Multiple sequence alignment - TraesCS5A01G211300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G211300 chr5A 100.000 2693 0 0 1 2693 426731689 426728997 0.000000e+00 4974.0
1 TraesCS5A01G211300 chr5A 94.100 339 18 2 1 338 119849483 119849820 5.140000e-142 514.0
2 TraesCS5A01G211300 chr5A 93.805 339 19 2 1 338 648617862 648617525 2.390000e-140 508.0
3 TraesCS5A01G211300 chr5A 93.787 338 19 2 1 337 614550443 614550779 8.600000e-140 507.0
4 TraesCS5A01G211300 chr5A 91.589 107 8 1 340 445 98451040 98451146 2.160000e-31 147.0
5 TraesCS5A01G211300 chr5B 90.729 1467 95 22 451 1901 383035251 383036692 0.000000e+00 1917.0
6 TraesCS5A01G211300 chr5B 86.062 452 29 16 1899 2337 383036764 383037194 3.160000e-124 455.0
7 TraesCS5A01G211300 chr5B 88.323 334 39 0 2359 2692 383037185 383037518 4.180000e-108 401.0
8 TraesCS5A01G211300 chr5B 90.476 105 9 1 351 455 55537040 55537143 1.300000e-28 137.0
9 TraesCS5A01G211300 chr5B 75.099 253 52 10 2375 2621 65516086 65516333 1.020000e-19 108.0
10 TraesCS5A01G211300 chr5D 94.590 1109 36 12 805 1901 330078163 330079259 0.000000e+00 1694.0
11 TraesCS5A01G211300 chr5D 89.972 359 18 8 450 801 330077771 330078118 5.290000e-122 448.0
12 TraesCS5A01G211300 chr5D 87.353 340 35 4 2359 2691 330079633 330079971 1.510000e-102 383.0
13 TraesCS5A01G211300 chr5D 88.889 189 13 5 1899 2086 330079308 330079489 2.700000e-55 226.0
14 TraesCS5A01G211300 chr2A 90.153 457 28 10 4 446 87560519 87560066 1.800000e-161 579.0
15 TraesCS5A01G211300 chr4A 94.675 338 17 1 1 338 684919056 684918720 8.540000e-145 523.0
16 TraesCS5A01G211300 chr4A 94.428 341 14 5 1 338 585435664 585435326 1.110000e-143 520.0
17 TraesCS5A01G211300 chr4A 94.118 340 17 3 1 338 12607544 12607206 5.140000e-142 514.0
18 TraesCS5A01G211300 chr3A 94.048 336 17 3 1 335 464434045 464433712 8.600000e-140 507.0
19 TraesCS5A01G211300 chr3A 89.908 109 10 1 340 447 576202560 576202452 3.620000e-29 139.0
20 TraesCS5A01G211300 chr1A 93.787 338 19 2 1 337 29196465 29196801 8.600000e-140 507.0
21 TraesCS5A01G211300 chrUn 92.784 97 7 0 351 447 82576889 82576793 1.010000e-29 141.0
22 TraesCS5A01G211300 chr3D 90.000 110 10 1 340 448 598901173 598901282 1.010000e-29 141.0
23 TraesCS5A01G211300 chr7D 78.873 213 38 6 1251 1460 529956416 529956208 1.300000e-28 137.0
24 TraesCS5A01G211300 chr7B 91.000 100 8 1 340 438 73718732 73718831 1.680000e-27 134.0
25 TraesCS5A01G211300 chr7B 77.934 213 40 6 1251 1460 568107384 568107176 2.810000e-25 126.0
26 TraesCS5A01G211300 chr7A 79.000 200 35 6 1255 1451 609431477 609431282 2.180000e-26 130.0
27 TraesCS5A01G211300 chr7A 89.691 97 9 1 350 446 85134761 85134666 3.640000e-24 122.0
28 TraesCS5A01G211300 chr7A 88.350 103 11 1 343 444 685393956 685393854 3.640000e-24 122.0
29 TraesCS5A01G211300 chr2B 92.222 90 7 0 349 438 714488523 714488612 7.830000e-26 128.0
30 TraesCS5A01G211300 chr6A 77.515 169 31 6 1261 1426 85586704 85586540 7.940000e-16 95.3
31 TraesCS5A01G211300 chr6D 75.843 178 36 6 1251 1425 68098952 68098779 1.720000e-12 84.2
32 TraesCS5A01G211300 chr6B 77.305 141 26 5 1289 1426 143200021 143199884 7.990000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G211300 chr5A 426728997 426731689 2692 True 4974.000000 4974 100.000000 1 2693 1 chr5A.!!$R1 2692
1 TraesCS5A01G211300 chr5B 383035251 383037518 2267 False 924.333333 1917 88.371333 451 2692 3 chr5B.!!$F3 2241
2 TraesCS5A01G211300 chr5D 330077771 330079971 2200 False 687.750000 1694 90.201000 450 2691 4 chr5D.!!$F1 2241

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
364 365 0.036306 AGTCGTGCGGGAAAGGAAAT 59.964 50.0 0.0 0.0 0.0 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2040 2184 0.110486 ACAGTGGAATTGGGACGCTT 59.89 50.0 0.0 0.0 0.0 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 8.950210 TCAGATATCTTTTCACATTTGTCTTCC 58.050 33.333 1.33 0.00 0.00 3.46
51 52 8.186821 CAGATATCTTTTCACATTTGTCTTCCC 58.813 37.037 1.33 0.00 0.00 3.97
52 53 5.728637 ATCTTTTCACATTTGTCTTCCCC 57.271 39.130 0.00 0.00 0.00 4.81
53 54 4.541705 TCTTTTCACATTTGTCTTCCCCA 58.458 39.130 0.00 0.00 0.00 4.96
54 55 4.959210 TCTTTTCACATTTGTCTTCCCCAA 59.041 37.500 0.00 0.00 0.00 4.12
55 56 5.602145 TCTTTTCACATTTGTCTTCCCCAAT 59.398 36.000 0.00 0.00 0.00 3.16
56 57 4.870123 TTCACATTTGTCTTCCCCAATG 57.130 40.909 0.00 0.00 0.00 2.82
57 58 3.164268 TCACATTTGTCTTCCCCAATGG 58.836 45.455 0.00 0.00 0.00 3.16
58 59 2.899256 CACATTTGTCTTCCCCAATGGT 59.101 45.455 0.00 0.00 34.77 3.55
59 60 3.324556 CACATTTGTCTTCCCCAATGGTT 59.675 43.478 0.00 0.00 34.77 3.67
