Multiple sequence alignment - TraesCS5A01G212300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G212300 chr5A 100.000 5586 0 0 1 5586 427666037 427671622 0.000000e+00 10316.0
1 TraesCS5A01G212300 chr5A 86.486 74 6 4 5514 5586 573078850 573078780 1.670000e-10 78.7
2 TraesCS5A01G212300 chr5A 97.143 35 1 0 4852 4886 427670856 427670890 6.040000e-05 60.2
3 TraesCS5A01G212300 chr5A 97.143 35 1 0 4820 4854 427670888 427670922 6.040000e-05 60.2
4 TraesCS5A01G212300 chr5B 93.124 4596 197 53 531 5052 382229835 382225285 0.000000e+00 6626.0
5 TraesCS5A01G212300 chr5B 84.831 356 29 8 5060 5414 30920098 30919767 8.970000e-88 335.0
6 TraesCS5A01G212300 chr5B 83.989 356 32 8 5060 5414 30994232 30993901 9.030000e-83 318.0
7 TraesCS5A01G212300 chr5B 79.204 452 38 28 2 424 382232561 382232137 4.290000e-66 263.0
8 TraesCS5A01G212300 chr5B 96.610 118 2 2 418 535 382232096 382231981 1.590000e-45 195.0
9 TraesCS5A01G212300 chr5B 93.130 131 8 1 4929 5059 6717308 6717179 2.050000e-44 191.0
10 TraesCS5A01G212300 chr5B 93.130 131 8 1 4929 5059 6724314 6724185 2.050000e-44 191.0
11 TraesCS5A01G212300 chr5B 92.366 131 9 1 4929 5059 6705005 6704876 9.560000e-43 185.0
12 TraesCS5A01G212300 chr5B 92.366 131 9 1 4929 5059 6711212 6711083 9.560000e-43 185.0
13 TraesCS5A01G212300 chr5B 94.215 121 7 0 4939 5059 30920182 30920062 9.560000e-43 185.0
14 TraesCS5A01G212300 chr5B 93.548 124 7 1 4929 5052 24430339 24430217 3.440000e-42 183.0
15 TraesCS5A01G212300 chr5B 90.164 61 6 0 4855 4915 382225521 382225461 4.640000e-11 80.5
16 TraesCS5A01G212300 chr5D 93.674 2893 98 38 2179 5057 328911560 328908739 0.000000e+00 4250.0
17 TraesCS5A01G212300 chr5D 91.001 1678 106 23 544 2179 328913329 328911655 0.000000e+00 2220.0
18 TraesCS5A01G212300 chr5D 86.197 355 25 10 5060 5414 328908773 328908443 4.110000e-96 363.0
19 TraesCS5A01G212300 chr5D 83.005 406 40 9 5060 5457 373201674 373201290 1.930000e-89 340.0
20 TraesCS5A01G212300 chr5D 83.287 359 35 10 5057 5414 435180695 435181029 1.950000e-79 307.0
21 TraesCS5A01G212300 chr5D 86.364 176 20 4 69 244 328914984 328914813 7.390000e-44 189.0
22 TraesCS5A01G212300 chr5D 89.855 138 11 2 5452 5586 328907928 328907791 2.070000e-39 174.0
23 TraesCS5A01G212300 chr5D 95.082 61 3 0 4855 4915 328908980 328908920 4.610000e-16 97.1
24 TraesCS5A01G212300 chr4B 85.606 396 29 7 5060 5451 615713316 615713687 1.890000e-104 390.0
25 TraesCS5A01G212300 chr1D 84.750 400 32 10 5060 5451 343262268 343261890 1.900000e-99 374.0
26 TraesCS5A01G212300 chr1D 87.671 73 4 5 5516 5586 309361396 309361327 4.640000e-11 80.5
27 TraesCS5A01G212300 chr2B 90.511 274 22 4 4304 4576 52111900 52112170 5.320000e-95 359.0
28 TraesCS5A01G212300 chr2B 89.706 272 25 1 4308 4576 58917918 58917647 1.490000e-90 344.0
29 TraesCS5A01G212300 chr2B 81.841 391 38 11 5073 5451 568818147 568817778 1.180000e-76 298.0
30 TraesCS5A01G212300 chr3D 83.744 406 34 13 5057 5451 533900085 533900469 6.880000e-94 355.0
31 TraesCS5A01G212300 chr3D 89.338 272 25 2 4308 4576 569274662 569274932 6.930000e-89 339.0
32 TraesCS5A01G212300 chr3D 83.427 356 34 8 5060 5414 418763397 418763066 1.950000e-79 307.0
33 TraesCS5A01G212300 chr3D 84.211 76 10 2 5511 5586 256943569 256943496 7.760000e-09 73.1
34 TraesCS5A01G212300 chr3B 90.189 265 22 3 4315 4576 803186710 803186973 5.360000e-90 342.0
35 TraesCS5A01G212300 chr3B 85.915 71 8 2 5517 5586 410644062 410643993 2.160000e-09 75.0
36 TraesCS5A01G212300 chr7B 83.000 400 38 11 5060 5451 531216347 531215970 8.970000e-88 335.0
37 TraesCS5A01G212300 chr7B 88.806 268 26 3 4312 4576 489271293 489271027 5.400000e-85 326.0
38 TraesCS5A01G212300 chr7B 87.170 265 30 2 4312 4573 687448358 687448621 1.180000e-76 298.0
39 TraesCS5A01G212300 chr7B 84.507 71 9 2 5517 5586 591797835 591797766 1.000000e-07 69.4
40 TraesCS5A01G212300 chr6D 82.630 403 38 10 5060 5451 360318688 360318307 1.500000e-85 327.0
41 TraesCS5A01G212300 chr6A 82.382 403 39 12 5060 5451 501477910 501477529 6.980000e-84 322.0
42 TraesCS5A01G212300 chr4A 88.722 266 26 2 4314 4576 728720301 728720037 6.980000e-84 322.0
43 TraesCS5A01G212300 chr2A 82.426 404 37 13 5057 5451 161845983 161846361 6.980000e-84 322.0
44 TraesCS5A01G212300 chr2A 82.266 406 40 14 5057 5451 572618838 572619222 6.980000e-84 322.0
45 TraesCS5A01G212300 chr4D 90.678 236 14 3 5218 5451 484200233 484200462 1.950000e-79 307.0
46 TraesCS5A01G212300 chr4D 84.000 75 8 4 5514 5586 395030659 395030587 1.000000e-07 69.4
47 TraesCS5A01G212300 chr7A 89.441 161 16 1 5062 5221 662395096 662395256 9.490000e-48 202.0
48 TraesCS5A01G212300 chrUn 93.130 131 8 1 4929 5059 307827309 307827180 2.050000e-44 191.0
49 TraesCS5A01G212300 chrUn 91.791 134 10 1 4926 5059 423978889 423979021 9.560000e-43 185.0
50 TraesCS5A01G212300 chr6B 89.655 58 6 0 5517 5574 201154648 201154705 2.160000e-09 75.0
51 TraesCS5A01G212300 chr6B 89.091 55 6 0 5514 5568 205007022 205007076 1.000000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G212300 chr5A 427666037 427671622 5585 False 3478.800000 10316 98.095333 1 5586 3 chr5A.!!$F1 5585
1 TraesCS5A01G212300 chr5B 382225285 382229835 4550 True 6626.000000 6626 93.124000 531 5052 1 chr5B.!!$R7 4521
2 TraesCS5A01G212300 chr5B 382231981 382232561 580 True 229.000000 263 87.907000 2 535 2 chr5B.!!$R10 533
3 TraesCS5A01G212300 chr5D 328907791 328914984 7193 True 1215.516667 4250 90.362167 69 5586 6 chr5D.!!$R2 5517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
500 1547 0.255890 AATGATTAGCGCCCCACACT 59.744 50.000 2.29 0.0 0.00 3.55 F
