Multiple sequence alignment - TraesCS5A01G212500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G212500 chr5A 100.000 5498 0 0 1 5498 427826381 427820884 0.000000e+00 10154.0
1 TraesCS5A01G212500 chr5A 83.146 89 13 1 3893 3979 511878160 511878248 4.570000e-11 80.5
2 TraesCS5A01G212500 chr5D 93.561 2050 78 23 1768 3778 328721399 328723433 0.000000e+00 3005.0
3 TraesCS5A01G212500 chr5D 90.512 1328 73 13 495 1781 328719961 328721276 0.000000e+00 1705.0
4 TraesCS5A01G212500 chr5D 90.452 995 44 27 3974 4929 328723752 328724734 0.000000e+00 1264.0
5 TraesCS5A01G212500 chr5D 87.255 306 19 4 1 306 328714891 328715176 1.140000e-86 331.0
6 TraesCS5A01G212500 chr5D 83.183 333 23 17 5165 5487 328724837 328725146 1.950000e-69 274.0
7 TraesCS5A01G212500 chr5B 92.915 1863 76 18 1957 3778 382077847 382079694 0.000000e+00 2658.0
8 TraesCS5A01G212500 chr5B 85.222 1597 126 53 3958 5487 382079840 382081393 0.000000e+00 1541.0
9 TraesCS5A01G212500 chr5B 88.734 719 47 17 576 1272 382075857 382076563 0.000000e+00 848.0
10 TraesCS5A01G212500 chr5B 93.333 510 30 2 1274 1781 382076988 382077495 0.000000e+00 750.0
11 TraesCS5A01G212500 chr5B 90.909 363 30 2 1 363 382075385 382075744 8.280000e-133 484.0
12 TraesCS5A01G212500 chr5B 95.918 196 4 4 1768 1959 382077620 382077815 1.150000e-81 315.0
13 TraesCS5A01G212500 chr6B 92.000 75 3 3 3892 3964 605797269 605797342 9.740000e-18 102.0
14 TraesCS5A01G212500 chr1A 90.909 77 6 1 3893 3968 225509568 225509492 9.740000e-18 102.0
15 TraesCS5A01G212500 chr4A 88.750 80 5 3 3893 3972 624117290 624117365 1.630000e-15 95.3
16 TraesCS5A01G212500 chr4A 86.667 75 8 1 3893 3965 1897684 1897758 1.270000e-11 82.4
17 TraesCS5A01G212500 chr1B 90.411 73 6 1 3892 3964 193625348 193625419 1.630000e-15 95.3
18 TraesCS5A01G212500 chr1B 84.524 84 7 3 3892 3974 269041823 269041901 1.640000e-10 78.7
19 TraesCS5A01G212500 chr7D 87.500 72 5 4 3893 3964 126049203 126049136 4.570000e-11 80.5
20 TraesCS5A01G212500 chr3A 84.524 84 7 3 3890 3967 469414717 469414634 1.640000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G212500 chr5A 427820884 427826381 5497 True 10154.000000 10154 100.000000 1 5498 1 chr5A.!!$R1 5497
1 TraesCS5A01G212500 chr5D 328719961 328725146 5185 False 1562.000000 3005 89.427000 495 5487 4 chr5D.!!$F2 4992
2 TraesCS5A01G212500 chr5B 382075385 382081393 6008 False 1099.333333 2658 91.171833 1 5487 6 chr5B.!!$F1 5486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
440 458 0.036010 CATCACCAGACGAAAGGGCT 60.036 55.000 0.00 0.0 0.00 5.19 F
1393 1901 1.006519 AGCCTTAGGTCTGAGAGAGCA 59.993 52.381 0.00 0.0 44.69 4.26 F
2055 2743 0.247460 GTGCAATCCCTGGCCTTTTC 59.753 55.000 3.32 0.0 0.00 2.29 F
3249 3960 0.538584 CAGGCTCACCATGCTCAGTA 59.461 55.000 0.00 0.0 39.06 2.74 F
3808 4580 0.752658 AAGACTTGTTTTGCCCTGCC 59.247 50.000 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1826 2479 0.759060 GTTCCTTGCCACCTGGGTTT 60.759 55.000 0.00 0.0 39.65 3.27 R
3253 3964 1.658596 TCACGATGCAAATAGTCGCAC 59.341 47.619 6.57 0.0 41.79 5.34 R
3950 4734 0.614134 AAGTGGTACTCCCTCCGTCC 60.614 60.000 0.00 0.0 0.00 4.79 R
4073 5008 0.033601 TTGGCACCACAGTTGAAGGT 60.034 50.000 0.00 0.0 35.65 3.50 R
5448 6467 0.167033 CGTGGAGACAGACAGAGACG 59.833 60.000 0.00 0.0 44.46 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.594603 AGTGAAATCTACCACTCCACG 57.405 47.619 0.00 0.00 39.19 4.94
75 76 6.074088 CGTTAGTAGATCACCTCAATGAATGC 60.074 42.308 0.00 0.00 30.82 3.56
84 85 4.646040 CACCTCAATGAATGCCCAAAGATA 59.354 41.667 0.00 0.00 0.00 1.98
100 101 6.176183 CCAAAGATACAGAGTGAAGGTGAAT 58.824 40.000 0.00 0.00 0.00 2.57
102 103 6.611613 AAGATACAGAGTGAAGGTGAATCA 57.388 37.500 0.00 0.00 0.00 2.57
122 123 2.792674 CACTTTGTTTGCTGTGCTGATG 59.207 45.455 0.00 0.00 0.00 3.07
129 130 2.176273 GCTGTGCTGATGCCCGTAG 61.176 63.158 0.00 0.00 38.71 3.51
136 137 1.009829 CTGATGCCCGTAGTTTCTGC 58.990 55.000 0.00 0.00 0.00 4.26
139 140 1.026718 ATGCCCGTAGTTTCTGCTGC 61.027 55.000 0.00 0.00 0.00 5.25
140 141 1.376037 GCCCGTAGTTTCTGCTGCT 60.376 57.895 0.00 0.00 0.00 4.24
182 183 2.589798 CCAAATGCTCGATGGCAAAT 57.410 45.000 3.24 0.00 45.68 2.32
211 212 1.118356 AAGCAATTGCCCCACCGAAA 61.118 50.000 26.45 0.00 43.38 3.46
249 250 5.998981 ACATACTTGTGAACGGGTGAAAATA 59.001 36.000 0.00 0.00 33.85 1.40
250 251 6.487331 ACATACTTGTGAACGGGTGAAAATAA 59.513 34.615 0.00 0.00 33.85 1.40
310 311 6.073447 ACAGTTGTGGATGATTATGGGTAA 57.927 37.500 0.00 0.00 0.00 2.85
353 354 4.503123 CCGGGCTATGTGAGTGAATATTCA 60.503 45.833 14.23 14.23 34.20 2.57
381 399 4.603131 ACTCCCAATATTGTGCATCAGTT 58.397 39.130 14.25 0.00 0.00 3.16
382 400 5.018809 ACTCCCAATATTGTGCATCAGTTT 58.981 37.500 14.25 0.00 0.00 2.66
383 401 5.126061 ACTCCCAATATTGTGCATCAGTTTC 59.874 40.000 14.25 0.00 0.00 2.78
384 402 5.263599 TCCCAATATTGTGCATCAGTTTCT 58.736 37.500 14.25 0.00 0.00 2.52
385 403 5.716228 TCCCAATATTGTGCATCAGTTTCTT 59.284 36.000 14.25 0.00 0.00 2.52
386 404 6.038356 CCCAATATTGTGCATCAGTTTCTTC 58.962 40.000 14.25 0.00 0.00 2.87
387 405 6.127535 CCCAATATTGTGCATCAGTTTCTTCT 60.128 38.462 14.25 0.00 0.00 2.85
388 406 6.750501 CCAATATTGTGCATCAGTTTCTTCTG 59.249 38.462 14.25 0.00 36.85 3.02
389 407 7.310664 CAATATTGTGCATCAGTTTCTTCTGT 58.689 34.615 7.32 0.00 36.85 3.41
390 408 8.453320 CAATATTGTGCATCAGTTTCTTCTGTA 58.547 33.333 7.32 0.00 36.85 2.74
391 409 6.882610 ATTGTGCATCAGTTTCTTCTGTAA 57.117 33.333 0.00 0.00 36.85 2.41
392 410 6.691754 TTGTGCATCAGTTTCTTCTGTAAA 57.308 33.333 0.00 0.00 36.85 2.01
393 411 6.060028 TGTGCATCAGTTTCTTCTGTAAAC 57.940 37.500 0.00 0.00 37.14 2.01
394 412 5.822519 TGTGCATCAGTTTCTTCTGTAAACT 59.177 36.000 0.00 0.00 45.64 2.66
395 413 6.989759 TGTGCATCAGTTTCTTCTGTAAACTA 59.010 34.615 0.00 0.00 43.52 2.24
396 414 7.171508 TGTGCATCAGTTTCTTCTGTAAACTAG 59.828 37.037 0.00 0.00 43.52 2.57
397 415 6.650807 TGCATCAGTTTCTTCTGTAAACTAGG 59.349 38.462 1.24 0.00 43.52 3.02
398 416 6.651225 GCATCAGTTTCTTCTGTAAACTAGGT 59.349 38.462 1.24 0.00 43.52 3.08
399 417 7.173390 GCATCAGTTTCTTCTGTAAACTAGGTT 59.827 37.037 0.00 0.00 43.52 3.50
400 418 8.713271 CATCAGTTTCTTCTGTAAACTAGGTTC 58.287 37.037 0.00 0.00 43.52 3.62
401 419 7.788026 TCAGTTTCTTCTGTAAACTAGGTTCA 58.212 34.615 0.00 0.00 43.52 3.18
402 420 8.429641 TCAGTTTCTTCTGTAAACTAGGTTCAT 58.570 33.333 0.00 0.00 43.52 2.57
403 421 9.057089 CAGTTTCTTCTGTAAACTAGGTTCATT 57.943 33.333 0.00 0.00 43.52 2.57
404 422 9.628500 AGTTTCTTCTGTAAACTAGGTTCATTT 57.372 29.630 0.00 0.00 43.54 2.32
