Multiple sequence alignment - TraesCS5A01G212800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G212800 chr5A 100.000 3557 0 0 1 3557 427896666 427893110 0.000000e+00 6569.0
1 TraesCS5A01G212800 chr5A 73.629 383 87 13 3177 3548 368779277 368778898 6.190000e-28 135.0
2 TraesCS5A01G212800 chr5B 90.984 1952 110 25 668 2586 381842135 381844053 0.000000e+00 2569.0
3 TraesCS5A01G212800 chr5B 90.437 983 81 10 2586 3557 381844092 381845072 0.000000e+00 1282.0
4 TraesCS5A01G212800 chr5B 82.470 502 70 9 54 543 381841650 381842145 1.180000e-114 424.0
5 TraesCS5A01G212800 chr5D 90.269 1973 98 32 816 2746 328608207 328610127 0.000000e+00 2494.0
6 TraesCS5A01G212800 chr5D 78.554 401 54 19 3148 3543 426018551 426018924 5.940000e-58 235.0
7 TraesCS5A01G212800 chr5D 91.837 49 1 2 3102 3147 426018525 426018573 8.240000e-07 65.8
8 TraesCS5A01G212800 chr4B 77.183 355 65 15 3149 3491 86473906 86474256 3.620000e-45 193.0
9 TraesCS5A01G212800 chr1D 77.559 254 50 6 3162 3409 328861492 328861744 2.860000e-31 147.0
10 TraesCS5A01G212800 chr3B 79.545 176 26 8 3162 3332 447970799 447970969 2.240000e-22 117.0
11 TraesCS5A01G212800 chr3D 78.689 183 29 8 3162 3339 348146152 348146329 2.900000e-21 113.0
12 TraesCS5A01G212800 chr6D 73.294 337 74 9 3174 3503 380558630 380558957 3.750000e-20 110.0
13 TraesCS5A01G212800 chr6B 78.035 173 24 12 3162 3325 120799088 120798921 2.920000e-16 97.1
14 TraesCS5A01G212800 chr2D 97.872 47 1 0 3099 3145 609332308 609332262 8.180000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G212800 chr5A 427893110 427896666 3556 True 6569 6569 100.000000 1 3557 1 chr5A.!!$R2 3556
1 TraesCS5A01G212800 chr5B 381841650 381845072 3422 False 1425 2569 87.963667 54 3557 3 chr5B.!!$F1 3503
2 TraesCS5A01G212800 chr5D 328608207 328610127 1920 False 2494 2494 90.269000 816 2746 1 chr5D.!!$F1 1930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
680 692 0.033503 TCTGTACCCATCGGCTGAGA 60.034 55.0 0.0 0.0 0.0 3.27 F
681 693 0.103208 CTGTACCCATCGGCTGAGAC 59.897 60.0 0.0 0.0 0.0 3.36 F
1995 2040 0.179048 CTGCACACAACACTCTCCCA 60.179 55.0 0.0 0.0 0.0 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1514 1538 0.038892 TCACGGCGTACCTTCTTCAC 60.039 55.000 14.22 0.0 0.0 3.18 R
2445 2509 1.132721 TGCCCTATAGATGTGGAGCCT 60.133 52.381 0.00 0.0 0.0 4.58 R
3422 3544 0.252103 AGGGAGTTCGCCAAGGTCTA 60.252 55.000 0.00 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.616159 ACTCCCATCAACCCAAAACG 58.384 50.000 0.00 0.00 0.00 3.60
21 22 1.144093 ACTCCCATCAACCCAAAACGA 59.856 47.619 0.00 0.00 0.00 3.85
22 23 1.812571 CTCCCATCAACCCAAAACGAG 59.187 52.381 0.00 0.00 0.00 4.18
23 24 1.422024 TCCCATCAACCCAAAACGAGA 59.578 47.619 0.00 0.00 0.00 4.04
24 25 1.812571 CCCATCAACCCAAAACGAGAG 59.187 52.381 0.00 0.00 0.00 3.20
25 26 1.812571 CCATCAACCCAAAACGAGAGG 59.187 52.381 0.00 0.00 0.00 3.69
27 28 1.133363 TCAACCCAAAACGAGAGGGA 58.867 50.000 12.55 0.00 45.80 4.20
28 29 1.071699 TCAACCCAAAACGAGAGGGAG 59.928 52.381 12.55 6.12 45.80 4.30
29 30 1.071699 CAACCCAAAACGAGAGGGAGA 59.928 52.381 12.55 0.00 45.80 3.71
30 31 0.977395 ACCCAAAACGAGAGGGAGAG 59.023 55.000 12.55 0.00 45.80 3.20
31 32 0.250513 CCCAAAACGAGAGGGAGAGG 59.749 60.000 0.00 0.00 45.80 3.69
32 33 0.250513 CCAAAACGAGAGGGAGAGGG 59.749 60.000 0.00 0.00 0.00 4.30
33 34 1.267121 CAAAACGAGAGGGAGAGGGA 58.733 55.000 0.00 0.00 0.00 4.20
34 35 1.205893 CAAAACGAGAGGGAGAGGGAG 59.794 57.143 0.00 0.00 0.00 4.30
35 36 0.705253 AAACGAGAGGGAGAGGGAGA 59.295 55.000 0.00 0.00 0.00 3.71
36 37 0.257616 AACGAGAGGGAGAGGGAGAG 59.742 60.000 0.00 0.00 0.00 3.20
37 38 0.622154 ACGAGAGGGAGAGGGAGAGA 60.622 60.000 0.00 0.00 0.00 3.10
38 39 0.108585 CGAGAGGGAGAGGGAGAGAG 59.891 65.000 0.00 0.00 0.00 3.20
39 40 1.518367 GAGAGGGAGAGGGAGAGAGA 58.482 60.000 0.00 0.00 0.00 3.10
40 41 1.421646 GAGAGGGAGAGGGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
41 42 0.478507 GAGGGAGAGGGAGAGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
42 43 0.998945 AGGGAGAGGGAGAGAGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
43 44 0.996762 GGGAGAGGGAGAGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
44 45 0.478507 GGAGAGGGAGAGAGAGGGAG 59.521 65.000 0.00 0.00 0.00 4.30
45 46 1.518367 GAGAGGGAGAGAGAGGGAGA 58.482 60.000 0.00 0.00 0.00 3.71
46 47 1.421646 GAGAGGGAGAGAGAGGGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
47 48 0.478507 GAGGGAGAGAGAGGGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
48 49 0.998945 AGGGAGAGAGAGGGAGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
49 50 0.996762 GGGAGAGAGAGGGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
50 51 0.478507 GGAGAGAGAGGGAGAGGGAG 59.521 65.000 0.00 0.00 0.00 4.30
51 52 1.518367 GAGAGAGAGGGAGAGGGAGA 58.482 60.000 0.00 0.00 0.00 3.71
52 53 1.421646 GAGAGAGAGGGAGAGGGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
59 60 1.541672 GGAGAGGGAGAGGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
65 66 1.541672 GGAGAGGGAGAGGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
82 83 3.041946 AGAGGGAGAGAGAGAGAGAGAC 58.958 54.545 0.00 0.00 0.00 3.36
84 85 1.843851 GGGAGAGAGAGAGAGAGACCA 59.156 57.143 0.00 0.00 0.00 4.02
98 101 0.900647 AGACCAAGCGCTCACTACCT 60.901 55.000 12.06 0.27 0.00 3.08
104 107 4.554363 CGCTCACTACCTCGCCGG 62.554 72.222 0.00 0.00 39.35 6.13
106 109 3.003113 GCTCACTACCTCGCCGGTT 62.003 63.158 1.90 0.00 46.37 4.44
112 115 2.105766 ACTACCTCGCCGGTTAAATCT 58.894 47.619 1.90 0.00 46.37 2.40
114 117 2.884894 ACCTCGCCGGTTAAATCTAG 57.115 50.000 1.90 0.00 46.37 2.43
122 125 2.949644 CCGGTTAAATCTAGGCCCAAAG 59.050 50.000 0.00 0.00 0.00 2.77
124 127 4.461198 CGGTTAAATCTAGGCCCAAAGAT 58.539 43.478 0.00 2.65 33.87 2.40
125 128 4.275936 CGGTTAAATCTAGGCCCAAAGATG 59.724 45.833 12.31 0.00 32.79 2.90
128 131 2.947127 ATCTAGGCCCAAAGATGAGC 57.053 50.000 11.11 0.00 31.25 4.26