1424 2737 0.106519 ATTCCCCGCTTCCCAATCTG 60.107 55.000 0.00 0.0 0.00 2.90 F
1491 2804 0.757561 TGGTGAAGGAGTGGTCGTCA 60.758 55.000 0.00 0.0 0.00 4.35 F
1744 3060 1.000385 TGCGCTTTAATGTTGCTTGCT 60.000 42.857 9.73 0.0 0.00 3.91 F
1758 3074 1.130186 GCTTGCTGCTACTCTTTGCTC 59.870 52.381 0.00 0.0 38.95 4.26 F
3753 5181 1.835494 TCACGCTCTTGCCTAGTACT 58.165 50.000 0.00 0.0 35.36 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2126 3455 1.016130 CGATTGAAGCGCTCACCTGT 61.016 55.000 12.06 0.00 32.21 4.00 R
2712 4139 0.464870 CAGGCTCTCCAGTCTCCATG 59.535 60.000 0.00 0.00 29.27 3.66 R
2713 4140 1.336632 GCAGGCTCTCCAGTCTCCAT 61.337 60.000 0.00 0.00 29.27 3.41 R
3371 4799 2.097825 ACAGGAGCATGCAAAAGATCC 58.902 47.619 21.98 16.51 40.54 3.36 R
3753 5181 1.553248 CCACCGGACTATTCAACCAGA 59.447 52.381 9.46 0.00 0.00 3.86 R
5049 6517 0.096454 GTGGCGTTGGCGTCTAATTC 59.904 55.000 0.00 0.00 44.07 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.741915 TGAAGTTGGGTTCGGTTTGC 59.258 50.000 0.00 0.00 0.00 3.68
27 28 1.134037 AGTTGGGTTCGGTTTGCTGTA 60.134 47.619 0.00 0.00 0.00 2.74
33 34 3.292426 TCGGTTTGCTGTAGCGAAA 57.708 47.368 8.06 3.38 45.16 3.46
36 37 2.669434 TCGGTTTGCTGTAGCGAAATAC 59.331 45.455 8.06 0.00 45.16 1.89
84 111 1.904144 CTCGAGAAATCGTGCGGTAA 58.096 50.000 6.58 0.00 0.00 2.85
87 114 4.031418 TCGAGAAATCGTGCGGTAATTA 57.969 40.909 0.00 0.00 0.00 1.40
88 115 4.613944 TCGAGAAATCGTGCGGTAATTAT 58.386 39.130 0.00 0.00 0.00 1.28
89 116 5.761003 TCGAGAAATCGTGCGGTAATTATA 58.239 37.500 0.00 0.00 0.00 0.98
106 133 9.420551 GGTAATTATAACTAGGATCAAGTTCGG 57.579 37.037 14.07 0.00 38.18 4.30
107 134 9.420551 GTAATTATAACTAGGATCAAGTTCGGG 57.579 37.037 14.07 0.00 38.18 5.14
116 143 1.569493 CAAGTTCGGGTCACTTGCG 59.431 57.895 0.10 0.00 43.48 4.85
160 187 2.233431 ACAAGCAAGGCAAAGTGTTTCA 59.767 40.909 0.00 0.00 0.00 2.69
167 194 4.799564 AGGCAAAGTGTTTCAAAGACAA 57.200 36.364 0.00 0.00 0.00 3.18
178 205 9.313118 AGTGTTTCAAAGACAATTTAAACATCC 57.687 29.630 0.00 0.00 38.60 3.51
179 206 8.547894 GTGTTTCAAAGACAATTTAAACATCCC 58.452 33.333 0.00 0.00 38.60 3.85
181 208 5.465935 TCAAAGACAATTTAAACATCCCGC 58.534 37.500 0.00 0.00 0.00 6.13
183 210 5.722021 AAGACAATTTAAACATCCCGCTT 57.278 34.783 0.00 0.00 0.00 4.68
191 218 0.460311 AACATCCCGCTTCCTCTACG 59.540 55.000 0.00 0.00 0.00 3.51
200 227 2.648426 GCTTCCTCTACGCGTGTATAC 58.352 52.381 24.59 0.00 0.00 1.47
279 458 6.034577 GGTTCCGTCTCAAACAAAAGAAAAAG 59.965 38.462 0.00 0.00 0.00 2.27
282 461 5.220209 CCGTCTCAAACAAAAGAAAAAGCAC 60.220 40.000 0.00 0.00 0.00 4.40
284 463 5.637387 GTCTCAAACAAAAGAAAAAGCACCA 59.363 36.000 0.00 0.00 0.00 4.17
285 464 5.868801 TCTCAAACAAAAGAAAAAGCACCAG 59.131 36.000 0.00 0.00 0.00 4.00
302 485 1.837051 AGGCAGGTGTCGACTTGGA 60.837 57.895 17.92 0.00 29.85 3.53
346 784 8.559536 CATATACATTGACTTCGGCAAAATACT 58.440 33.333 0.00 0.00 0.00 2.12
348 786 6.422776 ACATTGACTTCGGCAAAATACTAG 57.577 37.500 0.00 0.00 0.00 2.57
370 808 3.840124 ATCACCTCCCTTCCGAATTAC 57.160 47.619 0.00 0.00 0.00 1.89
377 815 4.262506 CCTCCCTTCCGAATTACTGGATAC 60.263 50.000 0.00 0.00 33.42 2.24
411 849 1.576356 GCCCATGCGAACAAACAAAA 58.424 45.000 0.00 0.00 0.00 2.44
473 1520 2.029623 GAGGAGCCACGTATTACCAGA 58.970 52.381 0.00 0.00 0.00 3.86
500 1547 0.255890 AATGATTAGCGCCCCACACT 59.744 50.000 2.29 0.00 0.00 3.55
536 1583 7.013942 CAGCATCCATCCAAAATATCTCAGAAA 59.986 37.037 0.00 0.00 0.00 2.52
537 1584 7.230913 AGCATCCATCCAAAATATCTCAGAAAG 59.769 37.037 0.00 0.00 0.00 2.62
540 1796 9.705103 ATCCATCCAAAATATCTCAGAAAGAAA 57.295 29.630 0.00 0.00 37.61 2.52
640 1899 4.629523 TGTTTCGTGGGCCCGTCC 62.630 66.667 19.37 6.57 0.00 4.79
652 1911 4.444838 CCGTCCGCCACCGAATCA 62.445 66.667 0.00 0.00 36.29 2.57
655 1914 1.153449 GTCCGCCACCGAATCATCA 60.153 57.895 0.00 0.00 36.29 3.07
663 1922 0.830648 ACCGAATCATCACCGTCCAT 59.169 50.000 0.00 0.00 0.00 3.41
676 1935 1.868997 GTCCATCACGCCACACAAG 59.131 57.895 0.00 0.00 0.00 3.16
678 1937 0.320683 TCCATCACGCCACACAAGAG 60.321 55.000 0.00 0.00 0.00 2.85
774 2057 3.503363 GCATCAGCTGACGTGGGC 61.503 66.667 20.97 13.84 37.91 5.36
907 2195 2.920869 CATCGAACCGAATCGCCG 59.079 61.111 0.00 0.42 42.44 6.46
971 2270 0.667792 GCGAGCGAAAAGAGAGGTGT 60.668 55.000 0.00 0.00 0.00 4.16
977 2276 1.801178 CGAAAAGAGAGGTGTGGAAGC 59.199 52.381 0.00 0.00 0.00 3.86
1011 2313 1.528292 CGAGGGAGATGGGATCGGAC 61.528 65.000 0.00 0.00 0.00 4.79
1034 2336 3.379445 GAGCTGGAACGGGGTCGA 61.379 66.667 0.00 0.00 40.11 4.20
1067 2369 0.904865 TGTGGCGGTGAGGAGAAGAT 60.905 55.000 0.00 0.00 0.00 2.40
1146 2448 2.959071 GACATCTCGCTGCCGCTC 60.959 66.667 0.00 0.00 0.00 5.03
1238 2551 1.303561 GTTGGGCATGTGGCTCTGA 60.304 57.895 6.52 0.00 46.01 3.27
1275 2588 2.407210 GGTGTGTTGGTGTGCGTG 59.593 61.111 0.00 0.00 0.00 5.34
1276 2589 2.277884 GTGTGTTGGTGTGCGTGC 60.278 61.111 0.00 0.00 0.00 5.34
1294 2607 3.050275 GGTGTTCGAGCAGCCACC 61.050 66.667 19.28 11.35 40.47 4.61
1298 2611 3.241530 TTCGAGCAGCCACCACCT 61.242 61.111 0.00 0.00 0.00 4.00
1374 2687 0.179189 GTTTGGAGAAATGCCTCGCG 60.179 55.000 0.00 0.00 34.08 5.87
1420 2733 2.024846 TGATTAATTCCCCGCTTCCCAA 60.025 45.455 0.00 0.00 0.00 4.12
1424 2737 0.106519 ATTCCCCGCTTCCCAATCTG 60.107 55.000 0.00 0.00 0.00 2.90
1436 2749 6.094881 CGCTTCCCAATCTGGTTTTCTAATAA 59.905 38.462 0.00 0.00 35.17 1.40
1491 2804 0.757561 TGGTGAAGGAGTGGTCGTCA 60.758 55.000 0.00 0.00 0.00 4.35
1554 2867 3.854414 GCATCACCAACATGTGTGAGTTG 60.854 47.826 19.95 15.93 44.07 3.16
1640 2953 2.422832 GAGCATGCTTGGAAGAGGAAAG 59.577 50.000 23.61 0.00 0.00 2.62