405 423 9.665264 GTTTCTTCTGTAAACTAGGTTCATTTG 57.335 33.333 0.00 0.00 34.66 2.32
406 424 8.974060 TTCTTCTGTAAACTAGGTTCATTTGT 57.026 30.769 0.00 0.00 0.00 2.83
407 425 8.378172 TCTTCTGTAAACTAGGTTCATTTGTG 57.622 34.615 0.00 0.00 0.00 3.33
408 426 7.990886 TCTTCTGTAAACTAGGTTCATTTGTGT 59.009 33.333 0.00 0.00 0.00 3.72
409 427 9.268268 CTTCTGTAAACTAGGTTCATTTGTGTA 57.732 33.333 0.00 0.00 0.00 2.90
410 428 8.597662 TCTGTAAACTAGGTTCATTTGTGTAC 57.402 34.615 0.00 0.00 0.00 2.90
411 429 8.205512 TCTGTAAACTAGGTTCATTTGTGTACA 58.794 33.333 0.00 0.00 32.50 2.90
412 430 8.734218 TGTAAACTAGGTTCATTTGTGTACAA 57.266 30.769 0.00 0.00 31.03 2.41
413 431 9.344772 TGTAAACTAGGTTCATTTGTGTACAAT 57.655 29.630 0.00 0.00 35.55 2.71
414 432 9.821662 GTAAACTAGGTTCATTTGTGTACAATC 57.178 33.333 0.00 0.00 35.55 2.67
415 433 8.691661 AAACTAGGTTCATTTGTGTACAATCT 57.308 30.769 0.00 0.00 35.55 2.40
416 434 8.691661 AACTAGGTTCATTTGTGTACAATCTT 57.308 30.769 0.00 0.00 35.55 2.40
417 435 8.691661 ACTAGGTTCATTTGTGTACAATCTTT 57.308 30.769 0.00 0.00 35.55 2.52
418 436 8.567948 ACTAGGTTCATTTGTGTACAATCTTTG 58.432 33.333 0.00 0.00 35.55 2.77
419 437 6.748132 AGGTTCATTTGTGTACAATCTTTGG 58.252 36.000 0.00 0.00 35.55 3.28
420 438 5.925969 GGTTCATTTGTGTACAATCTTTGGG 59.074 40.000 0.00 0.00 35.55 4.12
421 439 5.132897 TCATTTGTGTACAATCTTTGGGC 57.867 39.130 0.00 0.00 35.55 5.36
422 440 4.586421 TCATTTGTGTACAATCTTTGGGCA 59.414 37.500 0.00 0.00 35.55 5.36
423 441 5.245751 TCATTTGTGTACAATCTTTGGGCAT 59.754 36.000 0.00 0.00 35.55 4.40
424 442 4.782019 TTGTGTACAATCTTTGGGCATC 57.218 40.909 0.00 0.00 34.12 3.91
425 443 3.760738 TGTGTACAATCTTTGGGCATCA 58.239 40.909 0.00 0.00 34.12 3.07
426 444 3.505680 TGTGTACAATCTTTGGGCATCAC 59.494 43.478 0.00 0.00 34.12 3.06
427 445 3.088532 TGTACAATCTTTGGGCATCACC 58.911 45.455 0.00 0.00 37.93 4.02
428 446 2.307496 ACAATCTTTGGGCATCACCA 57.693 45.000 0.00 0.00 42.05 4.17
429 447 2.173519 ACAATCTTTGGGCATCACCAG 58.826 47.619 0.00 0.00 42.47 4.00
430 448 2.225091 ACAATCTTTGGGCATCACCAGA 60.225 45.455 0.00 0.00 42.47 3.86
431 449 2.134789 ATCTTTGGGCATCACCAGAC 57.865 50.000 0.00 0.00 42.47 3.51
432 450 0.321564 TCTTTGGGCATCACCAGACG 60.322 55.000 0.00 0.00 42.47 4.18
433 451 0.321564 CTTTGGGCATCACCAGACGA 60.322 55.000 0.00 0.00 42.47 4.20
434 452 0.109532 TTTGGGCATCACCAGACGAA 59.890 50.000 0.00 0.00 42.47 3.85
435 453 0.109532 TTGGGCATCACCAGACGAAA 59.890 50.000 0.00 0.00 42.47 3.46
436 454 0.321564 TGGGCATCACCAGACGAAAG 60.322 55.000 0.00 0.00 42.05 2.62
437 455 1.026718 GGGCATCACCAGACGAAAGG 61.027 60.000 0.00 0.00 42.05 3.11
438 456 1.026718 GGCATCACCAGACGAAAGGG 61.027 60.000 0.00 0.00 38.86 3.95
439 457 1.648467 GCATCACCAGACGAAAGGGC 61.648 60.000 0.00 0.00 0.00 5.19
440 458 0.036010 CATCACCAGACGAAAGGGCT 60.036 55.000 0.00 0.00 0.00 5.19
441 459 1.207089 CATCACCAGACGAAAGGGCTA 59.793 52.381 0.00 0.00 0.00 3.93
442 460 1.568504 TCACCAGACGAAAGGGCTAT 58.431 50.000 0.00 0.00 0.00 2.97
443 461 1.207089 TCACCAGACGAAAGGGCTATG 59.793 52.381 0.00 0.00 0.00 2.23
444 462 1.066143 CACCAGACGAAAGGGCTATGT 60.066 52.381 0.00 0.00 0.00 2.29
445 463 2.167693 CACCAGACGAAAGGGCTATGTA 59.832 50.000 0.00 0.00 0.00 2.29
446 464 2.431057 ACCAGACGAAAGGGCTATGTAG 59.569 50.000 0.00 0.00 0.00 2.74
447 465 2.431057 CCAGACGAAAGGGCTATGTAGT 59.569 50.000 0.00 0.00 0.00 2.73
448 466 3.448686 CAGACGAAAGGGCTATGTAGTG 58.551 50.000 0.00 0.00 0.00 2.74
449 467 3.130516 CAGACGAAAGGGCTATGTAGTGA 59.869 47.826 0.00 0.00 0.00 3.41
450 468 3.961408 AGACGAAAGGGCTATGTAGTGAT 59.039 43.478 0.00 0.00 0.00 3.06
451 469 4.406003 AGACGAAAGGGCTATGTAGTGATT 59.594 41.667 0.00 0.00 0.00 2.57
452 470 5.597182 AGACGAAAGGGCTATGTAGTGATTA 59.403 40.000 0.00 0.00 0.00 1.75
453 471 6.267928 AGACGAAAGGGCTATGTAGTGATTAT 59.732 38.462 0.00 0.00 0.00 1.28
454 472 7.450634 AGACGAAAGGGCTATGTAGTGATTATA 59.549 37.037 0.00 0.00 0.00 0.98
455 473 8.135382 ACGAAAGGGCTATGTAGTGATTATAT 57.865 34.615 0.00 0.00 0.00 0.86
456 474 8.251721 ACGAAAGGGCTATGTAGTGATTATATC 58.748 37.037 0.00 0.00 0.00 1.63
457 475 8.470805 CGAAAGGGCTATGTAGTGATTATATCT 58.529 37.037 0.00 0.00 0.00 1.98
458 476 9.810545 GAAAGGGCTATGTAGTGATTATATCTC 57.189 37.037 0.00 0.00 0.00 2.75
459 477 8.901472 AAGGGCTATGTAGTGATTATATCTCA 57.099 34.615 0.00 0.00 0.00 3.27
460 478 9.499369 AAGGGCTATGTAGTGATTATATCTCAT 57.501 33.333 0.00 0.00 0.00 2.90
461 479 9.499369 AGGGCTATGTAGTGATTATATCTCATT 57.501 33.333 0.00 0.00 0.00 2.57
476 494 9.681062 TTATATCTCATTTAATTCGGGAATCCC 57.319 33.333 8.64 8.64 41.09 3.85
477 495 5.646692 TCTCATTTAATTCGGGAATCCCT 57.353 39.130 17.45 0.00 42.67 4.20
478 496 6.013554 TCTCATTTAATTCGGGAATCCCTT 57.986 37.500 17.45 6.64 42.67 3.95
479 497 6.431722 TCTCATTTAATTCGGGAATCCCTTT 58.568 36.000 17.45 9.68 42.67 3.11
480 498 6.321181 TCTCATTTAATTCGGGAATCCCTTTG 59.679 38.462 17.45 0.53 42.67 2.77
481 499 5.955355 TCATTTAATTCGGGAATCCCTTTGT 59.045 36.000 17.45 1.76 42.67 2.83
482 500 6.439058 TCATTTAATTCGGGAATCCCTTTGTT 59.561 34.615 17.45 8.33 42.67 2.83
483 501 6.673839 TTTAATTCGGGAATCCCTTTGTTT 57.326 33.333 17.45 5.55 42.67 2.83
484 502 4.535526 AATTCGGGAATCCCTTTGTTTG 57.464 40.909 17.45 0.00 42.67 2.93
485 503 2.668144 TCGGGAATCCCTTTGTTTGT 57.332 45.000 17.45 0.00 42.67 2.83
486 504 2.952116 TCGGGAATCCCTTTGTTTGTT 58.048 42.857 17.45 0.00 42.67 2.83
487 505 3.301274 TCGGGAATCCCTTTGTTTGTTT 58.699 40.909 17.45 0.00 42.67 2.83
488 506 3.068873 TCGGGAATCCCTTTGTTTGTTTG 59.931 43.478 17.45 0.00 42.67 2.93
489 507 3.068873 CGGGAATCCCTTTGTTTGTTTGA 59.931 43.478 17.45 0.00 42.67 2.69
490 508 4.262420 CGGGAATCCCTTTGTTTGTTTGAT 60.262 41.667 17.45 0.00 42.67 2.57
491 509 5.047660 CGGGAATCCCTTTGTTTGTTTGATA 60.048 40.000 17.45 0.00 42.67 2.15
492 510 6.398095 GGGAATCCCTTTGTTTGTTTGATAG 58.602 40.000 11.95 0.00 41.34 2.08
493 511 6.014584 GGGAATCCCTTTGTTTGTTTGATAGT 60.015 38.462 11.95 0.00 41.34 2.12
494 512 7.441836 GGAATCCCTTTGTTTGTTTGATAGTT 58.558 34.615 0.00 0.00 0.00 2.24
495 513 7.384932 GGAATCCCTTTGTTTGTTTGATAGTTG 59.615 37.037 0.00 0.00 0.00 3.16
496 514 7.595819 ATCCCTTTGTTTGTTTGATAGTTGA 57.404 32.000 0.00 0.00 0.00 3.18
505 523 7.860373 TGTTTGTTTGATAGTTGACTTATGTGC 59.140 33.333 0.00 0.00 0.00 4.57
518 536 5.643348 TGACTTATGTGCGATCATTCAGTTT 59.357 36.000 0.00 0.00 0.00 2.66
521 539 1.878734 TGTGCGATCATTCAGTTTGCA 59.121 42.857 0.00 0.00 34.66 4.08
522 540 2.292845 TGTGCGATCATTCAGTTTGCAA 59.707 40.909 0.00 0.00 37.91 4.08
529 547 5.510674 CGATCATTCAGTTTGCAATCAAGTC 59.489 40.000 10.05 0.00 33.12 3.01