137 140 3.056322 GCCCAAAGATGAGCTCAAAATGT 60.056 43.478 22.50 2.87 0.00 2.71
204 212 2.097791 GCCACAAGTTACAAAACCGACA 59.902 45.455 0.00 0.00 36.15 4.35
205 213 3.243267 GCCACAAGTTACAAAACCGACAT 60.243 43.478 0.00 0.00 36.15 3.06
206 214 4.533222 CCACAAGTTACAAAACCGACATC 58.467 43.478 0.00 0.00 36.15 3.06
207 215 4.035792 CCACAAGTTACAAAACCGACATCA 59.964 41.667 0.00 0.00 36.15 3.07
212 220 4.443739 AGTTACAAAACCGACATCAGGTCA 60.444 41.667 0.00 0.00 41.95 4.02
220 228 2.682155 GACATCAGGTCACCTTCCTC 57.318 55.000 0.00 0.00 46.19 3.71
223 231 2.044492 ACATCAGGTCACCTTCCTCCTA 59.956 50.000 0.00 0.00 32.37 2.94
225 233 1.196012 CAGGTCACCTTCCTCCTACC 58.804 60.000 0.00 0.00 32.37 3.18
226 234 0.324460 AGGTCACCTTCCTCCTACCG 60.324 60.000 0.00 0.00 32.18 4.02
227 235 1.516423 GTCACCTTCCTCCTACCGC 59.484 63.158 0.00 0.00 0.00 5.68
228 236 0.971447 GTCACCTTCCTCCTACCGCT 60.971 60.000 0.00 0.00 0.00 5.52
229 237 0.970937 TCACCTTCCTCCTACCGCTG 60.971 60.000 0.00 0.00 0.00 5.18
230 238 2.359967 ACCTTCCTCCTACCGCTGC 61.360 63.158 0.00 0.00 0.00 5.25
234 242 1.614241 TTCCTCCTACCGCTGCTTCC 61.614 60.000 0.00 0.00 0.00 3.46
235 243 2.359169 CCTCCTACCGCTGCTTCCA 61.359 63.158 0.00 0.00 0.00 3.53
260 269 2.041405 GGCCCTCCCTCTGCTAGT 60.041 66.667 0.00 0.00 0.00 2.57
288 297 0.464036 CAAGGCGCCCTGTACTATGA 59.536 55.000 26.15 0.00 32.13 2.15
295 304 2.034812 CGCCCTGTACTATGAAGAGGTC 59.965 54.545 0.00 0.00 0.00 3.85
301 310 5.100344 TGTACTATGAAGAGGTCTCGAGT 57.900 43.478 13.13 0.00 34.09 4.18
307 316 4.873746 TGAAGAGGTCTCGAGTTTCAAT 57.126 40.909 13.13 2.63 34.09 2.57
308 317 4.560128 TGAAGAGGTCTCGAGTTTCAATG 58.440 43.478 13.13 0.00 34.09 2.82
311 320 4.962155 AGAGGTCTCGAGTTTCAATGTTT 58.038 39.130 13.13 0.00 34.09 2.83
317 326 2.690497 TCGAGTTTCAATGTTTTGGGCA 59.310 40.909 0.00 0.00 33.44 5.36
339 349 1.152830 GTTCCCACACCCACCACAT 59.847 57.895 0.00 0.00 0.00 3.21
341 351 1.356494 TTCCCACACCCACCACATCA 61.356 55.000 0.00 0.00 0.00 3.07
354 364 2.224597 ACCACATCATGAGTTGCAGACA 60.225 45.455 0.09 0.00 0.00 3.41
357 367 3.124806 CACATCATGAGTTGCAGACACTC 59.875 47.826 9.64 9.64 0.00 3.51
360 370 0.036952 ATGAGTTGCAGACACTCCCG 60.037 55.000 13.20 0.00 0.00 5.14
366 376 2.333417 GCAGACACTCCCGTCTCGA 61.333 63.158 0.00 0.00 44.49 4.04
381 391 1.191944 CTCGATGACGTCCACAATCG 58.808 55.000 22.85 22.85 40.69 3.34
420 430 3.734463 TGGTTGTAATTCAGCGAGACAA 58.266 40.909 0.00 0.00 0.00 3.18
422 432 4.391830 TGGTTGTAATTCAGCGAGACAATC 59.608 41.667 0.00 0.00 32.99 2.67
440 450 1.000019 CGTCTCCAGTACCCCCTCA 60.000 63.158 0.00 0.00 0.00 3.86
442 452 1.652947 GTCTCCAGTACCCCCTCAAA 58.347 55.000 0.00 0.00 0.00 2.69
447 457 1.357761 CCAGTACCCCCTCAAATGGTT 59.642 52.381 0.00 0.00 33.55 3.67
468 478 6.070194 TGGTTAGAATAGCTATCATAAGGGCC 60.070 42.308 6.72 0.00 0.00 5.80
469 479 6.350103 GTTAGAATAGCTATCATAAGGGCCC 58.650 44.000 16.46 16.46 0.00 5.80
471 481 0.902531 TAGCTATCATAAGGGCCCGC 59.097 55.000 18.44 11.39 0.00 6.13
482 494 2.478033 GGGCCCGCCTTTGAATACG 61.478 63.158 5.69 0.00 36.10 3.06
483 495 2.478033 GGCCCGCCTTTGAATACGG 61.478 63.158 0.00 0.00 45.21 4.02
493 505 4.275936 GCCTTTGAATACGGATGTGCTAAT 59.724 41.667 0.00 0.00 0.00 1.73
497 509 7.759433 CCTTTGAATACGGATGTGCTAATTTTT 59.241 33.333 0.00 0.00 0.00 1.94
498 510 8.459521 TTTGAATACGGATGTGCTAATTTTTG 57.540 30.769 0.00 0.00 0.00 2.44
499 511 6.033341 TGAATACGGATGTGCTAATTTTTGC 58.967 36.000 0.00 0.00 0.00 3.68
500 512 3.932545 ACGGATGTGCTAATTTTTGCA 57.067 38.095 0.00 0.00 36.62 4.08
501 513 4.454728 ACGGATGTGCTAATTTTTGCAT 57.545 36.364 2.93 0.00 40.69 3.96
524 536 8.951243 GCATTTTTCTAGATCAACTAGGACTTT 58.049 33.333 0.00 0.00 46.08 2.66
531 543 8.622157 TCTAGATCAACTAGGACTTTATGAACG 58.378 37.037 0.00 0.00 46.08 3.95
534 546 4.020928 TCAACTAGGACTTTATGAACGCCA 60.021 41.667 0.00 0.00 0.00 5.69
535 547 4.124851 ACTAGGACTTTATGAACGCCAG 57.875 45.455 0.00 0.00 0.00 4.85
543 555 0.390603 TATGAACGCCAGTCGGTTGG 60.391 55.000 2.18 2.18 38.87 3.77
565 577 6.969366 TGGCTAACCAATTTATGATCGAATG 58.031 36.000 0.00 0.00 45.37 2.67
566 578 6.770303 TGGCTAACCAATTTATGATCGAATGA 59.230 34.615 0.00 0.00 45.37 2.57
567 579 7.448161 TGGCTAACCAATTTATGATCGAATGAT 59.552 33.333 0.00 0.00 45.37 2.45
568 580 8.299570 GGCTAACCAATTTATGATCGAATGATT 58.700 33.333 0.00 0.00 32.88 2.57
581 593 8.947055 TGATCGAATGATTAGAAAGACATTGA 57.053 30.769 0.00 0.00 34.09 2.57
582 594 9.551734 TGATCGAATGATTAGAAAGACATTGAT 57.448 29.630 0.00 0.00 34.09 2.57
593 605 7.105241 AGAAAGACATTGATATTCTTTGCCC 57.895 36.000 4.45 0.00 39.22 5.36
594 606 6.664816 AGAAAGACATTGATATTCTTTGCCCA 59.335 34.615 4.45 0.00 39.22 5.36
595 607 7.343833 AGAAAGACATTGATATTCTTTGCCCAT 59.656 33.333 4.45 0.00 39.22 4.00
596 608 6.645790 AGACATTGATATTCTTTGCCCATC 57.354 37.500 0.00 0.00 0.00 3.51
597 609 6.131264 AGACATTGATATTCTTTGCCCATCA 58.869 36.000 0.00 0.00 0.00 3.07
598 610 6.608405 AGACATTGATATTCTTTGCCCATCAA 59.392 34.615 0.00 0.00 39.27 2.57
599 611 7.124599 AGACATTGATATTCTTTGCCCATCAAA 59.875 33.333 0.00 0.00 42.01 2.69
608 620 4.320608 TTTGCCCATCAAAGTTCAAGTC 57.679 40.909 0.00 0.00 39.58 3.01
609 621 3.228188 TGCCCATCAAAGTTCAAGTCT 57.772 42.857 0.00 0.00 0.00 3.24
610 622 3.149196 TGCCCATCAAAGTTCAAGTCTC 58.851 45.455 0.00 0.00 0.00 3.36
611 623 3.149196 GCCCATCAAAGTTCAAGTCTCA 58.851 45.455 0.00 0.00 0.00 3.27
612 624 3.190118 GCCCATCAAAGTTCAAGTCTCAG 59.810 47.826 0.00 0.00 0.00 3.35
613 625 4.645535 CCCATCAAAGTTCAAGTCTCAGA 58.354 43.478 0.00 0.00 0.00 3.27
614 626 4.453819 CCCATCAAAGTTCAAGTCTCAGAC 59.546 45.833 0.00 0.00 0.00 3.51
615 627 5.303971 CCATCAAAGTTCAAGTCTCAGACT 58.696 41.667 0.00 0.00 45.64 3.24
626 638 4.264460 AGTCTCAGACTTGACATTGGTC 57.736 45.455 0.00 0.00 40.28 4.02
627 639 3.900601 AGTCTCAGACTTGACATTGGTCT 59.099 43.478 0.00 0.00 40.28 3.85