1695 3011 3.118665 ACAAGGCAGTTGCTTGAATTGTT 60.119 39.130 17.20 0.00 40.15 2.83
1709 3025 3.004629 TGAATTGTTCACACAGACCATGC 59.995 43.478 0.00 0.00 34.08 4.06
1737 3053 6.254281 ACTTAATGACTGCGCTTTAATGTT 57.746 33.333 9.73 0.00 0.00 2.71
1738 3054 6.086222 ACTTAATGACTGCGCTTTAATGTTG 58.914 36.000 9.73 0.00 0.00 3.33
1739 3055 2.330231 TGACTGCGCTTTAATGTTGC 57.670 45.000 9.73 2.25 0.00 4.17
1741 3057 2.293122 TGACTGCGCTTTAATGTTGCTT 59.707 40.909 9.73 0.00 0.00 3.91
1742 3058 2.658325 GACTGCGCTTTAATGTTGCTTG 59.342 45.455 9.73 5.31 0.00 4.01
1743 3059 1.387756 CTGCGCTTTAATGTTGCTTGC 59.612 47.619 9.73 0.00 0.00 4.01
1744 3060 1.000385 TGCGCTTTAATGTTGCTTGCT 60.000 42.857 9.73 0.00 0.00 3.91
1745 3061 1.387756 GCGCTTTAATGTTGCTTGCTG 59.612 47.619 0.00 0.00 0.00 4.41
1746 3062 1.387756 CGCTTTAATGTTGCTTGCTGC 59.612 47.619 0.00 0.00 43.25 5.25
1747 3063 2.680577 GCTTTAATGTTGCTTGCTGCT 58.319 42.857 0.00 0.00 43.37 4.24
1748 3064 3.670359 CGCTTTAATGTTGCTTGCTGCTA 60.670 43.478 0.00 0.00 43.37 3.49
1749 3065 3.609807 GCTTTAATGTTGCTTGCTGCTAC 59.390 43.478 0.00 9.06 45.29 3.58
1750 3066 4.616835 GCTTTAATGTTGCTTGCTGCTACT 60.617 41.667 14.61 2.75 45.30 2.57
1751 3067 4.685169 TTAATGTTGCTTGCTGCTACTC 57.315 40.909 14.61 0.00 45.30 2.59
1753 3069 2.260844 TGTTGCTTGCTGCTACTCTT 57.739 45.000 14.61 0.00 45.30 2.85
1754 3070 2.575532 TGTTGCTTGCTGCTACTCTTT 58.424 42.857 14.61 0.00 45.30 2.52
1757 3073 1.163554 GCTTGCTGCTACTCTTTGCT 58.836 50.000 0.00 0.00 38.95 3.91
1758 3074 1.130186 GCTTGCTGCTACTCTTTGCTC 59.870 52.381 0.00 0.00 38.95 4.26
1759 3075 2.420642 CTTGCTGCTACTCTTTGCTCA 58.579 47.619 0.00 0.00 0.00 4.26
1760 3076 2.775911 TGCTGCTACTCTTTGCTCAT 57.224 45.000 0.00 0.00 0.00 2.90
1761 3077 3.063510 TGCTGCTACTCTTTGCTCATT 57.936 42.857 0.00 0.00 0.00 2.57
1763 3079 4.774124 TGCTGCTACTCTTTGCTCATTAT 58.226 39.130 0.00 0.00 0.00 1.28
1771 3099 9.265901 GCTACTCTTTGCTCATTATTTCAGATA 57.734 33.333 0.00 0.00 0.00 1.98
1780 3108 7.605309 TGCTCATTATTTCAGATATGGCACTAG 59.395 37.037 0.00 0.00 0.00 2.57
2027 3356 2.426522 TGTTAATGACCTGCAGTGCTC 58.573 47.619 17.60 6.27 0.00 4.26
2126 3455 2.670019 TCGATCGGGAGAGGGAATTA 57.330 50.000 16.41 0.00 45.48 1.40
2196 3622 6.747125 TGGCATGTAATATTTACCTGCATTG 58.253 36.000 21.14 0.00 39.66 2.82
2234 3661 7.563188 TGTGATTGCCCATTATAGTATTGGTTT 59.437 33.333 1.12 0.00 0.00 3.27
2365 3792 8.015658 CCTCACTGTTACATAAAACTAAGTTGC 58.984 37.037 0.00 0.00 0.00 4.17
2600 4027 5.358922 ACAAATTGGTGGTTTCATTGTCTG 58.641 37.500 0.00 0.00 0.00 3.51
2893 4320 7.369607 CACAGTTGTGGAATGACATATTCAAA 58.630 34.615 4.34 0.00 42.10 2.69
2959 4386 6.531240 CGGATATTTCATTTTGGAACTGGTTG 59.469 38.462 0.00 0.00 0.00 3.77
2977 4404 7.271511 ACTGGTTGCTTTTATTTCATTCACAA 58.728 30.769 0.00 0.00 0.00 3.33
3008 4435 8.898761 TGAATTTCACTACATAATATTGCGGTT 58.101 29.630 0.00 0.00 0.00 4.44
3198 4625 4.256920 AGCGCACTTCAGTTTCATATTCT 58.743 39.130 11.47 0.00 0.00 2.40
3287 4715 7.973388 GCTAGTAGATCAATCCTATAGCACAAG 59.027 40.741 0.00 0.00 35.58 3.16
3509 4937 8.450964 TGTTCAGTAACATTATGCTTAAGCTTC 58.549 33.333 26.90 8.17 40.69 3.86
3519 4947 1.895798 GCTTAAGCTTCCCTTTTGCCT 59.104 47.619 20.38 0.00 38.21 4.75
3752 5180 2.163815 TCTTCACGCTCTTGCCTAGTAC 59.836 50.000 0.00 0.00 35.36 2.73
3753 5181 1.835494 TCACGCTCTTGCCTAGTACT 58.165 50.000 0.00 0.00 35.36 2.73
3754 5182 1.743958 TCACGCTCTTGCCTAGTACTC 59.256 52.381 0.00 0.00 35.36 2.59
3755 5183 1.746220 CACGCTCTTGCCTAGTACTCT 59.254 52.381 0.00 0.00 35.36 3.24
3756 5184 1.746220 ACGCTCTTGCCTAGTACTCTG 59.254 52.381 0.00 0.00 35.36 3.35
3757 5185 1.066303 CGCTCTTGCCTAGTACTCTGG 59.934 57.143 0.00 4.43 35.36 3.86
3758 5186 2.104170 GCTCTTGCCTAGTACTCTGGT 58.896 52.381 0.00 0.00 0.00 4.00
3759 5187 2.498078 GCTCTTGCCTAGTACTCTGGTT 59.502 50.000 0.00 0.00 0.00 3.67
3760 5188 3.677424 GCTCTTGCCTAGTACTCTGGTTG 60.677 52.174 0.00 0.00 0.00 3.77
3761 5189 3.764434 CTCTTGCCTAGTACTCTGGTTGA 59.236 47.826 0.00 3.21 0.00 3.18
3762 5190 4.157246 TCTTGCCTAGTACTCTGGTTGAA 58.843 43.478 0.00 0.00 0.00 2.69
3763 5191 4.777896 TCTTGCCTAGTACTCTGGTTGAAT 59.222 41.667 0.00 0.00 0.00 2.57
3764 5192 5.955959 TCTTGCCTAGTACTCTGGTTGAATA 59.044 40.000 0.00 0.00 0.00 1.75
3765 5193 5.854010 TGCCTAGTACTCTGGTTGAATAG 57.146 43.478 0.00 0.00 0.00 1.73
3766 5194 5.269991 TGCCTAGTACTCTGGTTGAATAGT 58.730 41.667 0.00 0.00 0.00 2.12
3767 5195 5.360144 TGCCTAGTACTCTGGTTGAATAGTC 59.640 44.000 0.00 0.00 0.00 2.59
3768 5196 5.221283 GCCTAGTACTCTGGTTGAATAGTCC 60.221 48.000 0.00 0.00 0.00 3.85
3769 5197 4.985538 AGTACTCTGGTTGAATAGTCCG 57.014 45.455 0.00 0.00 0.00 4.79
3770 5198 3.700038 AGTACTCTGGTTGAATAGTCCGG 59.300 47.826 0.00 0.00 0.00 5.14
3771 5199 2.537143 ACTCTGGTTGAATAGTCCGGT 58.463 47.619 0.00 0.00 0.00 5.28
3772 5200 2.233922 ACTCTGGTTGAATAGTCCGGTG 59.766 50.000 0.00 0.00 0.00 4.94
3773 5201 1.553248 TCTGGTTGAATAGTCCGGTGG 59.447 52.381 0.00 0.00 0.00 4.61
3774 5202 1.553248 CTGGTTGAATAGTCCGGTGGA 59.447 52.381 0.00 0.00 0.00 4.02
3775 5203 1.553248 TGGTTGAATAGTCCGGTGGAG 59.447 52.381 0.00 0.00 29.39 3.86
3776 5204 1.553704 GGTTGAATAGTCCGGTGGAGT 59.446 52.381 0.00 0.00 39.02 3.85
3777 5205 2.762327 GGTTGAATAGTCCGGTGGAGTA 59.238 50.000 0.00 3.01 41.24 2.59
3887 5315 9.466497 AGTGAGGTATGTGAATTCAATACATTT 57.534 29.630 25.35 17.21 36.52 2.32
3944 5372 2.210013 TTGTGCAGGCCTCGTCTCT 61.210 57.895 0.00 0.00 0.00 3.10
3969 5397 7.227156 TGAGGGAAGAAAGATATTCATAAGCC 58.773 38.462 0.00 0.00 0.00 4.35
4132 5561 9.415544 GCATCTATTTGTGAGAAAAGAAATGTT 57.584 29.630 0.00 0.00 0.00 2.71