60 61 4.526262 CACATTTGTCTTCCCCAATGGTTA 59.474 41.667 0.00 0.00 34.77 2.85
61 62 5.011533 CACATTTGTCTTCCCCAATGGTTAA 59.988 40.000 0.00 0.00 34.77 2.01
62 63 5.604650 ACATTTGTCTTCCCCAATGGTTAAA 59.395 36.000 0.00 0.00 34.77 1.52
63 64 5.799827 TTTGTCTTCCCCAATGGTTAAAG 57.200 39.130 0.00 0.00 34.77 1.85
64 65 4.463050 TGTCTTCCCCAATGGTTAAAGT 57.537 40.909 0.00 0.00 34.77 2.66
65 66 4.810345 TGTCTTCCCCAATGGTTAAAGTT 58.190 39.130 0.00 0.00 34.77 2.66
66 67 5.954757 TGTCTTCCCCAATGGTTAAAGTTA 58.045 37.500 0.00 0.00 34.77 2.24
67 68 5.771165 TGTCTTCCCCAATGGTTAAAGTTAC 59.229 40.000 0.00 0.00 34.77 2.50
68 69 5.184479 GTCTTCCCCAATGGTTAAAGTTACC 59.816 44.000 0.00 0.00 36.17 2.85
69 70 3.688235 TCCCCAATGGTTAAAGTTACCG 58.312 45.455 0.00 0.00 38.55 4.02
70 71 2.164827 CCCCAATGGTTAAAGTTACCGC 59.835 50.000 0.00 0.00 38.55 5.68
71 72 2.159490 CCCAATGGTTAAAGTTACCGCG 60.159 50.000 0.00 0.00 38.55 6.46
72 73 2.743126 CCAATGGTTAAAGTTACCGCGA 59.257 45.455 8.23 0.00 38.55 5.87
73 74 3.375922 CCAATGGTTAAAGTTACCGCGAT 59.624 43.478 8.23 0.00 38.55 4.58
74 75 4.339429 CAATGGTTAAAGTTACCGCGATG 58.661 43.478 8.23 0.00 38.55 3.84
75 76 3.042871 TGGTTAAAGTTACCGCGATGT 57.957 42.857 8.23 0.00 38.55 3.06
76 77 3.401182 TGGTTAAAGTTACCGCGATGTT 58.599 40.909 8.23 0.00 38.55 2.71
77 78 3.814283 TGGTTAAAGTTACCGCGATGTTT 59.186 39.130 8.23 2.33 38.55 2.83
78 79 4.153256 GGTTAAAGTTACCGCGATGTTTG 58.847 43.478 8.23 0.00 0.00 2.93
79 80 4.319694 GGTTAAAGTTACCGCGATGTTTGT 60.320 41.667 8.23 0.00 0.00 2.83
80 81 5.107143 GGTTAAAGTTACCGCGATGTTTGTA 60.107 40.000 8.23 0.00 0.00 2.41
81 82 6.402442 GGTTAAAGTTACCGCGATGTTTGTAT 60.402 38.462 8.23 0.00 0.00 2.29
82 83 4.852609 AAGTTACCGCGATGTTTGTATC 57.147 40.909 8.23 0.00 0.00 2.24
83 84 4.119442 AGTTACCGCGATGTTTGTATCT 57.881 40.909 8.23 1.59 0.00 1.98
84 85 5.252969 AGTTACCGCGATGTTTGTATCTA 57.747 39.130 8.23 0.00 0.00 1.98
85 86 5.653507 AGTTACCGCGATGTTTGTATCTAA 58.346 37.500 8.23 0.00 0.00 2.10
86 87 6.101332 AGTTACCGCGATGTTTGTATCTAAA 58.899 36.000 8.23 0.00 0.00 1.85
87 88 6.759827 AGTTACCGCGATGTTTGTATCTAAAT 59.240 34.615 8.23 0.00 0.00 1.40
88 89 7.279313 AGTTACCGCGATGTTTGTATCTAAATT 59.721 33.333 8.23 0.00 0.00 1.82
89 90 8.542132 GTTACCGCGATGTTTGTATCTAAATTA 58.458 33.333 8.23 0.00 0.00 1.40
90 91 7.724305 ACCGCGATGTTTGTATCTAAATTAT 57.276 32.000 8.23 0.00 0.00 1.28
91 92 7.793902 ACCGCGATGTTTGTATCTAAATTATC 58.206 34.615 8.23 0.00 0.00 1.75
92 93 7.439955 ACCGCGATGTTTGTATCTAAATTATCA 59.560 33.333 8.23 0.00 0.00 2.15
93 94 7.952101 CCGCGATGTTTGTATCTAAATTATCAG 59.048 37.037 8.23 0.00 0.00 2.90
94 95 7.952101 CGCGATGTTTGTATCTAAATTATCAGG 59.048 37.037 0.00 0.00 0.00 3.86
95 96 8.774586 GCGATGTTTGTATCTAAATTATCAGGT 58.225 33.333 0.00 0.00 0.00 4.00
102 103 9.944376 TTGTATCTAAATTATCAGGTCTATGGC 57.056 33.333 0.00 0.00 0.00 4.40
103 104 8.251026 TGTATCTAAATTATCAGGTCTATGGCG 58.749 37.037 0.00 0.00 0.00 5.69
104 105 6.665992 TCTAAATTATCAGGTCTATGGCGT 57.334 37.500 0.00 0.00 0.00 5.68
105 106 6.455647 TCTAAATTATCAGGTCTATGGCGTG 58.544 40.000 0.00 0.00 0.00 5.34
106 107 4.955811 AATTATCAGGTCTATGGCGTGA 57.044 40.909 0.00 0.00 35.62 4.35
107 108 4.955811 ATTATCAGGTCTATGGCGTGAA 57.044 40.909 0.00 0.00 34.96 3.18
108 109 4.955811 TTATCAGGTCTATGGCGTGAAT 57.044 40.909 0.00 0.00 34.96 2.57
109 110 2.602257 TCAGGTCTATGGCGTGAATG 57.398 50.000 0.00 0.00 0.00 2.67
110 111 1.831106 TCAGGTCTATGGCGTGAATGT 59.169 47.619 0.00 0.00 0.00 2.71
111 112 2.236146 TCAGGTCTATGGCGTGAATGTT 59.764 45.455 0.00 0.00 0.00 2.71
112 113 3.449377 TCAGGTCTATGGCGTGAATGTTA 59.551 43.478 0.00 0.00 0.00 2.41
113 114 4.100963 TCAGGTCTATGGCGTGAATGTTAT 59.899 41.667 0.00 0.00 0.00 1.89
114 115 4.212004 CAGGTCTATGGCGTGAATGTTATG 59.788 45.833 0.00 0.00 0.00 1.90
115 116 3.498397 GGTCTATGGCGTGAATGTTATGG 59.502 47.826 0.00 0.00 0.00 2.74
116 117 4.127171 GTCTATGGCGTGAATGTTATGGT 58.873 43.478 0.00 0.00 0.00 3.55
117 118 4.024893 GTCTATGGCGTGAATGTTATGGTG 60.025 45.833 0.00 0.00 0.00 4.17
118 119 0.808125 TGGCGTGAATGTTATGGTGC 59.192 50.000 0.00 0.00 0.00 5.01
119 120 1.094785 GGCGTGAATGTTATGGTGCT 58.905 50.000 0.00 0.00 0.00 4.40
120 121 2.285083 GGCGTGAATGTTATGGTGCTA 58.715 47.619 0.00 0.00 0.00 3.49
121 122 2.878406 GGCGTGAATGTTATGGTGCTAT 59.122 45.455 0.00 0.00 0.00 2.97
122 123 3.315191 GGCGTGAATGTTATGGTGCTATT 59.685 43.478 0.00 0.00 0.00 1.73
123 124 4.202010 GGCGTGAATGTTATGGTGCTATTT 60.202 41.667 0.00 0.00 0.00 1.40
124 125 5.008217 GGCGTGAATGTTATGGTGCTATTTA 59.992 40.000 0.00 0.00 0.00 1.40
125 126 5.907391 GCGTGAATGTTATGGTGCTATTTAC 59.093 40.000 0.00 0.00 0.00 2.01
