60.252 55.000 0.00 0.00 41.75 3.86
853 854 0.456628 GAGCGTCAGTTAGGGACTCC 59.543 60.000 0.00 0.00 41.75 3.85
854 855 1.174783 TGAGCGTCAGTTAGGGACTC 58.825 55.000 0.00 0.00 41.75 3.36
855 856 1.853963 ATGAGCGTCAGTTAGGGACT 58.146 50.000 0.00 0.00 46.37 3.85
856 857 2.688958 ACTATGAGCGTCAGTTAGGGAC 59.311 50.000 0.00 0.00 0.00 4.46
857 858 3.014304 ACTATGAGCGTCAGTTAGGGA 57.986 47.619 0.00 0.00 0.00 4.20
858 859 3.802948 AACTATGAGCGTCAGTTAGGG 57.197 47.619 0.00 0.00 30.89 3.53
859 860 5.244785 TGTAACTATGAGCGTCAGTTAGG 57.755 43.478 4.26 0.00 35.90 2.69
860 861 6.323266 AGTTGTAACTATGAGCGTCAGTTAG 58.677 40.000 0.00 0.31 37.52 2.34
861 862 6.263516 AGTTGTAACTATGAGCGTCAGTTA 57.736 37.500 0.00 0.00 37.52 2.24
862 863 5.135508 AGTTGTAACTATGAGCGTCAGTT 57.864 39.130 0.00 0.00 37.52 3.16
863 864 4.785511 AGTTGTAACTATGAGCGTCAGT 57.214 40.909 0.00 0.00 37.52 3.41
864 865 6.090783 TGTAAGTTGTAACTATGAGCGTCAG 58.909 40.000 0.00 0.00 38.57 3.51
865 866 6.016213 TGTAAGTTGTAACTATGAGCGTCA 57.984 37.500 0.00 0.00 38.57 4.35
866 867 6.034683 CCTTGTAAGTTGTAACTATGAGCGTC 59.965 42.308 0.00 0.00 38.57 5.19
867 868 5.867716 CCTTGTAAGTTGTAACTATGAGCGT 59.132 40.000 0.00 0.00 38.57 5.07
868 869 5.220416 GCCTTGTAAGTTGTAACTATGAGCG 60.220 44.000 0.00 0.00 38.57 5.03
869 870 5.875359 AGCCTTGTAAGTTGTAACTATGAGC 59.125 40.000 0.00 0.00 38.57 4.26
870 871 7.324178 AGAGCCTTGTAAGTTGTAACTATGAG 58.676 38.462 0.00 0.00 38.57 2.90
871 872 7.241042 AGAGCCTTGTAAGTTGTAACTATGA 57.759 36.000 0.00 0.00 38.57 2.15
872 873 6.253727 CGAGAGCCTTGTAAGTTGTAACTATG 59.746 42.308 0.00 0.00 38.57 2.23
873 874 6.152323 TCGAGAGCCTTGTAAGTTGTAACTAT 59.848 38.462 0.00 0.00 38.57 2.12
874 875 5.474532 TCGAGAGCCTTGTAAGTTGTAACTA 59.525 40.000 0.00 0.00 38.57 2.24
875 876 4.280174 TCGAGAGCCTTGTAAGTTGTAACT 59.720 41.667 0.00 0.00 42.04 2.24
876 877 4.553323 TCGAGAGCCTTGTAAGTTGTAAC 58.447 43.478 0.00 0.00 0.00 2.50
877 878 4.859304 TCGAGAGCCTTGTAAGTTGTAA 57.141 40.909 0.00 0.00 0.00 2.41
878 879 4.859304 TTCGAGAGCCTTGTAAGTTGTA 57.141 40.909 0.00 0.00 0.00 2.41
879 880 3.746045 TTCGAGAGCCTTGTAAGTTGT 57.254 42.857 0.00 0.00 0.00 3.32
880 881 5.418310 TTTTTCGAGAGCCTTGTAAGTTG 57.582 39.130 0.00 0.00 0.00 3.16
899 900 8.523523 AAAGCAACTAGTTAACAAACGTTTTT 57.476 26.923 11.66 11.47 0.00 1.94
900 901 7.007636 CGAAAGCAACTAGTTAACAAACGTTTT 59.992 33.333 11.66 4.75 0.00 2.43
901 902 6.466730 CGAAAGCAACTAGTTAACAAACGTTT 59.533 34.615 7.96 7.96 0.00 3.60
902 903 5.961263 CGAAAGCAACTAGTTAACAAACGTT 59.039 36.000 8.04 0.00 0.00 3.99
903 904 5.495502 CGAAAGCAACTAGTTAACAAACGT 58.504 37.500 8.04 0.00 0.00 3.99