628 640 4.021544 AGTCTCAGACTTGACATTGGTCTC 60.022 45.833 0.00 0.00 40.28 3.36
629 641 3.057245 TCTCAGACTTGACATTGGTCTCG 60.057 47.826 0.00 0.00 44.61 4.04
630 642 2.628178 TCAGACTTGACATTGGTCTCGT 59.372 45.455 0.00 0.00 44.61 4.18
631 643 3.069586 TCAGACTTGACATTGGTCTCGTT 59.930 43.478 0.00 0.00 44.61 3.85
632 644 3.185188 CAGACTTGACATTGGTCTCGTTG 59.815 47.826 0.00 0.00 44.61 4.10
633 645 3.069586 AGACTTGACATTGGTCTCGTTGA 59.930 43.478 0.00 0.00 44.61 3.18
634 646 3.131396 ACTTGACATTGGTCTCGTTGAC 58.869 45.455 0.00 3.42 44.61 3.18
645 657 3.654414 GTCTCGTTGACCACTTCAATCT 58.346 45.455 1.01 0.00 46.14 2.40
646 658 3.675698 GTCTCGTTGACCACTTCAATCTC 59.324 47.826 1.01 0.00 46.14 2.75
647 659 3.320826 TCTCGTTGACCACTTCAATCTCA 59.679 43.478 0.00 0.00 46.14 3.27
648 660 4.058124 CTCGTTGACCACTTCAATCTCAA 58.942 43.478 0.00 0.00 46.14 3.02
649 661 4.058124 TCGTTGACCACTTCAATCTCAAG 58.942 43.478 0.00 0.00 46.14 3.02
650 662 4.058124 CGTTGACCACTTCAATCTCAAGA 58.942 43.478 0.00 0.00 46.14 3.02
651 663 4.151335 CGTTGACCACTTCAATCTCAAGAG 59.849 45.833 0.00 0.00 46.14 2.85
652 664 3.668447 TGACCACTTCAATCTCAAGAGC 58.332 45.455 0.00 0.00 0.00 4.09
653 665 3.006247 GACCACTTCAATCTCAAGAGCC 58.994 50.000 0.00 0.00 0.00 4.70
654 666 2.005451 CCACTTCAATCTCAAGAGCCG 58.995 52.381 0.00 0.00 0.00 5.52
655 667 2.005451 CACTTCAATCTCAAGAGCCGG 58.995 52.381 0.00 0.00 0.00 6.13
656 668 1.012841 CTTCAATCTCAAGAGCCGGC 58.987 55.000 21.89 21.89 0.00 6.13
657 669 0.615331 TTCAATCTCAAGAGCCGGCT 59.385 50.000 33.48 33.48 0.00 5.52
658 670 0.176680 TCAATCTCAAGAGCCGGCTC 59.823 55.000 43.08 43.08 43.03 4.70
666 678 3.604629 GAGCCGGCTCAGTCTGTA 58.395 61.111 44.10 0.00 42.31 2.74
667 679 1.139947 GAGCCGGCTCAGTCTGTAC 59.860 63.158 44.10 20.07 42.31 2.90
668 680 2.184579 GCCGGCTCAGTCTGTACC 59.815 66.667 22.15 1.99 0.00 3.34
669 681 2.893398 CCGGCTCAGTCTGTACCC 59.107 66.667 0.00 0.00 0.00 3.69
670 682 1.982395 CCGGCTCAGTCTGTACCCA 60.982 63.158 0.00 0.00 0.00 4.51
671 683 1.330655 CCGGCTCAGTCTGTACCCAT 61.331 60.000 0.00 0.00 0.00 4.00
672 684 0.103208 CGGCTCAGTCTGTACCCATC 59.897 60.000 0.00 0.00 0.00 3.51
673 685 0.103208 GGCTCAGTCTGTACCCATCG 59.897 60.000 0.00 0.00 0.00 3.84
674 686 0.103208 GCTCAGTCTGTACCCATCGG 59.897 60.000 0.00 0.00 0.00 4.18
675 687 0.103208 CTCAGTCTGTACCCATCGGC 59.897 60.000 0.00 0.00 0.00 5.54
676 688 0.324368 TCAGTCTGTACCCATCGGCT 60.324 55.000 0.00 0.00 0.00 5.52
677 689 0.179100 CAGTCTGTACCCATCGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
678 690 0.324368 AGTCTGTACCCATCGGCTGA 60.324 55.000 0.00 0.00 0.00 4.26
679 691 0.103208 GTCTGTACCCATCGGCTGAG 59.897 60.000 0.00 0.00 0.00 3.35
680 692 0.033503 TCTGTACCCATCGGCTGAGA 60.034 55.000 0.00 0.00 0.00 3.27
681 693 0.103208 CTGTACCCATCGGCTGAGAC 59.897 60.000 0.00 0.00 0.00 3.36
712 724 2.611518 GTCGTCATAGAGCAACAGCTT 58.388 47.619 0.00 0.00 39.10 3.74
716 728 2.537625 GTCATAGAGCAACAGCTTAGCG 59.462 50.000 0.00 0.00 39.10 4.26
717 729 1.863454 CATAGAGCAACAGCTTAGCGG 59.137 52.381 2.25 2.25 39.10 5.52
738 750 3.062042 GAGCAAGCCAAAAATCACCAAG 58.938 45.455 0.00 0.00 0.00 3.61
756 768 6.658816 TCACCAAGTGTAAATCAGCACATTAT 59.341 34.615 0.00 0.00 38.02 1.28
760 772 6.349973 AGTGTAAATCAGCACATTATCACG 57.650 37.500 0.00 0.00 38.02 4.35
761 773 4.963953 GTGTAAATCAGCACATTATCACGC 59.036 41.667 0.00 0.00 35.81 5.34
777 789 0.843984 ACGCATATAGGGGCCAAACT 59.156 50.000 4.39 1.40 33.80 2.66
782 794 3.751518 CATATAGGGGCCAAACTGTACC 58.248 50.000 4.39 0.00 0.00 3.34
790 802 0.391263 CCAAACTGTACCGCTCCTCC 60.391 60.000 0.00 0.00 0.00 4.30
807 819 3.049674 CGCACGACACATGCCCTT 61.050 61.111 0.00 0.00 40.09 3.95
808 820 2.616330 CGCACGACACATGCCCTTT 61.616 57.895 0.00 0.00 40.09 3.11
809 821 1.081242 GCACGACACATGCCCTTTG 60.081 57.895 0.00 0.00 37.08 2.77
810 822 1.795170 GCACGACACATGCCCTTTGT 61.795 55.000 0.00 0.00 37.08 2.83
811 823 1.518325 CACGACACATGCCCTTTGTA 58.482 50.000 0.00 0.00 0.00 2.41
812 824 1.464608 CACGACACATGCCCTTTGTAG 59.535 52.381 0.00 0.00 0.00 2.74
881 893 3.127030 CACCCAAAAATAACCGAGAGAGC 59.873 47.826 0.00 0.00 0.00 4.09
886 898 1.765230 AATAACCGAGAGAGCGACCT 58.235 50.000 0.00 0.00 0.00 3.85
888 900 1.661341 TAACCGAGAGAGCGACCTAC 58.339 55.000 0.00 0.00 0.00 3.18
953 965 1.657181 GCTCAAAAACCACGTGCCG 60.657 57.895 10.91 0.00 0.00 5.69
1197 1221 3.488553 CGATCCATTTTAAAAGGGCGGAC 60.489 47.826 23.61 13.98 39.58 4.79
1254 1278 4.527583 GGAGGCAGCAGGAGAGCG 62.528 72.222 0.00 0.00 40.15 5.03
1297 1321 2.125912 CGGTGGAGAGGCGACTTG 60.126 66.667 0.00 0.00 44.43 3.16
1303 1327 1.578206 GGAGAGGCGACTTGGTTTGC 61.578 60.000 0.00 0.00 44.43 3.68
1353 1377 2.771762 ATGGCAGGAGGAGAGGGC 60.772 66.667 0.00 0.00 0.00 5.19
1456 1480 3.131223 CCGCTACATGAAGGAGAAGAAGA 59.869 47.826 0.00 0.00 0.00 2.87
1464 1488 3.251043 GAGAAGAAGAGCGGCGCG 61.251 66.667 27.59 0.00 0.00 6.86
1582 1606 7.201617 CGGTGAACTTCTTTTCTTGTAGAAAGT 60.202 37.037 2.52 0.00 44.14 2.66
1606 1630 0.798776 GGGATGTTTGTCTGCTGACG 59.201 55.000 17.59 0.00 45.70 4.35
1658 1703 8.560374 AGAAACAAAGTTCTTACAAGATGTAGC 58.440 33.333 0.00 0.00 34.03 3.58
1659 1704 7.801716 AACAAAGTTCTTACAAGATGTAGCA 57.198 32.000 0.00 0.00 33.92 3.49
1660 1705 7.190920 ACAAAGTTCTTACAAGATGTAGCAC 57.809 36.000 0.00 0.00 33.92 4.40
1661 1706 6.765989 ACAAAGTTCTTACAAGATGTAGCACA 59.234 34.615 0.00 0.00 33.92 4.57
1662 1707 6.787085 AAGTTCTTACAAGATGTAGCACAC 57.213 37.500 0.00 0.00 33.92 3.82
1663 1708 4.923871 AGTTCTTACAAGATGTAGCACACG 59.076 41.667 0.00 0.00 33.92 4.49
1664 1709 3.845178 TCTTACAAGATGTAGCACACGG 58.155 45.455 0.00 0.00 33.92 4.94
1665 1710 3.257375 TCTTACAAGATGTAGCACACGGT 59.743 43.478 0.00 0.00 33.92 4.83
1666 1711 2.543777 ACAAGATGTAGCACACGGTT 57.456 45.000 0.00 0.00 0.00 4.44
1667 1712 2.143122 ACAAGATGTAGCACACGGTTG 58.857 47.619 0.00 0.00 0.00 3.77