532 555 4.472691 TTCAGTTTGCAATCAAGTCTCG 57.527 40.909 10.05 0.00 33.12 4.04
542 565 6.569780 TGCAATCAAGTCTCGCTTAAGTATA 58.430 36.000 4.02 0.00 35.27 1.47
559 592 9.769093 CTTAAGTATACAATTTTCCCGAGTTTG 57.231 33.333 5.50 0.00 0.00 2.93
567 600 6.127281 ACAATTTTCCCGAGTTTGTTTTAGGT 60.127 34.615 0.00 0.00 0.00 3.08
568 601 7.068470 ACAATTTTCCCGAGTTTGTTTTAGGTA 59.932 33.333 0.00 0.00 0.00 3.08
569 602 7.585579 ATTTTCCCGAGTTTGTTTTAGGTAA 57.414 32.000 0.00 0.00 0.00 2.85
570 603 7.585579 TTTTCCCGAGTTTGTTTTAGGTAAT 57.414 32.000 0.00 0.00 0.00 1.89
571 604 6.806388 TTCCCGAGTTTGTTTTAGGTAATC 57.194 37.500 0.00 0.00 0.00 1.75
572 605 5.247862 TCCCGAGTTTGTTTTAGGTAATCC 58.752 41.667 0.00 0.00 0.00 3.01
573 606 5.005094 CCCGAGTTTGTTTTAGGTAATCCA 58.995 41.667 0.00 0.00 35.89 3.41
574 607 5.474189 CCCGAGTTTGTTTTAGGTAATCCAA 59.526 40.000 0.00 0.00 35.89 3.53
575 608 6.152154 CCCGAGTTTGTTTTAGGTAATCCAAT 59.848 38.462 0.00 0.00 35.89 3.16
576 609 7.309560 CCCGAGTTTGTTTTAGGTAATCCAATT 60.310 37.037 0.00 0.00 35.89 2.32
577 610 8.085909 CCGAGTTTGTTTTAGGTAATCCAATTT 58.914 33.333 0.00 0.00 35.89 1.82
578 611 9.471084 CGAGTTTGTTTTAGGTAATCCAATTTT 57.529 29.630 0.00 0.00 35.89 1.82
614 647 1.539827 GGTTTGGTTAAGCGTCTGCAT 59.460 47.619 0.00 0.00 46.23 3.96
631 664 4.704540 TCTGCATTCCATCCGTAACATTTT 59.295 37.500 0.00 0.00 0.00 1.82
633 666 5.406649 TGCATTCCATCCGTAACATTTTTC 58.593 37.500 0.00 0.00 0.00 2.29
635 668 5.743872 GCATTCCATCCGTAACATTTTTCTC 59.256 40.000 0.00 0.00 0.00 2.87
645 679 7.335924 TCCGTAACATTTTTCTCCCTTTCATAG 59.664 37.037 0.00 0.00 0.00 2.23
656 690 1.490490 CCTTTCATAGTGGGCTAGGCA 59.510 52.381 19.14 1.31 0.00 4.75
709 743 4.483243 GGCCCGAAGCGATTCCCA 62.483 66.667 8.00 0.00 45.17 4.37
710 744 2.897350 GCCCGAAGCGATTCCCAG 60.897 66.667 8.00 0.00 0.00 4.45
711 745 2.897350 CCCGAAGCGATTCCCAGC 60.897 66.667 8.00 0.00 0.00 4.85
753 811 2.398588 TCTTCTAGAACCATCCGGCAT 58.601 47.619 0.00 0.00 34.57 4.40
754 812 2.365617 TCTTCTAGAACCATCCGGCATC 59.634 50.000 0.00 0.00 34.57 3.91
755 813 1.048601 TCTAGAACCATCCGGCATCC 58.951 55.000 0.00 0.00 34.57 3.51
756 814 1.051812 CTAGAACCATCCGGCATCCT 58.948 55.000 0.00 0.00 34.57 3.24
809 867 5.360999 ACAAAATCCTTATCCCAAGCTTAGC 59.639 40.000 0.00 0.00 0.00 3.09
810 868 4.796110 AATCCTTATCCCAAGCTTAGCA 57.204 40.909 7.07 0.00 0.00 3.49
811 869 5.330648 AATCCTTATCCCAAGCTTAGCAT 57.669 39.130 7.07 0.00 0.00 3.79
1209 1292 4.335594 GGCCACAAATTGTCAGATACTACC 59.664 45.833 0.00 0.00 0.00 3.18
1217 1300 8.969267 CAAATTGTCAGATACTACCGTCTATTC 58.031 37.037 0.00 0.00 0.00 1.75
1306 1812 2.541466 AGGGTGTAGGAGAGGAAACTG 58.459 52.381 0.00 0.00 44.43 3.16
1307 1813 1.066071 GGGTGTAGGAGAGGAAACTGC 60.066 57.143 0.00 0.00 44.43 4.40
1393 1901 1.006519 AGCCTTAGGTCTGAGAGAGCA 59.993 52.381 0.00 0.00 44.69 4.26
1426 1934 5.597813 ACTCGTTAAGAATTGCTTGTCAG 57.402 39.130 0.00 0.00 37.42 3.51
1431 1939 6.650807 TCGTTAAGAATTGCTTGTCAGAAGAT 59.349 34.615 0.00 0.00 37.42 2.40
1543 2052 8.514594 CCTTCATATGTTGTTTCTGTTGTACAT 58.485 33.333 1.90 0.00 0.00 2.29
1698 2209 7.465353 TTTCTGATGCAAATCCTTCAATGTA 57.535 32.000 0.00 0.00 0.00 2.29
1713 2224 5.675684 TCAATGTAGTTACTGCAGATCCA 57.324 39.130 23.35 8.12 28.38 3.41
1714 2225 6.239217 TCAATGTAGTTACTGCAGATCCAT 57.761 37.500 23.35 10.05 28.38 3.41
1826 2479 5.113383 ACTTTTGTGAGTCAATACGTGTGA 58.887 37.500 0.00 0.00 35.84 3.58
1932 2585 4.929808 GCTACAGCTTTCTGCAGTTTACTA 59.070 41.667 14.67 0.00 44.10 1.82
1933 2586 5.408604 GCTACAGCTTTCTGCAGTTTACTAA 59.591 40.000 14.67 0.00 44.10 2.24
1961 2648 7.448161 CACACCATATCACCCACATTATATTGT 59.552 37.037 0.00 0.00 0.00 2.71
2031 2719 9.262358 GTGATACTGTTTAAACTTCTGAGAACT 57.738 33.333 18.72 0.00 0.00 3.01
2055 2743 0.247460 GTGCAATCCCTGGCCTTTTC 59.753 55.000 3.32 0.00 0.00 2.29
2059 2747 1.067635 CAATCCCTGGCCTTTTCGTTG 60.068 52.381 3.32 0.00 0.00 4.10
2310 3001 7.924541 TGTACCCTATTTGGTTGACTAAGATT 58.075 34.615 0.00 0.00 39.91 2.40
2512 3212 3.093057 AGACTACTCGCATGACCTCTTT 58.907 45.455 0.00 0.00 0.00 2.52
2534 3234 7.448777 TCTTTGTGGCCACAGTTTATGTTATTA 59.551 33.333 35.60 15.82 41.41 0.98
2637 3339 0.808453 TAAATACGCTGGCACCGAGC 60.808 55.000 9.51 0.00 44.65 5.03
2844 3553 6.094186 GTGTATTCAGATCCTTTCTTGGTTCC 59.906 42.308 0.00 0.00 29.93 3.62
2894 3604 7.232330 TGCATAGGCTATGTTATTGGCAAATAA 59.768 33.333 29.69 1.89 41.91 1.40
2940 3650 8.733458 ACGTTTAGAATATCGCACTATGGTATA 58.267 33.333 0.00 0.00 0.00 1.47
3072 3782 7.609532 AGCAACATAGAGCAAGAAAAATACTCT 59.390 33.333 0.00 0.00 40.65 3.24
3194 3905 1.546323 CCTGCTCTTTCTTTCTGCCCA 60.546 52.381 0.00 0.00 0.00 5.36
3234 3945 3.391296 TCCACTATGGTTCTATTCCAGGC 59.609 47.826 0.00 0.00 39.03 4.85
3249 3960 0.538584 CAGGCTCACCATGCTCAGTA 59.461 55.000 0.00 0.00 39.06 2.74
3253 3964 2.481854 GCTCACCATGCTCAGTATCTG 58.518 52.381 0.00 0.00 0.00 2.90
3266 3983 4.112634 TCAGTATCTGTGCGACTATTTGC 58.887 43.478 0.00 0.00 32.61 3.68
3350 4069 5.127031 GGAGCTAGATTCTCTATAGCCAAGG 59.873 48.000 0.00 0.00 42.32 3.61
3522 4255 1.351153 CGTCGAAAGAGAAGCCTTCC 58.649 55.000 0.00 0.00 43.49 3.46
3581 4314 4.065088 GCCGCAATTAATCAGATGACCTA 58.935 43.478 0.00 0.00 0.00 3.08
3610 4343 8.018537 TCATAACTGCTTATAGCCTCAAACTA 57.981 34.615 0.00 0.00 41.51 2.24
3666 4400 4.134563 GCACCCCTTCACATAATTATCGT 58.865 43.478 0.00 0.00 0.00 3.73
3684 4418 2.933906 TCGTTCTGTGAGGTGTTGTTTC 59.066 45.455 0.00 0.00 0.00 2.78
3693 4428 5.700832 TGTGAGGTGTTGTTTCTATGTGATC 59.299 40.000 0.00 0.00 0.00 2.92
3697 4432 7.004555 AGGTGTTGTTTCTATGTGATCTGTA 57.995 36.000 0.00 0.00 0.00 2.74
3765 4507 2.705658 AGGAACACCAGATCTGTGTTGA 59.294 45.455 30.92 0.00 40.81 3.18
3796 4568 5.406780 GTGATTAGTCAGTGACCAAGACTTG 59.593 44.000 19.71 8.31 42.25 3.16
3801 4573 4.396166 AGTCAGTGACCAAGACTTGTTTTG 59.604 41.667 19.71 1.39 39.45 2.44
3808 4580 0.752658 AAGACTTGTTTTGCCCTGCC 59.247 50.000 0.00 0.00 0.00 4.85
3809 4581 1.115326 AGACTTGTTTTGCCCTGCCC 61.115 55.000 0.00 0.00 0.00 5.36
3834 4617 8.605746 CCATATATTTTTGCTCATTTTGTGGTG 58.394 33.333 0.00 0.00 0.00 4.17
3845 4629 5.415221 TCATTTTGTGGTGACCTGTTTTTC 58.585 37.500 2.11 0.00 0.00 2.29
3866 4650 1.830477 TCCTGTTGCTTTTGTGGCTTT 59.170 42.857 0.00 0.00 0.00 3.51
3876 4660 2.452600 TTGTGGCTTTCCAGTTTCCT 57.547 45.000 0.00 0.00 44.48 3.36
3877 4661 1.691196 TGTGGCTTTCCAGTTTCCTG 58.309 50.000 0.00 0.00 44.48 3.86
3878 4662 1.064017 TGTGGCTTTCCAGTTTCCTGT 60.064 47.619 0.00 0.00 44.48 4.00
3879 4663 1.338020 GTGGCTTTCCAGTTTCCTGTG 59.662 52.381 0.00 0.00 44.48 3.66
3880 4664 0.961753 GGCTTTCCAGTTTCCTGTGG 59.038 55.000 0.00 0.00 36.95 4.17