904 905 4.901881 CCGAAAGCAACTAGTTAACAAACG 59.098 41.667 8.04 9.88 0.00 3.60
905 906 5.813717 ACCGAAAGCAACTAGTTAACAAAC 58.186 37.500 8.04 0.00 0.00 2.93
906 907 6.439675 AACCGAAAGCAACTAGTTAACAAA 57.560 33.333 8.04 0.00 0.00 2.83
907 908 6.439675 AAACCGAAAGCAACTAGTTAACAA 57.560 33.333 8.04 0.00 0.00 2.83
908 909 6.439675 AAAACCGAAAGCAACTAGTTAACA 57.560 33.333 8.04 0.00 0.00 2.41
909 910 6.415867 GGAAAAACCGAAAGCAACTAGTTAAC 59.584 38.462 8.04 3.72 0.00 2.01
910 911 6.497437 GGAAAAACCGAAAGCAACTAGTTAA 58.503 36.000 8.04 0.00 0.00 2.01
911 912 6.063640 GGAAAAACCGAAAGCAACTAGTTA 57.936 37.500 8.04 0.00 0.00 2.24
912 913 4.928601 GGAAAAACCGAAAGCAACTAGTT 58.071 39.130 1.12 1.12 0.00 2.24
913 914 4.563337 GGAAAAACCGAAAGCAACTAGT 57.437 40.909 0.00 0.00 0.00 2.57
936 937 1.226746 GCAGCACTTCCGTAACAACT 58.773 50.000 0.00 0.00 0.00 3.16
967 968 2.045926 CTTCTGTTCCCCGGCCAG 60.046 66.667 2.24 0.00 0.00 4.85
974 975 2.245438 CTCGGAGCCCTTCTGTTCCC 62.245 65.000 0.00 0.00 33.64 3.97
983 984 0.109342 CATTATTGCCTCGGAGCCCT 59.891 55.000 0.00 0.00 0.00 5.19
1019 1035 2.814183 GAACACCATCGTCGCCGTCT 62.814 60.000 0.00 0.00 35.01 4.18
1161 1177 1.003051 GGCAGGTAGGAGGAAGGGA 59.997 63.158 0.00 0.00 0.00 4.20
1274 1290 3.838244 TTGAATATTGAGACGAGGGGG 57.162 47.619 0.00 0.00 0.00 5.40
1288 1304 5.345702 CGGAAAGGAGTCGTGTATTGAATA 58.654 41.667 0.00 0.00 0.00 1.75
1289 1305 4.181578 CGGAAAGGAGTCGTGTATTGAAT 58.818 43.478 0.00 0.00 0.00 2.57
1290 1306 3.581755 CGGAAAGGAGTCGTGTATTGAA 58.418 45.455 0.00 0.00 0.00 2.69
1291 1307 2.094390 CCGGAAAGGAGTCGTGTATTGA 60.094 50.000 0.00 0.00 45.00 2.57
1292 1308 2.268298 CCGGAAAGGAGTCGTGTATTG 58.732 52.381 0.00 0.00 45.00 1.90
1293 1309 1.897802 ACCGGAAAGGAGTCGTGTATT 59.102 47.619 9.46 0.00 45.00 1.89
1294 1310 1.553706 ACCGGAAAGGAGTCGTGTAT 58.446 50.000 9.46 0.00 45.00 2.29
1295 1311 1.331214 AACCGGAAAGGAGTCGTGTA 58.669 50.000 9.46 0.00 45.00 2.90
1301 1317 4.286291 AGATTACTGAAACCGGAAAGGAGT 59.714 41.667 9.46 5.78 45.00 3.85
1396 1413 1.674057 CCTCCACCTCTTTGCTCGT 59.326 57.895 0.00 0.00 0.00 4.18
1417 1434 0.179222 GCGTTCGCAAAGTAAGCCTC 60.179 55.000 12.33 0.00 0.00 4.70
1618 1635 5.049167 CAGAGAATGATCGGAAGGAAAGAG 58.951 45.833 0.00 0.00 0.00 2.85
1663 1680 1.749063 TGTGTACTGGATGCTACGGAG 59.251 52.381 0.00 0.00 0.00 4.63
1664 1681 1.475280 GTGTGTACTGGATGCTACGGA 59.525 52.381 0.00 0.00 0.00 4.69
1665 1682 1.470979 GGTGTGTACTGGATGCTACGG 60.471 57.143 0.00 0.00 0.00 4.02
1703 1733 9.173021 TCACAATTAAGAAATCGGTATGAATGT 57.827 29.630 0.00 0.00 0.00 2.71
