Multiple sequence alignment - TraesCS5A01G212100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G212100 chr5A 100.000 3588 0 0 1 3588 427320161 427323748 0.000000e+00 6626
1 TraesCS5A01G212100 chr5A 93.699 2079 91 22 855 2916 427205782 427207837 0.000000e+00 3077
2 TraesCS5A01G212100 chr5A 91.902 778 42 8 1 761 427204967 427205740 0.000000e+00 1068
3 TraesCS5A01G212100 chr5D 92.604 2853 122 30 1 2825 329434214 329431423 0.000000e+00 4017
4 TraesCS5A01G212100 chr5D 93.625 1553 87 6 1 1545 329277832 329276284 0.000000e+00 2309
5 TraesCS5A01G212100 chr5D 95.685 1066 40 3 1544 2603 329276202 329275137 0.000000e+00 1709
6 TraesCS5A01G212100 chr5D 91.906 593 33 3 2650 3229 329275139 329274549 0.000000e+00 815
7 TraesCS5A01G212100 chr5D 95.317 363 15 2 1 362 329434696 329434335 3.110000e-160 575
8 TraesCS5A01G212100 chr5B 95.579 1425 54 5 1544 2959 382381260 382379836 0.000000e+00 2274
9 TraesCS5A01G212100 chr5B 93.032 1550 92 10 1 1540 382383193 382381650 0.000000e+00 2250
10 TraesCS5A01G212100 chr5B 93.688 1521 62 19 1422 2928 382596364 382597864 0.000000e+00 2246
11 TraesCS5A01G212100 chr5B 93.393 1453 73 13 1 1434 382594256 382595704 0.000000e+00 2130
12 TraesCS5A01G212100 chr5B 92.998 814 48 6 1 808 382384813 382384003 0.000000e+00 1179
13 TraesCS5A01G212100 chr5B 77.778 369 57 20 827 1191 95199966 95199619 1.690000e-48 204
14 TraesCS5A01G212100 chr3B 86.828 372 36 8 901 1265 793140925 793141290 1.550000e-108 403
15 TraesCS5A01G212100 chr2D 81.569 255 39 6 838 1088 49050746 49050496 1.690000e-48 204
16 TraesCS5A01G212100 chr2D 91.026 78 5 1 1089 1166 612497562 612497637 1.760000e-18 104
17 TraesCS5A01G212100 chr7A 77.912 249 33 14 855 1099 29439358 29439588 6.250000e-28 135
18 TraesCS5A01G212100 chrUn 87.379 103 13 0 1244 1346 96703870 96703972 6.290000e-23 119
19 TraesCS5A01G212100 chr3D 89.362 94 6 2 3265 3354 4355923 4356016 8.140000e-22 115
20 TraesCS5A01G212100 chr3D 91.892 74 4 1 1093 1166 401020905 401020834 6.340000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G212100 chr5A 427320161 427323748 3587 False 6626.0 6626 100.000000 1 3588 1 chr5A.!!$F1 3587
1 TraesCS5A01G212100 chr5A 427204967 427207837 2870 False 2072.5 3077 92.800500 1 2916 2 chr5A.!!$F2 2915
2 TraesCS5A01G212100 chr5D 329431423 329434696 3273 True 2296.0 4017 93.960500 1 2825 2 chr5D.!!$R2 2824
3 TraesCS5A01G212100 chr5D 329274549 329277832 3283 True 1611.0 2309 93.738667 1 3229 3 chr5D.!!$R1 3228
4 TraesCS5A01G212100 chr5B 382594256 382597864 3608 False 2188.0 2246 93.540500 1 2928 2 chr5B.!!$F1 2927
5 TraesCS5A01G212100 chr5B 382379836 382384813 4977 True 1901.0 2274 93.869667 1 2959 3 chr5B.!!$R2 2958

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
516 994 0.107410 TGTCCTGTTCTTGTGGCGTT 60.107 50.0 0.00 0.00 0.0 4.84 F
995 3107 0.108138 CGGAAGTGATCGAAGGCCTT 60.108 55.0 20.65 20.65 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2004 5269 1.067295 AAGTTCATCCTCCACAGCCA 58.933 50.0 0.0 0.0 0.00 4.75 R
2716 5983 0.739462 CGCACATCGACCTAAGCCAA 60.739 55.0 0.0 0.0 41.67 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 130 4.038282 TCTGTACGCAGTTGTCTCCTTTAA 59.962 41.667 0.00 0.00 37.78 1.52
236 241 1.016130 ACGCTTGCTGATTGGTCTCG 61.016 55.000 0.00 0.00 0.00 4.04
242 247 1.202758 TGCTGATTGGTCTCGTTGGTT 60.203 47.619 0.00 0.00 0.00 3.67
320 786 1.101049 GCGCCCTTGCTTATAAGGCA 61.101 55.000 14.28 9.56 44.75 4.75
384 854 8.924303 GTTTCTAATTTGGCCCTATCCTTTTAT 58.076 33.333 0.00 0.00 0.00 1.40
458 936 4.240096 GTTCTGTTGCATTCTTCCATTGG 58.760 43.478 0.00 0.00 0.00 3.16
500 978 8.340230 CAAGAATTGTTAGTTCTTTTGGTGTC 57.660 34.615 0.00 0.00 42.38 3.67
513 991 0.465460 TGGTGTCCTGTTCTTGTGGC 60.465 55.000 0.00 0.00 0.00 5.01
516 994 0.107410 TGTCCTGTTCTTGTGGCGTT 60.107 50.000 0.00 0.00 0.00 4.84
517 995 1.139256 TGTCCTGTTCTTGTGGCGTTA 59.861 47.619 0.00 0.00 0.00 3.18
536 1014 6.702282 GGCGTTATCTACAGAAAGCTCTTATT 59.298 38.462 0.00 0.00 0.00 1.40
544 1022 9.944376 TCTACAGAAAGCTCTTATTGTTATGTT 57.056 29.630 0.00 0.00 0.00 2.71
614 1097 7.720957 TCATTTTTCTCAAGTTGGAGATCTCAA 59.279 33.333 23.85 10.78 43.10 3.02
686 1169 8.788325 TTAGAGTAAATAGCTTTCTTTGGGTC 57.212 34.615 0.00 0.00 0.00 4.46
688 1171 6.881602 AGAGTAAATAGCTTTCTTTGGGTCTG 59.118 38.462 0.00 0.00 0.00 3.51
693 1176 2.155279 GCTTTCTTTGGGTCTGTCTCC 58.845 52.381 0.00 0.00 0.00 3.71
703 1186 2.289506 GGGTCTGTCTCCAGGTGTTTAC 60.290 54.545 0.00 0.00 39.31 2.01
710 1193 0.250124 TCCAGGTGTTTACAGGCACG 60.250 55.000 0.00 0.00 36.54 5.34
730 1213 5.732247 GCACGACTGTTTATTTTGTTGGTCT 60.732 40.000 0.00 0.00 0.00 3.85
763 1246 6.005583 TCATGCAACTTCTGAATGAGTTTC 57.994 37.500 0.00 0.00 44.11 2.78
775 1258 6.017109 TCTGAATGAGTTTCTAAGGTGTTTGC 60.017 38.462 0.00 0.00 35.23 3.68
779 1262 6.131544 TGAGTTTCTAAGGTGTTTGCTTTC 57.868 37.500 0.00 0.00 0.00 2.62
780 1263 5.885912 TGAGTTTCTAAGGTGTTTGCTTTCT 59.114 36.000 0.00 0.00 0.00 2.52
875 2979 8.673711 GTCATGTAGTTGCTATTGGTGATTTAA 58.326 33.333 0.00 0.00 0.00 1.52
988 3100 0.454600 GTGCTACCGGAAGTGATCGA 59.545 55.000 9.46 0.00 0.00 3.59
990 3102 1.134367 TGCTACCGGAAGTGATCGAAG 59.866 52.381 9.46 0.00 0.00 3.79
995 3107 0.108138 CGGAAGTGATCGAAGGCCTT 60.108 55.000 20.65 20.65 0.00 4.35
1146 3258 2.289631 TGTAGTTGGCCATCTCACACTG 60.290 50.000 19.70 0.00 0.00 3.66
1170 3282 3.506096 CAGCAGCTGGATGTGCGG 61.506 66.667 17.12 0.00 44.78 5.69
1373 3488 7.551585 TGTTTGAAGAAACATTGCTTTTCCTA 58.448 30.769 0.00 0.00 45.26 2.94
1401 3519 7.100458 ACTTCTATGTAAAATGAATGGCACC 57.900 36.000 0.00 0.00 0.00 5.01
1403 3521 3.799281 ATGTAAAATGAATGGCACCGG 57.201 42.857 0.00 0.00 0.00 5.28
1527 4317 6.368791 CCACATGAGATTAAGAAACGTTCTCA 59.631 38.462 14.34 14.34 44.83 3.27
1640 4901 8.818141 TCTTCTGCTATTAAGAATTATCGTGG 57.182 34.615 0.00 0.00 33.34 4.94
1732 4993 1.891150 CTGGCTGGCAAAGAAAGTGAT 59.109 47.619 5.14 0.00 0.00 3.06
1747 5008 9.502091 AAAGAAAGTGATGCATACTACAAACTA 57.498 29.630 0.00 0.00 0.00 2.24
1798 5059 7.282585 CCTATGTCTTTGATGGTAGGATTTCA 58.717 38.462 0.00 0.00 32.35 2.69
1807 5068 7.147958 TGATGGTAGGATTTCATGGAATACA 57.852 36.000 11.73 1.59 0.00 2.29
2004 5269 5.914085 GTGCAGAAGAACGATATAGCAAT 57.086 39.130 0.00 0.00 32.03 3.56
2194 5459 6.479884 ACTTAAATCTGGCCTCCATCATATC 58.520 40.000 3.32 0.00 30.82 1.63