126 127 6.457663 GCGTGAATGTTATGGTGCTATTTACA 60.458 38.462 0.00 0.00 0.00 2.41
127 128 7.125755 CGTGAATGTTATGGTGCTATTTACAG 58.874 38.462 0.00 0.00 0.00 2.74
128 129 7.011016 CGTGAATGTTATGGTGCTATTTACAGA 59.989 37.037 0.00 0.00 0.00 3.41
129 130 8.673711 GTGAATGTTATGGTGCTATTTACAGAA 58.326 33.333 0.00 0.00 0.00 3.02
130 131 9.237187 TGAATGTTATGGTGCTATTTACAGAAA 57.763 29.630 0.00 0.00 0.00 2.52
135 136 9.946165 GTTATGGTGCTATTTACAGAAATTACC 57.054 33.333 0.00 0.00 36.62 2.85
136 137 6.671614 TGGTGCTATTTACAGAAATTACCG 57.328 37.500 0.00 0.00 36.30 4.02
137 138 6.408035 TGGTGCTATTTACAGAAATTACCGA 58.592 36.000 0.00 0.00 36.30 4.69
138 139 6.537301 TGGTGCTATTTACAGAAATTACCGAG 59.463 38.462 0.00 0.00 36.30 4.63
139 140 6.018180 GGTGCTATTTACAGAAATTACCGAGG 60.018 42.308 0.00 0.00 36.62 4.63
140 141 6.018180 GTGCTATTTACAGAAATTACCGAGGG 60.018 42.308 0.00 0.00 36.62 4.30
141 142 6.126997 TGCTATTTACAGAAATTACCGAGGGA 60.127 38.462 0.00 0.00 36.62 4.20
142 143 6.202379 GCTATTTACAGAAATTACCGAGGGAC 59.798 42.308 0.00 0.00 36.62 4.46
143 144 2.667473 ACAGAAATTACCGAGGGACG 57.333 50.000 0.00 0.00 42.18 4.79
152 153 2.738480 CGAGGGACGGGTTCAACA 59.262 61.111 0.00 0.00 38.46 3.33
153 154 1.070105 CGAGGGACGGGTTCAACAA 59.930 57.895 0.00 0.00 38.46 2.83
154 155 0.533308 CGAGGGACGGGTTCAACAAA 60.533 55.000 0.00 0.00 38.46 2.83
155 156 1.880646 CGAGGGACGGGTTCAACAAAT 60.881 52.381 0.00 0.00 38.46 2.32
156 157 2.235891 GAGGGACGGGTTCAACAAATT 58.764 47.619 0.00 0.00 0.00 1.82
157 158 2.626266 GAGGGACGGGTTCAACAAATTT 59.374 45.455 0.00 0.00 0.00 1.82
158 159 3.822167 GAGGGACGGGTTCAACAAATTTA 59.178 43.478 0.00 0.00 0.00 1.40
159 160 4.412843 AGGGACGGGTTCAACAAATTTAT 58.587 39.130 0.00 0.00 0.00 1.40
160 161 4.836175 AGGGACGGGTTCAACAAATTTATT 59.164 37.500 0.00 0.00 0.00 1.40
161 162 5.047590 AGGGACGGGTTCAACAAATTTATTC 60.048 40.000 0.00 0.00 0.00 1.75
162 163 5.165676 GGACGGGTTCAACAAATTTATTCC 58.834 41.667 0.00 0.00 0.00 3.01
163 164 5.142061 ACGGGTTCAACAAATTTATTCCC 57.858 39.130 0.00 0.00 0.00 3.97
164 165 4.589374 ACGGGTTCAACAAATTTATTCCCA 59.411 37.500 5.56 0.00 33.33 4.37
165 166 5.070580 ACGGGTTCAACAAATTTATTCCCAA 59.929 36.000 5.56 0.00 33.33 4.12
166 167 6.169800 CGGGTTCAACAAATTTATTCCCAAT 58.830 36.000 5.56 0.00 33.33 3.16
167 168 6.091986 CGGGTTCAACAAATTTATTCCCAATG 59.908 38.462 5.56 0.00 33.33 2.82
168 169 7.164803 GGGTTCAACAAATTTATTCCCAATGA 58.835 34.615 0.66 0.00 33.33 2.57
169 170 7.828717 GGGTTCAACAAATTTATTCCCAATGAT 59.171 33.333 0.66 0.00 33.33 2.45
170 171 8.882736 GGTTCAACAAATTTATTCCCAATGATC 58.117 33.333 0.00 0.00 0.00 2.92
171 172 9.434420 GTTCAACAAATTTATTCCCAATGATCA 57.566 29.630 0.00 0.00 0.00 2.92
180 181 8.657387 TTTATTCCCAATGATCAAAGTTACCA 57.343 30.769 0.00 0.00 0.00 3.25
181 182 5.975693 TTCCCAATGATCAAAGTTACCAC 57.024 39.130 0.00 0.00 0.00 4.16
182 183 4.006989 TCCCAATGATCAAAGTTACCACG 58.993 43.478 0.00 0.00 0.00 4.94
183 184 4.006989 CCCAATGATCAAAGTTACCACGA 58.993 43.478 0.00 0.00 0.00 4.35
184 185 4.640201 CCCAATGATCAAAGTTACCACGAT 59.360 41.667 0.00 0.00 0.00 3.73
185 186 5.449041 CCCAATGATCAAAGTTACCACGATG 60.449 44.000 0.00 0.00 0.00 3.84
186 187 4.882671 ATGATCAAAGTTACCACGATGC 57.117 40.909 0.00 0.00 0.00 3.91
187 188 3.937814 TGATCAAAGTTACCACGATGCT 58.062 40.909 0.00 0.00 0.00 3.79
188 189 4.323417 TGATCAAAGTTACCACGATGCTT 58.677 39.130 0.00 0.00 0.00 3.91
189 190 4.154015 TGATCAAAGTTACCACGATGCTTG 59.846 41.667 0.00 0.00 0.00 4.01
190 191 3.734463 TCAAAGTTACCACGATGCTTGA 58.266 40.909 0.00 0.00 0.00 3.02
191 192 4.130857 TCAAAGTTACCACGATGCTTGAA 58.869 39.130 0.00 0.00 0.00 2.69
192 193 4.576873 TCAAAGTTACCACGATGCTTGAAA 59.423 37.500 0.00 0.00 0.00 2.69
193 194 4.483476 AAGTTACCACGATGCTTGAAAC 57.517 40.909 0.00 0.00 0.00 2.78
194 195 3.472652 AGTTACCACGATGCTTGAAACA 58.527 40.909 0.00 0.00 0.00 2.83
195 196 3.880490 AGTTACCACGATGCTTGAAACAA 59.120 39.130 0.00 0.00 0.00 2.83
196 197 4.336993 AGTTACCACGATGCTTGAAACAAA 59.663 37.500 0.00 0.00 0.00 2.83
197 198 3.791973 ACCACGATGCTTGAAACAAAA 57.208 38.095 0.00 0.00 0.00 2.44
198 199 4.116747 ACCACGATGCTTGAAACAAAAA 57.883 36.364 0.00 0.00 0.00 1.94
199 200 4.111916 ACCACGATGCTTGAAACAAAAAG 58.888 39.130 0.00 0.00 0.00 2.27
200 201 4.111916 CCACGATGCTTGAAACAAAAAGT 58.888 39.130 0.00 0.00 0.00 2.66
201 202 4.566360 CCACGATGCTTGAAACAAAAAGTT 59.434 37.500 0.00 0.00 43.89 2.66
217 218 9.816354 AACAAAAAGTTTTCAGTGCTAACATAT 57.184 25.926 0.32 0.00 37.03 1.78
218 219 9.816354 ACAAAAAGTTTTCAGTGCTAACATATT 57.184 25.926 0.32 1.07 0.00 1.28
224 225 8.244113 AGTTTTCAGTGCTAACATATTAAAGGC 58.756 33.333 9.06 0.00 0.00 4.35