1668 1713 2.143122 CAAGATGTAGCACACGGTTGT 58.857 47.619 0.00 0.00 35.84 3.32
1822 1867 0.605319 TGACAACCAAGATGCCGGAC 60.605 55.000 5.05 0.00 0.00 4.79
1906 1951 2.176798 TCCACCAAGGTCAAGGATTTGT 59.823 45.455 0.00 0.00 39.02 2.83
1908 1953 3.005791 CCACCAAGGTCAAGGATTTGTTC 59.994 47.826 0.00 0.00 35.73 3.18
1909 1954 3.636300 CACCAAGGTCAAGGATTTGTTCA 59.364 43.478 0.00 0.00 35.73 3.18
1918 1963 3.173953 AGGATTTGTTCAAGATGGCCA 57.826 42.857 8.56 8.56 0.00 5.36
1983 2028 4.729918 CCTCCCCAGCCTGCACAC 62.730 72.222 0.00 0.00 0.00 3.82
1995 2040 0.179048 CTGCACACAACACTCTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
2013 2058 3.391296 TCCCAGGTACTAATTCTCATGGC 59.609 47.826 0.00 0.00 36.02 4.40
2015 2060 3.496870 CCAGGTACTAATTCTCATGGCCC 60.497 52.174 0.00 0.00 36.02 5.80
2021 2066 5.466127 ACTAATTCTCATGGCCCCTTTTA 57.534 39.130 0.00 0.00 0.00 1.52
2032 2077 2.040679 GGCCCCTTTTACAGTTCTACCA 59.959 50.000 0.00 0.00 0.00 3.25
2040 2085 8.028938 CCCTTTTACAGTTCTACCATGAAAATG 58.971 37.037 0.00 0.00 0.00 2.32
2042 2087 9.398170 CTTTTACAGTTCTACCATGAAAATGTG 57.602 33.333 0.00 0.00 33.28 3.21
2043 2088 5.964958 ACAGTTCTACCATGAAAATGTGG 57.035 39.130 0.00 0.00 41.35 4.17
2045 2090 6.248433 ACAGTTCTACCATGAAAATGTGGAT 58.752 36.000 0.00 0.00 38.86 3.41
2046 2091 6.151648 ACAGTTCTACCATGAAAATGTGGATG 59.848 38.462 0.00 0.00 38.86 3.51
2065 2126 5.070981 TGGATGAAGAGACTGTTTCAGAGTT 59.929 40.000 3.70 0.00 36.81 3.01
2075 2136 8.506168 AGACTGTTTCAGAGTTTCATGTAAAA 57.494 30.769 3.70 0.00 35.18 1.52
2077 2138 9.387123 GACTGTTTCAGAGTTTCATGTAAAATC 57.613 33.333 3.70 8.88 41.42 2.17
2093 2154 9.701098 CATGTAAAATCCCATATGAAATCCTTG 57.299 33.333 3.65 0.00 0.00 3.61
2245 2309 5.473504 TCCTGAAGGAAGACAGTAAAAATGC 59.526 40.000 0.00 0.00 42.18 3.56
2331 2395 0.379316 GGCGCCCTACCAAATTAACG 59.621 55.000 18.11 0.00 0.00 3.18
2387 2451 3.710722 AACTCCTGGCTCGGGCTG 61.711 66.667 7.48 0.00 38.73 4.85
2444 2508 5.530171 AGATATGCATGATGAACACTTGACC 59.470 40.000 10.16 0.00 0.00 4.02
2445 2509 2.861274 TGCATGATGAACACTTGACCA 58.139 42.857 0.00 0.00 0.00 4.02
2453 2518 0.179018 AACACTTGACCAGGCTCCAC 60.179 55.000 0.00 0.00 0.00 4.02
2506 2571 7.705325 AGCGTGGATGTTATTTTACTACTAGTG 59.295 37.037 5.39 0.00 0.00 2.74
2508 2573 7.490079 CGTGGATGTTATTTTACTACTAGTGCA 59.510 37.037 5.39 0.00 0.00 4.57
2563 2628 8.754991 ATAATCGGGTGTTGGTTATTCATTTA 57.245 30.769 0.00 0.00 0.00 1.40
2759 2871 3.005684 TCAACATGTCATGGAAAGTTGCC 59.994 43.478 17.08 0.00 37.02 4.52
2760 2872 2.596346 ACATGTCATGGAAAGTTGCCA 58.404 42.857 17.08 4.61 40.24 4.92
2784 2896 6.472163 CAGCGCGTTCCTTGATTATTTTATTT 59.528 34.615 8.43 0.00 0.00 1.40
2786 2898 7.009174 AGCGCGTTCCTTGATTATTTTATTTTG 59.991 33.333 8.43 0.00 0.00 2.44
2788 2900 8.643752 CGCGTTCCTTGATTATTTTATTTTGTT 58.356 29.630 0.00 0.00 0.00 2.83
2818 2930 2.481441 AGTCCCCTGATTCATGCAGTA 58.519 47.619 0.00 0.00 0.00 2.74
2822 2934 2.477825 CCCTGATTCATGCAGTACTCG 58.522 52.381 0.00 0.00 0.00 4.18
2827 2939 5.446473 CCTGATTCATGCAGTACTCGTTTTC 60.446 44.000 0.00 0.00 0.00 2.29
2828 2940 5.237815 TGATTCATGCAGTACTCGTTTTCT 58.762 37.500 0.00 0.00 0.00 2.52
2829 2941 5.700832 TGATTCATGCAGTACTCGTTTTCTT 59.299 36.000 0.00 0.00 0.00 2.52
2838 2950 7.225931 TGCAGTACTCGTTTTCTTTTCTTACAT 59.774 33.333 0.00 0.00 0.00 2.29
2899 3011 2.979678 ACTTCTGCTACCCCTCAAAAGA 59.020 45.455 0.00 0.00 0.00 2.52
2972 3084 6.478588 GGATCTAATGTTCAGCAAAACTACG 58.521 40.000 0.00 0.00 0.00 3.51
2982 3094 4.021822 CAGCAAAACTACGACGCATTATG 58.978 43.478 0.00 0.00 0.00 1.90
3064 3177 1.396996 GGCATCAAATGTACGTTCGCT 59.603 47.619 0.00 0.00 0.00 4.93
3097 3213 7.478520 TTTCTGTGCTTGAAGTACTAGAAAC 57.521 36.000 22.92 0.00 35.47 2.78
3099 3215 6.759272 TCTGTGCTTGAAGTACTAGAAACAT 58.241 36.000 14.28 0.00 31.77 2.71
3100 3216 6.868864 TCTGTGCTTGAAGTACTAGAAACATC 59.131 38.462 14.28 0.00 31.77 3.06
3101 3217 6.521162 TGTGCTTGAAGTACTAGAAACATCA 58.479 36.000 14.28 0.24 31.77 3.07
3104 3220 8.012241 GTGCTTGAAGTACTAGAAACATCAAAG 58.988 37.037 15.90 12.56 35.04 2.77
3270 3390 6.420008 ACTTATTGTCACGTGTTCTAGTTGTC 59.580 38.462 16.51 0.00 0.00 3.18
3278 3398 6.042777 CACGTGTTCTAGTTGTCCATATGAT 58.957 40.000 7.58 0.00 0.00 2.45
3281 3401 6.359883 CGTGTTCTAGTTGTCCATATGATACG 59.640 42.308 3.65 0.00 0.00 3.06
3300 3420 0.953727 GCCCGCATATGCTCAATCAA 59.046 50.000 24.56 0.00 39.32 2.57
3304 3424 4.321156 GCCCGCATATGCTCAATCAAATAA 60.321 41.667 24.56 0.00 39.32 1.40
3334 3455 2.159184 TGCTCATGAGTTCCTCGATCAC 60.159 50.000 23.38 3.35 32.35 3.06
3361 3482 4.707030 TGCTGATGCATTTCGAGAAAAT 57.293 36.364 0.00 0.00 45.31 1.82
3369 3490 5.460646 TGCATTTCGAGAAAATCCTCAAAC 58.539 37.500 2.17 0.00 35.32 2.93
3371 3492 5.689819 CATTTCGAGAAAATCCTCAAACGT 58.310 37.500 2.17 0.00 35.32 3.99
3372 3493 5.744666 TTTCGAGAAAATCCTCAAACGTT 57.255 34.783 0.00 0.00 32.86 3.99
3373 3494 4.725556 TCGAGAAAATCCTCAAACGTTG 57.274 40.909 0.00 0.00 32.86 4.10
3374 3495 4.124238 TCGAGAAAATCCTCAAACGTTGT 58.876 39.130 0.00 0.00 32.86 3.32
3375 3496 4.573201 TCGAGAAAATCCTCAAACGTTGTT 59.427 37.500 0.00 0.00 32.86 2.83
3378 3499 4.642885 AGAAAATCCTCAAACGTTGTTGGA 59.357 37.500 15.51 15.51 38.17 3.53
3385 3506 2.948979 TCAAACGTTGTTGGATTCTGCT 59.051 40.909 0.00 0.00 0.00 4.24
3388 3509 2.571212 ACGTTGTTGGATTCTGCTTCA 58.429 42.857 0.00 0.00 0.00 3.02
3389 3510 2.549754 ACGTTGTTGGATTCTGCTTCAG 59.450 45.455 0.00 0.00 0.00 3.02
3422 3544 3.054065 GGACCACCCATCTCTTGAAATCT 60.054 47.826 0.00 0.00 34.14 2.40
3430 3552 6.054295 CCCATCTCTTGAAATCTAGACCTTG 58.946 44.000 0.00 0.00 0.00 3.61
3433 3555 3.861840 TCTTGAAATCTAGACCTTGGCG 58.138 45.455 0.00 0.00 0.00 5.69
3448 3570 1.251527 TGGCGAACTCCCTCACTCTC 61.252 60.000 0.00 0.00 0.00 3.20
3451 3573 1.202359 GCGAACTCCCTCACTCTCATC 60.202 57.143 0.00 0.00 0.00 2.92
3457 3579 1.118838 CCCTCACTCTCATCCTCCAC 58.881 60.000 0.00 0.00 0.00 4.02