4180 5609 6.071278 ACAAGGTAGTAGGAAGACATTCAGAC 60.071 42.308 0.00 0.00 37.15 3.51
4195 5624 7.987458 AGACATTCAGACTGTTACTGAGAAAAA 59.013 33.333 1.59 0.00 43.67 1.94
4223 5652 3.644966 TTTCCCCGAATAGCAGAACAT 57.355 42.857 0.00 0.00 0.00 2.71
4251 5680 9.929722 GATAATTTCGCATAATGTACTTTCACA 57.070 29.630 0.00 0.00 0.00 3.58
4531 5960 1.202031 GGCGAATACAAGAAACAGCGG 60.202 52.381 0.00 0.00 0.00 5.52
4688 6117 6.026947 ACTTGTGTTAATTAGCGAGTCTCT 57.973 37.500 0.00 0.00 0.00 3.10
4803 6232 5.177881 TGTGAATAATGTACACGTGTTGGTC 59.822 40.000 28.55 14.95 37.35 4.02
4838 6267 6.925165 ACAAGCCTAATGAATTCTGTTTTGTG 59.075 34.615 7.05 0.00 0.00 3.33
4839 6268 6.655078 AGCCTAATGAATTCTGTTTTGTGT 57.345 33.333 7.05 0.00 0.00 3.72
4840 6269 7.759489 AGCCTAATGAATTCTGTTTTGTGTA 57.241 32.000 7.05 0.00 0.00 2.90
4841 6270 8.353423 AGCCTAATGAATTCTGTTTTGTGTAT 57.647 30.769 7.05 0.00 0.00 2.29
4842 6271 8.462016 AGCCTAATGAATTCTGTTTTGTGTATC 58.538 33.333 7.05 0.00 0.00 2.24
4843 6272 8.243426 GCCTAATGAATTCTGTTTTGTGTATCA 58.757 33.333 7.05 0.00 0.00 2.15
4847 6276 9.985730 AATGAATTCTGTTTTGTGTATCATTGT 57.014 25.926 7.05 0.00 34.66 2.71
4851 6280 8.915871 ATTCTGTTTTGTGTATCATTGTATGC 57.084 30.769 0.00 0.00 0.00 3.14
4852 6281 7.686438 TCTGTTTTGTGTATCATTGTATGCT 57.314 32.000 0.00 0.00 0.00 3.79
4853 6282 7.751732 TCTGTTTTGTGTATCATTGTATGCTC 58.248 34.615 0.00 0.00 0.00 4.26
4854 6283 7.390162 TCTGTTTTGTGTATCATTGTATGCTCA 59.610 33.333 0.00 0.00 0.00 4.26
4855 6284 8.054152 TGTTTTGTGTATCATTGTATGCTCAT 57.946 30.769 0.00 0.00 0.00 2.90
4856 6285 7.969508 TGTTTTGTGTATCATTGTATGCTCATG 59.030 33.333 0.00 0.00 0.00 3.07
4857 6286 7.862512 TTTGTGTATCATTGTATGCTCATGA 57.137 32.000 0.00 0.00 0.00 3.07
4858 6287 7.862512 TTGTGTATCATTGTATGCTCATGAA 57.137 32.000 0.00 0.00 0.00 2.57
4859 6288 8.454570 TTGTGTATCATTGTATGCTCATGAAT 57.545 30.769 0.00 0.00 0.00 2.57
4860 6289 8.454570 TGTGTATCATTGTATGCTCATGAATT 57.545 30.769 0.00 0.00 0.00 2.17
4861 6290 8.562052 TGTGTATCATTGTATGCTCATGAATTC 58.438 33.333 0.00 0.00 0.00 2.17
4862 6291 8.781196 GTGTATCATTGTATGCTCATGAATTCT 58.219 33.333 7.05 0.00 0.00 2.40
4863 6292 8.780249 TGTATCATTGTATGCTCATGAATTCTG 58.220 33.333 7.05 3.03 0.00 3.02
4864 6293 7.818997 ATCATTGTATGCTCATGAATTCTGT 57.181 32.000 7.05 0.00 0.00 3.41
4865 6294 7.634671 TCATTGTATGCTCATGAATTCTGTT 57.365 32.000 7.05 0.00 0.00 3.16
4866 6295 8.058667 TCATTGTATGCTCATGAATTCTGTTT 57.941 30.769 7.05 0.00 0.00 2.83
4867 6296 8.525316 TCATTGTATGCTCATGAATTCTGTTTT 58.475 29.630 7.05 0.00 0.00 2.43
4868 6297 8.592155 CATTGTATGCTCATGAATTCTGTTTTG 58.408 33.333 7.05 0.00 0.00 2.44
4869 6298 7.218228 TGTATGCTCATGAATTCTGTTTTGT 57.782 32.000 7.05 0.00 0.00 2.83
4884 6313 7.686438 TCTGTTTTGTGTATCATTGTATGCT 57.314 32.000 0.00 0.00 0.00 3.79
4909 6338 8.101309 TCTCCATTGATTAGATTACCCAAAGA 57.899 34.615 0.00 0.00 0.00 2.52
4910 6339 8.213679 TCTCCATTGATTAGATTACCCAAAGAG 58.786 37.037 0.00 0.00 0.00 2.85
4915 6344 8.650143 TTGATTAGATTACCCAAAGAGCTTTT 57.350 30.769 0.00 0.00 0.00 2.27
4916 6345 8.281212 TGATTAGATTACCCAAAGAGCTTTTC 57.719 34.615 0.00 0.00 0.00 2.29
4917 6346 7.339466 TGATTAGATTACCCAAAGAGCTTTTCC 59.661 37.037 0.00 0.00 0.00 3.13
4918 6347 5.262455 AGATTACCCAAAGAGCTTTTCCT 57.738 39.130 0.00 0.00 0.00 3.36
4919 6348 5.257262 AGATTACCCAAAGAGCTTTTCCTC 58.743 41.667 0.00 0.00 0.00 3.71
4920 6349 2.294449 ACCCAAAGAGCTTTTCCTCC 57.706 50.000 0.00 0.00 32.17 4.30
4921 6350 1.499007 ACCCAAAGAGCTTTTCCTCCA 59.501 47.619 0.00 0.00 32.17 3.86
4937 6405 1.001068 CTCCATGGTGTTTGCAATGCA 59.999 47.619 12.58 2.72 36.47 3.96
5021 6489 2.126463 ACGATCACACCGAGCACG 60.126 61.111 0.00 0.00 39.43 5.34
5059 6527 3.250762 TGCTATGGCAATGAATTAGACGC 59.749 43.478 0.00 0.00 46.36 5.19
5060 6528 3.365364 GCTATGGCAATGAATTAGACGCC 60.365 47.826 0.00 0.00 40.02 5.68
5061 6529 2.121291 TGGCAATGAATTAGACGCCA 57.879 45.000 6.95 6.95 46.80 5.69
5062 6530 2.441410 TGGCAATGAATTAGACGCCAA 58.559 42.857 8.28 0.00 46.04 4.52
5063 6531 2.163412 TGGCAATGAATTAGACGCCAAC 59.837 45.455 8.28 0.00 46.04 3.77
5064 6532 5.263301 TGGCAATGAATTAGACGCCAACG 62.263 47.826 8.28 0.00 46.04 4.10
5065 6533 2.440501 CAATGAATTAGACGCCAACGC 58.559 47.619 0.00 0.00 45.53 4.84
5066 6534 1.014352 ATGAATTAGACGCCAACGCC 58.986 50.000 0.00 0.00 45.53 5.68
5067 6535 0.320858 TGAATTAGACGCCAACGCCA 60.321 50.000 0.00 0.00 45.53 5.69
5068 6536 0.096454 GAATTAGACGCCAACGCCAC 59.904 55.000 0.00 0.00 45.53 5.01
5069 6537 0.604243 AATTAGACGCCAACGCCACA 60.604 50.000 0.00 0.00 45.53 4.17
5070 6538 0.604243 ATTAGACGCCAACGCCACAA 60.604 50.000 0.00 0.00 45.53 3.33
5071 6539 1.500512 TTAGACGCCAACGCCACAAC 61.501 55.000 0.00 0.00 45.53 3.32
5072 6540 2.646117 TAGACGCCAACGCCACAACA 62.646 55.000 0.00 0.00 45.53 3.33
5073 6541 3.800323 GACGCCAACGCCACAACAC 62.800 63.158 0.00 0.00 45.53 3.32
5074 6542 3.582120 CGCCAACGCCACAACACT 61.582 61.111 0.00 0.00 0.00 3.55
5075 6543 2.026014 GCCAACGCCACAACACTG 59.974 61.111 0.00 0.00 0.00 3.66
5076 6544 2.026014 CCAACGCCACAACACTGC 59.974 61.111 0.00 0.00 0.00 4.40
5077 6545 2.480610 CCAACGCCACAACACTGCT 61.481 57.895 0.00 0.00 0.00 4.24
5078 6546 1.163420 CCAACGCCACAACACTGCTA 61.163 55.000 0.00 0.00 0.00 3.49
5079 6547 0.874390 CAACGCCACAACACTGCTAT 59.126 50.000 0.00 0.00 0.00 2.97
5080 6548 0.874390 AACGCCACAACACTGCTATG 59.126 50.000 0.00 0.00 0.00 2.23
5081 6549 0.955428 ACGCCACAACACTGCTATGG 60.955 55.000 0.00 0.00 0.00 2.74
5104 6572 7.216494 TGGCAATGAATTAGACGAAGATGATA 58.784 34.615 0.00 0.00 0.00 2.15