225 226 7.695480 TTTCAGTGCTAACATATTAAAGGCA 57.305 32.000 0.00 0.00 0.00 4.75
226 227 7.695480 TTCAGTGCTAACATATTAAAGGCAA 57.305 32.000 0.00 0.00 0.00 4.52
227 228 7.695480 TCAGTGCTAACATATTAAAGGCAAA 57.305 32.000 0.00 0.00 0.00 3.68
228 229 8.116651 TCAGTGCTAACATATTAAAGGCAAAA 57.883 30.769 0.00 0.00 0.00 2.44
229 230 8.580720 TCAGTGCTAACATATTAAAGGCAAAAA 58.419 29.630 0.00 0.00 0.00 1.94
230 231 8.647226 CAGTGCTAACATATTAAAGGCAAAAAC 58.353 33.333 0.00 0.00 0.00 2.43
231 232 8.364142 AGTGCTAACATATTAAAGGCAAAAACA 58.636 29.630 0.00 0.00 0.00 2.83
232 233 9.150348 GTGCTAACATATTAAAGGCAAAAACAT 57.850 29.630 0.00 0.00 0.00 2.71
233 234 9.149225 TGCTAACATATTAAAGGCAAAAACATG 57.851 29.630 0.00 0.00 0.00 3.21
234 235 9.150348 GCTAACATATTAAAGGCAAAAACATGT 57.850 29.630 0.00 0.00 0.00 3.21
237 238 9.553064 AACATATTAAAGGCAAAAACATGTCAA 57.447 25.926 0.00 0.00 0.00 3.18
238 239 9.553064 ACATATTAAAGGCAAAAACATGTCAAA 57.447 25.926 0.00 0.00 0.00 2.69
261 262 7.597288 AAAAACAGTATTTCCCTTAGCTTGT 57.403 32.000 0.00 0.00 0.00 3.16
262 263 7.597288 AAAACAGTATTTCCCTTAGCTTGTT 57.403 32.000 0.00 0.00 0.00 2.83
263 264 6.819397 AACAGTATTTCCCTTAGCTTGTTC 57.181 37.500 0.00 0.00 0.00 3.18
264 265 4.935808 ACAGTATTTCCCTTAGCTTGTTCG 59.064 41.667 0.00 0.00 0.00 3.95
265 266 5.175859 CAGTATTTCCCTTAGCTTGTTCGA 58.824 41.667 0.00 0.00 0.00 3.71
266 267 5.063564 CAGTATTTCCCTTAGCTTGTTCGAC 59.936 44.000 0.00 0.00 0.00 4.20
267 268 3.478857 TTTCCCTTAGCTTGTTCGACA 57.521 42.857 0.00 0.00 0.00 4.35
268 269 3.478857 TTCCCTTAGCTTGTTCGACAA 57.521 42.857 0.00 0.00 36.54 3.18
269 270 3.695830 TCCCTTAGCTTGTTCGACAAT 57.304 42.857 0.00 0.00 37.48 2.71
270 271 3.334691 TCCCTTAGCTTGTTCGACAATG 58.665 45.455 0.00 0.00 37.48 2.82
271 272 3.007506 TCCCTTAGCTTGTTCGACAATGA 59.992 43.478 0.00 0.00 37.48 2.57
272 273 3.372206 CCCTTAGCTTGTTCGACAATGAG 59.628 47.826 0.00 0.00 37.48 2.90
273 274 3.997021 CCTTAGCTTGTTCGACAATGAGT 59.003 43.478 0.00 0.00 37.48 3.41
274 275 4.143030 CCTTAGCTTGTTCGACAATGAGTG 60.143 45.833 0.00 0.00 37.48 3.51
275 276 2.838736 AGCTTGTTCGACAATGAGTGT 58.161 42.857 0.00 0.00 45.74 3.55
286 287 4.478206 ACAATGAGTGTCATAGGTGAGG 57.522 45.455 0.00 0.00 35.76 3.86
287 288 3.840666 ACAATGAGTGTCATAGGTGAGGT 59.159 43.478 0.00 0.00 35.76 3.85
288 289 4.186926 CAATGAGTGTCATAGGTGAGGTG 58.813 47.826 0.00 0.00 35.76 4.00
289 290 2.179427 TGAGTGTCATAGGTGAGGTGG 58.821 52.381 0.00 0.00 34.36 4.61
290 291 2.180276 GAGTGTCATAGGTGAGGTGGT 58.820 52.381 0.00 0.00 34.36 4.16
291 292 2.567615 GAGTGTCATAGGTGAGGTGGTT 59.432 50.000 0.00 0.00 34.36 3.67
292 293 3.767673 GAGTGTCATAGGTGAGGTGGTTA 59.232 47.826 0.00 0.00 34.36 2.85
293 294 3.769844 AGTGTCATAGGTGAGGTGGTTAG 59.230 47.826 0.00 0.00 34.36 2.34
294 295 2.500098 TGTCATAGGTGAGGTGGTTAGC 59.500 50.000 0.00 0.00 34.36 3.09
295 296 2.766828 GTCATAGGTGAGGTGGTTAGCT 59.233 50.000 0.00 0.00 34.36 3.32
296 297 3.197983 GTCATAGGTGAGGTGGTTAGCTT 59.802 47.826 0.00 0.00 34.36 3.74
297 298 3.451178 TCATAGGTGAGGTGGTTAGCTTC 59.549 47.826 0.00 0.00 34.13 3.86
298 299 0.984995 AGGTGAGGTGGTTAGCTTCC 59.015 55.000 0.00 0.00 34.13 3.46
299 300 0.984995 GGTGAGGTGGTTAGCTTCCT 59.015 55.000 0.00 0.00 34.13 3.36
300 301 1.351350 GGTGAGGTGGTTAGCTTCCTT 59.649 52.381 0.00 0.00 34.13 3.36
301 302 2.224793 GGTGAGGTGGTTAGCTTCCTTT 60.225 50.000 0.00 0.00 34.13 3.11
302 303 2.814336 GTGAGGTGGTTAGCTTCCTTTG 59.186 50.000 0.00 0.00 34.13 2.77
303 304 2.441750 TGAGGTGGTTAGCTTCCTTTGT 59.558 45.455 0.00 0.00 34.13 2.83
304 305 3.117663 TGAGGTGGTTAGCTTCCTTTGTT 60.118 43.478 0.00 0.00 34.13 2.83
305 306 3.222603 AGGTGGTTAGCTTCCTTTGTTG 58.777 45.455 0.00 0.00 0.00 3.33
306 307 3.117663 AGGTGGTTAGCTTCCTTTGTTGA 60.118 43.478 0.00 0.00 0.00 3.18
307 308 3.826729 GGTGGTTAGCTTCCTTTGTTGAT 59.173 43.478 0.00 0.00 0.00 2.57
308 309 4.280929 GGTGGTTAGCTTCCTTTGTTGATT 59.719 41.667 0.00 0.00 0.00 2.57
309 310 5.475564 GGTGGTTAGCTTCCTTTGTTGATTA 59.524 40.000 0.00 0.00 0.00 1.75
310 311 6.379386 GTGGTTAGCTTCCTTTGTTGATTAC 58.621 40.000 0.00 0.00 0.00 1.89
311 312 5.475564 TGGTTAGCTTCCTTTGTTGATTACC 59.524 40.000 0.00 0.00 0.00 2.85
312 313 5.710567 GGTTAGCTTCCTTTGTTGATTACCT 59.289 40.000 0.00 0.00 0.00 3.08
313 314 6.349363 GGTTAGCTTCCTTTGTTGATTACCTG 60.349 42.308 0.00 0.00 0.00 4.00
314 315 4.729868 AGCTTCCTTTGTTGATTACCTGT 58.270 39.130 0.00 0.00 0.00 4.00
315 316 5.876357 AGCTTCCTTTGTTGATTACCTGTA 58.124 37.500 0.00 0.00 0.00 2.74
316 317 5.940470 AGCTTCCTTTGTTGATTACCTGTAG 59.060 40.000 0.00 0.00 0.00 2.74
317 318 5.938125 GCTTCCTTTGTTGATTACCTGTAGA 59.062 40.000 0.00 0.00 0.00 2.59