3459 3581 1.755959 CCTCACTCTCATCCTCCACAG 59.244 57.143 0.00 0.00 0.00 3.66
3493 3615 7.663081 GTCCATGACCATATAAGTTGTCATCAT 59.337 37.037 0.00 0.00 44.35 2.45
3495 3617 7.120285 CCATGACCATATAAGTTGTCATCATCC 59.880 40.741 0.00 0.00 44.35 3.51
3497 3619 5.880901 ACCATATAAGTTGTCATCATCCCC 58.119 41.667 0.00 0.00 0.00 4.81
3498 3620 5.612688 ACCATATAAGTTGTCATCATCCCCT 59.387 40.000 0.00 0.00 0.00 4.79
3500 3622 7.038017 ACCATATAAGTTGTCATCATCCCCTAG 60.038 40.741 0.00 0.00 0.00 3.02
3504 3626 4.104086 AGTTGTCATCATCCCCTAGAACA 58.896 43.478 0.00 0.00 0.00 3.18
3508 3630 5.715921 TGTCATCATCCCCTAGAACATCTA 58.284 41.667 0.00 0.00 0.00 1.98
3516 3638 4.774726 TCCCCTAGAACATCTATGCATCTC 59.225 45.833 0.19 0.00 32.00 2.75
3530 3652 4.077300 TGCATCTCATAGTTTAGCAGGG 57.923 45.455 0.00 0.00 0.00 4.45
3544 3666 0.881796 GCAGGGCCTCAAACAACTAC 59.118 55.000 0.95 0.00 0.00 2.73
3549 3671 4.039124 CAGGGCCTCAAACAACTACAAAAT 59.961 41.667 0.95 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.372504 TCGTTTTGGGTTGATGGGAGTA 59.627 45.455 0.00 0.00 0.00 2.59
1 2 1.144093 TCGTTTTGGGTTGATGGGAGT 59.856 47.619 0.00 0.00 0.00 3.85
2 3 1.812571 CTCGTTTTGGGTTGATGGGAG 59.187 52.381 0.00 0.00 0.00 4.30
3 4 1.422024 TCTCGTTTTGGGTTGATGGGA 59.578 47.619 0.00 0.00 0.00 4.37
4 5 1.812571 CTCTCGTTTTGGGTTGATGGG 59.187 52.381 0.00 0.00 0.00 4.00
5 6 1.812571 CCTCTCGTTTTGGGTTGATGG 59.187 52.381 0.00 0.00 0.00 3.51
6 7 1.812571 CCCTCTCGTTTTGGGTTGATG 59.187 52.381 0.00 0.00 36.32 3.07
7 8 1.702957 TCCCTCTCGTTTTGGGTTGAT 59.297 47.619 0.00 0.00 41.58 2.57
8 9 1.071699 CTCCCTCTCGTTTTGGGTTGA 59.928 52.381 0.00 0.00 41.58 3.18
9 10 1.071699 TCTCCCTCTCGTTTTGGGTTG 59.928 52.381 0.00 0.00 41.58 3.77
10 11 1.348036 CTCTCCCTCTCGTTTTGGGTT 59.652 52.381 0.00 0.00 41.58 4.11
11 12 0.977395 CTCTCCCTCTCGTTTTGGGT 59.023 55.000 0.00 0.00 41.58 4.51
12 13 0.250513 CCTCTCCCTCTCGTTTTGGG 59.749 60.000 0.00 0.00 42.20 4.12
13 14 0.250513 CCCTCTCCCTCTCGTTTTGG 59.749 60.000 0.00 0.00 0.00 3.28
14 15 1.205893 CTCCCTCTCCCTCTCGTTTTG 59.794 57.143 0.00 0.00 0.00 2.44
15 16 1.077334 TCTCCCTCTCCCTCTCGTTTT 59.923 52.381 0.00 0.00 0.00 2.43
16 17 0.705253 TCTCCCTCTCCCTCTCGTTT 59.295 55.000 0.00 0.00 0.00 3.60
17 18 0.257616 CTCTCCCTCTCCCTCTCGTT 59.742 60.000 0.00 0.00 0.00 3.85
18 19 0.622154 TCTCTCCCTCTCCCTCTCGT 60.622 60.000 0.00 0.00 0.00 4.18
19 20 0.108585 CTCTCTCCCTCTCCCTCTCG 59.891 65.000 0.00 0.00 0.00 4.04
20 21 1.421646 CTCTCTCTCCCTCTCCCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
21 22 1.522900 CTCTCTCTCCCTCTCCCTCT 58.477 60.000 0.00 0.00 0.00 3.69
22 23 0.478507 CCTCTCTCTCCCTCTCCCTC 59.521 65.000 0.00 0.00 0.00 4.30
23 24 0.998945 CCCTCTCTCTCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
24 25 0.996762 TCCCTCTCTCTCCCTCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
25 26 0.478507 CTCCCTCTCTCTCCCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
26 27 1.421646 CTCTCCCTCTCTCTCCCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
27 28 1.522900 CTCTCCCTCTCTCTCCCTCT 58.477 60.000 0.00 0.00 0.00 3.69
28 29 0.478507 CCTCTCCCTCTCTCTCCCTC 59.521 65.000 0.00 0.00 0.00 4.30
29 30 0.998945 CCCTCTCCCTCTCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
30 31 0.996762 TCCCTCTCCCTCTCTCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
31 32 0.478507 CTCCCTCTCCCTCTCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
32 33 1.421646 CTCTCCCTCTCCCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
33 34 1.522900 CTCTCCCTCTCCCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
34 35 0.478507 CCTCTCCCTCTCCCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
35 36 0.998945 CCCTCTCCCTCTCCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
36 37 0.996762 TCCCTCTCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
37 38 0.998945 CTCCCTCTCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
38 39 0.996762 TCTCCCTCTCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
39 40 0.998945 CTCTCCCTCTCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
40 41 1.541672 CTCTCCCTCTCCCTCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
41 42 1.541672 CCTCTCCCTCTCCCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
42 43 0.996762 TCCCTCTCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
43 44 0.998945 CTCCCTCTCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
44 45 0.996762 TCTCCCTCTCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
45 46 0.998945 CTCTCCCTCTCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
46 47 1.541672 CTCTCCCTCTCCCTCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
47 48 1.541672 CCTCTCCCTCTCCCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
48 49 0.996762 TCCCTCTCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
49 50 0.998945 CTCCCTCTCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
50 51 0.996762 TCTCCCTCTCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
51 52 0.998945 CTCTCCCTCTCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
52 53 0.996762 TCTCTCCCTCTCCCTCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
59 60 2.370189 CTCTCTCTCTCTCTCCCTCTCC 59.630 59.091 0.00 0.00 0.00 3.71
65 66 3.545703 CTTGGTCTCTCTCTCTCTCTCC 58.454 54.545 0.00 0.00 0.00 3.71
82 83 1.517257 CGAGGTAGTGAGCGCTTGG 60.517 63.158 13.26 0.00 0.00 3.61
84 85 2.182030 GCGAGGTAGTGAGCGCTT 59.818 61.111 13.26 0.00 45.41 4.68
98 101 0.105408 GGCCTAGATTTAACCGGCGA 59.895 55.000 9.30 0.00 41.58 5.54
104 107 5.009110 GCTCATCTTTGGGCCTAGATTTAAC 59.991 44.000 16.02 6.03 44.06 2.01
106 109 4.718961 GCTCATCTTTGGGCCTAGATTTA 58.281 43.478 16.02 8.90 44.06 1.40
173 181 5.652994 TGTAACTTGTGGCTTTGAGTTTT 57.347 34.783 0.00 0.00 34.46 2.43
176 184 5.407502 GTTTTGTAACTTGTGGCTTTGAGT 58.592 37.500 0.00 0.00 0.00 3.41