5159 6627 3.149196 CAACCTCAACCTTGCTACATGT 58.851 45.455 2.69 2.69 0.00 3.21
5181 6649 1.275010 TGCTCTCGCACATACTTGGAA 59.725 47.619 0.00 0.00 42.25 3.53
5195 6663 7.281774 CACATACTTGGAATAAGCATCTTCTGT 59.718 37.037 0.00 0.00 0.00 3.41
5198 6666 4.471904 TGGAATAAGCATCTTCTGTCGT 57.528 40.909 0.00 0.00 0.00 4.34
5199 6667 4.433615 TGGAATAAGCATCTTCTGTCGTC 58.566 43.478 0.00 0.00 0.00 4.20
5205 6673 1.135139 GCATCTTCTGTCGTCTGCCTA 59.865 52.381 0.00 0.00 0.00 3.93
5218 6686 3.683340 CGTCTGCCTAGTTTTAAACCCTC 59.317 47.826 4.01 0.00 0.00 4.30
5219 6687 4.562963 CGTCTGCCTAGTTTTAAACCCTCT 60.563 45.833 4.01 0.00 0.00 3.69
5220 6688 4.695928 GTCTGCCTAGTTTTAAACCCTCTG 59.304 45.833 4.01 0.00 0.00 3.35
5221 6689 3.418047 TGCCTAGTTTTAAACCCTCTGC 58.582 45.455 4.01 2.03 0.00 4.26
5222 6690 2.753452 GCCTAGTTTTAAACCCTCTGCC 59.247 50.000 4.01 0.00 0.00 4.85
5223 6691 3.007635 CCTAGTTTTAAACCCTCTGCCG 58.992 50.000 4.01 0.00 0.00 5.69
5224 6692 1.244816 AGTTTTAAACCCTCTGCCGC 58.755 50.000 4.01 0.00 0.00 6.53
5225 6693 0.242825 GTTTTAAACCCTCTGCCGCC 59.757 55.000 0.00 0.00 0.00 6.13
5226 6694 0.111639 TTTTAAACCCTCTGCCGCCT 59.888 50.000 0.00 0.00 0.00 5.52
5227 6695 0.985760 TTTAAACCCTCTGCCGCCTA 59.014 50.000 0.00 0.00 0.00 3.93
5228 6696 0.251073 TTAAACCCTCTGCCGCCTAC 59.749 55.000 0.00 0.00 0.00 3.18
5229 6697 1.619807 TAAACCCTCTGCCGCCTACC 61.620 60.000 0.00 0.00 0.00 3.18
5230 6698 3.925914 AACCCTCTGCCGCCTACCT 62.926 63.158 0.00 0.00 0.00 3.08
5231 6699 2.123425 CCCTCTGCCGCCTACCTA 60.123 66.667 0.00 0.00 0.00 3.08
5232 6700 2.203771 CCCTCTGCCGCCTACCTAG 61.204 68.421 0.00 0.00 0.00 3.02
5233 6701 1.455959 CCTCTGCCGCCTACCTAGT 60.456 63.158 0.00 0.00 0.00 2.57
5234 6702 1.043673 CCTCTGCCGCCTACCTAGTT 61.044 60.000 0.00 0.00 0.00 2.24
5235 6703 0.824759 CTCTGCCGCCTACCTAGTTT 59.175 55.000 0.00 0.00 0.00 2.66
5236 6704 1.207329 CTCTGCCGCCTACCTAGTTTT 59.793 52.381 0.00 0.00 0.00 2.43
5237 6705 2.429610 CTCTGCCGCCTACCTAGTTTTA 59.570 50.000 0.00 0.00 0.00 1.52
5238 6706 2.833338 TCTGCCGCCTACCTAGTTTTAA 59.167 45.455 0.00 0.00 0.00 1.52
5239 6707 3.261390 TCTGCCGCCTACCTAGTTTTAAA 59.739 43.478 0.00 0.00 0.00 1.52
5240 6708 3.337358 TGCCGCCTACCTAGTTTTAAAC 58.663 45.455 0.00 0.00 0.00 2.01
5241 6709 2.679837 GCCGCCTACCTAGTTTTAAACC 59.320 50.000 4.01 0.00 0.00 3.27
5242 6710 3.273434 CCGCCTACCTAGTTTTAAACCC 58.727 50.000 4.01 0.00 0.00 4.11
5256 6724 1.663695 AAACCCTGTGACTGTTGTCG 58.336 50.000 0.00 0.00 45.70 4.35
5258 6726 1.048601 ACCCTGTGACTGTTGTCGAT 58.951 50.000 0.00 0.00 45.70 3.59
5262 6730 2.987149 CCTGTGACTGTTGTCGATGTAC 59.013 50.000 0.00 0.00 45.70 2.90
5266 6734 3.192001 GTGACTGTTGTCGATGTACCCTA 59.808 47.826 0.00 0.00 45.70 3.53
5284 6752 4.020128 ACCCTAAAACTTGTTGGTTGCAAA 60.020 37.500 0.00 0.00 0.00 3.68
5306 6774 5.594199 ACTTCCCATAAACTGTAAACCCT 57.406 39.130 0.00 0.00 0.00 4.34
5309 6777 4.668636 TCCCATAAACTGTAAACCCTTGG 58.331 43.478 0.00 0.00 0.00 3.61
5313 6781 5.047590 CCATAAACTGTAAACCCTTGGAACC 60.048 44.000 0.00 0.00 0.00 3.62
5314 6782 2.670019 ACTGTAAACCCTTGGAACCC 57.330 50.000 0.00 0.00 0.00 4.11
5329 6797 1.057851 AACCCTCCCTTCGAACACCA 61.058 55.000 0.00 0.00 0.00 4.17
5334 6802 2.170607 CCTCCCTTCGAACACCACATAT 59.829 50.000 0.00 0.00 0.00 1.78
5341 6809 3.000041 TCGAACACCACATATCACTTGC 59.000 45.455 0.00 0.00 0.00 4.01
5415 6906 3.088194 ACAACAAGCAATGAAGCACAG 57.912 42.857 0.00 0.00 36.85 3.66
5420 6911 1.612676 AGCAATGAAGCACAGAAGCA 58.387 45.000 0.00 0.00 36.85 3.91
5549 7495 4.263243 GCCCATCTTCTGCTATATGAAGGT 60.263 45.833 0.00 0.00 39.85 3.50
5554 7500 8.133627 CCATCTTCTGCTATATGAAGGTTTTTG 58.866 37.037 0.00 0.00 39.85 2.44
5558 7504 3.704061 TGCTATATGAAGGTTTTTGCCCC 59.296 43.478 0.00 0.00 0.00 5.80
5562 7508 1.703411 TGAAGGTTTTTGCCCCAGAG 58.297 50.000 0.00 0.00 0.00 3.35
5573 7521 3.652057 TGCCCCAGAGAAAATAAGAGG 57.348 47.619 0.00 0.00 0.00 3.69
5575 7523 3.788142 TGCCCCAGAGAAAATAAGAGGAT 59.212 43.478 0.00 0.00 0.00 3.24
5577 7525 4.385754 GCCCCAGAGAAAATAAGAGGATGT 60.386 45.833 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.958822 ACCGAACCCAACTTCAATGC 59.041 50.000 0.00 0.00 0.00 3.56
23 24 8.594881 AGATGGAATAAAGTATTTCGCTACAG 57.405 34.615 0.00 0.00 40.09 2.74
27 28 6.201044 CGTGAGATGGAATAAAGTATTTCGCT 59.799 38.462 0.00 0.00 40.09 4.93
33 34 5.670485 TGCACGTGAGATGGAATAAAGTAT 58.330 37.500 22.23 0.00 0.00 2.12
36 37 6.347969 CCATATGCACGTGAGATGGAATAAAG 60.348 42.308 27.10 8.39 39.61 1.85
84 111 7.289317 TGACCCGAACTTGATCCTAGTTATAAT 59.711 37.037 9.55 0.00 36.04 1.28
87 114 4.960469 TGACCCGAACTTGATCCTAGTTAT 59.040 41.667 9.55 0.00 36.04 1.89
88 115 4.159135 GTGACCCGAACTTGATCCTAGTTA 59.841 45.833 9.55 0.00 36.04 2.24
89 116 3.056035 GTGACCCGAACTTGATCCTAGTT 60.056 47.826 9.38 9.38 38.49 2.24
116 143 3.059800 GGTGTTGAACTTGACGAAGCTAC 60.060 47.826 0.00 0.00 31.68 3.58
122 149 2.388310 TGTGGTGTTGAACTTGACGA 57.612 45.000 0.00 0.00 0.00 4.20
160 187 5.722021 AGCGGGATGTTTAAATTGTCTTT 57.278 34.783 0.00 0.00 0.00 2.52
167 194 4.236527 AGAGGAAGCGGGATGTTTAAAT 57.763 40.909 0.00 0.00 0.00 1.40
181 208 2.901209 CGTATACACGCGTAGAGGAAG 58.099 52.381 13.44 0.00 42.05 3.46
219 246 0.320421 TGTGCGTTTCAGAGCCTACC 60.320 55.000 0.00 0.00 0.00 3.18
282 461 1.669115 CAAGTCGACACCTGCCTGG 60.669 63.158 19.50 0.00 42.93 4.45
284 463 1.407656 TTCCAAGTCGACACCTGCCT 61.408 55.000 19.50 0.00 0.00 4.75
285 464 0.534203 TTTCCAAGTCGACACCTGCC 60.534 55.000 19.50 0.00 0.00 4.85
346 784 3.675348 TTCGGAAGGGAGGTGATACTA 57.325 47.619 0.00 0.00 0.00 1.82
348 786 3.840124 AATTCGGAAGGGAGGTGATAC 57.160 47.619 0.00 0.00 0.00 2.24