2212 5477 8.923683 CATCATATCACTGACATGATACTTGTC 58.076 37.037 11.65 9.70 42.84 3.18
2770 6047 2.736670 ACCTATTGGGAATGCAGGAC 57.263 50.000 0.00 0.00 38.76 3.85
2845 6132 3.287222 TGCCTTTTAGTGCTGTCAGTTT 58.713 40.909 0.93 0.00 0.00 2.66
2886 6173 9.185680 GTTTAAGGTTACATATTTCTCATGGGT 57.814 33.333 0.00 0.00 0.00 4.51
2916 6203 4.473444 TCTGAGATGCCTTTCCTGTTTTT 58.527 39.130 0.00 0.00 0.00 1.94
2924 6211 2.814336 CCTTTCCTGTTTTTCGAGGGAG 59.186 50.000 0.00 0.00 0.00 4.30
2928 6215 2.967201 TCCTGTTTTTCGAGGGAGTGTA 59.033 45.455 0.00 0.00 0.00 2.90
2961 6248 9.811995 AATGTTCATTCATGATTTACTGGAATG 57.188 29.630 0.00 0.00 43.72 2.67
2975 6262 2.422479 CTGGAATGCAGTGTGAAGATGG 59.578 50.000 0.00 0.00 0.00 3.51
2981 6268 2.072298 GCAGTGTGAAGATGGAGTGTC 58.928 52.381 0.00 0.00 0.00 3.67
2987 6274 0.179097 GAAGATGGAGTGTCGGGAGC 60.179 60.000 0.00 0.00 0.00 4.70
3135 6425 1.445582 CGGAAGGGTAGCACGTGTC 60.446 63.158 18.38 9.62 0.00 3.67
3144 6434 1.218875 TAGCACGTGTCGGTTTGCAG 61.219 55.000 18.38 0.00 37.44 4.41
3157 6447 2.956799 TTTGCAGCTGCGGAAGGACA 62.957 55.000 32.11 10.70 45.83 4.02
3158 6448 2.669569 GCAGCTGCGGAAGGACAA 60.670 61.111 25.23 0.00 0.00 3.18
3181 6471 1.565305 GCTGTAGCTTCGAGTCCATG 58.435 55.000 0.00 0.00 38.21 3.66
3190 6480 2.804697 TCGAGTCCATGTTTCGTTGA 57.195 45.000 9.57 0.00 35.90 3.18
3191 6481 2.400399 TCGAGTCCATGTTTCGTTGAC 58.600 47.619 9.57 0.51 35.90 3.18
3229 6519 2.265739 GTGCGTGCTCTGGGATGA 59.734 61.111 0.00 0.00 0.00 2.92
3230 6520 1.153289 GTGCGTGCTCTGGGATGAT 60.153 57.895 0.00 0.00 0.00 2.45
3231 6521 0.104855 GTGCGTGCTCTGGGATGATA 59.895 55.000 0.00 0.00 0.00 2.15
3232 6522 0.390492 TGCGTGCTCTGGGATGATAG 59.610 55.000 0.00 0.00 0.00 2.08
3233 6523 0.676184 GCGTGCTCTGGGATGATAGA 59.324 55.000 0.00 0.00 0.00 1.98
3234 6524 1.274728 GCGTGCTCTGGGATGATAGAT 59.725 52.381 0.00 0.00 0.00 1.98
3235 6525 2.493675 GCGTGCTCTGGGATGATAGATA 59.506 50.000 0.00 0.00 0.00 1.98
3236 6526 3.674682 GCGTGCTCTGGGATGATAGATAC 60.675 52.174 0.00 0.00 0.00 2.24
3237 6527 3.507622 CGTGCTCTGGGATGATAGATACA 59.492 47.826 0.00 0.00 0.00 2.29
3238 6528 4.380339 CGTGCTCTGGGATGATAGATACAG 60.380 50.000 0.00 0.00 0.00 2.74
3239 6529 4.081752 GTGCTCTGGGATGATAGATACAGG 60.082 50.000 0.00 0.00 0.00 4.00
3240 6530 4.202716 TGCTCTGGGATGATAGATACAGGA 60.203 45.833 0.00 0.00 0.00 3.86
3241 6531 4.159506 GCTCTGGGATGATAGATACAGGAC 59.840 50.000 0.00 0.00 0.00 3.85
3242 6532 5.328565 CTCTGGGATGATAGATACAGGACA 58.671 45.833 0.00 0.00 0.00 4.02
3243 6533 5.328565 TCTGGGATGATAGATACAGGACAG 58.671 45.833 0.00 0.00 0.00 3.51
3244 6534 4.420206 TGGGATGATAGATACAGGACAGG 58.580 47.826 0.00 0.00 0.00 4.00
3245 6535 3.772025 GGGATGATAGATACAGGACAGGG 59.228 52.174 0.00 0.00 0.00 4.45
3246 6536 3.196685 GGATGATAGATACAGGACAGGGC 59.803 52.174 0.00 0.00 0.00 5.19
3247 6537 3.328535 TGATAGATACAGGACAGGGCA 57.671 47.619 0.00 0.00 0.00 5.36
3248 6538 3.234353 TGATAGATACAGGACAGGGCAG 58.766 50.000 0.00 0.00 0.00 4.85
3249 6539 2.848678 TAGATACAGGACAGGGCAGT 57.151 50.000 0.00 0.00 0.00 4.40
3250 6540 1.198713 AGATACAGGACAGGGCAGTG 58.801 55.000 0.00 0.00 0.00 3.66
3251 6541 0.462759 GATACAGGACAGGGCAGTGC 60.463 60.000 6.55 6.55 0.00 4.40
3276 6566 2.433318 GGCACCAGCGTCTGAGAC 60.433 66.667 1.65 1.65 43.41 3.36
3277 6567 2.340078 GCACCAGCGTCTGAGACA 59.660 61.111 13.67 0.00 32.44 3.41
3278 6568 1.300931 GCACCAGCGTCTGAGACAA 60.301 57.895 13.67 0.00 32.44 3.18
3279 6569 0.880278 GCACCAGCGTCTGAGACAAA 60.880 55.000 13.67 0.00 32.44 2.83
3280 6570 1.143305 CACCAGCGTCTGAGACAAAG 58.857 55.000 13.67 0.96 32.44 2.77
3281 6571 1.040646 ACCAGCGTCTGAGACAAAGA 58.959 50.000 13.67 0.00 32.44 2.52
3282 6572 1.000283 ACCAGCGTCTGAGACAAAGAG 60.000 52.381 13.67 0.00 32.44 2.85
3283 6573 1.270826 CCAGCGTCTGAGACAAAGAGA 59.729 52.381 13.67 0.00 32.44 3.10
3284 6574 2.288457 CCAGCGTCTGAGACAAAGAGAA 60.288 50.000 13.67 0.00 32.44 2.87
3285 6575 2.985809 CAGCGTCTGAGACAAAGAGAAG 59.014 50.000 13.67 0.00 32.44 2.85
3286 6576 1.724082 GCGTCTGAGACAAAGAGAAGC 59.276 52.381 13.67 1.28 34.78 3.86
3287 6577 2.864097 GCGTCTGAGACAAAGAGAAGCA 60.864 50.000 13.67 0.00 39.92 3.91
3288 6578 2.985809 CGTCTGAGACAAAGAGAAGCAG 59.014 50.000 13.67 0.00 32.09 4.24
3289 6579 3.304996 CGTCTGAGACAAAGAGAAGCAGA 60.305 47.826 13.67 0.00 32.09 4.26
3290 6580 4.236935 GTCTGAGACAAAGAGAAGCAGAG 58.763 47.826 7.90 0.00 32.26 3.35
3291 6581 3.257873 TCTGAGACAAAGAGAAGCAGAGG 59.742 47.826 0.00 0.00 0.00 3.69
3292 6582 3.234353 TGAGACAAAGAGAAGCAGAGGA 58.766 45.455 0.00 0.00 0.00 3.71
3293 6583 3.643320 TGAGACAAAGAGAAGCAGAGGAA 59.357 43.478 0.00 0.00 0.00 3.36
3294 6584 4.244862 GAGACAAAGAGAAGCAGAGGAAG 58.755 47.826 0.00 0.00 0.00 3.46
3295 6585 2.741517 GACAAAGAGAAGCAGAGGAAGC 59.258 50.000 0.00 0.00 0.00 3.86
3296 6586 2.105477 ACAAAGAGAAGCAGAGGAAGCA 59.895 45.455 0.00 0.00 0.00 3.91
3297 6587 2.743126 CAAAGAGAAGCAGAGGAAGCAG 59.257 50.000 0.00 0.00 0.00 4.24
3298 6588 1.935799 AGAGAAGCAGAGGAAGCAGA 58.064 50.000 0.00 0.00 0.00 4.26
3299 6589 1.826720 AGAGAAGCAGAGGAAGCAGAG 59.173 52.381 0.00 0.00 0.00 3.35
3300 6590 0.249955 AGAAGCAGAGGAAGCAGAGC 59.750 55.000 0.00 0.00 0.00 4.09
3301 6591 0.036577 GAAGCAGAGGAAGCAGAGCA 60.037 55.000 0.00 0.00 0.00 4.26
3302 6592 0.399454 AAGCAGAGGAAGCAGAGCAA 59.601 50.000 0.00 0.00 0.00 3.91
3303 6593 0.399454 AGCAGAGGAAGCAGAGCAAA 59.601 50.000 0.00 0.00 0.00 3.68
3304 6594 0.803740 GCAGAGGAAGCAGAGCAAAG 59.196 55.000 0.00 0.00 0.00 2.77
3305 6595 1.881498 GCAGAGGAAGCAGAGCAAAGT 60.881 52.381 0.00 0.00 0.00 2.66
3306 6596 1.805345 CAGAGGAAGCAGAGCAAAGTG 59.195 52.381 0.00 0.00 0.00 3.16
3307 6597 1.419387 AGAGGAAGCAGAGCAAAGTGT 59.581 47.619 0.00 0.00 0.00 3.55
3308 6598 2.634940 AGAGGAAGCAGAGCAAAGTGTA 59.365 45.455 0.00 0.00 0.00 2.90
3309 6599 3.071602 AGAGGAAGCAGAGCAAAGTGTAA 59.928 43.478 0.00 0.00 0.00 2.41
3310 6600 3.142174 AGGAAGCAGAGCAAAGTGTAAC 58.858 45.455 0.00 0.00 0.00 2.50
3327 6617 5.905903 GTGTAACTGACGAAACTGAAGATG 58.094 41.667 0.00 0.00 0.00 2.90
3328 6618 5.462398 GTGTAACTGACGAAACTGAAGATGT 59.538 40.000 0.00 0.00 0.00 3.06
3329 6619 6.639686 GTGTAACTGACGAAACTGAAGATGTA 59.360 38.462 0.00 0.00 0.00 2.29
3330 6620 6.861572 TGTAACTGACGAAACTGAAGATGTAG 59.138 38.462 0.00 0.00 0.00 2.74
3331 6621 5.455056 ACTGACGAAACTGAAGATGTAGT 57.545 39.130 0.00 0.00 0.00 2.73
3332 6622 5.462405 ACTGACGAAACTGAAGATGTAGTC 58.538 41.667 0.00 0.00 0.00 2.59