179 187 3.549873 CGGTTTTGTAACTTGTGGCTTTG 59.450 43.478 0.00 0.00 34.59 2.77
183 191 2.097791 TGTCGGTTTTGTAACTTGTGGC 59.902 45.455 0.00 0.00 34.59 5.01
204 212 2.627217 GGTAGGAGGAAGGTGACCTGAT 60.627 54.545 4.15 0.00 37.93 2.90
205 213 1.273098 GGTAGGAGGAAGGTGACCTGA 60.273 57.143 4.15 0.00 37.93 3.86
206 214 1.196012 GGTAGGAGGAAGGTGACCTG 58.804 60.000 4.15 0.00 37.93 4.00
207 215 0.324460 CGGTAGGAGGAAGGTGACCT 60.324 60.000 0.00 0.00 40.80 3.85
212 220 2.359967 GCAGCGGTAGGAGGAAGGT 61.360 63.158 0.00 0.00 0.00 3.50
220 228 1.463674 AAAATGGAAGCAGCGGTAGG 58.536 50.000 0.00 0.00 0.00 3.18
244 253 1.524482 CAACTAGCAGAGGGAGGGC 59.476 63.158 0.00 0.00 0.00 5.19
270 279 1.139058 CTTCATAGTACAGGGCGCCTT 59.861 52.381 28.56 18.19 0.00 4.35
280 289 6.093771 TGAAACTCGAGACCTCTTCATAGTAC 59.906 42.308 21.68 0.00 0.00 2.73
288 297 4.608948 ACATTGAAACTCGAGACCTCTT 57.391 40.909 21.68 0.00 0.00 2.85
295 304 3.243367 TGCCCAAAACATTGAAACTCGAG 60.243 43.478 11.84 11.84 0.00 4.04
301 310 5.067023 GGAACAAATGCCCAAAACATTGAAA 59.933 36.000 0.00 0.00 37.78 2.69
307 316 2.629336 GGGAACAAATGCCCAAAACA 57.371 45.000 0.00 0.00 44.07 2.83
317 326 0.263172 TGGTGGGTGTGGGAACAAAT 59.737 50.000 0.00 0.00 46.06 2.32
339 349 1.002430 GGGAGTGTCTGCAACTCATGA 59.998 52.381 16.73 0.00 32.52 3.07
341 351 0.036952 CGGGAGTGTCTGCAACTCAT 60.037 55.000 16.73 0.00 32.52 2.90
360 370 2.186076 GATTGTGGACGTCATCGAGAC 58.814 52.381 18.91 4.23 44.02 3.36
366 376 1.809619 CGGCGATTGTGGACGTCAT 60.810 57.895 18.91 1.23 33.63 3.06
372 382 0.533085 TCAACAACGGCGATTGTGGA 60.533 50.000 21.97 21.32 42.01 4.02
373 383 0.521291 ATCAACAACGGCGATTGTGG 59.479 50.000 21.97 19.85 42.01 4.17
377 387 1.737793 GAGGAATCAACAACGGCGATT 59.262 47.619 16.62 0.32 32.15 3.34
381 391 1.133025 CCATGAGGAATCAACAACGGC 59.867 52.381 0.00 0.00 36.89 5.68
420 430 0.106116 GAGGGGGTACTGGAGACGAT 60.106 60.000 0.00 0.00 0.00 3.73
422 432 0.613853 TTGAGGGGGTACTGGAGACG 60.614 60.000 0.00 0.00 0.00 4.18
430 440 4.579647 TTCTAACCATTTGAGGGGGTAC 57.420 45.455 0.00 0.00 33.71 3.34
440 450 9.965902 CCCTTATGATAGCTATTCTAACCATTT 57.034 33.333 7.87 0.00 0.00 2.32
442 452 7.366011 GGCCCTTATGATAGCTATTCTAACCAT 60.366 40.741 7.87 7.98 0.00 3.55
447 457 4.649674 CGGGCCCTTATGATAGCTATTCTA 59.350 45.833 22.43 0.08 0.00 2.10
464 474 2.478033 CGTATTCAAAGGCGGGCCC 61.478 63.158 13.57 13.57 36.58 5.80
468 478 1.330521 CACATCCGTATTCAAAGGCGG 59.669 52.381 0.00 0.00 44.95 6.13
469 479 1.268032 GCACATCCGTATTCAAAGGCG 60.268 52.381 0.00 0.00 0.00 5.52
471 481 6.377327 AATTAGCACATCCGTATTCAAAGG 57.623 37.500 0.00 0.00 0.00 3.11
482 494 7.809665 AGAAAAATGCAAAAATTAGCACATCC 58.190 30.769 0.00 0.00 44.49 3.51
483 495 9.962759 CTAGAAAAATGCAAAAATTAGCACATC 57.037 29.630 0.00 1.03 44.49 3.06
493 505 9.912634 CCTAGTTGATCTAGAAAAATGCAAAAA 57.087 29.630 0.00 0.00 46.53 1.94
497 509 7.624549 AGTCCTAGTTGATCTAGAAAAATGCA 58.375 34.615 0.00 0.00 46.53 3.96
498 510 8.499403 AAGTCCTAGTTGATCTAGAAAAATGC 57.501 34.615 0.00 0.00 46.53 3.56
517 529 2.674177 CGACTGGCGTTCATAAAGTCCT 60.674 50.000 0.00 0.00 35.00 3.85
518 530 1.659098 CGACTGGCGTTCATAAAGTCC 59.341 52.381 0.00 0.00 35.00 3.85
524 536 0.390603 CCAACCGACTGGCGTTCATA 60.391 55.000 0.71 0.00 39.70 2.15
555 567 9.551734 TCAATGTCTTTCTAATCATTCGATCAT 57.448 29.630 0.00 0.00 0.00 2.45
556 568 8.947055 TCAATGTCTTTCTAATCATTCGATCA 57.053 30.769 0.00 0.00 0.00 2.92
567 579 8.686334 GGGCAAAGAATATCAATGTCTTTCTAA 58.314 33.333 0.00 0.00 39.09 2.10
568 580 7.833682 TGGGCAAAGAATATCAATGTCTTTCTA 59.166 33.333 0.00 0.00 39.09 2.10
569 581 6.664816 TGGGCAAAGAATATCAATGTCTTTCT 59.335 34.615 0.00 0.00 39.09 2.52
570 582 6.866480 TGGGCAAAGAATATCAATGTCTTTC 58.134 36.000 0.00 0.00 39.09 2.62
571 583 6.855763 TGGGCAAAGAATATCAATGTCTTT 57.144 33.333 0.00 0.00 41.20 2.52
572 584 6.608405 TGATGGGCAAAGAATATCAATGTCTT 59.392 34.615 0.00 0.00 33.01 3.01
573 585 6.131264 TGATGGGCAAAGAATATCAATGTCT 58.869 36.000 0.00 0.00 0.00 3.41
574 586 6.395426 TGATGGGCAAAGAATATCAATGTC 57.605 37.500 0.00 0.00 0.00 3.06
575 587 6.795144 TTGATGGGCAAAGAATATCAATGT 57.205 33.333 0.00 0.00 34.04 2.71
587 599 3.960102 AGACTTGAACTTTGATGGGCAAA 59.040 39.130 0.00 0.00 43.89 3.68
588 600 3.565307 AGACTTGAACTTTGATGGGCAA 58.435 40.909 0.00 0.00 33.88 4.52
589 601 3.149196 GAGACTTGAACTTTGATGGGCA 58.851 45.455 0.00 0.00 0.00 5.36
590 602 3.149196 TGAGACTTGAACTTTGATGGGC 58.851 45.455 0.00 0.00 0.00 5.36
591 603 4.453819 GTCTGAGACTTGAACTTTGATGGG 59.546 45.833 5.12 0.00 0.00 4.00
592 604 5.303971 AGTCTGAGACTTGAACTTTGATGG 58.696 41.667 9.77 0.00 40.28 3.51
605 617 3.900601 AGACCAATGTCAAGTCTGAGACT 59.099 43.478 9.77 9.77 44.33 3.24
606 618 4.241681 GAGACCAATGTCAAGTCTGAGAC 58.758 47.826 3.98 3.98 44.33 3.36
607 619 3.057245 CGAGACCAATGTCAAGTCTGAGA 60.057 47.826 7.94 0.00 44.33 3.27
608 620 3.249091 CGAGACCAATGTCAAGTCTGAG 58.751 50.000 7.94 0.72 44.33 3.35
609 621 2.628178 ACGAGACCAATGTCAAGTCTGA 59.372 45.455 7.94 0.00 44.33 3.27
610 622 3.032017 ACGAGACCAATGTCAAGTCTG 57.968 47.619 7.94 4.57 44.33 3.51
611 623 3.069586 TCAACGAGACCAATGTCAAGTCT 59.930 43.478 3.84 3.84 44.33 3.24
612 624 3.184581 GTCAACGAGACCAATGTCAAGTC 59.815 47.826 0.00 0.00 44.33 3.01
613 625 3.131396 GTCAACGAGACCAATGTCAAGT 58.869 45.455 0.00 0.00 44.33 3.16
614 626 3.795561 GTCAACGAGACCAATGTCAAG 57.204 47.619 0.00 0.00 44.33 3.02
631 643 3.557898 GGCTCTTGAGATTGAAGTGGTCA 60.558 47.826 1.30 0.00 0.00 4.02
632 644 3.006247 GGCTCTTGAGATTGAAGTGGTC 58.994 50.000 1.30 0.00 0.00 4.02
633 645 2.613977 CGGCTCTTGAGATTGAAGTGGT 60.614 50.000 1.30 0.00 0.00 4.16
634 646 2.005451 CGGCTCTTGAGATTGAAGTGG 58.995 52.381 1.30 0.00 0.00 4.00
635 647 2.005451 CCGGCTCTTGAGATTGAAGTG 58.995 52.381 1.30 0.00 0.00 3.16
636 648 1.677217 GCCGGCTCTTGAGATTGAAGT 60.677 52.381 22.15 0.00 0.00 3.01
637 649 1.012841 GCCGGCTCTTGAGATTGAAG 58.987 55.000 22.15 0.00 0.00 3.02