370 808 4.034510 GCGAAAGGACTGAAATGTATCCAG 59.965 45.833 0.00 0.00 33.33 3.86
377 815 1.533625 TGGGCGAAAGGACTGAAATG 58.466 50.000 0.00 0.00 0.00 2.32
378 816 2.094675 CATGGGCGAAAGGACTGAAAT 58.905 47.619 0.00 0.00 0.00 2.17
411 849 2.480845 GTCAGCTTGTTGTACTCCGTT 58.519 47.619 0.00 0.00 0.00 4.44
465 1512 6.428159 GCTAATCATTGTCCGATTCTGGTAAT 59.572 38.462 0.00 0.00 34.89 1.89
469 1516 3.185188 CGCTAATCATTGTCCGATTCTGG 59.815 47.826 0.00 0.00 34.89 3.86
473 1520 1.873591 GGCGCTAATCATTGTCCGATT 59.126 47.619 7.64 0.00 36.97 3.34
500 1547 4.279982 TGGATGGATGCTGATTTGCTTAA 58.720 39.130 0.00 0.00 0.00 1.85
536 1583 0.601311 GCGATGCCGGCTCTATTTCT 60.601 55.000 29.70 1.41 36.06 2.52
537 1584 1.862806 GCGATGCCGGCTCTATTTC 59.137 57.895 29.70 13.11 36.06 2.17
640 1899 2.525248 CGGTGATGATTCGGTGGCG 61.525 63.158 0.00 0.00 0.00 5.69
646 1905 1.860950 GTGATGGACGGTGATGATTCG 59.139 52.381 0.00 0.00 0.00 3.34
663 1922 2.280797 GGCTCTTGTGTGGCGTGA 60.281 61.111 0.00 0.00 0.00 4.35
668 1927 2.738521 CGACGGGCTCTTGTGTGG 60.739 66.667 0.00 0.00 0.00 4.17
678 1937 4.593864 GATGGGAGAGCGACGGGC 62.594 72.222 0.00 0.00 44.05 6.13
907 2195 1.139853 CTATTCTGGTGGGAGCCTCAC 59.860 57.143 0.00 0.00 34.61 3.51
1048 2350 0.904865 ATCTTCTCCTCACCGCCACA 60.905 55.000 0.00 0.00 0.00 4.17
1146 2448 3.227276 CGGGGAGTCATCTCGGGG 61.227 72.222 0.00 0.00 41.26 5.73
1208 2510 2.906897 CCCAACACGCACCAGCTT 60.907 61.111 0.00 0.00 39.10 3.74
1212 2514 3.293714 CATGCCCAACACGCACCA 61.294 61.111 0.00 0.00 39.49 4.17
1255 2568 3.591835 GCACACCAACACACCCGG 61.592 66.667 0.00 0.00 0.00 5.73
1258 2571 2.407210 CACGCACACCAACACACC 59.593 61.111 0.00 0.00 0.00 4.16
1276 2589 3.414700 GTGGCTGCTCGAACACCG 61.415 66.667 0.00 0.00 40.25 4.94
1392 2705 1.410932 CGGGGAATTAATCAGGGGCAA 60.411 52.381 0.00 0.00 0.00 4.52
1420 2733 6.079712 AGCCACCTTATTAGAAAACCAGAT 57.920 37.500 0.00 0.00 0.00 2.90
1424 2737 4.462834 AGCAAGCCACCTTATTAGAAAACC 59.537 41.667 0.00 0.00 0.00 3.27
1436 2749 1.130054 TCTGGAGAAGCAAGCCACCT 61.130 55.000 0.00 0.00 0.00 4.00
1512 2825 2.102357 CCGGACACCGTCGAGATG 59.898 66.667 0.00 0.00 46.80 2.90
1673 2989 2.431782 ACAATTCAAGCAACTGCCTTGT 59.568 40.909 0.00 0.00 43.38 3.16
1695 3011 2.305635 AGTTATGGCATGGTCTGTGTGA 59.694 45.455 10.98 0.00 0.00 3.58
1709 3025 4.882671 AAGCGCAGTCATTAAGTTATGG 57.117 40.909 11.47 0.00 0.00 2.74
1738 3054 1.130186 GAGCAAAGAGTAGCAGCAAGC 59.870 52.381 0.00 0.00 46.19 4.01
1739 3055 2.420642 TGAGCAAAGAGTAGCAGCAAG 58.579 47.619 0.00 0.00 0.00 4.01
1741 3057 2.775911 ATGAGCAAAGAGTAGCAGCA 57.224 45.000 0.00 0.00 0.00 4.41
1742 3058 5.747951 AATAATGAGCAAAGAGTAGCAGC 57.252 39.130 0.00 0.00 0.00 5.25
1743 3059 7.279536 TCTGAAATAATGAGCAAAGAGTAGCAG 59.720 37.037 0.00 0.00 0.00 4.24
1744 3060 7.105588 TCTGAAATAATGAGCAAAGAGTAGCA 58.894 34.615 0.00 0.00 0.00 3.49
1745 3061 7.545362 TCTGAAATAATGAGCAAAGAGTAGC 57.455 36.000 0.00 0.00 0.00 3.58
1748 3064 9.064706 CCATATCTGAAATAATGAGCAAAGAGT 57.935 33.333 0.00 0.00 0.00 3.24
1749 3065 8.021973 GCCATATCTGAAATAATGAGCAAAGAG 58.978 37.037 0.00 0.00 0.00 2.85
1750 3066 7.503230 TGCCATATCTGAAATAATGAGCAAAGA 59.497 33.333 0.00 0.00 0.00 2.52
1751 3067 7.594015 GTGCCATATCTGAAATAATGAGCAAAG 59.406 37.037 0.00 0.00 0.00 2.77
1753 3069 6.774170 AGTGCCATATCTGAAATAATGAGCAA 59.226 34.615 0.00 0.00 0.00 3.91
1754 3070 6.301486 AGTGCCATATCTGAAATAATGAGCA 58.699 36.000 0.00 0.00 0.00 4.26
1763 3079 8.985315 ATCAAATTCTAGTGCCATATCTGAAA 57.015 30.769 0.00 0.00 0.00 2.69
1771 3099 5.839621 GATGCAATCAAATTCTAGTGCCAT 58.160 37.500 9.16 4.46 44.70 4.40
1839 3168 8.218338 AGTGATTTATAAGCAGAAATGAGTGG 57.782 34.615 0.00 0.00 0.00 4.00
2027 3356 3.054802 AGCCTTCCTTGACAGATACCTTG 60.055 47.826 0.00 0.00 0.00 3.61
2057 3386 1.676057 GAACAGTCACAGACGACTCG 58.324 55.000 0.00 0.00 44.49 4.18
2126 3455 1.016130 CGATTGAAGCGCTCACCTGT 61.016 55.000 12.06 0.00 32.21 4.00
2196 3622 2.484264 GGCAATCACAGGAACACTACAC 59.516 50.000 0.00 0.00 0.00 2.90
2234 3661 7.199766 CACAACTAAGAAAGCACCAACAAATA 58.800 34.615 0.00 0.00 0.00 1.40
2315 3742 8.660435 AGGTACTTTGAGTGTTATATGGCATAT 58.340 33.333 22.58 22.58 27.25 1.78
2365 3792 4.124851 ACAGAATACTCGGCTTACTTGG 57.875 45.455 0.00 0.00 0.00 3.61
2583 4010 2.064434 TGCAGACAATGAAACCACCA 57.936 45.000 0.00 0.00 0.00 4.17
2712 4139 0.464870 CAGGCTCTCCAGTCTCCATG 59.535 60.000 0.00 0.00 29.27 3.66
2713 4140 1.336632 GCAGGCTCTCCAGTCTCCAT 61.337 60.000 0.00 0.00 29.27 3.41
2930 4357 7.816995 CCAGTTCCAAAATGAAATATCCGAAAA 59.183 33.333 0.00 0.00 0.00 2.29
2987 4414 6.317642 AGCAAACCGCAATATTATGTAGTGAA 59.682 34.615 0.00 0.00 46.13 3.18
2988 4415 5.820423 AGCAAACCGCAATATTATGTAGTGA 59.180 36.000 0.00 0.00 46.13 3.41
3008 4435 4.201812 GCTGCGATAAATAGTTCACAGCAA 60.202 41.667 6.77 0.00 46.45 3.91
3218 4645 7.042523 CCTTTGTGACAAAGCCAAATTAGAAAG 60.043 37.037 27.84 9.47 0.00 2.62
3287 4715 5.227908 CCATCTAGCCATTTGATTGAATGC 58.772 41.667 0.00 0.00 36.04 3.56
3371 4799 2.097825 ACAGGAGCATGCAAAAGATCC 58.902 47.619 21.98 16.51 40.54 3.36
3509 4937 3.776616 TGCAAAACAGGCAAAAGGG 57.223 47.368 0.00 0.00 38.54 3.95
3519 4947 9.244283 AGACACCATCTTAGCTTTTGCAAAACA 62.244 37.037 20.46 6.30 41.11 2.83
3752 5180 2.418746 CCACCGGACTATTCAACCAGAG 60.419 54.545 9.46 0.00 0.00 3.35
3753 5181 1.553248 CCACCGGACTATTCAACCAGA 59.447 52.381 9.46 0.00 0.00 3.86
3754 5182 1.553248 TCCACCGGACTATTCAACCAG 59.447 52.381 9.46 0.00 0.00 4.00
3755 5183 1.553248 CTCCACCGGACTATTCAACCA 59.447 52.381 9.46 0.00 0.00 3.67
3756 5184 1.553704 ACTCCACCGGACTATTCAACC 59.446 52.381 9.46 0.00 0.00 3.77