3881 4665 1.692411 GCTTTCCAGTTTCCTGTGGT 58.308 50.000 0.00 0.00 36.95 4.16
3882 4666 2.488347 GGCTTTCCAGTTTCCTGTGGTA 60.488 50.000 0.00 0.00 36.95 3.25
3884 4668 3.440522 GCTTTCCAGTTTCCTGTGGTATC 59.559 47.826 0.00 0.00 36.95 2.24
3886 4670 3.981071 TCCAGTTTCCTGTGGTATCTG 57.019 47.619 0.00 0.00 36.95 2.90
3888 4672 3.007940 TCCAGTTTCCTGTGGTATCTGTG 59.992 47.826 0.00 0.00 36.95 3.66
3889 4673 3.007940 CCAGTTTCCTGTGGTATCTGTGA 59.992 47.826 0.00 0.00 36.95 3.58
3891 4675 4.021104 CAGTTTCCTGTGGTATCTGTGAGA 60.021 45.833 0.00 0.00 33.80 3.27
3892 4676 4.780021 AGTTTCCTGTGGTATCTGTGAGAT 59.220 41.667 0.00 0.00 38.70 2.75
3893 4677 5.958380 AGTTTCCTGTGGTATCTGTGAGATA 59.042 40.000 0.00 0.00 36.20 1.98
3894 4678 8.108392 CAGTTTCCTGTGGTATCTGTGAGATAC 61.108 44.444 13.25 13.25 42.92 2.24
3904 4688 5.606348 ATCTGTGAGATACTCCCTTTGTC 57.394 43.478 0.00 0.00 32.12 3.18
3905 4689 3.769844 TCTGTGAGATACTCCCTTTGTCC 59.230 47.826 0.00 0.00 0.00 4.02
3906 4690 2.838202 TGTGAGATACTCCCTTTGTCCC 59.162 50.000 0.00 0.00 0.00 4.46
3907 4691 3.108376 GTGAGATACTCCCTTTGTCCCT 58.892 50.000 0.00 0.00 0.00 4.20
3908 4692 4.264668 TGTGAGATACTCCCTTTGTCCCTA 60.265 45.833 0.00 0.00 0.00 3.53
3909 4693 4.715297 GTGAGATACTCCCTTTGTCCCTAA 59.285 45.833 0.00 0.00 0.00 2.69
3910 4694 5.189145 GTGAGATACTCCCTTTGTCCCTAAA 59.811 44.000 0.00 0.00 0.00 1.85
3911 4695 5.970640 TGAGATACTCCCTTTGTCCCTAAAT 59.029 40.000 0.00 0.00 0.00 1.40
3912 4696 7.070821 GTGAGATACTCCCTTTGTCCCTAAATA 59.929 40.741 0.00 0.00 0.00 1.40
3913 4697 7.626084 TGAGATACTCCCTTTGTCCCTAAATAA 59.374 37.037 0.00 0.00 0.00 1.40
3914 4698 8.035448 AGATACTCCCTTTGTCCCTAAATAAG 57.965 38.462 0.00 0.00 0.00 1.73
3915 4699 7.628101 AGATACTCCCTTTGTCCCTAAATAAGT 59.372 37.037 0.00 0.00 0.00 2.24
3916 4700 5.816682 ACTCCCTTTGTCCCTAAATAAGTG 58.183 41.667 0.00 0.00 0.00 3.16
3917 4701 5.312443 ACTCCCTTTGTCCCTAAATAAGTGT 59.688 40.000 0.00 0.00 0.00 3.55
3918 4702 5.812286 TCCCTTTGTCCCTAAATAAGTGTC 58.188 41.667 0.00 0.00 0.00 3.67
3919 4703 5.550403 TCCCTTTGTCCCTAAATAAGTGTCT 59.450 40.000 0.00 0.00 0.00 3.41
3920 4704 5.880887 CCCTTTGTCCCTAAATAAGTGTCTC 59.119 44.000 0.00 0.00 0.00 3.36
3921 4705 6.472887 CCTTTGTCCCTAAATAAGTGTCTCA 58.527 40.000 0.00 0.00 0.00 3.27
3922 4706 6.940298 CCTTTGTCCCTAAATAAGTGTCTCAA 59.060 38.462 0.00 0.00 0.00 3.02
3923 4707 7.094762 CCTTTGTCCCTAAATAAGTGTCTCAAC 60.095 40.741 0.00 0.00 0.00 3.18
3924 4708 6.681729 TGTCCCTAAATAAGTGTCTCAACT 57.318 37.500 0.00 0.00 0.00 3.16
3925 4709 7.074653 TGTCCCTAAATAAGTGTCTCAACTT 57.925 36.000 0.00 0.00 42.89 2.66
3926 4710 7.514721 TGTCCCTAAATAAGTGTCTCAACTTT 58.485 34.615 0.00 0.00 40.77 2.66
3927 4711 7.444183 TGTCCCTAAATAAGTGTCTCAACTTTG 59.556 37.037 0.00 0.00 40.77 2.77
3928 4712 7.444487 GTCCCTAAATAAGTGTCTCAACTTTGT 59.556 37.037 0.00 0.00 40.77 2.83
3929 4713 8.653191 TCCCTAAATAAGTGTCTCAACTTTGTA 58.347 33.333 0.00 0.00 40.77 2.41
3930 4714 8.718734 CCCTAAATAAGTGTCTCAACTTTGTAC 58.281 37.037 0.00 0.00 40.77 2.90
3931 4715 9.490379 CCTAAATAAGTGTCTCAACTTTGTACT 57.510 33.333 0.00 0.00 40.77 2.73
3937 4721 8.421673 AAGTGTCTCAACTTTGTACTAACTTC 57.578 34.615 0.00 0.00 37.05 3.01
3938 4722 7.553334 AGTGTCTCAACTTTGTACTAACTTCA 58.447 34.615 0.00 0.00 0.00 3.02
3939 4723 7.491696 AGTGTCTCAACTTTGTACTAACTTCAC 59.508 37.037 0.00 0.00 0.00 3.18
3940 4724 7.277098 GTGTCTCAACTTTGTACTAACTTCACA 59.723 37.037 0.00 0.00 0.00 3.58
3941 4725 7.277098 TGTCTCAACTTTGTACTAACTTCACAC 59.723 37.037 0.00 0.00 0.00 3.82
3942 4726 7.491696 GTCTCAACTTTGTACTAACTTCACACT 59.508 37.037 0.00 0.00 0.00 3.55
3943 4727 8.038944 TCTCAACTTTGTACTAACTTCACACTT 58.961 33.333 0.00 0.00 0.00 3.16
3944 4728 9.309516 CTCAACTTTGTACTAACTTCACACTTA 57.690 33.333 0.00 0.00 0.00 2.24
3945 4729 9.826574 TCAACTTTGTACTAACTTCACACTTAT 57.173 29.630 0.00 0.00 0.00 1.73
3951 4735 8.385898 TGTACTAACTTCACACTTATTTTGGG 57.614 34.615 0.00 0.00 0.00 4.12
3952 4736 8.212312 TGTACTAACTTCACACTTATTTTGGGA 58.788 33.333 0.00 0.00 0.00 4.37
3953 4737 7.506328 ACTAACTTCACACTTATTTTGGGAC 57.494 36.000 0.00 0.00 0.00 4.46
3954 4738 5.432885 AACTTCACACTTATTTTGGGACG 57.567 39.130 0.00 0.00 0.00 4.79
3955 4739 3.818773 ACTTCACACTTATTTTGGGACGG 59.181 43.478 0.00 0.00 0.00 4.79
3956 4740 3.773418 TCACACTTATTTTGGGACGGA 57.227 42.857 0.00 0.00 0.00 4.69
3957 4741 3.670625 TCACACTTATTTTGGGACGGAG 58.329 45.455 0.00 0.00 0.00 4.63
3958 4742 2.747446 CACACTTATTTTGGGACGGAGG 59.253 50.000 0.00 0.00 0.00 4.30
3959 4743 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3960 4744 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3961 4745 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
4001 4936 9.826574 ACATCACTAGTAGTAAAACTGAAACAA 57.173 29.630 1.57 0.00 0.00 2.83
4012 4947 9.003658 AGTAAAACTGAAACAACTATGGAGATG 57.996 33.333 0.00 0.00 0.00 2.90
4022 4957 2.836981 ACTATGGAGATGCCTAGATGCC 59.163 50.000 0.00 0.00 37.63 4.40
4026 4961 2.902486 TGGAGATGCCTAGATGCCTAAG 59.098 50.000 0.00 0.00 37.63 2.18
4076 5011 9.577222 GACTAGGTTTGATAGATAGACTAACCT 57.423 37.037 14.07 14.07 45.69 3.50
4084 5019 8.824756 TGATAGATAGACTAACCTTCAACTGT 57.175 34.615 0.00 0.00 34.56 3.55
4139 5074 3.093814 TGAAACATGAGCAATCAGGCAT 58.906 40.909 0.00 0.00 35.83 4.40
4149 5084 3.392285 AGCAATCAGGCATACCATACTCA 59.608 43.478 0.00 0.00 39.06 3.41
4150 5085 3.750130 GCAATCAGGCATACCATACTCAG 59.250 47.826 0.00 0.00 39.06 3.35
4204 5142 5.496556 CCACTTTATACATGACTGGTTGGA 58.503 41.667 0.00 0.00 0.00 3.53
4208 5146 3.719268 ATACATGACTGGTTGGAGCAA 57.281 42.857 0.00 0.00 0.00 3.91
4209 5147 1.609208 ACATGACTGGTTGGAGCAAC 58.391 50.000 0.00 0.00 42.89 4.17
4234 5192 2.614259 CTGTCCTGGGTAGCTATCCAT 58.386 52.381 26.03 0.00 35.56 3.41
4280 5238 4.694339 AGTTCTTGACGCTTAGACTTGTT 58.306 39.130 0.00 0.00 0.00 2.83
4293 5251 3.990092 AGACTTGTTCGCATGAGTTACA 58.010 40.909 0.00 0.00 0.00 2.41
4371 5329 1.153309 CGATGATGGCAGCAGGACA 60.153 57.895 12.39 0.00 40.35 4.02
4455 5413 1.405121 GGTTCGGAAGGCGAGTACATT 60.405 52.381 0.00 0.00 0.00 2.71
4482 5440 0.660595 GGTCATCCGACGTGATAGCG 60.661 60.000 0.00 0.00 43.61 4.26
4503 5461 2.223433 GGTGCTGTCATCATAAGCTTGC 60.223 50.000 9.86 0.49 37.82 4.01
4512 5470 0.183492 CATAAGCTTGCCCTGCCCTA 59.817 55.000 9.86 0.00 0.00 3.53
4584 5551 4.293415 CTCTTTGCTTGTGATTGGTGAAC 58.707 43.478 0.00 0.00 0.00 3.18
4585 5552 3.953612 TCTTTGCTTGTGATTGGTGAACT 59.046 39.130 0.00 0.00 0.00 3.01
4669 5639 0.871057 GACTTCAGAAGTGGCTGTGC 59.129 55.000 21.00 0.34 43.03 4.57