3333 6623 5.009710 ACTGACGAAACTGAAGATGTAGTCA 59.990 40.000 0.00 0.00 35.26 3.41
3334 6624 6.025749 TGACGAAACTGAAGATGTAGTCAT 57.974 37.500 0.00 0.00 36.95 3.06
3347 6637 4.174411 TGTAGTCATCCAACAGAAGTCG 57.826 45.455 0.00 0.00 0.00 4.18
3348 6638 2.751166 AGTCATCCAACAGAAGTCGG 57.249 50.000 0.00 0.00 0.00 4.79
3349 6639 1.276421 AGTCATCCAACAGAAGTCGGG 59.724 52.381 0.00 0.00 0.00 5.14
3350 6640 1.275291 GTCATCCAACAGAAGTCGGGA 59.725 52.381 0.00 0.00 36.11 5.14
3351 6641 1.974957 TCATCCAACAGAAGTCGGGAA 59.025 47.619 0.00 0.00 35.53 3.97
3352 6642 2.370519 TCATCCAACAGAAGTCGGGAAA 59.629 45.455 0.00 0.00 35.53 3.13
3353 6643 2.543777 TCCAACAGAAGTCGGGAAAG 57.456 50.000 0.00 0.00 30.75 2.62
3354 6644 1.071699 TCCAACAGAAGTCGGGAAAGG 59.928 52.381 0.00 0.00 30.75 3.11
3355 6645 1.523758 CAACAGAAGTCGGGAAAGGG 58.476 55.000 0.00 0.00 0.00 3.95
3356 6646 1.071699 CAACAGAAGTCGGGAAAGGGA 59.928 52.381 0.00 0.00 0.00 4.20
3357 6647 0.685660 ACAGAAGTCGGGAAAGGGAC 59.314 55.000 0.00 0.00 0.00 4.46
3358 6648 0.977395 CAGAAGTCGGGAAAGGGACT 59.023 55.000 0.00 0.00 45.01 3.85
3359 6649 0.977395 AGAAGTCGGGAAAGGGACTG 59.023 55.000 0.00 0.00 42.42 3.51
3360 6650 0.036294 GAAGTCGGGAAAGGGACTGG 60.036 60.000 0.00 0.00 42.42 4.00
3361 6651 2.046217 GTCGGGAAAGGGACTGGC 60.046 66.667 0.00 0.00 40.86 4.85
3362 6652 3.702048 TCGGGAAAGGGACTGGCG 61.702 66.667 0.00 0.00 40.86 5.69
3365 6655 4.344865 GGAAAGGGACTGGCGCCA 62.345 66.667 30.59 30.59 40.86 5.69
3366 6656 2.044946 GAAAGGGACTGGCGCCAT 60.045 61.111 32.87 20.35 40.86 4.40
3367 6657 2.044946 AAAGGGACTGGCGCCATC 60.045 61.111 32.87 26.66 40.86 3.51
3368 6658 3.976701 AAAGGGACTGGCGCCATCG 62.977 63.158 32.87 22.45 40.86 3.84
3379 6669 4.504596 GCCATCGGTGCATCCCCA 62.505 66.667 0.00 0.00 0.00 4.96
3380 6670 2.516930 CCATCGGTGCATCCCCAC 60.517 66.667 0.00 0.00 35.00 4.61
3389 6679 4.415150 CATCCCCACCAGCGCAGT 62.415 66.667 11.47 3.05 0.00 4.40
3390 6680 2.687200 ATCCCCACCAGCGCAGTA 60.687 61.111 11.47 0.00 0.00 2.74
3391 6681 3.031417 ATCCCCACCAGCGCAGTAC 62.031 63.158 11.47 0.00 0.00 2.73
3392 6682 4.778143 CCCCACCAGCGCAGTACC 62.778 72.222 11.47 0.00 0.00 3.34
3393 6683 4.778143 CCCACCAGCGCAGTACCC 62.778 72.222 11.47 0.00 0.00 3.69
3394 6684 3.706373 CCACCAGCGCAGTACCCT 61.706 66.667 11.47 0.00 0.00 4.34
3395 6685 2.347490 CACCAGCGCAGTACCCTT 59.653 61.111 11.47 0.00 0.00 3.95
3396 6686 1.594833 CACCAGCGCAGTACCCTTA 59.405 57.895 11.47 0.00 0.00 2.69
3397 6687 0.178068 CACCAGCGCAGTACCCTTAT 59.822 55.000 11.47 0.00 0.00 1.73
3398 6688 0.464452 ACCAGCGCAGTACCCTTATC 59.536 55.000 11.47 0.00 0.00 1.75
3399 6689 0.464036 CCAGCGCAGTACCCTTATCA 59.536 55.000 11.47 0.00 0.00 2.15
3400 6690 1.571919 CAGCGCAGTACCCTTATCAC 58.428 55.000 11.47 0.00 0.00 3.06
3401 6691 0.464452 AGCGCAGTACCCTTATCACC 59.536 55.000 11.47 0.00 0.00 4.02
3402 6692 0.177141 GCGCAGTACCCTTATCACCA 59.823 55.000 0.30 0.00 0.00 4.17
3403 6693 1.806623 GCGCAGTACCCTTATCACCAG 60.807 57.143 0.30 0.00 0.00 4.00
3404 6694 1.806623 CGCAGTACCCTTATCACCAGC 60.807 57.143 0.00 0.00 0.00 4.85
3405 6695 1.475213 GCAGTACCCTTATCACCAGCC 60.475 57.143 0.00 0.00 0.00 4.85
3406 6696 1.141053 CAGTACCCTTATCACCAGCCC 59.859 57.143 0.00 0.00 0.00 5.19
3407 6697 0.106149 GTACCCTTATCACCAGCCCG 59.894 60.000 0.00 0.00 0.00 6.13
3408 6698 0.031917 TACCCTTATCACCAGCCCGA 60.032 55.000 0.00 0.00 0.00 5.14
3409 6699 1.338136 ACCCTTATCACCAGCCCGAG 61.338 60.000 0.00 0.00 0.00 4.63
3410 6700 1.227674 CCTTATCACCAGCCCGAGC 60.228 63.158 0.00 0.00 40.32 5.03
3411 6701 1.522092 CTTATCACCAGCCCGAGCA 59.478 57.895 0.00 0.00 43.56 4.26
3412 6702 0.107703 CTTATCACCAGCCCGAGCAA 60.108 55.000 0.00 0.00 43.56 3.91
3413 6703 0.392461 TTATCACCAGCCCGAGCAAC 60.392 55.000 0.00 0.00 43.56 4.17
3414 6704 1.549243 TATCACCAGCCCGAGCAACA 61.549 55.000 0.00 0.00 43.56 3.33
3415 6705 2.202236 ATCACCAGCCCGAGCAACAT 62.202 55.000 0.00 0.00 43.56 2.71
3416 6706 1.973281 CACCAGCCCGAGCAACATT 60.973 57.895 0.00 0.00 43.56 2.71
3417 6707 1.228552 ACCAGCCCGAGCAACATTT 60.229 52.632 0.00 0.00 43.56 2.32
3418 6708 0.037590 ACCAGCCCGAGCAACATTTA 59.962 50.000 0.00 0.00 43.56 1.40
3419 6709 0.734889 CCAGCCCGAGCAACATTTAG 59.265 55.000 0.00 0.00 43.56 1.85
3420 6710 0.099436 CAGCCCGAGCAACATTTAGC 59.901 55.000 0.00 0.00 43.56 3.09
3421 6711 0.035056 AGCCCGAGCAACATTTAGCT 60.035 50.000 0.00 0.00 45.25 3.32
3422 6712 0.811281 GCCCGAGCAACATTTAGCTT 59.189 50.000 0.00 0.00 42.04 3.74
3423 6713 1.202188 GCCCGAGCAACATTTAGCTTC 60.202 52.381 0.00 0.00 42.04 3.86
3424 6714 2.083774 CCCGAGCAACATTTAGCTTCA 58.916 47.619 0.00 0.00 42.04 3.02
3425 6715 2.684881 CCCGAGCAACATTTAGCTTCAT 59.315 45.455 0.00 0.00 42.04 2.57
3426 6716 3.242870 CCCGAGCAACATTTAGCTTCATC 60.243 47.826 0.00 0.00 42.04 2.92
3427 6717 3.624861 CCGAGCAACATTTAGCTTCATCT 59.375 43.478 0.00 0.00 42.04 2.90
3428 6718 4.260538 CCGAGCAACATTTAGCTTCATCTC 60.261 45.833 0.00 0.00 42.04 2.75
3429 6719 4.260538 CGAGCAACATTTAGCTTCATCTCC 60.261 45.833 0.00 0.00 42.04 3.71
3430 6720 4.592942 AGCAACATTTAGCTTCATCTCCA 58.407 39.130 0.00 0.00 38.01 3.86
3431 6721 5.012239 AGCAACATTTAGCTTCATCTCCAA 58.988 37.500 0.00 0.00 38.01 3.53
3432 6722 5.125097 AGCAACATTTAGCTTCATCTCCAAG 59.875 40.000 0.00 0.00 38.01 3.61
3433 6723 5.338365 CAACATTTAGCTTCATCTCCAAGC 58.662 41.667 0.00 0.00 45.71 4.01
3437 6727 2.105124 GCTTCATCTCCAAGCTGGC 58.895 57.895 0.00 0.00 42.63 4.85
3438 6728 0.679002 GCTTCATCTCCAAGCTGGCA 60.679 55.000 0.00 0.00 42.63 4.92
3439 6729 2.022754 GCTTCATCTCCAAGCTGGCAT 61.023 52.381 0.00 0.00 42.63 4.40
3440 6730 2.747467 GCTTCATCTCCAAGCTGGCATA 60.747 50.000 0.00 0.00 42.63 3.14
3441 6731 3.548770 CTTCATCTCCAAGCTGGCATAA 58.451 45.455 0.00 0.00 37.47 1.90
3442 6732 2.923121 TCATCTCCAAGCTGGCATAAC 58.077 47.619 0.00 0.00 37.47 1.89
3443 6733 2.507058 TCATCTCCAAGCTGGCATAACT 59.493 45.455 0.00 0.00 37.47 2.24
3444 6734 2.698855 TCTCCAAGCTGGCATAACTC 57.301 50.000 0.00 0.00 37.47 3.01
3445 6735 1.908619 TCTCCAAGCTGGCATAACTCA 59.091 47.619 0.00 0.00 37.47 3.41
3446 6736 2.012673 CTCCAAGCTGGCATAACTCAC 58.987 52.381 0.00 0.00 37.47 3.51
3447 6737 1.350684 TCCAAGCTGGCATAACTCACA 59.649 47.619 0.00 0.00 37.47 3.58
3448 6738 1.741706 CCAAGCTGGCATAACTCACAG 59.258 52.381 0.00 0.00 0.00 3.66
3449 6739 1.741706 CAAGCTGGCATAACTCACAGG 59.258 52.381 0.00 0.00 0.00 4.00