3757 5185 4.460948 TTACTCCACCGGACTATTCAAC 57.539 45.455 9.46 0.00 0.00 3.18
3758 5186 6.989155 ATATTACTCCACCGGACTATTCAA 57.011 37.500 9.46 0.00 0.00 2.69
3759 5187 6.989155 AATATTACTCCACCGGACTATTCA 57.011 37.500 9.46 0.00 0.00 2.57
3760 5188 9.939802 AATAAATATTACTCCACCGGACTATTC 57.060 33.333 9.46 0.00 0.00 1.75
3763 5191 9.550406 CAAAATAAATATTACTCCACCGGACTA 57.450 33.333 9.46 0.00 0.00 2.59
3764 5192 8.050930 ACAAAATAAATATTACTCCACCGGACT 58.949 33.333 9.46 0.00 0.00 3.85
3765 5193 8.217131 ACAAAATAAATATTACTCCACCGGAC 57.783 34.615 9.46 0.00 0.00 4.79
3766 5194 8.679100 CAACAAAATAAATATTACTCCACCGGA 58.321 33.333 9.46 0.00 0.00 5.14
3767 5195 7.434013 GCAACAAAATAAATATTACTCCACCGG 59.566 37.037 0.00 0.00 0.00 5.28
3768 5196 8.188139 AGCAACAAAATAAATATTACTCCACCG 58.812 33.333 0.00 0.00 0.00 4.94
3769 5197 9.869757 AAGCAACAAAATAAATATTACTCCACC 57.130 29.630 0.00 0.00 0.00 4.61
3887 5315 4.640201 CAGTTGGTTTTGTCCAGAGAAGAA 59.360 41.667 0.00 0.00 38.80 2.52
3944 5372 7.227156 GGCTTATGAATATCTTTCTTCCCTCA 58.773 38.462 0.00 0.00 0.00 3.86
3969 5397 4.715297 ACCATCTAAGTTACAGTAGTGGGG 59.285 45.833 1.92 0.00 0.00 4.96
4112 5541 9.696917 GTATCCAACATTTCTTTTCTCACAAAT 57.303 29.630 0.00 0.00 0.00 2.32
4116 5545 7.809806 CCAAGTATCCAACATTTCTTTTCTCAC 59.190 37.037 0.00 0.00 0.00 3.51
4132 5561 3.196901 ACTGTACGAATGCCAAGTATCCA 59.803 43.478 0.00 0.00 0.00 3.41
4195 5624 3.892588 TGCTATTCGGGGAAAACACTTTT 59.107 39.130 0.00 0.00 35.12 2.27
4196 5625 3.492337 TGCTATTCGGGGAAAACACTTT 58.508 40.909 0.00 0.00 0.00 2.66
4688 6117 5.901552 TCACAGCTGACATAATCATACGAA 58.098 37.500 23.35 0.00 36.48 3.85
4803 6232 3.435327 TCATTAGGCTTGTGTTTGTAGCG 59.565 43.478 0.00 0.00 35.77 4.26
4838 6267 8.781196 ACAGAATTCATGAGCATACAATGATAC 58.219 33.333 8.44 0.00 0.00 2.24
4839 6268 8.913487 ACAGAATTCATGAGCATACAATGATA 57.087 30.769 8.44 0.00 0.00 2.15
4840 6269 7.818997 ACAGAATTCATGAGCATACAATGAT 57.181 32.000 8.44 0.00 0.00 2.45
4841 6270 7.634671 AACAGAATTCATGAGCATACAATGA 57.365 32.000 8.44 0.00 0.00 2.57
4842 6271 8.592155 CAAAACAGAATTCATGAGCATACAATG 58.408 33.333 8.44 0.00 0.00 2.82
4843 6272 8.308931 ACAAAACAGAATTCATGAGCATACAAT 58.691 29.630 8.44 0.00 0.00 2.71
4844 6273 7.595875 CACAAAACAGAATTCATGAGCATACAA 59.404 33.333 8.44 0.00 0.00 2.41
4845 6274 7.085746 CACAAAACAGAATTCATGAGCATACA 58.914 34.615 8.44 0.00 0.00 2.29
4846 6275 7.086376 ACACAAAACAGAATTCATGAGCATAC 58.914 34.615 8.44 0.00 0.00 2.39
4847 6276 7.218228 ACACAAAACAGAATTCATGAGCATA 57.782 32.000 8.44 0.00 0.00 3.14
4848 6277 6.092955 ACACAAAACAGAATTCATGAGCAT 57.907 33.333 8.44 0.00 0.00 3.79
4849 6278 5.518848 ACACAAAACAGAATTCATGAGCA 57.481 34.783 8.44 0.00 0.00 4.26
4850 6279 7.307694 TGATACACAAAACAGAATTCATGAGC 58.692 34.615 8.44 0.00 0.00 4.26
4851 6280 9.850628 AATGATACACAAAACAGAATTCATGAG 57.149 29.630 8.44 0.00 0.00 2.90
4852 6281 9.628746 CAATGATACACAAAACAGAATTCATGA 57.371 29.630 8.44 0.00 0.00 3.07
4853 6282 9.414295 ACAATGATACACAAAACAGAATTCATG 57.586 29.630 8.44 5.85 0.00 3.07
4857 6286 9.357652 GCATACAATGATACACAAAACAGAATT 57.642 29.630 0.00 0.00 0.00 2.17
4858 6287 8.742777 AGCATACAATGATACACAAAACAGAAT 58.257 29.630 0.00 0.00 0.00 2.40
4859 6288 8.109705 AGCATACAATGATACACAAAACAGAA 57.890 30.769 0.00 0.00 0.00 3.02
4860 6289 7.607607 AGAGCATACAATGATACACAAAACAGA 59.392 33.333 0.00 0.00 0.00 3.41
4861 6290 7.755591 AGAGCATACAATGATACACAAAACAG 58.244 34.615 0.00 0.00 0.00 3.16
4862 6291 7.148255 GGAGAGCATACAATGATACACAAAACA 60.148 37.037 0.00 0.00 0.00 2.83
4863 6292 7.148255 TGGAGAGCATACAATGATACACAAAAC 60.148 37.037 0.00 0.00 0.00 2.43
4864 6293 6.883756 TGGAGAGCATACAATGATACACAAAA 59.116 34.615 0.00 0.00 0.00 2.44
4865 6294 6.413892 TGGAGAGCATACAATGATACACAAA 58.586 36.000 0.00 0.00 0.00 2.83
4866 6295 5.988287 TGGAGAGCATACAATGATACACAA 58.012 37.500 0.00 0.00 0.00 3.33
4867 6296 5.612725 TGGAGAGCATACAATGATACACA 57.387 39.130 0.00 0.00 0.00 3.72
4868 6297 6.707608 TCAATGGAGAGCATACAATGATACAC 59.292 38.462 0.00 0.00 0.00 2.90
4869 6298 6.829849 TCAATGGAGAGCATACAATGATACA 58.170 36.000 0.00 0.00 0.00 2.29
4884 6313 8.101309 TCTTTGGGTAATCTAATCAATGGAGA 57.899 34.615 0.00 0.00 0.00 3.71
4909 6338 2.629617 CAAACACCATGGAGGAAAAGCT 59.370 45.455 21.47 0.00 41.22 3.74
4910 6339 2.867647 GCAAACACCATGGAGGAAAAGC 60.868 50.000 21.47 9.51 41.22 3.51
4915 6344 1.894466 CATTGCAAACACCATGGAGGA 59.106 47.619 21.47 0.72 41.22 3.71
4916 6345 1.673626 GCATTGCAAACACCATGGAGG 60.674 52.381 21.47 12.77 45.67 4.30
4917 6346 1.001068 TGCATTGCAAACACCATGGAG 59.999 47.619 21.47 14.24 34.76 3.86
4918 6347 1.046204 TGCATTGCAAACACCATGGA 58.954 45.000 21.47 0.00 34.76 3.41
4919 6348 1.880271 TTGCATTGCAAACACCATGG 58.120 45.000 21.24 11.19 45.96 3.66
5021 6489 2.026014 CAGTGTTGTGGCGTTGGC 59.974 61.111 0.00 0.00 38.90 4.52
5046 6514 1.400494 GGCGTTGGCGTCTAATTCATT 59.600 47.619 0.00 0.00 39.99 2.57
5047 6515 1.014352 GGCGTTGGCGTCTAATTCAT 58.986 50.000 0.00 0.00 39.99 2.57
5048 6516 0.320858 TGGCGTTGGCGTCTAATTCA 60.321 50.000 0.00 0.00 44.07 2.57
5049 6517 0.096454 GTGGCGTTGGCGTCTAATTC 59.904 55.000 0.00 0.00 44.07 2.17
5050 6518 0.604243 TGTGGCGTTGGCGTCTAATT 60.604 50.000 0.00 0.00 44.07 1.40
5051 6519 0.604243 TTGTGGCGTTGGCGTCTAAT 60.604 50.000 0.00 0.00 44.07 1.73
5052 6520 1.227586 TTGTGGCGTTGGCGTCTAA 60.228 52.632 0.00 0.00 44.07 2.10
5053 6521 1.957186 GTTGTGGCGTTGGCGTCTA 60.957 57.895 0.00 0.00 44.07 2.59
5054 6522 3.276846 GTTGTGGCGTTGGCGTCT 61.277 61.111 0.00 0.00 44.07 4.18
5055 6523 3.578272 TGTTGTGGCGTTGGCGTC 61.578 61.111 0.00 0.00 43.99 5.19