4671 5641 1.155042 CTTCAGAAGTGGCTGTGCTC 58.845 55.000 1.48 0.00 37.20 4.26
4765 5744 1.828979 TGGCCGACTGAAAATAACCC 58.171 50.000 0.00 0.00 0.00 4.11
4789 5769 1.508632 TGTGAAGAACGCTTGGTAGC 58.491 50.000 0.00 0.00 44.21 3.58
4907 5891 5.584913 ACAGAAGATTTGTCTCTAGGAGGA 58.415 41.667 0.00 0.00 0.00 3.71
4909 5893 7.358263 ACAGAAGATTTGTCTCTAGGAGGATA 58.642 38.462 0.00 0.00 0.00 2.59
4946 5936 3.058570 TGCTATTTGTGCGTTGTTACCTG 60.059 43.478 0.00 0.00 0.00 4.00
4955 5945 1.000955 CGTTGTTACCTGACCAGCTCT 59.999 52.381 0.00 0.00 0.00 4.09
4956 5946 2.548067 CGTTGTTACCTGACCAGCTCTT 60.548 50.000 0.00 0.00 0.00 2.85
4968 5958 1.606480 CCAGCTCTTTCTTGTCAGCGA 60.606 52.381 0.00 0.00 36.95 4.93
4979 5969 3.692998 GTCAGCGAGACAGAGACTG 57.307 57.895 7.37 0.00 46.77 3.51
4980 5970 0.170116 GTCAGCGAGACAGAGACTGG 59.830 60.000 7.37 0.00 46.77 4.00
4989 5979 2.037772 AGACAGAGACTGGCAAATCGTT 59.962 45.455 7.36 0.00 42.99 3.85
4990 5980 3.258372 AGACAGAGACTGGCAAATCGTTA 59.742 43.478 7.36 0.00 42.99 3.18
4991 5981 3.994392 GACAGAGACTGGCAAATCGTTAA 59.006 43.478 0.00 0.00 39.71 2.01
4995 5985 2.095853 AGACTGGCAAATCGTTAATGCG 59.904 45.455 0.00 0.00 40.94 4.73
5021 6011 4.136796 TCTGAAAGACAATGTCCAACTGG 58.863 43.478 10.12 0.00 38.67 4.00
5065 6073 4.093556 CGAAAGGCAGATCTTAACAAGGAC 59.906 45.833 0.00 0.00 0.00 3.85
5072 6082 6.317857 GCAGATCTTAACAAGGACACAAATC 58.682 40.000 0.00 0.00 0.00 2.17
5113 6123 1.424493 CTAGCTTTTCCGAGCCTGCG 61.424 60.000 0.00 0.00 43.74 5.18
5134 6145 3.496884 CGGTTCGTGAAGGAAAAATCAGA 59.503 43.478 0.00 0.00 0.00 3.27
5182 6193 2.811317 GACGTGAGAAGCTGGCCG 60.811 66.667 0.00 0.00 0.00 6.13
5275 6294 2.664424 CGCGACCGAATCAAAACACAAT 60.664 45.455 0.00 0.00 36.29 2.71
5283 6302 5.390613 CGAATCAAAACACAATACACTCCC 58.609 41.667 0.00 0.00 0.00 4.30
5330 6349 0.396417 ACGAGATCCTCTGGACTGGG 60.396 60.000 0.00 0.00 32.98 4.45
5361 6380 1.745489 GGTCACATTCGCACCTCCC 60.745 63.158 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.985139 GTTAGTAGTTCACGCTGTCACC 59.015 50.000 0.00 0.00 0.00 4.02
66 67 5.359009 ACTCTGTATCTTTGGGCATTCATTG 59.641 40.000 0.00 0.00 0.00 2.82
75 76 4.020218 TCACCTTCACTCTGTATCTTTGGG 60.020 45.833 0.00 0.00 0.00 4.12
100 101 2.090760 TCAGCACAGCAAACAAAGTGA 58.909 42.857 0.00 0.00 33.99 3.41
102 103 2.800629 GCATCAGCACAGCAAACAAAGT 60.801 45.455 0.00 0.00 41.58 2.66
108 109 3.368822 GGGCATCAGCACAGCAAA 58.631 55.556 0.00 0.00 45.91 3.68
122 123 1.376037 AGCAGCAGAAACTACGGGC 60.376 57.895 0.00 0.00 0.00 6.13
129 130 2.008329 CAGGATCTCAGCAGCAGAAAC 58.992 52.381 0.00 0.00 0.00 2.78
136 137 0.528033 CTGCGTCAGGATCTCAGCAG 60.528 60.000 12.08 12.08 44.51 4.24
178 179 5.277601 CAATTGCTTTGCCAGAGAATTTG 57.722 39.130 0.00 0.00 0.00 2.32
202 203 1.270625 TGTAGCACTTCTTTCGGTGGG 60.271 52.381 0.00 0.00 34.41 4.61
203 204 2.163818 TGTAGCACTTCTTTCGGTGG 57.836 50.000 0.00 0.00 34.41 4.61
211 212 5.611374 ACAAGTATGTGTTGTAGCACTTCT 58.389 37.500 0.75 0.00 38.69 2.85
250 251 4.951715 TGATCTACTCAGCCATGCATTTTT 59.048 37.500 0.00 0.00 0.00 1.94
287 288 4.591321 ACCCATAATCATCCACAACTGT 57.409 40.909 0.00 0.00 0.00 3.55
288 289 7.403312 TTTTACCCATAATCATCCACAACTG 57.597 36.000 0.00 0.00 0.00 3.16
310 311 5.279256 CCCGGTCCTGTGATTTTACATTTTT 60.279 40.000 0.00 0.00 0.00 1.94
327 328 1.144057 CACTCACATAGCCCGGTCC 59.856 63.158 0.00 0.00 0.00 4.46
330 331 3.685139 ATATTCACTCACATAGCCCGG 57.315 47.619 0.00 0.00 0.00 5.73
353 354 4.917385 TGCACAATATTGGGAGTACTTGT 58.083 39.130 22.03 0.00 31.80 3.16
354 355 5.589855 TGATGCACAATATTGGGAGTACTTG 59.410 40.000 22.03 7.85 31.80 3.16
381 399 8.836413 CACAAATGAACCTAGTTTACAGAAGAA 58.164 33.333 0.00 0.00 0.00 2.52
382 400 7.990886 ACACAAATGAACCTAGTTTACAGAAGA 59.009 33.333 0.00 0.00 0.00 2.87
383 401 8.154649 ACACAAATGAACCTAGTTTACAGAAG 57.845 34.615 0.00 0.00 0.00 2.85
384 402 9.048446 GTACACAAATGAACCTAGTTTACAGAA 57.952 33.333 0.00 0.00 0.00 3.02
385 403 8.205512 TGTACACAAATGAACCTAGTTTACAGA 58.794 33.333 0.00 0.00 0.00 3.41
386 404 8.373048 TGTACACAAATGAACCTAGTTTACAG 57.627 34.615 0.00 0.00 0.00 2.74
387 405 8.734218 TTGTACACAAATGAACCTAGTTTACA 57.266 30.769 0.00 0.00 32.11 2.41
388 406 9.821662 GATTGTACACAAATGAACCTAGTTTAC 57.178 33.333 0.00 0.00 39.55 2.01
389 407 9.787435 AGATTGTACACAAATGAACCTAGTTTA 57.213 29.630 0.00 0.00 39.55 2.01
390 408 8.691661 AGATTGTACACAAATGAACCTAGTTT 57.308 30.769 0.00 0.00 39.55 2.66
391 409 8.691661 AAGATTGTACACAAATGAACCTAGTT 57.308 30.769 0.00 0.00 39.55 2.24
392 410 8.567948 CAAAGATTGTACACAAATGAACCTAGT 58.432 33.333 0.00 0.00 39.55 2.57
393 411 8.023128 CCAAAGATTGTACACAAATGAACCTAG 58.977 37.037 0.00 0.00 39.55 3.02
394 412 7.040062 CCCAAAGATTGTACACAAATGAACCTA 60.040 37.037 0.00 0.00 39.55 3.08
395 413 6.239289 CCCAAAGATTGTACACAAATGAACCT 60.239 38.462 0.00 0.00 39.55 3.50
396 414 5.925969 CCCAAAGATTGTACACAAATGAACC 59.074 40.000 0.00 0.00 39.55 3.62
397 415 5.405269 GCCCAAAGATTGTACACAAATGAAC 59.595 40.000 0.00 0.00 39.55 3.18
398 416 5.069648 TGCCCAAAGATTGTACACAAATGAA 59.930 36.000 0.00 0.00 39.55 2.57
399 417 4.586421 TGCCCAAAGATTGTACACAAATGA 59.414 37.500 0.00 0.00 39.55 2.57
400 418 4.880759 TGCCCAAAGATTGTACACAAATG 58.119 39.130 0.00 0.00 39.55 2.32
401 419 5.245751 TGATGCCCAAAGATTGTACACAAAT 59.754 36.000 0.00 0.00 39.55 2.32
402 420 4.586421 TGATGCCCAAAGATTGTACACAAA 59.414 37.500 0.00 0.00 39.55 2.83
403 421 4.022416 GTGATGCCCAAAGATTGTACACAA 60.022 41.667 0.00 0.00 40.51 3.33
404 422 3.505680 GTGATGCCCAAAGATTGTACACA 59.494 43.478 0.00 0.00 0.00 3.72
405 423 3.119495 GGTGATGCCCAAAGATTGTACAC 60.119 47.826 0.00 0.00 0.00 2.90
406 424 3.088532 GGTGATGCCCAAAGATTGTACA 58.911 45.455 0.00 0.00 0.00 2.90
407 425 3.088532 TGGTGATGCCCAAAGATTGTAC 58.911 45.455 0.00 0.00 36.04 2.90
408 426 3.010027 TCTGGTGATGCCCAAAGATTGTA 59.990 43.478 0.00 0.00 33.07 2.41
409 427 2.173519 CTGGTGATGCCCAAAGATTGT 58.826 47.619 0.00 0.00 33.07 2.71
410 428 2.165030 GTCTGGTGATGCCCAAAGATTG 59.835 50.000 0.00 0.00 33.07 2.67
411 429 2.450476 GTCTGGTGATGCCCAAAGATT 58.550 47.619 0.00 0.00 33.07 2.40
412 430 1.679944 CGTCTGGTGATGCCCAAAGAT 60.680 52.381 0.00 0.00 33.07 2.40
413 431 0.321564 CGTCTGGTGATGCCCAAAGA 60.322 55.000 0.00 0.00 33.07 2.52
414 432 0.321564 TCGTCTGGTGATGCCCAAAG 60.322 55.000 0.00 0.00 33.07 2.77
415 433 0.109532 TTCGTCTGGTGATGCCCAAA 59.890 50.000 0.00 0.00 33.07 3.28
416 434 0.109532 TTTCGTCTGGTGATGCCCAA 59.890 50.000 0.00 0.00 33.07 4.12
417 435 0.321564 CTTTCGTCTGGTGATGCCCA 60.322 55.000 0.00 0.00 36.04 5.36
418 436 1.026718 CCTTTCGTCTGGTGATGCCC 61.027 60.000 0.00 0.00 36.04 5.36