3450 6740 0.987294 AGCTGGCATAACTCACAGGT 59.013 50.000 0.00 0.00 36.91 4.00
3451 6741 2.187958 AGCTGGCATAACTCACAGGTA 58.812 47.619 0.00 0.00 39.60 3.08
3452 6742 2.571653 AGCTGGCATAACTCACAGGTAA 59.428 45.455 0.00 0.00 39.60 2.85
3453 6743 2.939103 GCTGGCATAACTCACAGGTAAG 59.061 50.000 0.00 0.00 0.00 2.34
3454 6744 3.535561 CTGGCATAACTCACAGGTAAGG 58.464 50.000 0.00 0.00 0.00 2.69
3455 6745 2.910319 TGGCATAACTCACAGGTAAGGT 59.090 45.455 0.00 0.00 0.00 3.50
3456 6746 4.098155 TGGCATAACTCACAGGTAAGGTA 58.902 43.478 0.00 0.00 0.00 3.08
3457 6747 4.081309 TGGCATAACTCACAGGTAAGGTAC 60.081 45.833 0.00 0.00 0.00 3.34
3458 6748 4.081309 GGCATAACTCACAGGTAAGGTACA 60.081 45.833 0.00 0.00 0.00 2.90
3459 6749 5.396436 GGCATAACTCACAGGTAAGGTACAT 60.396 44.000 0.00 0.00 0.00 2.29
3460 6750 6.183360 GGCATAACTCACAGGTAAGGTACATA 60.183 42.308 0.00 0.00 0.00 2.29
3461 6751 6.700520 GCATAACTCACAGGTAAGGTACATAC 59.299 42.308 0.00 0.00 0.00 2.39
3462 6752 7.632028 GCATAACTCACAGGTAAGGTACATACA 60.632 40.741 9.46 0.00 33.75 2.29
3463 6753 6.869206 AACTCACAGGTAAGGTACATACAT 57.131 37.500 9.46 1.04 33.75 2.29
3465 6755 5.018539 TCACAGGTAAGGTACATACATGC 57.981 43.478 17.40 0.84 46.15 4.06
3466 6756 4.468153 TCACAGGTAAGGTACATACATGCA 59.532 41.667 17.40 0.00 46.15 3.96
3467 6757 4.570772 CACAGGTAAGGTACATACATGCAC 59.429 45.833 17.40 0.00 46.15 4.57
3468 6758 4.224147 ACAGGTAAGGTACATACATGCACA 59.776 41.667 17.40 0.00 46.15 4.57
3469 6759 5.104527 ACAGGTAAGGTACATACATGCACAT 60.105 40.000 17.40 2.02 46.15 3.21
3470 6760 5.822519 CAGGTAAGGTACATACATGCACATT 59.177 40.000 8.98 0.00 37.48 2.71
3471 6761 6.017934 CAGGTAAGGTACATACATGCACATTC 60.018 42.308 8.98 0.00 37.48 2.67
3472 6762 5.238650 GGTAAGGTACATACATGCACATTCC 59.761 44.000 9.46 0.00 33.75 3.01
3473 6763 4.502105 AGGTACATACATGCACATTCCA 57.498 40.909 0.00 0.00 0.00 3.53
3474 6764 4.454678 AGGTACATACATGCACATTCCAG 58.545 43.478 0.00 0.00 0.00 3.86
3475 6765 3.565482 GGTACATACATGCACATTCCAGG 59.435 47.826 0.00 0.00 0.00 4.45
3476 6766 3.650281 ACATACATGCACATTCCAGGA 57.350 42.857 0.00 0.00 0.00 3.86
3477 6767 3.548770 ACATACATGCACATTCCAGGAG 58.451 45.455 0.00 0.00 0.00 3.69
3478 6768 3.200605 ACATACATGCACATTCCAGGAGA 59.799 43.478 0.00 0.00 0.00 3.71
3479 6769 2.119801 ACATGCACATTCCAGGAGAC 57.880 50.000 0.00 0.00 0.00 3.36
3480 6770 1.352017 ACATGCACATTCCAGGAGACA 59.648 47.619 0.00 0.00 0.00 3.41
3481 6771 2.224843 ACATGCACATTCCAGGAGACAA 60.225 45.455 0.00 0.00 0.00 3.18
3482 6772 2.655090 TGCACATTCCAGGAGACAAA 57.345 45.000 0.00 0.00 0.00 2.83
3483 6773 3.159213 TGCACATTCCAGGAGACAAAT 57.841 42.857 0.00 0.00 0.00 2.32
3484 6774 2.821378 TGCACATTCCAGGAGACAAATG 59.179 45.455 0.00 0.00 34.85 2.32
3485 6775 2.416431 GCACATTCCAGGAGACAAATGC 60.416 50.000 0.00 0.00 33.11 3.56
3486 6776 2.821378 CACATTCCAGGAGACAAATGCA 59.179 45.455 0.00 0.00 33.11 3.96
3487 6777 2.821969 ACATTCCAGGAGACAAATGCAC 59.178 45.455 0.00 0.00 33.11 4.57
3488 6778 2.957402 TTCCAGGAGACAAATGCACT 57.043 45.000 0.00 0.00 0.00 4.40
3489 6779 4.263462 ACATTCCAGGAGACAAATGCACTA 60.263 41.667 0.00 0.00 33.11 2.74
3490 6780 4.574674 TTCCAGGAGACAAATGCACTAT 57.425 40.909 0.00 0.00 0.00 2.12
3491 6781 4.574674 TCCAGGAGACAAATGCACTATT 57.425 40.909 0.00 0.00 0.00 1.73
3492 6782 4.264253 TCCAGGAGACAAATGCACTATTG 58.736 43.478 7.06 7.06 0.00 1.90
3493 6783 4.012374 CCAGGAGACAAATGCACTATTGT 58.988 43.478 12.61 12.61 42.18 2.71
3516 6806 8.829514 TGTCAAATACAAACACGTTTTAAGAG 57.170 30.769 0.00 0.00 34.29 2.85
3517 6807 8.666573 TGTCAAATACAAACACGTTTTAAGAGA 58.333 29.630 0.00 0.00 34.29 3.10
3518 6808 9.659830 GTCAAATACAAACACGTTTTAAGAGAT 57.340 29.630 0.00 0.00 0.00 2.75
3519 6809 9.658475 TCAAATACAAACACGTTTTAAGAGATG 57.342 29.630 0.00 0.00 0.00 2.90
3520 6810 9.658475 CAAATACAAACACGTTTTAAGAGATGA 57.342 29.630 0.00 0.00 0.00 2.92
3522 6812 9.659830 AATACAAACACGTTTTAAGAGATGAAC 57.340 29.630 0.00 0.00 0.00 3.18
3523 6813 7.079182 ACAAACACGTTTTAAGAGATGAACA 57.921 32.000 0.00 0.00 0.00 3.18
3524 6814 7.531716 ACAAACACGTTTTAAGAGATGAACAA 58.468 30.769 0.00 0.00 0.00 2.83
3525 6815 7.483691 ACAAACACGTTTTAAGAGATGAACAAC 59.516 33.333 0.00 0.00 0.00 3.32
3526 6816 6.671614 ACACGTTTTAAGAGATGAACAACA 57.328 33.333 0.00 0.00 0.00 3.33
3527 6817 7.079182 ACACGTTTTAAGAGATGAACAACAA 57.921 32.000 0.00 0.00 0.00 2.83
3528 6818 7.703328 ACACGTTTTAAGAGATGAACAACAAT 58.297 30.769 0.00 0.00 0.00 2.71
3529 6819 8.188139 ACACGTTTTAAGAGATGAACAACAATT 58.812 29.630 0.00 0.00 0.00 2.32
3530 6820 9.658475 CACGTTTTAAGAGATGAACAACAATTA 57.342 29.630 0.00 0.00 0.00 1.40
3538 6828 8.273780 AGAGATGAACAACAATTATTGAGTCC 57.726 34.615 12.28 0.00 33.57 3.85
3539 6829 7.884877 AGAGATGAACAACAATTATTGAGTCCA 59.115 33.333 12.28 4.52 33.57 4.02
3540 6830 8.408043 AGATGAACAACAATTATTGAGTCCAA 57.592 30.769 12.28 0.93 36.61 3.53
3541 6831 8.859090 AGATGAACAACAATTATTGAGTCCAAA 58.141 29.630 12.28 0.00 35.67 3.28
3542 6832 9.643693 GATGAACAACAATTATTGAGTCCAAAT 57.356 29.630 12.28 3.01 35.67 2.32
3543 6833 8.815141 TGAACAACAATTATTGAGTCCAAATG 57.185 30.769 12.28 0.98 35.67 2.32
3544 6834 8.637099 TGAACAACAATTATTGAGTCCAAATGA 58.363 29.630 12.28 0.00 35.67 2.57
3545 6835 9.474920 GAACAACAATTATTGAGTCCAAATGAA 57.525 29.630 12.28 0.00 35.67 2.57
3553 6843 6.690194 ATTGAGTCCAAATGAATAGTCTGC 57.310 37.500 0.00 0.00 35.67 4.26
3554 6844 5.164620 TGAGTCCAAATGAATAGTCTGCA 57.835 39.130 0.00 0.00 0.00 4.41
3555 6845 5.559770 TGAGTCCAAATGAATAGTCTGCAA 58.440 37.500 0.00 0.00 0.00 4.08
3556 6846 6.003326 TGAGTCCAAATGAATAGTCTGCAAA 58.997 36.000 0.00 0.00 0.00 3.68
3557 6847 6.660521 TGAGTCCAAATGAATAGTCTGCAAAT 59.339 34.615 0.00 0.00 0.00 2.32
3558 6848 6.860080 AGTCCAAATGAATAGTCTGCAAATG 58.140 36.000 0.00 0.00 0.00 2.32
3559 6849 6.038356 GTCCAAATGAATAGTCTGCAAATGG 58.962 40.000 0.00 0.00 0.00 3.16
3560 6850 5.716228 TCCAAATGAATAGTCTGCAAATGGT 59.284 36.000 0.00 0.00 0.00 3.55
3561 6851 6.211184 TCCAAATGAATAGTCTGCAAATGGTT 59.789 34.615 0.00 0.00 0.00 3.67
3562 6852 6.311935 CCAAATGAATAGTCTGCAAATGGTTG 59.688 38.462 0.00 0.00 37.83 3.77
3563 6853 5.587388 ATGAATAGTCTGCAAATGGTTGG 57.413 39.130 0.00 0.00 35.10 3.77
3564 6854 3.763360 TGAATAGTCTGCAAATGGTTGGG 59.237 43.478 0.00 0.00 35.10 4.12
3565 6855 3.737559 ATAGTCTGCAAATGGTTGGGA 57.262 42.857 0.00 0.00 35.10 4.37