1731 1761 8.284693 GCAACTTCTCCAAATAAAAAGTACGTA 58.715 33.333 0.00 0.00 30.37 3.57
1732 1762 7.012989 AGCAACTTCTCCAAATAAAAAGTACGT 59.987 33.333 0.00 0.00 30.37 3.57
1733 1763 7.323656 CAGCAACTTCTCCAAATAAAAAGTACG 59.676 37.037 0.00 0.00 30.37 3.67
1734 1764 7.114953 GCAGCAACTTCTCCAAATAAAAAGTAC 59.885 37.037 0.00 0.00 30.37 2.73
1799 1829 5.242434 ACAGTTGACGGCATCTTATACAAA 58.758 37.500 0.00 0.00 0.00 2.83
1805 1835 4.002906 AGAAACAGTTGACGGCATCTTA 57.997 40.909 0.00 0.00 0.00 2.10
1806 1836 2.851195 AGAAACAGTTGACGGCATCTT 58.149 42.857 0.00 0.00 0.00 2.40
1813 1843 6.408858 AACATGCTATAGAAACAGTTGACG 57.591 37.500 3.21 0.00 0.00 4.35
1818 1848 8.947115 GGACTAAAAACATGCTATAGAAACAGT 58.053 33.333 3.21 0.00 0.00 3.55
1843 1873 4.041740 TCGGAAGTCTTATCACATTCGG 57.958 45.455 0.00 0.00 0.00 4.30
1844 1874 5.498700 CGTTTCGGAAGTCTTATCACATTCG 60.499 44.000 0.00 0.00 0.00 3.34
1852 1882 5.598769 CCCTTATCGTTTCGGAAGTCTTAT 58.401 41.667 0.00 0.00 0.00 1.73
1860 1890 0.614294 TTGGCCCTTATCGTTTCGGA 59.386 50.000 0.00 0.00 0.00 4.55
1861 1891 1.131693 GTTTGGCCCTTATCGTTTCGG 59.868 52.381 0.00 0.00 0.00 4.30
1863 1893 1.808343 ACGTTTGGCCCTTATCGTTTC 59.192 47.619 0.00 0.00 0.00 2.78
1878 1908 3.489398 CGGCTAGAGATGCTCTTACGTTT 60.489 47.826 1.88 0.00 41.50 3.60
1884 1914 1.745264 GGCGGCTAGAGATGCTCTT 59.255 57.895 0.00 0.00 41.50 2.85
1887 1917 0.470080 TAAGGGCGGCTAGAGATGCT 60.470 55.000 9.56 0.00 0.00 3.79
1888 1918 0.037790 CTAAGGGCGGCTAGAGATGC 60.038 60.000 9.56 0.00 0.00 3.91
1889 1919 0.605589 CCTAAGGGCGGCTAGAGATG 59.394 60.000 9.56 0.00 0.00 2.90
1890 1920 3.059287 CCTAAGGGCGGCTAGAGAT 57.941 57.895 9.56 0.00 0.00 2.75
1891 1921 4.601042 CCTAAGGGCGGCTAGAGA 57.399 61.111 9.56 0.00 0.00 3.10
1901 1931 2.158608 CCTATTCCACAAGGCCTAAGGG 60.159 54.545 5.16 8.07 33.74 3.95
1902 1932 2.777692 TCCTATTCCACAAGGCCTAAGG 59.222 50.000 5.16 8.92 32.55 2.69
1903 1933 3.181450 CCTCCTATTCCACAAGGCCTAAG 60.181 52.174 5.16 4.24 32.55 2.18
1904 1934 2.777692 CCTCCTATTCCACAAGGCCTAA 59.222 50.000 5.16 0.00 32.55 2.69
1905 1935 2.293586 ACCTCCTATTCCACAAGGCCTA 60.294 50.000 5.16 0.00 32.55 3.93
1906 1936 1.216990 CCTCCTATTCCACAAGGCCT 58.783 55.000 0.00 0.00 32.55 5.19
1907 1937 0.919710 ACCTCCTATTCCACAAGGCC 59.080 55.000 0.00 0.00 32.55 5.19
1908 1938 2.019156 GCACCTCCTATTCCACAAGGC 61.019 57.143 0.00 0.00 32.55 4.35
1909 1939 1.561542 AGCACCTCCTATTCCACAAGG 59.438 52.381 0.00 0.00 0.00 3.61
1910 1940 3.356529 AAGCACCTCCTATTCCACAAG 57.643 47.619 0.00 0.00 0.00 3.16
1911 1941 3.199946 CCTAAGCACCTCCTATTCCACAA 59.800 47.826 0.00 0.00 0.00 3.33