318 319 6.128254 GCTTCCTTTGTTGATTACCTGTAGAC 60.128 42.308 0.00 0.00 0.00 2.59
319 320 5.801380 TCCTTTGTTGATTACCTGTAGACC 58.199 41.667 0.00 0.00 0.00 3.85
320 321 5.308497 TCCTTTGTTGATTACCTGTAGACCA 59.692 40.000 0.00 0.00 0.00 4.02
321 322 6.001460 CCTTTGTTGATTACCTGTAGACCAA 58.999 40.000 0.00 0.00 0.00 3.67
322 323 6.488683 CCTTTGTTGATTACCTGTAGACCAAA 59.511 38.462 0.00 0.00 0.00 3.28
323 324 7.176690 CCTTTGTTGATTACCTGTAGACCAAAT 59.823 37.037 0.00 0.00 0.00 2.32
324 325 9.226606 CTTTGTTGATTACCTGTAGACCAAATA 57.773 33.333 0.00 0.00 0.00 1.40
325 326 9.747898 TTTGTTGATTACCTGTAGACCAAATAT 57.252 29.630 0.00 0.00 0.00 1.28
326 327 8.958119 TGTTGATTACCTGTAGACCAAATATC 57.042 34.615 0.00 0.00 0.00 1.63
327 328 8.544622 TGTTGATTACCTGTAGACCAAATATCA 58.455 33.333 0.00 0.00 0.00 2.15
328 329 9.391006 GTTGATTACCTGTAGACCAAATATCAA 57.609 33.333 0.00 0.00 0.00 2.57
329 330 9.967451 TTGATTACCTGTAGACCAAATATCAAA 57.033 29.630 0.00 0.00 0.00 2.69
332 333 8.974060 TTACCTGTAGACCAAATATCAAATCC 57.026 34.615 0.00 0.00 0.00 3.01
333 334 7.213178 ACCTGTAGACCAAATATCAAATCCT 57.787 36.000 0.00 0.00 0.00 3.24
334 335 8.331931 ACCTGTAGACCAAATATCAAATCCTA 57.668 34.615 0.00 0.00 0.00 2.94
335 336 8.432805 ACCTGTAGACCAAATATCAAATCCTAG 58.567 37.037 0.00 0.00 0.00 3.02
336 337 8.432805 CCTGTAGACCAAATATCAAATCCTAGT 58.567 37.037 0.00 0.00 0.00 2.57
337 338 9.482627 CTGTAGACCAAATATCAAATCCTAGTC 57.517 37.037 0.00 0.00 0.00 2.59
338 339 8.141909 TGTAGACCAAATATCAAATCCTAGTCG 58.858 37.037 0.00 0.00 0.00 4.18
339 340 7.361457 AGACCAAATATCAAATCCTAGTCGA 57.639 36.000 0.00 0.00 0.00 4.20
340 341 7.967908 AGACCAAATATCAAATCCTAGTCGAT 58.032 34.615 0.00 0.00 0.00 3.59
341 342 8.091449 AGACCAAATATCAAATCCTAGTCGATC 58.909 37.037 0.00 0.00 0.00 3.69
342 343 6.868864 ACCAAATATCAAATCCTAGTCGATCG 59.131 38.462 9.36 9.36 0.00 3.69
343 344 6.311445 CCAAATATCAAATCCTAGTCGATCGG 59.689 42.308 16.41 0.00 0.00 4.18
344 345 3.944055 ATCAAATCCTAGTCGATCGGG 57.056 47.619 16.41 8.59 0.00 5.14
345 346 2.940158 TCAAATCCTAGTCGATCGGGA 58.060 47.619 16.41 14.10 0.00 5.14
346 347 2.885266 TCAAATCCTAGTCGATCGGGAG 59.115 50.000 16.41 9.80 0.00 4.30
347 348 2.623889 CAAATCCTAGTCGATCGGGAGT 59.376 50.000 16.41 10.22 0.00 3.85
348 349 2.188062 ATCCTAGTCGATCGGGAGTC 57.812 55.000 16.41 1.52 0.00 3.36
349 350 0.249784 TCCTAGTCGATCGGGAGTCG 60.250 60.000 16.41 0.00 40.30 4.18
350 351 0.532417 CCTAGTCGATCGGGAGTCGT 60.532 60.000 16.41 0.00 39.91 4.34
351 352 0.582482 CTAGTCGATCGGGAGTCGTG 59.418 60.000 16.41 0.00 39.91 4.35
352 353 1.434622 TAGTCGATCGGGAGTCGTGC 61.435 60.000 16.41 0.00 39.91 5.34
353 354 3.872728 TCGATCGGGAGTCGTGCG 61.873 66.667 16.41 0.00 39.91 5.34
354 355 4.907034 CGATCGGGAGTCGTGCGG 62.907 72.222 7.38 0.00 40.32 5.69
355 356 4.570663 GATCGGGAGTCGTGCGGG 62.571 72.222 0.00 0.00 40.32 6.13
358 359 4.367023 CGGGAGTCGTGCGGGAAA 62.367 66.667 0.00 0.00 0.00 3.13
359 360 2.434359 GGGAGTCGTGCGGGAAAG 60.434 66.667 0.00 0.00 0.00 2.62
360 361 2.434359 GGAGTCGTGCGGGAAAGG 60.434 66.667 0.00 0.00 0.00 3.11
361 362 2.654877 GAGTCGTGCGGGAAAGGA 59.345 61.111 0.00 0.00 0.00 3.36
362 363 1.005394 GAGTCGTGCGGGAAAGGAA 60.005 57.895 0.00 0.00 0.00 3.36
363 364 0.601841 GAGTCGTGCGGGAAAGGAAA 60.602 55.000 0.00 0.00 0.00 3.13
364 365 0.036306 AGTCGTGCGGGAAAGGAAAT 59.964 50.000 0.00 0.00 0.00 2.17
365 366 1.276989 AGTCGTGCGGGAAAGGAAATA 59.723 47.619 0.00 0.00 0.00 1.40
366 367 1.664151 GTCGTGCGGGAAAGGAAATAG 59.336 52.381 0.00 0.00 0.00 1.73
367 368 1.551430 TCGTGCGGGAAAGGAAATAGA 59.449 47.619 0.00 0.00 0.00 1.98
368 369 2.169769 TCGTGCGGGAAAGGAAATAGAT 59.830 45.455 0.00 0.00 0.00 1.98
369 370 2.544267 CGTGCGGGAAAGGAAATAGATC 59.456 50.000 0.00 0.00 0.00 2.75
370 371 2.544267 GTGCGGGAAAGGAAATAGATCG 59.456 50.000 0.00 0.00 0.00 3.69
371 372 2.143925 GCGGGAAAGGAAATAGATCGG 58.856 52.381 0.00 0.00 0.00 4.18
372 373 2.767505 CGGGAAAGGAAATAGATCGGG 58.232 52.381 0.00 0.00 0.00 5.14
373 374 2.367567 CGGGAAAGGAAATAGATCGGGA 59.632 50.000 0.00 0.00 0.00 5.14
374 375 3.555168 CGGGAAAGGAAATAGATCGGGAG 60.555 52.174 0.00 0.00 0.00 4.30
375 376 3.244596 GGGAAAGGAAATAGATCGGGAGG 60.245 52.174 0.00 0.00 0.00 4.30
376 377 3.646637 GGAAAGGAAATAGATCGGGAGGA 59.353 47.826 0.00 0.00 0.00 3.71
377 378 4.102681 GGAAAGGAAATAGATCGGGAGGAA 59.897 45.833 0.00 0.00 0.00 3.36
378 379 5.397559 GGAAAGGAAATAGATCGGGAGGAAA 60.398 44.000 0.00 0.00 0.00 3.13
379 380 4.691326 AGGAAATAGATCGGGAGGAAAC 57.309 45.455 0.00 0.00 0.00 2.78
381 382 4.101741 AGGAAATAGATCGGGAGGAAACTG 59.898 45.833 0.00 0.00 44.43 3.16