419 437 1.026718 CCCTTTCGTCTGGTGATGCC 61.027 60.000 0.00 0.00 37.90 4.40
420 438 1.648467 GCCCTTTCGTCTGGTGATGC 61.648 60.000 0.00 0.00 0.00 3.91
421 439 0.036010 AGCCCTTTCGTCTGGTGATG 60.036 55.000 0.00 0.00 0.00 3.07
422 440 1.568504 TAGCCCTTTCGTCTGGTGAT 58.431 50.000 0.00 0.00 0.00 3.06
423 441 1.207089 CATAGCCCTTTCGTCTGGTGA 59.793 52.381 0.00 0.00 0.00 4.02
424 442 1.066143 ACATAGCCCTTTCGTCTGGTG 60.066 52.381 0.00 0.00 0.00 4.17
425 443 1.276622 ACATAGCCCTTTCGTCTGGT 58.723 50.000 0.00 0.00 0.00 4.00
426 444 2.431057 ACTACATAGCCCTTTCGTCTGG 59.569 50.000 0.00 0.00 0.00 3.86
427 445 3.130516 TCACTACATAGCCCTTTCGTCTG 59.869 47.826 0.00 0.00 0.00 3.51
428 446 3.362706 TCACTACATAGCCCTTTCGTCT 58.637 45.455 0.00 0.00 0.00 4.18
429 447 3.795623 TCACTACATAGCCCTTTCGTC 57.204 47.619 0.00 0.00 0.00 4.20
430 448 4.755266 AATCACTACATAGCCCTTTCGT 57.245 40.909 0.00 0.00 0.00 3.85
431 449 8.470805 AGATATAATCACTACATAGCCCTTTCG 58.529 37.037 0.00 0.00 0.00 3.46
432 450 9.810545 GAGATATAATCACTACATAGCCCTTTC 57.189 37.037 0.00 0.00 0.00 2.62
433 451 9.326489 TGAGATATAATCACTACATAGCCCTTT 57.674 33.333 0.00 0.00 0.00 3.11
434 452 8.901472 TGAGATATAATCACTACATAGCCCTT 57.099 34.615 0.00 0.00 0.00 3.95
435 453 9.499369 AATGAGATATAATCACTACATAGCCCT 57.501 33.333 0.00 0.00 0.00 5.19
450 468 9.681062 GGGATTCCCGAATTAAATGAGATATAA 57.319 33.333 5.84 0.00 32.13 0.98
468 486 4.681074 TCAAACAAACAAAGGGATTCCC 57.319 40.909 14.42 14.42 45.90 3.97
469 487 6.993079 ACTATCAAACAAACAAAGGGATTCC 58.007 36.000 0.00 0.00 0.00 3.01
470 488 8.141268 TCAACTATCAAACAAACAAAGGGATTC 58.859 33.333 0.00 0.00 0.00 2.52
471 489 7.926018 GTCAACTATCAAACAAACAAAGGGATT 59.074 33.333 0.00 0.00 0.00 3.01
472 490 7.287696 AGTCAACTATCAAACAAACAAAGGGAT 59.712 33.333 0.00 0.00 0.00 3.85
473 491 6.605594 AGTCAACTATCAAACAAACAAAGGGA 59.394 34.615 0.00 0.00 0.00 4.20
474 492 6.805713 AGTCAACTATCAAACAAACAAAGGG 58.194 36.000 0.00 0.00 0.00 3.95
475 493 9.965824 ATAAGTCAACTATCAAACAAACAAAGG 57.034 29.630 0.00 0.00 0.00 3.11
478 496 9.729023 CACATAAGTCAACTATCAAACAAACAA 57.271 29.630 0.00 0.00 0.00 2.83
479 497 7.860373 GCACATAAGTCAACTATCAAACAAACA 59.140 33.333 0.00 0.00 0.00 2.83
480 498 7.059488 CGCACATAAGTCAACTATCAAACAAAC 59.941 37.037 0.00 0.00 0.00 2.93
481 499 7.041712 TCGCACATAAGTCAACTATCAAACAAA 60.042 33.333 0.00 0.00 0.00 2.83
482 500 6.425417 TCGCACATAAGTCAACTATCAAACAA 59.575 34.615 0.00 0.00 0.00 2.83
483 501 5.929415 TCGCACATAAGTCAACTATCAAACA 59.071 36.000 0.00 0.00 0.00 2.83
484 502 6.403333 TCGCACATAAGTCAACTATCAAAC 57.597 37.500 0.00 0.00 0.00 2.93
485 503 6.816140 TGATCGCACATAAGTCAACTATCAAA 59.184 34.615 0.00 0.00 0.00 2.69
486 504 6.337356 TGATCGCACATAAGTCAACTATCAA 58.663 36.000 0.00 0.00 0.00 2.57
487 505 5.901552 TGATCGCACATAAGTCAACTATCA 58.098 37.500 0.00 0.00 0.00 2.15
488 506 7.169813 TGAATGATCGCACATAAGTCAACTATC 59.830 37.037 0.00 0.00 0.00 2.08
489 507 6.986231 TGAATGATCGCACATAAGTCAACTAT 59.014 34.615 0.00 0.00 0.00 2.12
490 508 6.337356 TGAATGATCGCACATAAGTCAACTA 58.663 36.000 0.00 0.00 0.00 2.24
491 509 5.178061 TGAATGATCGCACATAAGTCAACT 58.822 37.500 0.00 0.00 0.00 3.16
492 510 5.063944 ACTGAATGATCGCACATAAGTCAAC 59.936 40.000 0.00 0.00 0.00 3.18
493 511 5.178061 ACTGAATGATCGCACATAAGTCAA 58.822 37.500 0.00 0.00 0.00 3.18
494 512 4.758688 ACTGAATGATCGCACATAAGTCA 58.241 39.130 0.00 0.00 0.00 3.41
495 513 5.725110 AACTGAATGATCGCACATAAGTC 57.275 39.130 0.00 0.00 31.50 3.01
496 514 5.674569 GCAAACTGAATGATCGCACATAAGT 60.675 40.000 0.00 0.00 32.48 2.24
502 520 2.617250 TGCAAACTGAATGATCGCAC 57.383 45.000 0.00 0.00 0.00 5.34
503 521 3.190953 TGATTGCAAACTGAATGATCGCA 59.809 39.130 1.71 0.00 0.00 5.10
505 523 5.396484 ACTTGATTGCAAACTGAATGATCG 58.604 37.500 1.71 0.00 32.73 3.69
518 536 3.664107 ACTTAAGCGAGACTTGATTGCA 58.336 40.909 1.29 0.00 39.58 4.08
521 539 9.601217 AATTGTATACTTAAGCGAGACTTGATT 57.399 29.630 1.29 0.00 39.58 2.57
522 540 9.601217 AAATTGTATACTTAAGCGAGACTTGAT 57.399 29.630 1.29 0.00 39.58 2.57
529 547 6.477688 TCGGGAAAATTGTATACTTAAGCGAG 59.522 38.462 1.29 0.00 0.00 5.03
532 555 7.549615 ACTCGGGAAAATTGTATACTTAAGC 57.450 36.000 1.29 0.00 0.00 3.09
542 565 6.127281 ACCTAAAACAAACTCGGGAAAATTGT 60.127 34.615 0.00 0.00 35.86 2.71
576 609 6.168270 CAAACCCTGGACCATCTTTAAAAA 57.832 37.500 0.00 0.00 0.00 1.94
577 610 5.799827 CAAACCCTGGACCATCTTTAAAA 57.200 39.130 0.00 0.00 0.00 1.52
614 647 4.703093 GGGAGAAAAATGTTACGGATGGAA 59.297 41.667 0.00 0.00 0.00 3.53
631 664 2.562296 AGCCCACTATGAAAGGGAGAA 58.438 47.619 0.00 0.00 45.80 2.87
633 666 2.370189 CCTAGCCCACTATGAAAGGGAG 59.630 54.545 0.00 0.00 45.80 4.30
635 668 1.202818 GCCTAGCCCACTATGAAAGGG 60.203 57.143 0.00 0.00 45.68 3.95
656 690 1.078143 GAATGGGTGGCTTCTCGCT 60.078 57.895 0.00 0.00 39.13 4.93
753 811 1.005228 TAGGACGGAAAGGAGGAGGA 58.995 55.000 0.00 0.00 0.00 3.71
754 812 1.861982 TTAGGACGGAAAGGAGGAGG 58.138 55.000 0.00 0.00 0.00 4.30
755 813 2.093606 GGTTTAGGACGGAAAGGAGGAG 60.094 54.545 0.00 0.00 0.00 3.69
756 814 1.904537 GGTTTAGGACGGAAAGGAGGA 59.095 52.381 0.00 0.00 0.00 3.71
809 867 3.227276 CCGAGGAGACCGGGGATG 61.227 72.222 6.32 0.00 43.05 3.51
938 1011 1.272769 ACTACAGGAGACCGAACAAGC 59.727 52.381 0.00 0.00 0.00 4.01
939 1012 3.005472 TGAACTACAGGAGACCGAACAAG 59.995 47.826 0.00 0.00 0.00 3.16
1161 1241 4.220602 AGTCATTTGATTGTTACCTTGGGC 59.779 41.667 0.00 0.00 0.00 5.36
1307 1813 5.125900 TGGATATGAGCAAGTGTTTGGATTG 59.874 40.000 0.00 0.00 34.79 2.67
1543 2052 7.175104 AGACAAGAAGGGCAGAAATTTACATA 58.825 34.615 0.00 0.00 0.00 2.29
1663 2174 2.487762 TGCATCAGAAATGGTCGGAAAC 59.512 45.455 0.00 0.00 33.90 2.78
1698 2209 5.171339 ACTTTCATGGATCTGCAGTAACT 57.829 39.130 14.67 0.00 0.00 2.24
1826 2479 0.759060 GTTCCTTGCCACCTGGGTTT 60.759 55.000 0.00 0.00 39.65 3.27
1932 2585 3.517296 TGTGGGTGATATGGTGTGTTT 57.483 42.857 0.00 0.00 0.00 2.83
1933 2586 3.737559 ATGTGGGTGATATGGTGTGTT 57.262 42.857 0.00 0.00 0.00 3.32
1961 2648 1.608025 CCTGCTTCGCCTGAACAACTA 60.608 52.381 0.00 0.00 0.00 2.24
2031 2719 1.006998 AGGCCAGGGATTGCACATTAA 59.993 47.619 5.01 0.00 0.00 1.40
2055 2743 5.056894 ACAGTAGAGCTTAGGTAACAACG 57.943 43.478 0.00 0.00 41.41 4.10
2059 2747 9.247126 GCTTATAAACAGTAGAGCTTAGGTAAC 57.753 37.037 0.00 0.00 0.00 2.50
2084 2772 5.954335 AGTATACTGCAAAAATTCACCAGC 58.046 37.500 4.10 0.00 0.00 4.85
2266 2955 3.096852 ACATACCGGAACACTGATCTCA 58.903 45.455 9.46 0.00 0.00 3.27
2310 3001 6.441222 AGGTCCTATCACCAAACACTAGATA 58.559 40.000 0.00 0.00 39.16 1.98