5056 6524 3.883180 GTGTTGTGGCGTTGGCGT 61.883 61.111 0.00 0.00 41.24 5.68
5057 6525 3.582120 AGTGTTGTGGCGTTGGCG 61.582 61.111 0.00 0.00 41.24 5.69
5058 6526 2.026014 CAGTGTTGTGGCGTTGGC 59.974 61.111 0.00 0.00 38.90 4.52
5059 6527 1.163420 TAGCAGTGTTGTGGCGTTGG 61.163 55.000 0.00 0.00 0.00 3.77
5060 6528 0.874390 ATAGCAGTGTTGTGGCGTTG 59.126 50.000 0.00 0.00 0.00 4.10
5061 6529 0.874390 CATAGCAGTGTTGTGGCGTT 59.126 50.000 0.00 0.00 0.00 4.84
5062 6530 0.955428 CCATAGCAGTGTTGTGGCGT 60.955 55.000 9.75 0.00 0.00 5.68
5063 6531 1.796151 CCATAGCAGTGTTGTGGCG 59.204 57.895 9.75 0.00 0.00 5.69
5065 6533 2.945510 TGCCATAGCAGTGTTGTGG 58.054 52.632 16.93 16.93 46.52 4.17
5075 6543 5.466728 TCTTCGTCTAATTCATTGCCATAGC 59.533 40.000 0.00 0.00 40.48 2.97
5076 6544 7.386025 TCATCTTCGTCTAATTCATTGCCATAG 59.614 37.037 0.00 0.00 0.00 2.23
5077 6545 7.216494 TCATCTTCGTCTAATTCATTGCCATA 58.784 34.615 0.00 0.00 0.00 2.74
5078 6546 6.057533 TCATCTTCGTCTAATTCATTGCCAT 58.942 36.000 0.00 0.00 0.00 4.40
5079 6547 5.427378 TCATCTTCGTCTAATTCATTGCCA 58.573 37.500 0.00 0.00 0.00 4.92
5080 6548 5.991328 TCATCTTCGTCTAATTCATTGCC 57.009 39.130 0.00 0.00 0.00 4.52
5081 6549 9.591404 CTTTATCATCTTCGTCTAATTCATTGC 57.409 33.333 0.00 0.00 0.00 3.56
5094 6562 4.991687 GGGCTAAGGACTTTATCATCTTCG 59.008 45.833 0.00 0.00 0.00 3.79
5104 6572 2.882761 GTTCGTTTGGGCTAAGGACTTT 59.117 45.455 0.00 0.00 0.00 2.66
5109 6577 1.664151 GATCGTTCGTTTGGGCTAAGG 59.336 52.381 0.00 0.00 0.00 2.69
5181 6649 3.452474 GCAGACGACAGAAGATGCTTAT 58.548 45.455 0.00 0.00 0.00 1.73
5195 6663 3.325716 AGGGTTTAAAACTAGGCAGACGA 59.674 43.478 2.72 0.00 0.00 4.20
5198 6666 4.806286 GCAGAGGGTTTAAAACTAGGCAGA 60.806 45.833 2.72 0.00 0.00 4.26
5199 6667 3.440522 GCAGAGGGTTTAAAACTAGGCAG 59.559 47.826 2.72 0.00 0.00 4.85
5205 6673 1.244816 GCGGCAGAGGGTTTAAAACT 58.755 50.000 2.72 0.00 0.00 2.66
5218 6686 2.973694 TAAAACTAGGTAGGCGGCAG 57.026 50.000 13.08 0.96 0.00 4.85
5219 6687 3.337358 GTTTAAAACTAGGTAGGCGGCA 58.663 45.455 13.08 0.00 0.00 5.69
5220 6688 2.679837 GGTTTAAAACTAGGTAGGCGGC 59.320 50.000 0.00 0.00 0.00 6.53
5221 6689 3.054875 AGGGTTTAAAACTAGGTAGGCGG 60.055 47.826 2.72 0.00 0.00 6.13
5222 6690 3.937079 CAGGGTTTAAAACTAGGTAGGCG 59.063 47.826 2.72 0.00 0.00 5.52
5223 6691 4.698780 CACAGGGTTTAAAACTAGGTAGGC 59.301 45.833 2.72 0.00 0.00 3.93
5224 6692 5.936372 GTCACAGGGTTTAAAACTAGGTAGG 59.064 44.000 2.72 0.00 0.00 3.18
5225 6693 6.649557 CAGTCACAGGGTTTAAAACTAGGTAG 59.350 42.308 2.72 0.00 0.00 3.18
5226 6694 6.100134 ACAGTCACAGGGTTTAAAACTAGGTA 59.900 38.462 2.72 0.00 0.00 3.08
5227 6695 5.104235 ACAGTCACAGGGTTTAAAACTAGGT 60.104 40.000 2.72 0.00 0.00 3.08
5228 6696 5.374071 ACAGTCACAGGGTTTAAAACTAGG 58.626 41.667 2.72 0.00 0.00 3.02
5229 6697 6.317893 ACAACAGTCACAGGGTTTAAAACTAG 59.682 38.462 2.72 0.00 0.00 2.57
5230 6698 6.181908 ACAACAGTCACAGGGTTTAAAACTA 58.818 36.000 2.72 0.00 0.00 2.24
5231 6699 5.014202 ACAACAGTCACAGGGTTTAAAACT 58.986 37.500 2.72 0.00 0.00 2.66
5232 6700 5.319140 ACAACAGTCACAGGGTTTAAAAC 57.681 39.130 0.00 0.00 0.00 2.43
5233 6701 4.095185 CGACAACAGTCACAGGGTTTAAAA 59.905 41.667 0.00 0.00 32.50 1.52
5234 6702 3.623960 CGACAACAGTCACAGGGTTTAAA 59.376 43.478 0.00 0.00 32.50 1.52
5235 6703 3.118702 TCGACAACAGTCACAGGGTTTAA 60.119 43.478 0.00 0.00 32.50 1.52
5236 6704 2.431419 TCGACAACAGTCACAGGGTTTA 59.569 45.455 0.00 0.00 32.50 2.01
5237 6705 1.208535 TCGACAACAGTCACAGGGTTT 59.791 47.619 0.00 0.00 32.50 3.27
5238 6706 0.828022 TCGACAACAGTCACAGGGTT 59.172 50.000 0.00 0.00 32.50 4.11
5239 6707 1.048601 ATCGACAACAGTCACAGGGT 58.951 50.000 0.00 0.00 32.50 4.34
5240 6708 1.270305 ACATCGACAACAGTCACAGGG 60.270 52.381 0.00 0.00 32.50 4.45
5241 6709 2.154854 ACATCGACAACAGTCACAGG 57.845 50.000 0.00 0.00 32.50 4.00
5242 6710 2.987149 GGTACATCGACAACAGTCACAG 59.013 50.000 0.00 0.00 32.50 3.66
5256 6724 6.443792 CAACCAACAAGTTTTAGGGTACATC 58.556 40.000 0.00 0.00 0.00 3.06
5258 6726 4.098196 GCAACCAACAAGTTTTAGGGTACA 59.902 41.667 0.00 0.00 0.00 2.90
5262 6730 3.810310 TGCAACCAACAAGTTTTAGGG 57.190 42.857 0.00 0.00 0.00 3.53
5266 6734 4.454161 GGAAGTTTGCAACCAACAAGTTTT 59.546 37.500 0.00 0.00 0.00 2.43
5284 6752 5.594199 AGGGTTTACAGTTTATGGGAAGT 57.406 39.130 0.00 0.00 0.00 3.01
5293 6761 3.052414 AGGGTTCCAAGGGTTTACAGTTT 60.052 43.478 0.00 0.00 0.00 2.66
5306 6774 0.399075 GTTCGAAGGGAGGGTTCCAA 59.601 55.000 0.00 0.00 45.98 3.53
5309 6777 0.321387 GGTGTTCGAAGGGAGGGTTC 60.321 60.000 0.00 0.00 0.00 3.62
5313 6781 0.324943 ATGTGGTGTTCGAAGGGAGG 59.675 55.000 0.00 0.00 0.00 4.30
5314 6782 3.118775 TGATATGTGGTGTTCGAAGGGAG 60.119 47.826 0.00 0.00 0.00 4.30
5334 6802 1.003355 GCACTGCTAGGGCAAGTGA 60.003 57.895 17.59 0.00 45.95 3.41
5341 6809 0.737219 GCTCATTTGCACTGCTAGGG 59.263 55.000 1.98 0.00 0.00 3.53
5415 6906 1.401199 GCTCTTCTGCTCCATTGCTTC 59.599 52.381 0.00 0.00 0.00 3.86
5420 6911 2.291411 ACCAATGCTCTTCTGCTCCATT 60.291 45.455 0.00 0.00 0.00 3.16
5461 7406 2.092914 CCCTCCGGTATTTCTTTGCTCT 60.093 50.000 0.00 0.00 0.00 4.09
5477 7422 4.748144 CAGCAAGTGGCCCCCTCC 62.748 72.222 0.00 0.00 46.50 4.30
5524 7470 2.005451 CATATAGCAGAAGATGGGCGC 58.995 52.381 0.00 0.00 0.00 6.53
5549 7495 5.245977 CCTCTTATTTTCTCTGGGGCAAAAA 59.754 40.000 0.00 0.00 0.00 1.94
5554 7500 3.933861 TCCTCTTATTTTCTCTGGGGC 57.066 47.619 0.00 0.00 0.00 5.80
5558 7504 7.010923 CCGAAAGACATCCTCTTATTTTCTCTG 59.989 40.741 0.00 0.00 38.37 3.35
5562 7508 6.364945 CCCGAAAGACATCCTCTTATTTTC 57.635 41.667 0.00 0.00 38.37 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.