382 383 4.101119 GGAAATAGATCGGGAGGAAACTGA 59.899 45.833 0.00 0.00 44.43 3.41
383 384 4.674281 AATAGATCGGGAGGAAACTGAC 57.326 45.455 0.00 0.00 44.43 3.51
384 385 0.818296 AGATCGGGAGGAAACTGACG 59.182 55.000 0.00 0.00 44.43 4.35
385 386 0.179108 GATCGGGAGGAAACTGACGG 60.179 60.000 0.00 0.00 44.43 4.79
386 387 2.240162 ATCGGGAGGAAACTGACGGC 62.240 60.000 0.00 0.00 44.43 5.68
387 388 2.434359 GGGAGGAAACTGACGGCG 60.434 66.667 4.80 4.80 44.43 6.46
388 389 3.119096 GGAGGAAACTGACGGCGC 61.119 66.667 6.90 0.00 44.43 6.53
389 390 2.048127 GAGGAAACTGACGGCGCT 60.048 61.111 6.90 0.00 44.43 5.92
390 391 2.357517 AGGAAACTGACGGCGCTG 60.358 61.111 16.39 16.39 41.13 5.18
391 392 3.423154 GGAAACTGACGGCGCTGG 61.423 66.667 22.44 9.44 0.00 4.85
392 393 2.357034 GAAACTGACGGCGCTGGA 60.357 61.111 22.44 5.54 0.00 3.86
393 394 1.741770 GAAACTGACGGCGCTGGAT 60.742 57.895 22.44 0.00 0.00 3.41
394 395 1.970917 GAAACTGACGGCGCTGGATG 61.971 60.000 22.44 11.83 0.00 3.51
404 405 3.171987 GCTGGATGCGTGTGACAG 58.828 61.111 0.00 0.00 0.00 3.51
405 406 1.669115 GCTGGATGCGTGTGACAGT 60.669 57.895 0.00 0.00 0.00 3.55
406 407 1.230635 GCTGGATGCGTGTGACAGTT 61.231 55.000 0.00 0.00 0.00 3.16
407 408 1.229428 CTGGATGCGTGTGACAGTTT 58.771 50.000 0.00 0.00 0.00 2.66
408 409 1.195448 CTGGATGCGTGTGACAGTTTC 59.805 52.381 0.00 0.00 0.00 2.78
409 410 0.163788 GGATGCGTGTGACAGTTTCG 59.836 55.000 0.00 0.00 0.00 3.46
410 411 0.451135 GATGCGTGTGACAGTTTCGC 60.451 55.000 10.76 10.76 45.70 4.70
411 412 3.010767 GCGTGTGACAGTTTCGCA 58.989 55.556 12.46 0.00 45.01 5.10
412 413 1.350319 GCGTGTGACAGTTTCGCAA 59.650 52.632 12.46 0.00 46.41 4.85
413 414 0.041312 GCGTGTGACAGTTTCGCAAT 60.041 50.000 12.46 0.00 46.41 3.56
414 415 1.937359 CGTGTGACAGTTTCGCAATC 58.063 50.000 0.00 0.00 46.41 2.67
415 416 1.526887 CGTGTGACAGTTTCGCAATCT 59.473 47.619 0.00 0.00 46.41 2.40
416 417 2.660094 CGTGTGACAGTTTCGCAATCTG 60.660 50.000 0.00 0.00 46.41 2.90
417 418 2.287915 GTGTGACAGTTTCGCAATCTGT 59.712 45.455 10.45 10.45 46.41 3.41
421 422 2.560504 ACAGTTTCGCAATCTGTCACA 58.439 42.857 6.73 0.00 37.84 3.58
422 423 2.287915 ACAGTTTCGCAATCTGTCACAC 59.712 45.455 6.73 0.00 37.84 3.82
423 424 1.526887 AGTTTCGCAATCTGTCACACG 59.473 47.619 0.00 0.00 0.00 4.49
424 425 0.865111 TTTCGCAATCTGTCACACGG 59.135 50.000 0.00 0.00 0.00 4.94
425 426 0.249699 TTCGCAATCTGTCACACGGT 60.250 50.000 0.00 0.00 0.00 4.83
426 427 0.249699 TCGCAATCTGTCACACGGTT 60.250 50.000 0.00 0.00 0.00 4.44
427 428 0.110688 CGCAATCTGTCACACGGTTG 60.111 55.000 0.00 0.00 0.00 3.77
428 429 0.385974 GCAATCTGTCACACGGTTGC 60.386 55.000 8.78 8.78 35.79 4.17
429 430 0.238289 CAATCTGTCACACGGTTGCC 59.762 55.000 0.00 0.00 0.00 4.52
430 431 0.179032 AATCTGTCACACGGTTGCCA 60.179 50.000 0.00 0.00 0.00 4.92
431 432 0.036732 ATCTGTCACACGGTTGCCAT 59.963 50.000 0.00 0.00 0.00 4.40
432 433 0.682292 TCTGTCACACGGTTGCCATA 59.318 50.000 0.00 0.00 0.00 2.74
433 434 1.277842 TCTGTCACACGGTTGCCATAT 59.722 47.619 0.00 0.00 0.00 1.78
434 435 2.498078 TCTGTCACACGGTTGCCATATA 59.502 45.455 0.00 0.00 0.00 0.86
435 436 2.607635 CTGTCACACGGTTGCCATATAC 59.392 50.000 0.00 0.00 0.00 1.47
436 437 2.028020 TGTCACACGGTTGCCATATACA 60.028 45.455 0.00 0.00 0.00 2.29
437 438 3.202906 GTCACACGGTTGCCATATACAT 58.797 45.455 0.00 0.00 0.00 2.29
438 439 4.141914 TGTCACACGGTTGCCATATACATA 60.142 41.667 0.00 0.00 0.00 2.29
439 440 4.994852 GTCACACGGTTGCCATATACATAT 59.005 41.667 0.00 0.00 0.00 1.78
440 441 5.468746 GTCACACGGTTGCCATATACATATT 59.531 40.000 0.00 0.00 0.00 1.28
441 442 5.699001 TCACACGGTTGCCATATACATATTC 59.301 40.000 0.00 0.00 0.00 1.75
442 443 5.001232 ACACGGTTGCCATATACATATTCC 58.999 41.667 0.00 0.00 0.00 3.01
443 444 4.092821 CACGGTTGCCATATACATATTCCG 59.907 45.833 0.00 0.00 40.00 4.30
444 445 4.250464 CGGTTGCCATATACATATTCCGT 58.750 43.478 0.00 0.00 0.00 4.69
445 446 4.693566 CGGTTGCCATATACATATTCCGTT 59.306 41.667 0.00 0.00 0.00 4.44
446 447 5.870433 CGGTTGCCATATACATATTCCGTTA 59.130 40.000 0.00 0.00 0.00 3.18
447 448 6.369340 CGGTTGCCATATACATATTCCGTTAA 59.631 38.462 0.00 0.00 0.00 2.01
448 449 7.095144 CGGTTGCCATATACATATTCCGTTAAA 60.095 37.037 0.00 0.00 0.00 1.52
472 473 8.958119 AATAAATAATCGGCAGTTGACTCTTA 57.042 30.769 0.00 0.00 0.00 2.10
508 512 9.425248 TTTCAGAAATTCAGCCCTGATATTTAT 57.575 29.630 13.38 10.20 39.64 1.40
509 513 9.425248 TTCAGAAATTCAGCCCTGATATTTATT 57.575 29.630 13.38 3.72 39.64 1.40
510 514 9.425248 TCAGAAATTCAGCCCTGATATTTATTT 57.575 29.630 13.38 9.73 39.64 1.40
572 576 6.026513 GCACAATGCAGAAGAAAAGAGTATC 58.973 40.000 0.00 0.00 44.26 2.24
574 578 7.886496 GCACAATGCAGAAGAAAAGAGTATCTC 60.886 40.741 0.00 0.00 45.02 2.75