2467 3158 8.993121 TCTTCAAGAACATAGAGTGATTTTGAC 58.007 33.333 0.00 0.00 0.00 3.18
2512 3212 6.320164 GGATAATAACATAAACTGTGGCCACA 59.680 38.462 35.49 35.49 38.39 4.17
2542 3242 8.365399 TCTCATCGCAGTAAAATATTAGGTTG 57.635 34.615 0.00 0.00 0.00 3.77
2637 3339 4.339247 GTGGGTGGTATCATTGAATTCCAG 59.661 45.833 2.27 0.00 0.00 3.86
2828 3537 4.203654 AGTACGGAACCAAGAAAGGATC 57.796 45.455 0.00 0.00 0.00 3.36
2844 3553 3.007979 TGAGTGTGCAGTTGTAGTACG 57.992 47.619 0.00 0.00 0.00 3.67
2894 3604 7.692460 AACGTGATGCATAATCCATGAATAT 57.308 32.000 11.20 0.00 32.47 1.28
2915 3625 9.222916 CTATACCATAGTGCGATATTCTAAACG 57.777 37.037 0.00 0.00 0.00 3.60
3072 3782 7.452880 AACAGAGCAGAGCAAATAACATAAA 57.547 32.000 0.00 0.00 0.00 1.40
3194 3905 4.042187 AGTGGATCTGAACTAAAGGCAGTT 59.958 41.667 0.00 0.00 41.44 3.16
3234 3945 3.455327 CACAGATACTGAGCATGGTGAG 58.545 50.000 9.97 9.97 35.18 3.51
3249 3960 2.541346 CGATGCAAATAGTCGCACAGAT 59.459 45.455 0.00 0.00 41.79 2.90
3253 3964 1.658596 TCACGATGCAAATAGTCGCAC 59.341 47.619 6.57 0.00 41.79 5.34
3266 3983 5.287170 ACTTCACATTGACAATCACGATG 57.713 39.130 0.00 0.00 35.83 3.84
3350 4069 6.591448 CCTGGCAATCTGAATTAAGGTTTTTC 59.409 38.462 0.00 0.00 0.00 2.29
3522 4255 1.261619 GAAGTGCTCACTGTTCCAACG 59.738 52.381 2.97 0.00 41.58 4.10
3581 4314 7.250032 TGAGGCTATAAGCAGTTATGATCAT 57.750 36.000 13.81 13.81 44.75 2.45
3600 4333 5.239525 AGTTGATGTGTTTCTAGTTTGAGGC 59.760 40.000 0.00 0.00 0.00 4.70
3640 4374 6.568462 CGATAATTATGTGAAGGGGTGCAATC 60.568 42.308 1.78 0.00 0.00 2.67
3641 4375 5.241506 CGATAATTATGTGAAGGGGTGCAAT 59.758 40.000 1.78 0.00 0.00 3.56
3642 4376 4.578516 CGATAATTATGTGAAGGGGTGCAA 59.421 41.667 1.78 0.00 0.00 4.08
3643 4377 4.133820 CGATAATTATGTGAAGGGGTGCA 58.866 43.478 1.78 0.00 0.00 4.57
3644 4378 4.134563 ACGATAATTATGTGAAGGGGTGC 58.865 43.478 1.78 0.00 0.00 5.01
3645 4379 6.017934 CAGAACGATAATTATGTGAAGGGGTG 60.018 42.308 1.78 0.00 0.00 4.61
3646 4380 6.055588 CAGAACGATAATTATGTGAAGGGGT 58.944 40.000 1.78 0.00 0.00 4.95
3647 4381 6.055588 ACAGAACGATAATTATGTGAAGGGG 58.944 40.000 1.78 0.00 32.90 4.79
3666 4400 5.527214 CACATAGAAACAACACCTCACAGAA 59.473 40.000 0.00 0.00 0.00 3.02
3765 4507 5.070446 TGGTCACTGACTAATCACACTTCTT 59.930 40.000 9.08 0.00 32.47 2.52
3796 4568 4.687901 AAATATATGGGCAGGGCAAAAC 57.312 40.909 0.00 0.00 0.00 2.43
3801 4573 2.634453 AGCAAAAATATATGGGCAGGGC 59.366 45.455 0.00 0.00 0.00 5.19
3808 4580 8.605746 CACCACAAAATGAGCAAAAATATATGG 58.394 33.333 0.00 0.00 0.00 2.74
3809 4581 9.368674 TCACCACAAAATGAGCAAAAATATATG 57.631 29.630 0.00 0.00 0.00 1.78
3834 4617 2.952310 AGCAACAGGAGAAAAACAGGTC 59.048 45.455 0.00 0.00 0.00 3.85
3845 4629 1.035139 AGCCACAAAAGCAACAGGAG 58.965 50.000 0.00 0.00 0.00 3.69
3881 4665 5.598830 GGACAAAGGGAGTATCTCACAGATA 59.401 44.000 1.88 0.00 38.91 1.98
3882 4666 4.407296 GGACAAAGGGAGTATCTCACAGAT 59.593 45.833 1.88 0.00 38.91 2.90
3884 4668 3.118592 GGGACAAAGGGAGTATCTCACAG 60.119 52.174 1.88 0.00 38.91 3.66
3886 4670 3.108376 AGGGACAAAGGGAGTATCTCAC 58.892 50.000 0.00 0.00 38.91 3.51
3888 4672 5.952347 TTTAGGGACAAAGGGAGTATCTC 57.048 43.478 0.00 0.00 33.92 2.75
3889 4673 7.628101 ACTTATTTAGGGACAAAGGGAGTATCT 59.372 37.037 0.00 0.00 33.73 1.98
3891 4675 7.184022 ACACTTATTTAGGGACAAAGGGAGTAT 59.816 37.037 0.00 0.00 0.00 2.12
3892 4676 6.502863 ACACTTATTTAGGGACAAAGGGAGTA 59.497 38.462 0.00 0.00 0.00 2.59
3893 4677 5.312443 ACACTTATTTAGGGACAAAGGGAGT 59.688 40.000 0.00 0.00 0.00 3.85
3894 4678 5.816682 ACACTTATTTAGGGACAAAGGGAG 58.183 41.667 0.00 0.00 0.00 4.30
3895 4679 5.550403 AGACACTTATTTAGGGACAAAGGGA 59.450 40.000 0.00 0.00 0.00 4.20
3896 4680 5.816682 AGACACTTATTTAGGGACAAAGGG 58.183 41.667 0.00 0.00 0.00 3.95
3897 4681 6.472887 TGAGACACTTATTTAGGGACAAAGG 58.527 40.000 0.00 0.00 0.00 3.11
3898 4682 7.661847 AGTTGAGACACTTATTTAGGGACAAAG 59.338 37.037 0.00 0.00 0.00 2.77
3899 4683 7.514721 AGTTGAGACACTTATTTAGGGACAAA 58.485 34.615 0.00 0.00 0.00 2.83
3900 4684 7.074653 AGTTGAGACACTTATTTAGGGACAA 57.925 36.000 0.00 0.00 0.00 3.18
3901 4685 6.681729 AGTTGAGACACTTATTTAGGGACA 57.318 37.500 0.00 0.00 0.00 4.02
3902 4686 7.444487 ACAAAGTTGAGACACTTATTTAGGGAC 59.556 37.037 0.00 0.00 35.87 4.46
3903 4687 7.514721 ACAAAGTTGAGACACTTATTTAGGGA 58.485 34.615 0.00 0.00 35.87 4.20
3904 4688 7.745620 ACAAAGTTGAGACACTTATTTAGGG 57.254 36.000 0.00 0.00 35.87 3.53
3905 4689 9.490379 AGTACAAAGTTGAGACACTTATTTAGG 57.510 33.333 0.00 0.00 35.87 2.69
3911 4695 9.525409 GAAGTTAGTACAAAGTTGAGACACTTA 57.475 33.333 0.00 0.00 35.87 2.24
3912 4696 8.038944 TGAAGTTAGTACAAAGTTGAGACACTT 58.961 33.333 0.00 3.16 38.74 3.16
3913 4697 7.491696 GTGAAGTTAGTACAAAGTTGAGACACT 59.508 37.037 0.00 0.00 0.00 3.55
3914 4698 7.277098 TGTGAAGTTAGTACAAAGTTGAGACAC 59.723 37.037 0.00 0.00 0.00 3.67
3915 4699 7.277098 GTGTGAAGTTAGTACAAAGTTGAGACA 59.723 37.037 0.00 0.00 0.00 3.41
3916 4700 7.491696 AGTGTGAAGTTAGTACAAAGTTGAGAC 59.508 37.037 0.00 0.00 0.00 3.36
3917 4701 7.553334 AGTGTGAAGTTAGTACAAAGTTGAGA 58.447 34.615 0.00 0.00 0.00 3.27
3918 4702 7.772332 AGTGTGAAGTTAGTACAAAGTTGAG 57.228 36.000 0.00 0.00 0.00 3.02
3919 4703 9.826574 ATAAGTGTGAAGTTAGTACAAAGTTGA 57.173 29.630 0.00 0.00 0.00 3.18
3925 4709 8.842280 CCCAAAATAAGTGTGAAGTTAGTACAA 58.158 33.333 0.00 0.00 0.00 2.41
3926 4710 8.212312 TCCCAAAATAAGTGTGAAGTTAGTACA 58.788 33.333 0.00 0.00 0.00 2.90
3927 4711 8.501580 GTCCCAAAATAAGTGTGAAGTTAGTAC 58.498 37.037 0.00 0.00 0.00 2.73
3928 4712 7.385752 CGTCCCAAAATAAGTGTGAAGTTAGTA 59.614 37.037 0.00 0.00 0.00 1.82
3929 4713 6.204108 CGTCCCAAAATAAGTGTGAAGTTAGT 59.796 38.462 0.00 0.00 0.00 2.24
3930 4714 6.348213 CCGTCCCAAAATAAGTGTGAAGTTAG 60.348 42.308 0.00 0.00 0.00 2.34
3931 4715 5.470777 CCGTCCCAAAATAAGTGTGAAGTTA 59.529 40.000 0.00 0.00 0.00 2.24
3932 4716 4.277423 CCGTCCCAAAATAAGTGTGAAGTT 59.723 41.667 0.00 0.00 0.00 2.66
3933 4717 3.818773 CCGTCCCAAAATAAGTGTGAAGT 59.181 43.478 0.00 0.00 0.00 3.01
3934 4718 4.069304 TCCGTCCCAAAATAAGTGTGAAG 58.931 43.478 0.00 0.00 0.00 3.02
3935 4719 4.069304 CTCCGTCCCAAAATAAGTGTGAA 58.931 43.478 0.00 0.00 0.00 3.18
3936 4720 3.558321 CCTCCGTCCCAAAATAAGTGTGA 60.558 47.826 0.00 0.00 0.00 3.58
3937 4721 2.747446 CCTCCGTCCCAAAATAAGTGTG 59.253 50.000 0.00 0.00 0.00 3.82