3566 6856 2.380064 AGTCTGCAAATGGTTGGGAA 57.620 45.000 0.00 0.00 35.10 3.97
3567 6857 2.893424 AGTCTGCAAATGGTTGGGAAT 58.107 42.857 0.00 0.00 35.10 3.01
3568 6858 3.242011 AGTCTGCAAATGGTTGGGAATT 58.758 40.909 0.00 0.00 35.10 2.17
3569 6859 4.415596 AGTCTGCAAATGGTTGGGAATTA 58.584 39.130 0.00 0.00 35.10 1.40
3570 6860 4.837860 AGTCTGCAAATGGTTGGGAATTAA 59.162 37.500 0.00 0.00 35.10 1.40
3571 6861 5.047092 AGTCTGCAAATGGTTGGGAATTAAG 60.047 40.000 0.00 0.00 35.10 1.85
3572 6862 4.222588 TCTGCAAATGGTTGGGAATTAAGG 59.777 41.667 0.00 0.00 35.10 2.69
3573 6863 4.163427 TGCAAATGGTTGGGAATTAAGGA 58.837 39.130 0.00 0.00 35.10 3.36
3574 6864 4.222588 TGCAAATGGTTGGGAATTAAGGAG 59.777 41.667 0.00 0.00 35.10 3.69
3575 6865 4.383010 GCAAATGGTTGGGAATTAAGGAGG 60.383 45.833 0.00 0.00 35.10 4.30
3576 6866 4.692523 AATGGTTGGGAATTAAGGAGGT 57.307 40.909 0.00 0.00 0.00 3.85
3577 6867 4.692523 ATGGTTGGGAATTAAGGAGGTT 57.307 40.909 0.00 0.00 0.00 3.50
3578 6868 4.479156 TGGTTGGGAATTAAGGAGGTTT 57.521 40.909 0.00 0.00 0.00 3.27
3579 6869 4.156477 TGGTTGGGAATTAAGGAGGTTTG 58.844 43.478 0.00 0.00 0.00 2.93
3580 6870 3.056107 GGTTGGGAATTAAGGAGGTTTGC 60.056 47.826 0.00 0.00 0.00 3.68
3581 6871 3.534357 TGGGAATTAAGGAGGTTTGCA 57.466 42.857 0.00 0.00 0.00 4.08
3582 6872 3.850752 TGGGAATTAAGGAGGTTTGCAA 58.149 40.909 0.00 0.00 0.00 4.08
3583 6873 4.424842 TGGGAATTAAGGAGGTTTGCAAT 58.575 39.130 0.00 0.00 0.00 3.56
3584 6874 4.843516 TGGGAATTAAGGAGGTTTGCAATT 59.156 37.500 0.00 0.00 0.00 2.32
3585 6875 6.019748 TGGGAATTAAGGAGGTTTGCAATTA 58.980 36.000 0.00 0.00 0.00 1.40
3586 6876 6.071051 TGGGAATTAAGGAGGTTTGCAATTAC 60.071 38.462 0.00 0.00 0.00 1.89
3587 6877 6.071051 GGGAATTAAGGAGGTTTGCAATTACA 60.071 38.462 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 130 6.437162 TCACTTTCAATGGCTTAGGCTATTTT 59.563 34.615 5.65 0.00 45.18 1.82
161 166 5.538433 ACTTGGGCATTTGAGCTAACTTAAA 59.462 36.000 0.00 0.00 36.02 1.52
236 241 2.593026 TCCACTTGGATGGAAACCAAC 58.407 47.619 0.00 0.00 44.47 3.77
262 267 6.096846 AGCCTGTTCAATTATCCCATTGTTAC 59.903 38.462 0.00 0.00 35.86 2.50
354 824 2.179427 AGGGCCAAATTAGAAACAGGC 58.821 47.619 6.18 0.00 41.29 4.85
384 854 3.551454 GCAAAAGTGAAATGCTCAGCTGA 60.551 43.478 17.19 17.19 37.12 4.26
496 974 0.814010 ACGCCACAAGAACAGGACAC 60.814 55.000 0.00 0.00 0.00 3.67
500 978 2.699954 AGATAACGCCACAAGAACAGG 58.300 47.619 0.00 0.00 0.00 4.00
513 991 8.635877 ACAATAAGAGCTTTCTGTAGATAACG 57.364 34.615 0.00 0.00 0.00 3.18
536 1014 5.335113 GCTGCAGAGATGAACAAACATAACA 60.335 40.000 20.43 0.00 0.00 2.41
544 1022 2.156917 CAAGGCTGCAGAGATGAACAA 58.843 47.619 20.43 0.00 0.00 2.83
595 1073 7.000472 ACAAAATTGAGATCTCCAACTTGAGA 59.000 34.615 20.03 0.00 45.01 3.27
688 1171 1.071699 TGCCTGTAAACACCTGGAGAC 59.928 52.381 0.00 0.00 0.00 3.36
693 1176 0.865769 GTCGTGCCTGTAAACACCTG 59.134 55.000 0.00 0.00 33.09 4.00
703 1186 4.223320 ACAAAATAAACAGTCGTGCCTG 57.777 40.909 0.00 0.00 38.45 4.85
718 1201 8.573885 CATGATGCTCATATAGACCAACAAAAT 58.426 33.333 0.00 0.00 34.28 1.82
730 1213 6.527423 TCAGAAGTTGCATGATGCTCATATA 58.473 36.000 19.19 0.00 45.31 0.86
775 1258 5.221422 CCCTAGACTCAAGATAGGCAGAAAG 60.221 48.000 0.00 0.00 35.68 2.62
779 1262 3.838565 TCCCTAGACTCAAGATAGGCAG 58.161 50.000 0.00 0.00 35.68 4.85
780 1263 3.973472 TCCCTAGACTCAAGATAGGCA 57.027 47.619 0.00 0.00 35.68 4.75
821 2925 6.470557 AATGCTTCCATCAAAATTTTCACG 57.529 33.333 0.00 0.00 0.00 4.35
832 2936 6.778834 ACATGACAATAAATGCTTCCATCA 57.221 33.333 0.00 0.00 0.00 3.07
835 2939 7.537715 CAACTACATGACAATAAATGCTTCCA 58.462 34.615 0.00 0.00 0.00 3.53
961 3066 1.760613 CTTCCGGTAGCACCTGGATAA 59.239 52.381 0.00 5.70 39.45 1.75
988 3100 0.704076 TTGCCCATACTGAAGGCCTT 59.296 50.000 20.65 20.65 46.55 4.35
990 3102 1.133668 AGATTGCCCATACTGAAGGCC 60.134 52.381 0.00 0.00 46.55 5.19
995 3107 2.042686 GCACAGATTGCCCATACTGA 57.957 50.000 0.00 0.00 46.63 3.41
1146 3258 1.378250 ATCCAGCTGCTGCAACCTC 60.378 57.895 23.86 0.00 42.74 3.85
1170 3282 7.085052 AGAAACCTTTGTCTTAGTTTCACAC 57.915 36.000 14.71 0.00 46.67 3.82
1395 3513 2.799126 ATATTCAACTTCCGGTGCCA 57.201 45.000 0.00 0.00 0.00 4.92
1434 4224 8.422577 AAAATTTAGAAGTTGCAGGGAGTAAT 57.577 30.769 0.00 0.00 0.00 1.89
1560 4819 7.792032 TGACCTTGGATACTTAATTAGGTCAG 58.208 38.462 15.04 0.00 45.41 3.51
1640 4901 3.313526 AGAACTTCACATGTCAGCAACAC 59.686 43.478 0.00 0.00 41.75 3.32
1732 4993 6.056236 TGTGTTGGTTAGTTTGTAGTATGCA 58.944 36.000 0.00 0.00 0.00 3.96
1747 5008 3.814504 ATCTGGGATCTTGTGTTGGTT 57.185 42.857 0.00 0.00 0.00 3.67
1839 5101 9.597170 GCTGTATCAGTGATGATATGAATGTAT 57.403 33.333 16.15 0.00 33.87 2.29
2004 5269 1.067295 AAGTTCATCCTCCACAGCCA 58.933 50.000 0.00 0.00 0.00 4.75
2527 5792 1.519234 GATCTGCGTGGCGATGTCA 60.519 57.895 0.00 0.00 0.00 3.58
2716 5983 0.739462 CGCACATCGACCTAAGCCAA 60.739 55.000 0.00 0.00 41.67 4.52
2770 6047 8.011673 CCAGCATTTCATAACACACTTATATCG 58.988 37.037 0.00 0.00 0.00 2.92
2845 6132 6.909550 ACCTTAAACCAGCATTTTACATGA 57.090 33.333 0.00 0.00 0.00 3.07
2886 6173 4.946157 GGAAAGGCATCTCAGAAGAAATCA 59.054 41.667 0.00 0.00 34.49 2.57
2916 6203 2.820728 TCATCCTTACACTCCCTCGA 57.179 50.000 0.00 0.00 0.00 4.04
2961 6248 2.072298 GACACTCCATCTTCACACTGC 58.928 52.381 0.00 0.00 0.00 4.40
2975 6262 1.139947 GCTACAGCTCCCGACACTC 59.860 63.158 0.00 0.00 38.21 3.51
2981 6268 1.546029 TGCTATATGCTACAGCTCCCG 59.454 52.381 2.44 0.00 43.37 5.14
2987 6274 9.813446 TCATCATTATCTTGCTATATGCTACAG 57.187 33.333 0.00 0.00 43.37 2.74
3004 6291 9.836864 TGCTACATGTTTCTAGTTCATCATTAT 57.163 29.630 2.30 0.00 0.00 1.28
3007 6294 7.228108 CCATGCTACATGTTTCTAGTTCATCAT 59.772 37.037 2.30 0.00 0.00 2.45
3008 6295 6.539826 CCATGCTACATGTTTCTAGTTCATCA 59.460 38.462 2.30 0.00 0.00 3.07
3017 6304 8.121305 TGAAATTTACCATGCTACATGTTTCT 57.879 30.769 2.30 0.00 0.00 2.52
3104 6394 1.361668 CCTTCCGCAACATGGACTCG 61.362 60.000 0.00 0.00 34.56 4.18
3135 6425 3.599792 CTTCCGCAGCTGCAAACCG 62.600 63.158 36.03 20.19 42.21 4.44
3144 6434 2.946762 GTGTTGTCCTTCCGCAGC 59.053 61.111 0.00 0.00 0.00 5.25
3163 6453 2.949451 ACATGGACTCGAAGCTACAG 57.051 50.000 0.00 0.00 0.00 2.74
3190 6480 1.542547 GGTTGACATCTGGGTGTTCGT 60.543 52.381 0.00 0.00 31.16 3.85
3191 6481 1.156736 GGTTGACATCTGGGTGTTCG 58.843 55.000 0.00 0.00 31.16 3.95
3200 6490 1.230635 GCACGCACAGGTTGACATCT 61.231 55.000 0.00 0.00 0.00 2.90