638 650 0.615331 AGCCGGCTCTTGAGATTGAA 59.385 50.000 27.08 0.00 0.00 2.69
639 651 0.176680 GAGCCGGCTCTTGAGATTGA 59.823 55.000 42.50 0.00 39.80 2.57
640 652 0.107993 TGAGCCGGCTCTTGAGATTG 60.108 55.000 46.04 0.00 43.12 2.67
641 653 0.177604 CTGAGCCGGCTCTTGAGATT 59.822 55.000 46.04 18.38 43.12 2.40
642 654 0.975040 ACTGAGCCGGCTCTTGAGAT 60.975 55.000 46.04 26.55 43.12 2.75
643 655 1.599606 GACTGAGCCGGCTCTTGAGA 61.600 60.000 46.04 30.28 43.12 3.27
644 656 1.153667 GACTGAGCCGGCTCTTGAG 60.154 63.158 46.04 38.01 43.12 3.02
645 657 1.607756 AGACTGAGCCGGCTCTTGA 60.608 57.895 46.04 30.96 43.12 3.02
646 658 1.447489 CAGACTGAGCCGGCTCTTG 60.447 63.158 46.04 38.82 43.12 3.02
647 659 0.612174 TACAGACTGAGCCGGCTCTT 60.612 55.000 46.04 35.96 43.12 2.85
648 660 1.000771 TACAGACTGAGCCGGCTCT 60.001 57.895 46.04 33.35 43.12 4.09
649 661 1.139947 GTACAGACTGAGCCGGCTC 59.860 63.158 43.07 43.07 43.01 4.70
650 662 2.352032 GGTACAGACTGAGCCGGCT 61.352 63.158 33.48 33.48 0.00 5.52
651 663 2.184579 GGTACAGACTGAGCCGGC 59.815 66.667 21.89 21.89 0.00 6.13
652 664 1.330655 ATGGGTACAGACTGAGCCGG 61.331 60.000 10.08 0.00 35.93 6.13
653 665 0.103208 GATGGGTACAGACTGAGCCG 59.897 60.000 10.08 0.00 35.93 5.52
654 666 0.103208 CGATGGGTACAGACTGAGCC 59.897 60.000 10.08 12.06 0.00 4.70
655 667 0.103208 CCGATGGGTACAGACTGAGC 59.897 60.000 10.08 2.67 0.00 4.26
656 668 0.103208 GCCGATGGGTACAGACTGAG 59.897 60.000 10.08 0.00 34.97 3.35
657 669 0.324368 AGCCGATGGGTACAGACTGA 60.324 55.000 10.08 0.00 34.97 3.41
658 670 0.179100 CAGCCGATGGGTACAGACTG 60.179 60.000 0.00 0.00 34.97 3.51
659 671 0.324368 TCAGCCGATGGGTACAGACT 60.324 55.000 0.00 0.00 34.97 3.24
660 672 0.103208 CTCAGCCGATGGGTACAGAC 59.897 60.000 0.00 0.00 34.97 3.51
661 673 0.033503 TCTCAGCCGATGGGTACAGA 60.034 55.000 0.00 0.00 34.97 3.41
662 674 0.103208 GTCTCAGCCGATGGGTACAG 59.897 60.000 0.00 0.00 34.97 2.74
663 675 0.324368 AGTCTCAGCCGATGGGTACA 60.324 55.000 0.00 0.00 34.97 2.90
664 676 1.609555 CTAGTCTCAGCCGATGGGTAC 59.390 57.143 0.00 0.00 34.97 3.34
665 677 1.214673 ACTAGTCTCAGCCGATGGGTA 59.785 52.381 0.00 0.00 34.97 3.69
666 678 0.033011 ACTAGTCTCAGCCGATGGGT 60.033 55.000 0.00 0.00 34.97 4.51
667 679 1.982660 TACTAGTCTCAGCCGATGGG 58.017 55.000 0.00 0.00 0.00 4.00
668 680 4.113354 GTTTTACTAGTCTCAGCCGATGG 58.887 47.826 0.00 0.00 0.00 3.51
669 681 4.113354 GGTTTTACTAGTCTCAGCCGATG 58.887 47.826 0.00 0.00 0.00 3.84
670 682 3.181489 CGGTTTTACTAGTCTCAGCCGAT 60.181 47.826 15.08 0.00 39.05 4.18
671 683 2.163010 CGGTTTTACTAGTCTCAGCCGA 59.837 50.000 15.08 0.00 39.05 5.54
672 684 2.094854 ACGGTTTTACTAGTCTCAGCCG 60.095 50.000 17.32 17.32 41.99 5.52
673 685 3.509740 GACGGTTTTACTAGTCTCAGCC 58.490 50.000 0.00 0.00 0.00 4.85
674 686 3.169733 CGACGGTTTTACTAGTCTCAGC 58.830 50.000 0.00 0.00 0.00 4.26
675 687 4.083643 TGACGACGGTTTTACTAGTCTCAG 60.084 45.833 0.00 0.00 0.00 3.35
676 688 3.814842 TGACGACGGTTTTACTAGTCTCA 59.185 43.478 0.00 0.00 0.00 3.27
677 689 4.410492 TGACGACGGTTTTACTAGTCTC 57.590 45.455 0.00 0.00 0.00 3.36
678 690 5.877012 TCTATGACGACGGTTTTACTAGTCT 59.123 40.000 0.00 0.00 0.00 3.24
679 691 6.111768 TCTATGACGACGGTTTTACTAGTC 57.888 41.667 0.00 0.00 0.00 2.59
680 692 5.448360 GCTCTATGACGACGGTTTTACTAGT 60.448 44.000 0.00 0.00 0.00 2.57
681 693 4.968788 GCTCTATGACGACGGTTTTACTAG 59.031 45.833 0.00 0.00 0.00 2.57
712 724 1.472480 GATTTTTGGCTTGCTCCGCTA 59.528 47.619 0.00 0.00 0.00 4.26
716 728 1.344114 TGGTGATTTTTGGCTTGCTCC 59.656 47.619 0.00 0.00 0.00 4.70
717 729 2.818130 TGGTGATTTTTGGCTTGCTC 57.182 45.000 0.00 0.00 0.00 4.26
738 750 4.963953 GCGTGATAATGTGCTGATTTACAC 59.036 41.667 0.00 0.00 37.31 2.90
756 768 0.840617 TTTGGCCCCTATATGCGTGA 59.159 50.000 0.00 0.00 0.00 4.35
760 772 2.364972 ACAGTTTGGCCCCTATATGC 57.635 50.000 0.00 0.00 0.00 3.14
761 773 3.751518 GGTACAGTTTGGCCCCTATATG 58.248 50.000 0.00 0.00 0.00 1.78
777 789 3.755628 GTGCGGAGGAGCGGTACA 61.756 66.667 0.00 0.00 40.67 2.90
790 802 2.616330 AAAGGGCATGTGTCGTGCG 61.616 57.895 7.66 0.00 46.18 5.34
806 818 0.935831 CGCGACGTGTGACCTACAAA 60.936 55.000 0.00 0.00 41.89 2.83
807 819 1.370778 CGCGACGTGTGACCTACAA 60.371 57.895 0.00 0.00 41.89 2.41
808 820 2.253154 CGCGACGTGTGACCTACA 59.747 61.111 0.00 0.00 36.82 2.74
809 821 1.795177 GACGCGACGTGTGACCTAC 60.795 63.158 20.29 0.00 41.37 3.18
810 822 1.904852 GAGACGCGACGTGTGACCTA 61.905 60.000 20.29 0.00 41.37 3.08
811 823 3.251318 GAGACGCGACGTGTGACCT 62.251 63.158 20.29 9.92 41.37 3.85
812 824 2.799916 GAGACGCGACGTGTGACC 60.800 66.667 20.29 4.61 41.37 4.02
1133 1157 4.754667 GGGACGACAAGGACCCGC 62.755 72.222 0.00 0.00 32.74 6.13
1173 1197 2.223711 CGCCCTTTTAAAATGGATCGGG 60.224 50.000 22.18 17.82 0.00 5.14
1249 1273 1.662438 CTCGCTCCTTCCTTCGCTCT 61.662 60.000 0.00 0.00 0.00 4.09
1254 1278 0.461163 GCTTCCTCGCTCCTTCCTTC 60.461 60.000 0.00 0.00 0.00 3.46
1297 1321 0.037975 CCTTCCATGCACAGCAAACC 60.038 55.000 0.00 0.00 43.62 3.27
1303 1327 3.136123 CGCCCCTTCCATGCACAG 61.136 66.667 0.00 0.00 0.00 3.66
1340 1364 3.117452 GCCATGCCCTCTCCTCCTG 62.117 68.421 0.00 0.00 0.00 3.86
1514 1538 0.038892 TCACGGCGTACCTTCTTCAC 60.039 55.000 14.22 0.00 0.00 3.18
1582 1606 1.985159 AGCAGACAAACATCCCCTGTA 59.015 47.619 0.00 0.00 36.98 2.74
1634 1666 8.129211 GTGCTACATCTTGTAAGAACTTTGTTT 58.871 33.333 0.00 0.00 38.77 2.83
1656 1701 1.202639 TCAGATGAACAACCGTGTGCT 60.203 47.619 0.00 0.00 38.27 4.40
1657 1702 1.225855 TCAGATGAACAACCGTGTGC 58.774 50.000 0.00 0.00 38.27 4.57
1658 1703 4.488126 AATTCAGATGAACAACCGTGTG 57.512 40.909 0.00 0.00 38.27 3.82
1659 1704 4.792704 GCAAATTCAGATGAACAACCGTGT 60.793 41.667 0.00 0.00 40.75 4.49
1660 1705 3.670055 GCAAATTCAGATGAACAACCGTG 59.330 43.478 0.00 0.00 36.80 4.94
1661 1706 3.317711 TGCAAATTCAGATGAACAACCGT 59.682 39.130 0.00 0.00 36.80 4.83