3938 4722 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3939 4723 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3940 4724 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3941 4725 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3942 4726 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3943 4727 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3944 4728 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3945 4729 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3946 4730 0.906282 GGTACTCCCTCCGTCCCAAA 60.906 60.000 0.00 0.00 0.00 3.28
3947 4731 1.305549 GGTACTCCCTCCGTCCCAA 60.306 63.158 0.00 0.00 0.00 4.12
3948 4732 2.361771 GGTACTCCCTCCGTCCCA 59.638 66.667 0.00 0.00 0.00 4.37
3949 4733 2.056815 GTGGTACTCCCTCCGTCCC 61.057 68.421 0.00 0.00 0.00 4.46
3950 4734 0.614134 AAGTGGTACTCCCTCCGTCC 60.614 60.000 0.00 0.00 0.00 4.79
3951 4735 1.264295 AAAGTGGTACTCCCTCCGTC 58.736 55.000 0.00 0.00 0.00 4.79
3952 4736 2.454538 CTAAAGTGGTACTCCCTCCGT 58.545 52.381 0.00 0.00 0.00 4.69
3953 4737 1.755380 CCTAAAGTGGTACTCCCTCCG 59.245 57.143 0.00 0.00 0.00 4.63
3954 4738 2.830293 ACCTAAAGTGGTACTCCCTCC 58.170 52.381 0.00 0.00 38.79 4.30
4001 4936 2.836981 GGCATCTAGGCATCTCCATAGT 59.163 50.000 0.00 0.00 43.51 2.12
4012 4947 5.771165 AGTACTACTTCTTAGGCATCTAGGC 59.229 44.000 0.00 0.00 44.61 3.93
4022 4957 8.634444 ACCAGCAATATGAGTACTACTTCTTAG 58.366 37.037 0.00 0.00 0.00 2.18
4026 4961 7.222999 GTCAACCAGCAATATGAGTACTACTTC 59.777 40.741 0.00 0.00 0.00 3.01
4073 5008 0.033601 TTGGCACCACAGTTGAAGGT 60.034 50.000 0.00 0.00 35.65 3.50
4074 5009 1.270550 GATTGGCACCACAGTTGAAGG 59.729 52.381 0.00 0.00 0.00 3.46
4076 5011 1.133513 AGGATTGGCACCACAGTTGAA 60.134 47.619 0.00 0.00 0.00 2.69
4078 5013 2.198827 TAGGATTGGCACCACAGTTG 57.801 50.000 0.00 0.00 0.00 3.16
4084 5019 9.660180 GTAAAAATAAATTTAGGATTGGCACCA 57.340 29.630 3.94 0.00 0.00 4.17
4170 5108 5.425196 TGTATAAAGTGGGTGTAGGGAAC 57.575 43.478 0.00 0.00 0.00 3.62
4173 5111 5.130477 AGTCATGTATAAAGTGGGTGTAGGG 59.870 44.000 0.00 0.00 0.00 3.53
4180 5118 4.640201 CCAACCAGTCATGTATAAAGTGGG 59.360 45.833 9.38 0.00 37.74 4.61
4181 5119 5.496556 TCCAACCAGTCATGTATAAAGTGG 58.503 41.667 4.13 4.13 39.07 4.00
4186 5124 4.835284 TGCTCCAACCAGTCATGTATAA 57.165 40.909 0.00 0.00 0.00 0.98
4204 5142 2.227036 CCAGGACAGGAGGGTTGCT 61.227 63.158 0.00 0.00 0.00 3.91
4253 5211 4.278669 AGTCTAAGCGTCAAGAACTCAAGA 59.721 41.667 0.00 0.00 0.00 3.02
4254 5212 4.551388 AGTCTAAGCGTCAAGAACTCAAG 58.449 43.478 0.00 0.00 0.00 3.02
4255 5213 4.585955 AGTCTAAGCGTCAAGAACTCAA 57.414 40.909 0.00 0.00 0.00 3.02
4256 5214 4.202121 ACAAGTCTAAGCGTCAAGAACTCA 60.202 41.667 0.00 0.00 0.00 3.41
4257 5215 4.299978 ACAAGTCTAAGCGTCAAGAACTC 58.700 43.478 0.00 0.00 0.00 3.01
4258 5216 4.323553 ACAAGTCTAAGCGTCAAGAACT 57.676 40.909 0.00 0.00 0.00 3.01
4259 5217 4.375105 CGAACAAGTCTAAGCGTCAAGAAC 60.375 45.833 0.00 0.00 0.00 3.01
4260 5218 3.734231 CGAACAAGTCTAAGCGTCAAGAA 59.266 43.478 0.00 0.00 0.00 2.52
4280 5238 1.546029 ACAGCTCTGTAACTCATGCGA 59.454 47.619 0.00 0.00 42.90 5.10
4293 5251 1.617850 CAGAGAAGTGGTCACAGCTCT 59.382 52.381 15.21 15.21 41.49 4.09
4371 5329 2.644299 TCCAGGAGTGATTGACAATGGT 59.356 45.455 5.14 0.00 0.00 3.55
4455 5413 0.526211 CGTCGGATGACCTGAGAACA 59.474 55.000 0.00 0.00 42.37 3.18
4482 5440 2.223433 GCAAGCTTATGATGACAGCACC 60.223 50.000 0.00 0.00 0.00 5.01
4503 5461 0.460311 CTAGTTCACGTAGGGCAGGG 59.540 60.000 0.00 0.00 0.00 4.45
4584 5551 2.740981 AGAGCGAAGAAGCAATTCACAG 59.259 45.455 0.00 0.00 40.15 3.66
4585 5552 2.771089 AGAGCGAAGAAGCAATTCACA 58.229 42.857 0.00 0.00 40.15 3.58
4765 5744 0.453282 CAAGCGTTCTTCACATGGCG 60.453 55.000 0.00 0.00 0.00 5.69
4808 5788 1.236616 CCGAGCCAAGTGCAATGTCA 61.237 55.000 0.00 0.00 44.83 3.58
4837 5817 7.119992 AGACGAGTAGTATTATCCAGCATAGTG 59.880 40.741 0.00 0.00 0.00 2.74
4843 5823 4.477780 GCAGACGAGTAGTATTATCCAGC 58.522 47.826 0.00 0.00 0.00 4.85
4909 5893 9.520204 GCACAAATAGCATTTTTGTATGACTAT 57.480 29.630 10.19 0.00 43.51 2.12
4923 5913 3.756434 AGGTAACAACGCACAAATAGCAT 59.244 39.130 0.00 0.00 41.41 3.79
4946 5936 1.803555 GCTGACAAGAAAGAGCTGGTC 59.196 52.381 0.00 0.00 38.95 4.02
4968 5958 1.620819 ACGATTTGCCAGTCTCTGTCT 59.379 47.619 0.00 0.00 0.00 3.41
4971 5961 4.728882 GCATTAACGATTTGCCAGTCTCTG 60.729 45.833 0.00 0.00 0.00 3.35
4975 5965 2.440501 CGCATTAACGATTTGCCAGTC 58.559 47.619 0.00 0.00 32.76 3.51
4976 5966 1.132262 CCGCATTAACGATTTGCCAGT 59.868 47.619 0.00 0.00 32.76 4.00
4977 5967 1.826327 CCGCATTAACGATTTGCCAG 58.174 50.000 0.00 0.00 32.76 4.85
4978 5968 0.179150 GCCGCATTAACGATTTGCCA 60.179 50.000 0.00 0.00 32.76 4.92
4979 5969 0.179150 TGCCGCATTAACGATTTGCC 60.179 50.000 0.00 0.00 32.76 4.52
4980 5970 1.780860 GATGCCGCATTAACGATTTGC 59.219 47.619 7.43 0.00 34.06 3.68
4989 5979 2.984562 TGTCTTTCAGATGCCGCATTA 58.015 42.857 7.43 0.00 0.00 1.90
4990 5980 1.825090 TGTCTTTCAGATGCCGCATT 58.175 45.000 7.43 0.00 0.00 3.56
4991 5981 1.825090 TTGTCTTTCAGATGCCGCAT 58.175 45.000 5.28 5.28 0.00 4.73
4995 5985 3.084039 TGGACATTGTCTTTCAGATGCC 58.916 45.455 16.02 0.00 32.47 4.40
5019 6009 2.350895 CGGGTGGCATCAGTTCCA 59.649 61.111 0.00 0.00 0.00 3.53
5021 6011 1.450312 CTCCGGGTGGCATCAGTTC 60.450 63.158 0.00 0.00 34.14 3.01
5065 6073 4.157289 CAGAATTGACTGGGGAGATTTGTG 59.843 45.833 0.00 0.00 34.64 3.33
5113 6123 4.613850 GCTCTGATTTTTCCTTCACGAACC 60.614 45.833 0.00 0.00 0.00 3.62
5118 6128 3.192212 CAGGGCTCTGATTTTTCCTTCAC 59.808 47.826 8.28 0.00 43.49 3.18
5134 6145 1.006102 CGAAAGTCGTGACAGGGCT 60.006 57.895 0.00 0.00 34.72 5.19
5169 6180 3.706373 GACCCGGCCAGCTTCTCA 61.706 66.667 2.24 0.00 0.00 3.27
5275 6294 1.156803 ACGGGGTCTTGGGAGTGTA 59.843 57.895 0.00 0.00 0.00 2.90
5361 6380 1.060308 CCGCGGCGTGATTAAGTTG 59.940 57.895 23.75 0.00 0.00 3.16
5435 6454 2.125912 AGACGATCCTGTGCGTGC 60.126 61.111 0.00 0.00 41.34 5.34
5436 6455 0.799917 CAGAGACGATCCTGTGCGTG 60.800 60.000 0.00 0.00 41.34 5.34
5437 6456 1.244697 ACAGAGACGATCCTGTGCGT 61.245 55.000 2.02 0.00 41.59 5.24
5438 6457 0.524392 GACAGAGACGATCCTGTGCG 60.524 60.000 7.03 0.00 43.02 5.34
5440 6459 1.815613 ACAGACAGAGACGATCCTGTG 59.184 52.381 7.03 1.45 43.02 3.66
5442 6461 2.354510 GAGACAGACAGAGACGATCCTG 59.645 54.545 0.00 0.00 36.53 3.86
5443 6462 2.639065 GAGACAGACAGAGACGATCCT 58.361 52.381 0.00 0.00 0.00 3.24
5444 6463 1.673920 GGAGACAGACAGAGACGATCC 59.326 57.143 0.00 0.00 0.00 3.36
5445 6464 2.096819 GTGGAGACAGACAGAGACGATC 59.903 54.545 0.00 0.00 44.46 3.69
5446 6465 2.088423 GTGGAGACAGACAGAGACGAT 58.912 52.381 0.00 0.00 44.46 3.73
5447 6466 1.524848 GTGGAGACAGACAGAGACGA 58.475 55.000 0.00 0.00 44.46 4.20
5448 6467 0.167033 CGTGGAGACAGACAGAGACG 59.833 60.000 0.00 0.00 44.46 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.