3229 6519 2.968574 CACTGCCCTGTCCTGTATCTAT 59.031 50.000 0.00 0.00 0.00 1.98
3230 6520 2.388735 CACTGCCCTGTCCTGTATCTA 58.611 52.381 0.00 0.00 0.00 1.98
3231 6521 1.198713 CACTGCCCTGTCCTGTATCT 58.801 55.000 0.00 0.00 0.00 1.98
3232 6522 0.462759 GCACTGCCCTGTCCTGTATC 60.463 60.000 0.00 0.00 0.00 2.24
3233 6523 1.604378 GCACTGCCCTGTCCTGTAT 59.396 57.895 0.00 0.00 0.00 2.29
3234 6524 2.592993 GGCACTGCCCTGTCCTGTA 61.593 63.158 9.13 0.00 44.06 2.74
3235 6525 3.958860 GGCACTGCCCTGTCCTGT 61.959 66.667 9.13 0.00 44.06 4.00
3253 6543 4.120331 GACGCTGGTGCCCATTGC 62.120 66.667 0.00 0.00 41.77 3.56
3254 6544 2.360350 AGACGCTGGTGCCCATTG 60.360 61.111 0.00 0.00 35.36 2.82
3255 6545 2.360350 CAGACGCTGGTGCCCATT 60.360 61.111 0.00 0.00 35.36 3.16
3256 6546 3.320879 CTCAGACGCTGGTGCCCAT 62.321 63.158 6.95 0.00 35.36 4.00
3257 6547 4.007644 CTCAGACGCTGGTGCCCA 62.008 66.667 6.95 0.00 35.36 5.36
3258 6548 3.695606 TCTCAGACGCTGGTGCCC 61.696 66.667 6.95 0.00 35.36 5.36
3259 6549 2.433318 GTCTCAGACGCTGGTGCC 60.433 66.667 6.95 0.00 35.36 5.01
3260 6550 0.880278 TTTGTCTCAGACGCTGGTGC 60.880 55.000 0.00 0.00 34.95 5.01
3261 6551 1.143305 CTTTGTCTCAGACGCTGGTG 58.857 55.000 0.00 2.18 34.95 4.17
3262 6552 1.000283 CTCTTTGTCTCAGACGCTGGT 60.000 52.381 0.00 0.00 34.95 4.00
3263 6553 1.270826 TCTCTTTGTCTCAGACGCTGG 59.729 52.381 0.00 0.00 34.95 4.85
3264 6554 2.713895 TCTCTTTGTCTCAGACGCTG 57.286 50.000 0.00 1.02 34.95 5.18
3265 6555 2.609244 GCTTCTCTTTGTCTCAGACGCT 60.609 50.000 0.00 0.00 34.95 5.07
3266 6556 1.724082 GCTTCTCTTTGTCTCAGACGC 59.276 52.381 0.00 0.00 34.95 5.19
3267 6557 2.985809 CTGCTTCTCTTTGTCTCAGACG 59.014 50.000 0.00 0.00 34.95 4.18
3268 6558 4.236935 CTCTGCTTCTCTTTGTCTCAGAC 58.763 47.826 0.00 0.00 0.00 3.51
3269 6559 3.257873 CCTCTGCTTCTCTTTGTCTCAGA 59.742 47.826 0.00 0.00 0.00 3.27
3270 6560 3.257873 TCCTCTGCTTCTCTTTGTCTCAG 59.742 47.826 0.00 0.00 0.00 3.35
3271 6561 3.234353 TCCTCTGCTTCTCTTTGTCTCA 58.766 45.455 0.00 0.00 0.00 3.27
3272 6562 3.951775 TCCTCTGCTTCTCTTTGTCTC 57.048 47.619 0.00 0.00 0.00 3.36
3273 6563 3.556843 GCTTCCTCTGCTTCTCTTTGTCT 60.557 47.826 0.00 0.00 0.00 3.41
3274 6564 2.741517 GCTTCCTCTGCTTCTCTTTGTC 59.258 50.000 0.00 0.00 0.00 3.18
3275 6565 2.105477 TGCTTCCTCTGCTTCTCTTTGT 59.895 45.455 0.00 0.00 0.00 2.83
3276 6566 2.743126 CTGCTTCCTCTGCTTCTCTTTG 59.257 50.000 0.00 0.00 0.00 2.77
3277 6567 2.636893 TCTGCTTCCTCTGCTTCTCTTT 59.363 45.455 0.00 0.00 0.00 2.52
3278 6568 2.234414 CTCTGCTTCCTCTGCTTCTCTT 59.766 50.000 0.00 0.00 0.00 2.85
3279 6569 1.826720 CTCTGCTTCCTCTGCTTCTCT 59.173 52.381 0.00 0.00 0.00 3.10
3280 6570 1.740043 GCTCTGCTTCCTCTGCTTCTC 60.740 57.143 0.00 0.00 0.00 2.87
3281 6571 0.249955 GCTCTGCTTCCTCTGCTTCT 59.750 55.000 0.00 0.00 0.00 2.85
3282 6572 0.036577 TGCTCTGCTTCCTCTGCTTC 60.037 55.000 0.00 0.00 0.00 3.86
3283 6573 0.399454 TTGCTCTGCTTCCTCTGCTT 59.601 50.000 0.00 0.00 0.00 3.91
3284 6574 0.399454 TTTGCTCTGCTTCCTCTGCT 59.601 50.000 0.00 0.00 0.00 4.24
3285 6575 0.803740 CTTTGCTCTGCTTCCTCTGC 59.196 55.000 0.00 0.00 0.00 4.26
3286 6576 1.805345 CACTTTGCTCTGCTTCCTCTG 59.195 52.381 0.00 0.00 0.00 3.35
3287 6577 1.419387 ACACTTTGCTCTGCTTCCTCT 59.581 47.619 0.00 0.00 0.00 3.69
3288 6578 1.889545 ACACTTTGCTCTGCTTCCTC 58.110 50.000 0.00 0.00 0.00 3.71
3289 6579 3.142174 GTTACACTTTGCTCTGCTTCCT 58.858 45.455 0.00 0.00 0.00 3.36
3290 6580 3.058639 CAGTTACACTTTGCTCTGCTTCC 60.059 47.826 0.00 0.00 0.00 3.46
3291 6581 3.809832 TCAGTTACACTTTGCTCTGCTTC 59.190 43.478 0.00 0.00 0.00 3.86
3292 6582 3.561725 GTCAGTTACACTTTGCTCTGCTT 59.438 43.478 0.00 0.00 0.00 3.91
3293 6583 3.134458 GTCAGTTACACTTTGCTCTGCT 58.866 45.455 0.00 0.00 0.00 4.24
3294 6584 2.096713 CGTCAGTTACACTTTGCTCTGC 60.097 50.000 0.00 0.00 0.00 4.26
3295 6585 3.381045 TCGTCAGTTACACTTTGCTCTG 58.619 45.455 0.00 0.00 0.00 3.35
3296 6586 3.728076 TCGTCAGTTACACTTTGCTCT 57.272 42.857 0.00 0.00 0.00 4.09
3297 6587 4.270325 AGTTTCGTCAGTTACACTTTGCTC 59.730 41.667 0.00 0.00 0.00 4.26
3298 6588 4.034048 CAGTTTCGTCAGTTACACTTTGCT 59.966 41.667 0.00 0.00 0.00 3.91
3299 6589 4.033587 TCAGTTTCGTCAGTTACACTTTGC 59.966 41.667 0.00 0.00 0.00 3.68
3300 6590 5.712217 TCAGTTTCGTCAGTTACACTTTG 57.288 39.130 0.00 0.00 0.00 2.77
3301 6591 6.103997 TCTTCAGTTTCGTCAGTTACACTTT 58.896 36.000 0.00 0.00 0.00 2.66
3302 6592 5.657474 TCTTCAGTTTCGTCAGTTACACTT 58.343 37.500 0.00 0.00 0.00 3.16
3303 6593 5.258456 TCTTCAGTTTCGTCAGTTACACT 57.742 39.130 0.00 0.00 0.00 3.55
3304 6594 5.462398 ACATCTTCAGTTTCGTCAGTTACAC 59.538 40.000 0.00 0.00 0.00 2.90
3305 6595 5.597806 ACATCTTCAGTTTCGTCAGTTACA 58.402 37.500 0.00 0.00 0.00 2.41
3306 6596 6.862090 ACTACATCTTCAGTTTCGTCAGTTAC 59.138 38.462 0.00 0.00 0.00 2.50
3307 6597 6.978338 ACTACATCTTCAGTTTCGTCAGTTA 58.022 36.000 0.00 0.00 0.00 2.24
3308 6598 5.844004 ACTACATCTTCAGTTTCGTCAGTT 58.156 37.500 0.00 0.00 0.00 3.16
3309 6599 5.009710 TGACTACATCTTCAGTTTCGTCAGT 59.990 40.000 0.00 0.00 0.00 3.41
3310 6600 5.461526 TGACTACATCTTCAGTTTCGTCAG 58.538 41.667 0.00 0.00 0.00 3.51
3311 6601 5.447624 TGACTACATCTTCAGTTTCGTCA 57.552 39.130 0.00 0.00 0.00 4.35
3312 6602 6.561945 GATGACTACATCTTCAGTTTCGTC 57.438 41.667 0.00 0.00 46.47 4.20
3325 6615 4.748892 CGACTTCTGTTGGATGACTACAT 58.251 43.478 0.00 0.00 39.67 2.29
3326 6616 4.174411 CGACTTCTGTTGGATGACTACA 57.826 45.455 0.00 0.00 0.00 2.74
3335 6625 1.523758 CCTTTCCCGACTTCTGTTGG 58.476 55.000 0.00 0.00 45.35 3.77
3336 6626 1.071699 TCCCTTTCCCGACTTCTGTTG 59.928 52.381 0.00 0.00 0.00 3.33
3337 6627 1.071857 GTCCCTTTCCCGACTTCTGTT 59.928 52.381 0.00 0.00 0.00 3.16
3338 6628 0.685660 GTCCCTTTCCCGACTTCTGT 59.314 55.000 0.00 0.00 0.00 3.41
3339 6629 0.977395 AGTCCCTTTCCCGACTTCTG 59.023 55.000 0.00 0.00 35.84 3.02
3340 6630 0.977395 CAGTCCCTTTCCCGACTTCT 59.023 55.000 0.00 0.00 37.23 2.85
3341 6631 0.036294 CCAGTCCCTTTCCCGACTTC 60.036 60.000 0.00 0.00 37.23 3.01
3342 6632 2.067197 CCAGTCCCTTTCCCGACTT 58.933 57.895 0.00 0.00 37.23 3.01
3343 6633 2.593956 GCCAGTCCCTTTCCCGACT 61.594 63.158 0.00 0.00 39.96 4.18
3344 6634 2.046217 GCCAGTCCCTTTCCCGAC 60.046 66.667 0.00 0.00 0.00 4.79
3345 6635 3.702048 CGCCAGTCCCTTTCCCGA 61.702 66.667 0.00 0.00 0.00 5.14
3348 6638 3.645268 ATGGCGCCAGTCCCTTTCC 62.645 63.158 35.36 0.00 0.00 3.13
3349 6639 2.044946 ATGGCGCCAGTCCCTTTC 60.045 61.111 35.36 0.00 0.00 2.62