759 767 2.550606 GGATCAAAGCAAACACACCGTA 59.449 45.455 0.00 0.00 0.00 4.02
775 783 3.695060 CACCGTATTCCCGCTAGATATCT 59.305 47.826 10.73 10.73 0.00 1.98
776 784 3.946558 ACCGTATTCCCGCTAGATATCTC 59.053 47.826 8.95 0.00 0.00 2.75
788 796 5.331902 GCTAGATATCTCGCTAAGCAAGAG 58.668 45.833 19.24 4.54 32.60 2.85
790 798 8.277370 GCTAGATATCTCGCTAAGCAAGAGCT 62.277 46.154 19.24 0.00 41.03 4.09
919 973 2.908940 CCGGCCAGCATCCATTCC 60.909 66.667 2.24 0.00 0.00 3.01
929 983 0.250209 CATCCATTCCCAGCCTCTCG 60.250 60.000 0.00 0.00 0.00 4.04
945 999 2.360801 CTCTCGAGATCCAAGAAGTCCC 59.639 54.545 17.03 0.00 0.00 4.46
946 1000 1.066303 CTCGAGATCCAAGAAGTCCCG 59.934 57.143 6.58 0.00 0.00 5.14
978 1035 2.307309 CGGTGCCGTGTGTGTGTAG 61.307 63.158 1.93 0.00 34.35 2.74
985 1042 2.982470 GCCGTGTGTGTGTAGTAAGTAC 59.018 50.000 0.00 0.00 0.00 2.73
986 1043 3.304928 GCCGTGTGTGTGTAGTAAGTACT 60.305 47.826 0.00 0.00 40.24 2.73
987 1044 4.083324 GCCGTGTGTGTGTAGTAAGTACTA 60.083 45.833 0.00 0.00 37.73 1.82
1071 1128 3.677648 CTGCTGCACAAGTGGGCC 61.678 66.667 2.48 0.00 45.73 5.80
1529 1586 4.549516 GCCCGTCGTCGACTAGCC 62.550 72.222 22.18 5.32 39.71 3.93
1536 1593 2.439883 GTCGACTAGCCCCCGAGT 60.440 66.667 8.70 0.00 32.65 4.18
1539 1596 2.439883 GACTAGCCCCCGAGTCGT 60.440 66.667 12.31 0.00 34.71 4.34
1550 1607 3.307829 CGAGTCGTTCGCATACTGT 57.692 52.632 3.82 0.00 43.22 3.55
1552 1609 2.099621 CGAGTCGTTCGCATACTGTAC 58.900 52.381 3.82 0.00 43.22 2.90
1569 1626 2.623416 TGTACTAGCACAGGATGGATCG 59.377 50.000 0.00 0.00 43.62 3.69
1624 1681 5.912396 GTGTTCTGAATTATGTTCGTTTGCA 59.088 36.000 0.00 0.00 0.00 4.08
1628 1685 9.123709 GTTCTGAATTATGTTCGTTTGCATTTA 57.876 29.630 0.00 0.00 0.00 1.40
1679 1739 2.355837 GCCAGCGTCGTCAGTTCA 60.356 61.111 0.00 0.00 0.00 3.18
1700 1760 7.489435 AGTTCATCATGTTTCGTAGATAGTGTG 59.511 37.037 0.00 0.00 35.04 3.82
1854 1921 1.747325 TTGTTCTGGCTTTGCTGGGC 61.747 55.000 0.00 0.00 0.00 5.36
1922 2065 1.271597 ACCTTCTCCATGTGTTCTGGC 60.272 52.381 0.00 0.00 33.56 4.85
1978 2121 1.066303 GTCTCTGGCTATGACTGACGG 59.934 57.143 0.00 0.00 0.00 4.79
1985 2128 2.614481 GGCTATGACTGACGGGAAAACA 60.614 50.000 0.00 0.00 0.00 2.83
2027 2171 6.711277 TGTCTCCTGCTGTCACTTATTTAAT 58.289 36.000 0.00 0.00 0.00 1.40
2030 2174 6.595326 TCTCCTGCTGTCACTTATTTAATGTG 59.405 38.462 0.00 0.00 0.00 3.21
2035 2179 7.584108 TGCTGTCACTTATTTAATGTGTCAAG 58.416 34.615 0.00 0.00 31.78 3.02
2036 2180 6.524586 GCTGTCACTTATTTAATGTGTCAAGC 59.475 38.462 0.00 0.00 31.78 4.01
2037 2181 6.908825 TGTCACTTATTTAATGTGTCAAGCC 58.091 36.000 0.00 0.00 33.82 4.35
2038 2182 6.714810 TGTCACTTATTTAATGTGTCAAGCCT 59.285 34.615 0.00 0.00 33.82 4.58
2039 2183 7.094805 TGTCACTTATTTAATGTGTCAAGCCTC 60.095 37.037 0.00 0.00 33.82 4.70
2040 2184 6.939730 TCACTTATTTAATGTGTCAAGCCTCA 59.060 34.615 0.00 0.00 33.82 3.86
2041 2185 7.446931 TCACTTATTTAATGTGTCAAGCCTCAA 59.553 33.333 0.00 0.00 33.82 3.02
2042 2186 7.752239 CACTTATTTAATGTGTCAAGCCTCAAG 59.248 37.037 0.00 0.00 0.00 3.02
2060 2204 0.110486 AGCGTCCCAATTCCACTGTT 59.890 50.000 0.00 0.00 0.00 3.16
2109 2253 3.357203 GTCCCCCTCCTTCTGAATTTTC 58.643 50.000 0.00 0.00 0.00 2.29
2138 2282 0.522626 TGATGCGCATTTGGTCACTG 59.477 50.000 26.12 0.00 0.00 3.66
2148 2296 0.179004 TTGGTCACTGCCCGTTTGAT 60.179 50.000 0.00 0.00 0.00 2.57
2150 2298 1.305930 GGTCACTGCCCGTTTGATCC 61.306 60.000 0.00 0.00 0.00 3.36
2166 2314 2.791179 TGATCCCTGATAAAATGCCCCT 59.209 45.455 0.00 0.00 0.00 4.79
2169 2324 2.108250 TCCCTGATAAAATGCCCCTAGC 59.892 50.000 0.00 0.00 44.14 3.42
2218 2373 1.446907 CTGCAGTGGTTCATCAGGTC 58.553 55.000 5.25 0.00 0.00 3.85
2228 2383 0.817654 TCATCAGGTCGAGCGTTCAT 59.182 50.000 9.28 0.00 0.00 2.57
2229 2384 1.202302 TCATCAGGTCGAGCGTTCATC 60.202 52.381 9.28 0.00 0.00 2.92
2230 2385 0.817654 ATCAGGTCGAGCGTTCATCA 59.182 50.000 9.28 0.00 0.00 3.07
2231 2386 0.109272 TCAGGTCGAGCGTTCATCAC 60.109 55.000 9.28 0.00 0.00 3.06
2232 2387 1.078759 CAGGTCGAGCGTTCATCACC 61.079 60.000 9.28 2.13 0.00 4.02
2250 2405 2.598394 TTGCTGCCCAAGAGTGCC 60.598 61.111 0.00 0.00 0.00 5.01
2254 2409 1.377725 CTGCCCAAGAGTGCCGATT 60.378 57.895 0.00 0.00 0.00 3.34
2278 2433 6.053005 TCTGAATCTTTGTTTGACTACCGTT 58.947 36.000 0.00 0.00 0.00 4.44
2298 2453 0.399454 CGATCAGCCCCATCCATCTT 59.601 55.000 0.00 0.00 0.00 2.40
2308 2463 1.645034 CATCCATCTTGTCGCGAAGT 58.355 50.000 12.06 0.00 0.00 3.01
2333 2491 3.790089 TTTCTCTCCAAAACCCTCTCC 57.210 47.619 0.00 0.00 0.00 3.71
2334 2492 1.657804 TCTCTCCAAAACCCTCTCCC 58.342 55.000 0.00 0.00 0.00 4.30
2335 2493 1.152271 TCTCTCCAAAACCCTCTCCCT 59.848 52.381 0.00 0.00 0.00 4.20