1912 1942 2.771943 CCTAAGCACCTCCTATTCCACA 59.228 50.000 0.00 0.00 0.00 4.17
1913 1943 2.104963 CCCTAAGCACCTCCTATTCCAC 59.895 54.545 0.00 0.00 0.00 4.02
1914 1944 2.022428 TCCCTAAGCACCTCCTATTCCA 60.022 50.000 0.00 0.00 0.00 3.53
1915 1945 2.690840 TCCCTAAGCACCTCCTATTCC 58.309 52.381 0.00 0.00 0.00 3.01
1916 1946 4.164413 ACTTTCCCTAAGCACCTCCTATTC 59.836 45.833 0.00 0.00 37.37 1.75
1917 1947 4.080299 CACTTTCCCTAAGCACCTCCTATT 60.080 45.833 0.00 0.00 37.37 1.73
1918 1948 3.456277 CACTTTCCCTAAGCACCTCCTAT 59.544 47.826 0.00 0.00 37.37 2.57
1919 1949 2.838202 CACTTTCCCTAAGCACCTCCTA 59.162 50.000 0.00 0.00 37.37 2.94
1920 1950 1.630878 CACTTTCCCTAAGCACCTCCT 59.369 52.381 0.00 0.00 37.37 3.69
1921 1951 1.950954 GCACTTTCCCTAAGCACCTCC 60.951 57.143 0.00 0.00 37.37 4.30
1922 1952 1.003696 AGCACTTTCCCTAAGCACCTC 59.996 52.381 0.00 0.00 37.37 3.85
1923 1953 1.068121 AGCACTTTCCCTAAGCACCT 58.932 50.000 0.00 0.00 37.37 4.00
1924 1954 1.911057 AAGCACTTTCCCTAAGCACC 58.089 50.000 0.00 0.00 37.37 5.01
1925 1955 4.760204 TCTTTAAGCACTTTCCCTAAGCAC 59.240 41.667 0.00 0.00 37.37 4.40
1926 1956 4.980573 TCTTTAAGCACTTTCCCTAAGCA 58.019 39.130 0.00 0.00 37.37 3.91
1927 1957 5.959618 TTCTTTAAGCACTTTCCCTAAGC 57.040 39.130 0.00 0.00 37.37 3.09
1930 1960 8.799367 GGTTTATTTCTTTAAGCACTTTCCCTA 58.201 33.333 0.00 0.00 0.00 3.53
1931 1961 7.289084 TGGTTTATTTCTTTAAGCACTTTCCCT 59.711 33.333 0.00 0.00 0.00 4.20
1932 1962 7.438564 TGGTTTATTTCTTTAAGCACTTTCCC 58.561 34.615 0.00 0.00 0.00 3.97
1933 1963 8.357402 TCTGGTTTATTTCTTTAAGCACTTTCC 58.643 33.333 0.00 0.00 0.00 3.13
1934 1964 9.181805 GTCTGGTTTATTTCTTTAAGCACTTTC 57.818 33.333 0.00 0.00 0.00 2.62
1935 1965 8.914011 AGTCTGGTTTATTTCTTTAAGCACTTT 58.086 29.630 0.00 0.00 0.00 2.66
1936 1966 8.465273 AGTCTGGTTTATTTCTTTAAGCACTT 57.535 30.769 0.00 0.00 0.00 3.16
1937 1967 8.465273 AAGTCTGGTTTATTTCTTTAAGCACT 57.535 30.769 0.00 0.00 0.00 4.40
1938 1968 9.529325 AAAAGTCTGGTTTATTTCTTTAAGCAC 57.471 29.630 0.00 0.00 0.00 4.40
1963 1993 9.623350 GTATAAATAAACACCGGTGCTTAAAAA 57.377 29.630 34.26 19.81 0.00 1.94
1964 1994 8.790718 TGTATAAATAAACACCGGTGCTTAAAA 58.209 29.630 34.26 20.13 0.00 1.52
1965 1995 8.332996 TGTATAAATAAACACCGGTGCTTAAA 57.667 30.769 34.26 20.45 0.00 1.52
1966 1996 7.066043 CCTGTATAAATAAACACCGGTGCTTAA 59.934 37.037 34.26 17.53 0.00 1.85
1967 1997 6.539464 CCTGTATAAATAAACACCGGTGCTTA 59.461 38.462 34.26 30.62 0.00 3.09
1968 1998 5.355910 CCTGTATAAATAAACACCGGTGCTT 59.644 40.000 34.26 29.48 0.00 3.91
1969 1999 4.879545 CCTGTATAAATAAACACCGGTGCT 59.120 41.667 34.26 20.93 0.00 4.40