3350 6640 2.044946 GATGGCGCCAGTCCCTTT 60.045 61.111 35.36 16.61 0.00 3.11
3351 6641 4.473520 CGATGGCGCCAGTCCCTT 62.474 66.667 35.36 17.47 0.00 3.95
3362 6652 4.504596 TGGGGATGCACCGATGGC 62.505 66.667 0.00 0.00 40.11 4.40
3363 6653 2.516930 GTGGGGATGCACCGATGG 60.517 66.667 0.00 0.00 40.11 3.51
3364 6654 2.516930 GGTGGGGATGCACCGATG 60.517 66.667 0.00 0.00 40.11 3.84
3365 6655 3.014538 TGGTGGGGATGCACCGAT 61.015 61.111 0.00 0.00 44.07 4.18
3366 6656 3.716195 CTGGTGGGGATGCACCGA 61.716 66.667 0.00 0.00 44.07 4.69
3372 6662 3.030168 TACTGCGCTGGTGGGGATG 62.030 63.158 18.98 0.00 0.00 3.51
3373 6663 2.687200 TACTGCGCTGGTGGGGAT 60.687 61.111 18.98 0.00 0.00 3.85
3374 6664 3.702048 GTACTGCGCTGGTGGGGA 61.702 66.667 18.98 0.00 0.00 4.81
3375 6665 4.778143 GGTACTGCGCTGGTGGGG 62.778 72.222 18.98 0.00 0.00 4.96
3376 6666 4.778143 GGGTACTGCGCTGGTGGG 62.778 72.222 18.98 0.00 0.00 4.61
3377 6667 1.895020 TAAGGGTACTGCGCTGGTGG 61.895 60.000 18.98 1.63 40.49 4.61
3378 6668 0.178068 ATAAGGGTACTGCGCTGGTG 59.822 55.000 18.98 4.11 40.49 4.17
3379 6669 0.464452 GATAAGGGTACTGCGCTGGT 59.536 55.000 18.98 14.58 40.49 4.00
3380 6670 0.464036 TGATAAGGGTACTGCGCTGG 59.536 55.000 18.98 9.22 40.49 4.85
3381 6671 1.571919 GTGATAAGGGTACTGCGCTG 58.428 55.000 13.23 13.23 40.49 5.18
3382 6672 0.464452 GGTGATAAGGGTACTGCGCT 59.536 55.000 9.73 0.00 42.61 5.92
3383 6673 0.177141 TGGTGATAAGGGTACTGCGC 59.823 55.000 0.00 0.00 0.00 6.09
3384 6674 1.806623 GCTGGTGATAAGGGTACTGCG 60.807 57.143 0.00 0.00 0.00 5.18
3385 6675 1.475213 GGCTGGTGATAAGGGTACTGC 60.475 57.143 0.00 0.00 0.00 4.40
3386 6676 1.141053 GGGCTGGTGATAAGGGTACTG 59.859 57.143 0.00 0.00 0.00 2.74
3387 6677 1.508256 GGGCTGGTGATAAGGGTACT 58.492 55.000 0.00 0.00 0.00 2.73
3388 6678 0.106149 CGGGCTGGTGATAAGGGTAC 59.894 60.000 0.00 0.00 0.00 3.34
3389 6679 0.031917 TCGGGCTGGTGATAAGGGTA 60.032 55.000 0.00 0.00 0.00 3.69
3390 6680 1.306654 TCGGGCTGGTGATAAGGGT 60.307 57.895 0.00 0.00 0.00 4.34
3391 6681 1.447643 CTCGGGCTGGTGATAAGGG 59.552 63.158 0.00 0.00 0.00 3.95
3392 6682 1.227674 GCTCGGGCTGGTGATAAGG 60.228 63.158 0.00 0.00 35.22 2.69
3393 6683 0.107703 TTGCTCGGGCTGGTGATAAG 60.108 55.000 9.62 0.00 39.59 1.73
3394 6684 0.392461 GTTGCTCGGGCTGGTGATAA 60.392 55.000 9.62 0.00 39.59 1.75
3395 6685 1.220749 GTTGCTCGGGCTGGTGATA 59.779 57.895 9.62 0.00 39.59 2.15
3396 6686 2.045926 GTTGCTCGGGCTGGTGAT 60.046 61.111 9.62 0.00 39.59 3.06
3397 6687 2.410322 AATGTTGCTCGGGCTGGTGA 62.410 55.000 9.62 0.00 39.59 4.02
3398 6688 1.526575 AAATGTTGCTCGGGCTGGTG 61.527 55.000 9.62 0.00 39.59 4.17
3399 6689 0.037590 TAAATGTTGCTCGGGCTGGT 59.962 50.000 9.62 0.00 39.59 4.00
3400 6690 0.734889 CTAAATGTTGCTCGGGCTGG 59.265 55.000 9.62 0.00 39.59 4.85
3401 6691 0.099436 GCTAAATGTTGCTCGGGCTG 59.901 55.000 9.62 0.00 39.59 4.85
3402 6692 0.035056 AGCTAAATGTTGCTCGGGCT 60.035 50.000 9.62 0.00 39.59 5.19
3403 6693 0.811281 AAGCTAAATGTTGCTCGGGC 59.189 50.000 0.00 0.00 38.75 6.13
3404 6694 2.083774 TGAAGCTAAATGTTGCTCGGG 58.916 47.619 0.00 0.00 38.75 5.14
3405 6695 3.624861 AGATGAAGCTAAATGTTGCTCGG 59.375 43.478 0.00 0.00 38.75 4.63
3406 6696 4.260538 GGAGATGAAGCTAAATGTTGCTCG 60.261 45.833 0.00 0.00 38.75 5.03
3407 6697 4.637534 TGGAGATGAAGCTAAATGTTGCTC 59.362 41.667 0.00 0.00 38.75 4.26
3408 6698 4.592942 TGGAGATGAAGCTAAATGTTGCT 58.407 39.130 0.00 0.00 41.82 3.91
3409 6699 4.970662 TGGAGATGAAGCTAAATGTTGC 57.029 40.909 0.00 0.00 0.00 4.17
3410 6700 5.338365 GCTTGGAGATGAAGCTAAATGTTG 58.662 41.667 0.00 0.00 42.21 3.33
3411 6701 5.573337 GCTTGGAGATGAAGCTAAATGTT 57.427 39.130 0.00 0.00 42.21 2.71
3419 6709 0.679002 TGCCAGCTTGGAGATGAAGC 60.679 55.000 6.40 0.00 45.22 3.86
3420 6710 2.054232 ATGCCAGCTTGGAGATGAAG 57.946 50.000 6.40 0.00 40.96 3.02
3421 6711 3.054139 AGTTATGCCAGCTTGGAGATGAA 60.054 43.478 6.40 0.00 40.96 2.57
3422 6712 2.507058 AGTTATGCCAGCTTGGAGATGA 59.493 45.455 6.40 0.00 40.96 2.92
3423 6713 2.877168 GAGTTATGCCAGCTTGGAGATG 59.123 50.000 6.40 0.00 40.96 2.90
3424 6714 2.507058 TGAGTTATGCCAGCTTGGAGAT 59.493 45.455 6.40 0.95 40.96 2.75
3425 6715 1.908619 TGAGTTATGCCAGCTTGGAGA 59.091 47.619 6.40 0.00 40.96 3.71
3426 6716 2.012673 GTGAGTTATGCCAGCTTGGAG 58.987 52.381 6.40 0.00 40.96 3.86
3427 6717 1.350684 TGTGAGTTATGCCAGCTTGGA 59.649 47.619 6.40 0.00 40.96 3.53
3428 6718 1.741706 CTGTGAGTTATGCCAGCTTGG 59.258 52.381 0.00 0.00 41.55 3.61
3429 6719 1.741706 CCTGTGAGTTATGCCAGCTTG 59.258 52.381 0.00 0.00 0.00 4.01
3430 6720 1.352352 ACCTGTGAGTTATGCCAGCTT 59.648 47.619 0.00 0.00 0.00 3.74
3431 6721 0.987294 ACCTGTGAGTTATGCCAGCT 59.013 50.000 0.00 0.00 0.00 4.24
3432 6722 2.691409 TACCTGTGAGTTATGCCAGC 57.309 50.000 0.00 0.00 0.00 4.85
3433 6723 3.055094 ACCTTACCTGTGAGTTATGCCAG 60.055 47.826 0.00 0.00 0.00 4.85
3434 6724 2.910319 ACCTTACCTGTGAGTTATGCCA 59.090 45.455 0.00 0.00 0.00 4.92
3435 6725 3.629142 ACCTTACCTGTGAGTTATGCC 57.371 47.619 0.00 0.00 0.00 4.40
3436 6726 5.080969 TGTACCTTACCTGTGAGTTATGC 57.919 43.478 0.00 0.00 0.00 3.14
3437 6727 7.778083 TGTATGTACCTTACCTGTGAGTTATG 58.222 38.462 0.00 0.00 0.00 1.90
3438 6728 7.966339 TGTATGTACCTTACCTGTGAGTTAT 57.034 36.000 0.00 0.00 0.00 1.89
3439 6729 7.632028 GCATGTATGTACCTTACCTGTGAGTTA 60.632 40.741 0.00 0.00 0.00 2.24
3440 6730 6.640518 CATGTATGTACCTTACCTGTGAGTT 58.359 40.000 0.00 0.00 0.00 3.01
3441 6731 5.395324 GCATGTATGTACCTTACCTGTGAGT 60.395 44.000 0.00 0.00 0.00 3.41
3442 6732 5.050490 GCATGTATGTACCTTACCTGTGAG 58.950 45.833 0.00 0.00 0.00 3.51
3443 6733 4.468153 TGCATGTATGTACCTTACCTGTGA 59.532 41.667 0.00 0.00 0.00 3.58
3444 6734 4.570772 GTGCATGTATGTACCTTACCTGTG 59.429 45.833 0.00 0.00 37.42 3.66
3445 6735 4.224147 TGTGCATGTATGTACCTTACCTGT 59.776 41.667 9.98 0.00 41.82 4.00
3446 6736 4.765273 TGTGCATGTATGTACCTTACCTG 58.235 43.478 9.98 0.00 41.82 4.00
3447 6737 5.630415 ATGTGCATGTATGTACCTTACCT 57.370 39.130 9.98 0.00 41.82 3.08
3448 6738 5.238650 GGAATGTGCATGTATGTACCTTACC 59.761 44.000 9.98 7.03 41.82 2.85
3449 6739 5.820423 TGGAATGTGCATGTATGTACCTTAC 59.180 40.000 9.98 8.07 41.82 2.34
3450 6740 5.995446 TGGAATGTGCATGTATGTACCTTA 58.005 37.500 9.98 0.00 41.82 2.69
3451 6741 4.854173 TGGAATGTGCATGTATGTACCTT 58.146 39.130 9.98 6.91 41.82 3.50
3452 6742 4.454678 CTGGAATGTGCATGTATGTACCT 58.545 43.478 9.98 0.00 41.82 3.08
3453 6743 3.565482 CCTGGAATGTGCATGTATGTACC 59.435 47.826 9.98 0.00 41.82 3.34