1662 1707 3.899734 TGCAAATTCAGATGAACAACCG 58.100 40.909 0.00 0.00 36.80 4.44
1663 1708 4.022068 TCCTGCAAATTCAGATGAACAACC 60.022 41.667 0.00 0.00 36.80 3.77
1664 1709 5.125100 TCCTGCAAATTCAGATGAACAAC 57.875 39.130 0.00 0.00 36.80 3.32
1665 1710 4.321452 GCTCCTGCAAATTCAGATGAACAA 60.321 41.667 0.00 0.00 36.63 2.83
1666 1711 3.192001 GCTCCTGCAAATTCAGATGAACA 59.808 43.478 0.00 0.00 36.63 3.18
1667 1712 3.442977 AGCTCCTGCAAATTCAGATGAAC 59.557 43.478 0.00 0.00 42.74 3.18
1668 1713 3.693807 AGCTCCTGCAAATTCAGATGAA 58.306 40.909 0.00 0.00 42.74 2.57
1756 1801 3.031736 CACTAGATTTCTCGAGGGGGAA 58.968 50.000 13.56 3.40 0.00 3.97
1822 1867 3.200593 GAGCTGGTGCGCATCCTG 61.201 66.667 19.88 21.51 45.42 3.86
1906 1951 3.680156 GCCGTTGGCCATCTTGAA 58.320 55.556 6.09 0.00 44.06 2.69
1983 2028 5.187967 AGAATTAGTACCTGGGAGAGTGTTG 59.812 44.000 0.00 0.00 0.00 3.33
1995 2040 2.711547 GGGGCCATGAGAATTAGTACCT 59.288 50.000 4.39 0.00 0.00 3.08
2013 2058 5.174037 TCATGGTAGAACTGTAAAAGGGG 57.826 43.478 0.00 0.00 0.00 4.79
2015 2060 8.576442 ACATTTTCATGGTAGAACTGTAAAAGG 58.424 33.333 0.00 0.00 34.27 3.11
2021 2066 5.630121 TCCACATTTTCATGGTAGAACTGT 58.370 37.500 0.00 0.00 37.27 3.55
2032 2077 6.243900 ACAGTCTCTTCATCCACATTTTCAT 58.756 36.000 0.00 0.00 0.00 2.57
2040 2085 4.887748 TCTGAAACAGTCTCTTCATCCAC 58.112 43.478 0.00 0.00 31.40 4.02
2042 2087 5.146010 ACTCTGAAACAGTCTCTTCATCC 57.854 43.478 0.00 0.00 31.40 3.51
2043 2088 6.703607 TGAAACTCTGAAACAGTCTCTTCATC 59.296 38.462 0.00 0.00 31.40 2.92
2045 2090 5.977635 TGAAACTCTGAAACAGTCTCTTCA 58.022 37.500 0.00 0.00 32.61 3.02
2046 2091 6.481644 ACATGAAACTCTGAAACAGTCTCTTC 59.518 38.462 0.00 0.00 32.61 2.87
2065 2126 9.659135 AGGATTTCATATGGGATTTTACATGAA 57.341 29.630 0.00 0.00 32.22 2.57
2075 2136 4.074970 GCGACAAGGATTTCATATGGGAT 58.925 43.478 2.13 0.00 0.00 3.85
2077 2138 3.480470 AGCGACAAGGATTTCATATGGG 58.520 45.455 2.13 0.00 0.00 4.00
2139 2200 2.500509 GTGAGTTCCTCCTCGCTATG 57.499 55.000 0.00 0.00 38.61 2.23
2163 2224 4.214332 CCCTTTCTTTTCTCGAGAAACCTG 59.786 45.833 34.29 26.12 43.01 4.00
2238 2302 5.027293 AGCAAGTTTCTGAAGGCATTTTT 57.973 34.783 0.00 0.00 0.00 1.94
2245 2309 5.163953 CGTACATGTAGCAAGTTTCTGAAGG 60.164 44.000 5.62 0.00 0.00 3.46
2318 2382 3.247648 CCGATGAGCCGTTAATTTGGTAG 59.752 47.826 0.00 0.00 0.00 3.18
2387 2451 1.338020 CAGTTTGTCACTTCTTGGCCC 59.662 52.381 0.00 0.00 30.92 5.80
2444 2508 1.277557 GCCCTATAGATGTGGAGCCTG 59.722 57.143 0.00 0.00 0.00 4.85
2445 2509 1.132721 TGCCCTATAGATGTGGAGCCT 60.133 52.381 0.00 0.00 0.00 4.58
2453 2518 6.045318 CCGTAGATCAATTGCCCTATAGATG 58.955 44.000 0.00 0.00 0.00 2.90
2506 2571 3.779271 AGCTACGAGTAAACTACCTGC 57.221 47.619 0.00 0.00 0.00 4.85
2508 2573 5.972107 TCAAAGCTACGAGTAAACTACCT 57.028 39.130 0.00 0.00 0.00 3.08
2584 2687 9.313118 CAGACGGCATATGCTTAAATACATATA 57.687 33.333 26.12 0.00 37.37 0.86
2759 2871 3.405170 AAATAATCAAGGAACGCGCTG 57.595 42.857 5.73 1.02 0.00 5.18
2760 2872 5.751243 ATAAAATAATCAAGGAACGCGCT 57.249 34.783 5.73 0.00 0.00 5.92
2788 2900 4.042809 TGAATCAGGGGACTAGCTCAAAAA 59.957 41.667 0.00 0.00 40.21 1.94
2793 2905 2.549778 GCATGAATCAGGGGACTAGCTC 60.550 54.545 0.00 0.00 40.21 4.09
2796 2908 2.437281 ACTGCATGAATCAGGGGACTAG 59.563 50.000 0.00 0.00 40.21 2.57
2818 2930 5.278315 GCCCATGTAAGAAAAGAAAACGAGT 60.278 40.000 0.00 0.00 0.00 4.18
2822 2934 4.686091 GCAGCCCATGTAAGAAAAGAAAAC 59.314 41.667 0.00 0.00 0.00 2.43
2827 2939 3.084039 TGAGCAGCCCATGTAAGAAAAG 58.916 45.455 0.00 0.00 0.00 2.27
2828 2940 3.084039 CTGAGCAGCCCATGTAAGAAAA 58.916 45.455 0.00 0.00 0.00 2.29
2829 2941 2.040278 ACTGAGCAGCCCATGTAAGAAA 59.960 45.455 0.00 0.00 0.00 2.52
2838 2950 0.694771 ATCTCAAACTGAGCAGCCCA 59.305 50.000 0.00 0.00 43.95 5.36
2871 2983 3.690460 AGGGGTAGCAGAAGTTCAATTG 58.310 45.455 5.50 0.00 0.00 2.32
3153 3270 9.684448 TTGTTGCGTTGAAATATTTATCTTTCA 57.316 25.926 0.00 0.00 39.06 2.69
3232 3349 9.180678 ACGTGACAATAAGTTGAATTCAAATTC 57.819 29.630 30.67 19.54 42.25 2.17
3244 3364 6.759827 ACAACTAGAACACGTGACAATAAGTT 59.240 34.615 25.01 18.47 0.00 2.66
3246 3366 6.128902 GGACAACTAGAACACGTGACAATAAG 60.129 42.308 25.01 13.26 0.00 1.73
3253 3373 5.184287 TCATATGGACAACTAGAACACGTGA 59.816 40.000 25.01 0.00 0.00 4.35
3270 3390 2.595124 TATGCGGGCGTATCATATGG 57.405 50.000 2.13 0.00 0.00 2.74
3300 3420 6.770746 ACTCATGAGCAGCTTCAAATTATT 57.229 33.333 22.83 0.00 0.00 1.40
3304 3424 3.442977 GGAACTCATGAGCAGCTTCAAAT 59.557 43.478 22.83 0.00 0.00 2.32
3361 3482 3.563808 CAGAATCCAACAACGTTTGAGGA 59.436 43.478 12.99 12.99 40.56 3.71
3369 3490 2.807967 TCTGAAGCAGAATCCAACAACG 59.192 45.455 0.00 0.00 37.57 4.10
3385 3506 2.501723 GTGGTCCTATCCAGCTTCTGAA 59.498 50.000 0.00 0.00 38.23 3.02
3403 3524 5.363939 GTCTAGATTTCAAGAGATGGGTGG 58.636 45.833 0.00 0.00 0.00 4.61
3422 3544 0.252103 AGGGAGTTCGCCAAGGTCTA 60.252 55.000 0.00 0.00 0.00 2.59
3430 3552 1.251527 TGAGAGTGAGGGAGTTCGCC 61.252 60.000 0.00 0.00 0.00 5.54
3433 3555 2.693074 GAGGATGAGAGTGAGGGAGTTC 59.307 54.545 0.00 0.00 0.00 3.01
3448 3570 4.141642 TGGACAATATGACTGTGGAGGATG 60.142 45.833 0.00 0.00 0.00 3.51
3451 3573 3.912496 TGGACAATATGACTGTGGAGG 57.088 47.619 0.00 0.00 0.00 4.30
3478 3600 7.567250 TGTTCTAGGGGATGATGACAACTTATA 59.433 37.037 0.00 0.00 0.00 0.98
3479 3601 6.386927 TGTTCTAGGGGATGATGACAACTTAT 59.613 38.462 0.00 0.00 0.00 1.73
3493 3615 4.756564 AGATGCATAGATGTTCTAGGGGA 58.243 43.478 0.00 0.00 31.92 4.81
3495 3617 5.735285 TGAGATGCATAGATGTTCTAGGG 57.265 43.478 0.00 0.00 31.92 3.53
3508 3630 4.649692 CCCTGCTAAACTATGAGATGCAT 58.350 43.478 0.00 0.00 41.08 3.96
3516 3638 3.281727 TTGAGGCCCTGCTAAACTATG 57.718 47.619 0.00 0.00 0.00 2.23
3528 3650 4.600692 ATTTTGTAGTTGTTTGAGGCCC 57.399 40.909 0.00 0.00 0.00 5.80
3530 3652 5.048013 AGCCTATTTTGTAGTTGTTTGAGGC 60.048 40.000 0.00 0.00 44.90 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.