1970 2000 4.035909 CCCTGTATAAATAAACACCGGTGC 59.964 45.833 34.26 14.11 0.00 5.01
1971 2001 5.187687 ACCCTGTATAAATAAACACCGGTG 58.812 41.667 32.83 32.83 0.00 4.94
1972 2002 5.440207 ACCCTGTATAAATAAACACCGGT 57.560 39.130 0.00 0.00 0.00 5.28
1973 2003 6.703165 GTCTACCCTGTATAAATAAACACCGG 59.297 42.308 0.00 0.00 0.00 5.28
1974 2004 6.703165 GGTCTACCCTGTATAAATAAACACCG 59.297 42.308 0.00 0.00 0.00 4.94
1992 2022 1.411612 CCTACATGAACCGGGTCTACC 59.588 57.143 22.56 0.00 0.00 3.18
1993 2023 2.361438 CTCCTACATGAACCGGGTCTAC 59.639 54.545 22.56 0.00 0.00 2.59
1994 2024 2.662866 CTCCTACATGAACCGGGTCTA 58.337 52.381 22.56 7.64 0.00 2.59
1995 2025 1.486211 CTCCTACATGAACCGGGTCT 58.514 55.000 22.56 2.40 0.00 3.85
1996 2026 0.464452 CCTCCTACATGAACCGGGTC 59.536 60.000 14.24 14.24 0.00 4.46
1997 2027 0.252558 ACCTCCTACATGAACCGGGT 60.253 55.000 6.32 0.00 0.00 5.28
1998 2028 0.178068 CACCTCCTACATGAACCGGG 59.822 60.000 6.32 0.00 0.00 5.73
1999 2029 1.191535 TCACCTCCTACATGAACCGG 58.808 55.000 0.00 0.00 0.00 5.28
2007 2037 3.517612 GCCCCTTATATCACCTCCTACA 58.482 50.000 0.00 0.00 0.00 2.74
2010 2040 1.149288 TCGCCCCTTATATCACCTCCT 59.851 52.381 0.00 0.00 0.00 3.69
2073 2105 3.517602 AGGCGAAACACCTTTTCAAAAC 58.482 40.909 0.00 0.00 31.87 2.43
2083 2115 2.151202 TCATTTCTGAGGCGAAACACC 58.849 47.619 0.00 0.00 35.88 4.16
2084 2116 3.555518 GTTCATTTCTGAGGCGAAACAC 58.444 45.455 0.00 0.00 35.88 3.32
2093 2126 7.851508 TCTAGTGTTTTTCGTTCATTTCTGAG 58.148 34.615 0.00 0.00 31.68 3.35
2095 2128 7.851508 TCTCTAGTGTTTTTCGTTCATTTCTG 58.148 34.615 0.00 0.00 0.00 3.02
2183 2246 2.332362 TAGGCCGACGCGCTTTCTAG 62.332 60.000 5.73 0.00 35.02 2.43
2184 2247 2.409055 TAGGCCGACGCGCTTTCTA 61.409 57.895 5.73 0.00 35.02 2.10
2219 2283 1.628846 ACCGGTGAGCTCTATTTTGGT 59.371 47.619 16.19 10.98 0.00 3.67
2275 2339 2.515996 AATGACGGGTGATCGCCGTT 62.516 55.000 18.92 8.09 39.41 4.44
2276 2340 3.014085 AATGACGGGTGATCGCCGT 62.014 57.895 18.92 18.67 41.00 5.68
2321 2385 3.726517 CCAAAGTGCAGGACGCCG 61.727 66.667 0.00 0.00 41.33 6.46
2347 2411 0.616111 GAGAAGGAGGAGGAGTGGCA 60.616 60.000 0.00 0.00 0.00 4.92
2404 2468 1.305297 AGGAGGTCAGCGATGTCCA 60.305 57.895 18.82 0.00 0.00 4.02
2409 2473 1.456705 GGAGGAGGAGGTCAGCGAT 60.457 63.158 0.00 0.00 0.00 4.58
2443 2513 2.766229 GGAGGAGGAGGAGGTGGC 60.766 72.222 0.00 0.00 0.00 5.01
2477 2547 2.357836 CCATGGAGGCTGCCAACT 59.642 61.111 22.65 0.00 42.16 3.16
2508 2578 3.399181 AGGATTTCCTCGCCGCCA 61.399 61.111 0.00 0.00 44.77 5.69
2564 2635 1.407989 GGTGAAGATGGAGCTCAAGGG 60.408 57.143 17.19 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.