3454 6744 4.450976 TCCTGGAATGTGCATGTATGTAC 58.549 43.478 6.20 6.20 42.66 2.90
3455 6745 4.408596 TCTCCTGGAATGTGCATGTATGTA 59.591 41.667 0.00 0.00 0.00 2.29
3456 6746 3.200605 TCTCCTGGAATGTGCATGTATGT 59.799 43.478 0.00 0.00 0.00 2.29
3457 6747 3.562973 GTCTCCTGGAATGTGCATGTATG 59.437 47.826 0.00 0.00 0.00 2.39
3458 6748 3.200605 TGTCTCCTGGAATGTGCATGTAT 59.799 43.478 0.00 0.00 0.00 2.29
3459 6749 2.571202 TGTCTCCTGGAATGTGCATGTA 59.429 45.455 0.00 0.00 0.00 2.29
3460 6750 1.352017 TGTCTCCTGGAATGTGCATGT 59.648 47.619 0.00 0.00 0.00 3.21
3461 6751 2.118313 TGTCTCCTGGAATGTGCATG 57.882 50.000 0.00 0.00 0.00 4.06
3462 6752 2.885135 TTGTCTCCTGGAATGTGCAT 57.115 45.000 0.00 0.00 0.00 3.96
3463 6753 2.655090 TTTGTCTCCTGGAATGTGCA 57.345 45.000 0.00 0.00 0.00 4.57
3464 6754 2.416431 GCATTTGTCTCCTGGAATGTGC 60.416 50.000 0.00 0.00 33.25 4.57
3465 6755 2.821378 TGCATTTGTCTCCTGGAATGTG 59.179 45.455 0.00 0.00 33.25 3.21
3466 6756 2.821969 GTGCATTTGTCTCCTGGAATGT 59.178 45.455 0.00 0.00 33.25 2.71
3467 6757 3.087031 AGTGCATTTGTCTCCTGGAATG 58.913 45.455 0.00 0.00 33.71 2.67
3468 6758 3.446442 AGTGCATTTGTCTCCTGGAAT 57.554 42.857 0.00 0.00 0.00 3.01
3469 6759 2.957402 AGTGCATTTGTCTCCTGGAA 57.043 45.000 0.00 0.00 0.00 3.53
3470 6760 4.263462 ACAATAGTGCATTTGTCTCCTGGA 60.263 41.667 0.00 0.00 30.43 3.86
3471 6761 4.012374 ACAATAGTGCATTTGTCTCCTGG 58.988 43.478 6.77 0.00 30.43 4.45
3472 6762 5.227238 GACAATAGTGCATTTGTCTCCTG 57.773 43.478 22.59 6.83 45.22 3.86
3490 6780 9.279904 CTCTTAAAACGTGTTTGTATTTGACAA 57.720 29.630 0.00 0.00 46.56 3.18
3491 6781 8.666573 TCTCTTAAAACGTGTTTGTATTTGACA 58.333 29.630 0.00 0.00 35.78 3.58
3492 6782 9.659830 ATCTCTTAAAACGTGTTTGTATTTGAC 57.340 29.630 0.00 0.00 32.36 3.18
3493 6783 9.658475 CATCTCTTAAAACGTGTTTGTATTTGA 57.342 29.630 0.00 0.00 32.36 2.69
3494 6784 9.658475 TCATCTCTTAAAACGTGTTTGTATTTG 57.342 29.630 0.00 0.00 32.36 2.32
3496 6786 9.659830 GTTCATCTCTTAAAACGTGTTTGTATT 57.340 29.630 0.00 0.00 32.36 1.89
3497 6787 8.832521 TGTTCATCTCTTAAAACGTGTTTGTAT 58.167 29.630 0.00 0.00 32.36 2.29
3498 6788 8.199176 TGTTCATCTCTTAAAACGTGTTTGTA 57.801 30.769 0.00 0.00 32.36 2.41
3499 6789 7.079182 TGTTCATCTCTTAAAACGTGTTTGT 57.921 32.000 0.00 0.00 32.36 2.83
3500 6790 7.483375 TGTTGTTCATCTCTTAAAACGTGTTTG 59.517 33.333 0.00 0.00 32.36 2.93
3501 6791 7.531716 TGTTGTTCATCTCTTAAAACGTGTTT 58.468 30.769 0.00 0.00 0.00 2.83
3502 6792 7.079182 TGTTGTTCATCTCTTAAAACGTGTT 57.921 32.000 0.00 0.00 0.00 3.32
3503 6793 6.671614 TGTTGTTCATCTCTTAAAACGTGT 57.328 33.333 0.00 0.00 0.00 4.49
3504 6794 8.560576 AATTGTTGTTCATCTCTTAAAACGTG 57.439 30.769 0.00 0.00 0.00 4.49
3512 6802 8.734386 GGACTCAATAATTGTTGTTCATCTCTT 58.266 33.333 13.78 0.00 0.00 2.85
3513 6803 7.884877 TGGACTCAATAATTGTTGTTCATCTCT 59.115 33.333 13.78 0.00 0.00 3.10
3514 6804 8.044060 TGGACTCAATAATTGTTGTTCATCTC 57.956 34.615 13.78 2.69 0.00 2.75
3515 6805 8.408043 TTGGACTCAATAATTGTTGTTCATCT 57.592 30.769 13.78 0.00 0.00 2.90
3516 6806 9.643693 ATTTGGACTCAATAATTGTTGTTCATC 57.356 29.630 13.78 7.91 32.28 2.92
3517 6807 9.426837 CATTTGGACTCAATAATTGTTGTTCAT 57.573 29.630 13.78 0.06 32.28 2.57
3518 6808 8.637099 TCATTTGGACTCAATAATTGTTGTTCA 58.363 29.630 13.78 0.00 32.28 3.18
3519 6809 9.474920 TTCATTTGGACTCAATAATTGTTGTTC 57.525 29.630 13.78 11.24 32.28 3.18
3527 6817 8.844244 GCAGACTATTCATTTGGACTCAATAAT 58.156 33.333 0.00 0.00 32.28 1.28
3528 6818 7.828717 TGCAGACTATTCATTTGGACTCAATAA 59.171 33.333 0.00 0.00 32.28 1.40
3529 6819 7.337938 TGCAGACTATTCATTTGGACTCAATA 58.662 34.615 0.00 0.00 32.28 1.90
3530 6820 6.182627 TGCAGACTATTCATTTGGACTCAAT 58.817 36.000 0.00 0.00 32.28 2.57
3531 6821 5.559770 TGCAGACTATTCATTTGGACTCAA 58.440 37.500 0.00 0.00 0.00 3.02
3532 6822 5.164620 TGCAGACTATTCATTTGGACTCA 57.835 39.130 0.00 0.00 0.00 3.41
3533 6823 6.500684 TTTGCAGACTATTCATTTGGACTC 57.499 37.500 0.00 0.00 0.00 3.36
3534 6824 6.127535 CCATTTGCAGACTATTCATTTGGACT 60.128 38.462 0.00 0.00 0.00 3.85
3535 6825 6.038356 CCATTTGCAGACTATTCATTTGGAC 58.962 40.000 0.00 0.00 0.00 4.02
3536 6826 5.716228 ACCATTTGCAGACTATTCATTTGGA 59.284 36.000 0.00 0.00 0.00 3.53
3537 6827 5.969423 ACCATTTGCAGACTATTCATTTGG 58.031 37.500 0.00 0.00 0.00 3.28
3538 6828 6.311935 CCAACCATTTGCAGACTATTCATTTG 59.688 38.462 0.00 0.00 0.00 2.32
3539 6829 6.400568 CCAACCATTTGCAGACTATTCATTT 58.599 36.000 0.00 0.00 0.00 2.32
3540 6830 5.105228 CCCAACCATTTGCAGACTATTCATT 60.105 40.000 0.00 0.00 0.00 2.57
3541 6831 4.403432 CCCAACCATTTGCAGACTATTCAT 59.597 41.667 0.00 0.00 0.00 2.57
3542 6832 3.763360 CCCAACCATTTGCAGACTATTCA 59.237 43.478 0.00 0.00 0.00 2.57
3543 6833 4.016444 TCCCAACCATTTGCAGACTATTC 58.984 43.478 0.00 0.00 0.00 1.75
3544 6834 4.046286 TCCCAACCATTTGCAGACTATT 57.954 40.909 0.00 0.00 0.00 1.73
3545 6835 3.737559 TCCCAACCATTTGCAGACTAT 57.262 42.857 0.00 0.00 0.00 2.12
3546 6836 3.517296 TTCCCAACCATTTGCAGACTA 57.483 42.857 0.00 0.00 0.00 2.59
3547 6837 2.380064 TTCCCAACCATTTGCAGACT 57.620 45.000 0.00 0.00 0.00 3.24
3548 6838 3.683365 AATTCCCAACCATTTGCAGAC 57.317 42.857 0.00 0.00 0.00 3.51
3549 6839 4.222588 CCTTAATTCCCAACCATTTGCAGA 59.777 41.667 0.00 0.00 0.00 4.26
3550 6840 4.222588 TCCTTAATTCCCAACCATTTGCAG 59.777 41.667 0.00 0.00 0.00 4.41
3551 6841 4.163427 TCCTTAATTCCCAACCATTTGCA 58.837 39.130 0.00 0.00 0.00 4.08
3552 6842 4.383010 CCTCCTTAATTCCCAACCATTTGC 60.383 45.833 0.00 0.00 0.00 3.68
3553 6843 4.777366 ACCTCCTTAATTCCCAACCATTTG 59.223 41.667 0.00 0.00 0.00 2.32
3554 6844 5.023514 ACCTCCTTAATTCCCAACCATTT 57.976 39.130 0.00 0.00 0.00 2.32
3555 6845 4.692523 ACCTCCTTAATTCCCAACCATT 57.307 40.909 0.00 0.00 0.00 3.16
3556 6846 4.692523 AACCTCCTTAATTCCCAACCAT 57.307 40.909 0.00 0.00 0.00 3.55
3557 6847 4.156477 CAAACCTCCTTAATTCCCAACCA 58.844 43.478 0.00 0.00 0.00 3.67
3558 6848 3.056107 GCAAACCTCCTTAATTCCCAACC 60.056 47.826 0.00 0.00 0.00 3.77
3559 6849 3.576550 TGCAAACCTCCTTAATTCCCAAC 59.423 43.478 0.00 0.00 0.00 3.77
3560 6850 3.850752 TGCAAACCTCCTTAATTCCCAA 58.149 40.909 0.00 0.00 0.00 4.12
3561 6851 3.534357 TGCAAACCTCCTTAATTCCCA 57.466 42.857 0.00 0.00 0.00 4.37
3562 6852 5.420725 AATTGCAAACCTCCTTAATTCCC 57.579 39.130 1.71 0.00 0.00 3.97
3563 6853 6.930731 TGTAATTGCAAACCTCCTTAATTCC 58.069 36.000 1.71 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.