2336 2494 1.988846 CTCTCCAAAACCCTCTCCCTT 59.011 52.381 0.00 0.00 0.00 3.95
2337 2495 2.376855 CTCTCCAAAACCCTCTCCCTTT 59.623 50.000 0.00 0.00 0.00 3.11
2338 2496 2.375509 TCTCCAAAACCCTCTCCCTTTC 59.624 50.000 0.00 0.00 0.00 2.62
2339 2497 1.427753 TCCAAAACCCTCTCCCTTTCC 59.572 52.381 0.00 0.00 0.00 3.13
2340 2498 1.429299 CCAAAACCCTCTCCCTTTCCT 59.571 52.381 0.00 0.00 0.00 3.36
2341 2499 2.158310 CCAAAACCCTCTCCCTTTCCTT 60.158 50.000 0.00 0.00 0.00 3.36
2342 2500 3.075432 CCAAAACCCTCTCCCTTTCCTTA 59.925 47.826 0.00 0.00 0.00 2.69
2343 2501 4.448640 CCAAAACCCTCTCCCTTTCCTTAA 60.449 45.833 0.00 0.00 0.00 1.85
2344 2502 5.144832 CAAAACCCTCTCCCTTTCCTTAAA 58.855 41.667 0.00 0.00 0.00 1.52
2345 2503 5.412617 AAACCCTCTCCCTTTCCTTAAAA 57.587 39.130 0.00 0.00 0.00 1.52
2346 2504 5.412617 AACCCTCTCCCTTTCCTTAAAAA 57.587 39.130 0.00 0.00 0.00 1.94
2393 2551 2.671070 CCCTCGGCTTGGTGACAT 59.329 61.111 0.00 0.00 42.32 3.06
2414 2572 1.153329 TGTCGGTGAACCAAAGCGT 60.153 52.632 0.00 0.00 39.44 5.07
2430 2595 2.431942 GTGTTCATCGCCGGACGT 60.432 61.111 5.05 0.00 44.19 4.34
2432 2597 0.526954 GTGTTCATCGCCGGACGTAT 60.527 55.000 5.05 1.69 44.19 3.06
2449 2614 5.006746 GGACGTATCATCCATGACAACTTTC 59.993 44.000 0.00 0.00 40.03 2.62
2455 2620 2.783135 TCCATGACAACTTTCAGCTCC 58.217 47.619 0.00 0.00 0.00 4.70
2469 2634 1.891919 GCTCCTGAAACACACCGCA 60.892 57.895 0.00 0.00 0.00 5.69
2483 2648 0.037326 ACCGCACGTCTCATTCACAT 60.037 50.000 0.00 0.00 0.00 3.21
2524 2689 2.799017 TGCTCAAGATTGACATTGCCT 58.201 42.857 0.00 0.00 32.90 4.75
2529 2694 5.971360 TCAAGATTGACATTGCCTGGGCA 62.971 47.826 10.55 10.55 39.89 5.36
2539 2704 2.657297 GCCTGGGCATTTGACTCAA 58.343 52.632 6.75 0.00 41.49 3.02
2554 2719 5.883685 TGACTCAATCTCATGGCTATTCT 57.116 39.130 0.00 0.00 0.00 2.40
2568 2733 9.499479 TCATGGCTATTCTTTCTTCATATTCTC 57.501 33.333 0.00 0.00 0.00 2.87
2580 2745 2.846206 TCATATTCTCAGCCACCTTGGT 59.154 45.455 0.00 0.00 40.46 3.67
2589 2755 1.747774 CCACCTTGGTTTTGGCCTG 59.252 57.895 3.32 0.00 31.35 4.85
2590 2756 0.758685 CCACCTTGGTTTTGGCCTGA 60.759 55.000 3.32 0.00 31.35 3.86
2591 2757 1.341080 CACCTTGGTTTTGGCCTGAT 58.659 50.000 3.32 0.00 0.00 2.90
2594 2760 1.002315 CCTTGGTTTTGGCCTGATTGG 59.998 52.381 3.32 0.00 39.35 3.16
2630 2796 2.060383 CCTCCTCTCCACGGCATCA 61.060 63.158 0.00 0.00 0.00 3.07
2639 2805 2.746904 CTCCACGGCATCAACACATTTA 59.253 45.455 0.00 0.00 0.00 1.40
2641 2807 2.227626 CCACGGCATCAACACATTTACA 59.772 45.455 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 8.950210 GGAAGACAAATGTGAAAAGATATCTGA 58.050 33.333 5.86 0.00 0.00 3.27
25 26 8.186821 GGGAAGACAAATGTGAAAAGATATCTG 58.813 37.037 5.86 0.00 0.00 2.90
26 27 7.340487 GGGGAAGACAAATGTGAAAAGATATCT 59.660 37.037 0.00 0.00 0.00 1.98
27 28 7.122650 TGGGGAAGACAAATGTGAAAAGATATC 59.877 37.037 0.00 0.00 0.00 1.63
28 29 6.953520 TGGGGAAGACAAATGTGAAAAGATAT 59.046 34.615 0.00 0.00 0.00 1.63
29 30 6.310941 TGGGGAAGACAAATGTGAAAAGATA 58.689 36.000 0.00 0.00 0.00 1.98
30 31 5.147032 TGGGGAAGACAAATGTGAAAAGAT 58.853 37.500 0.00 0.00 0.00 2.40
31 32 4.541705 TGGGGAAGACAAATGTGAAAAGA 58.458 39.130 0.00 0.00 0.00 2.52
32 33 4.935352 TGGGGAAGACAAATGTGAAAAG 57.065 40.909 0.00 0.00 0.00 2.27
33 34 5.454471 CCATTGGGGAAGACAAATGTGAAAA 60.454 40.000 0.00 0.00 40.01 2.29
34 35 4.040217 CCATTGGGGAAGACAAATGTGAAA 59.960 41.667 0.00 0.00 40.01 2.69
35 36 3.577848 CCATTGGGGAAGACAAATGTGAA 59.422 43.478 0.00 0.00 40.01 3.18
36 37 3.164268 CCATTGGGGAAGACAAATGTGA 58.836 45.455 0.00 0.00 40.01 3.58
37 38 2.899256 ACCATTGGGGAAGACAAATGTG 59.101 45.455 7.78 0.00 41.15 3.21
38 39 3.258722 ACCATTGGGGAAGACAAATGT 57.741 42.857 7.78 0.00 41.15 2.71
39 40 5.736951 TTAACCATTGGGGAAGACAAATG 57.263 39.130 7.78 0.00 41.15 2.32
40 41 5.843969 ACTTTAACCATTGGGGAAGACAAAT 59.156 36.000 16.84 0.00 41.15 2.32
41 42 5.212745 ACTTTAACCATTGGGGAAGACAAA 58.787 37.500 16.84 3.57 41.15 2.83
42 43 4.810345 ACTTTAACCATTGGGGAAGACAA 58.190 39.130 16.84 0.00 41.15 3.18
43 44 4.463050 ACTTTAACCATTGGGGAAGACA 57.537 40.909 16.84 0.00 41.15 3.41
44 45 5.184479 GGTAACTTTAACCATTGGGGAAGAC 59.816 44.000 16.84 8.84 41.15 3.01
45 46 5.326900 GGTAACTTTAACCATTGGGGAAGA 58.673 41.667 16.84 0.00 41.15 2.87
46 47 4.157105 CGGTAACTTTAACCATTGGGGAAG 59.843 45.833 7.78 9.95 41.15 3.46
47 48 4.080687 CGGTAACTTTAACCATTGGGGAA 58.919 43.478 7.78 0.00 41.15 3.97
48 49 3.688235 CGGTAACTTTAACCATTGGGGA 58.312 45.455 7.78 0.00 41.15 4.81
49 50 2.164827 GCGGTAACTTTAACCATTGGGG 59.835 50.000 7.78 0.00 44.81 4.96
50 51 2.159490 CGCGGTAACTTTAACCATTGGG 60.159 50.000 7.78 0.00 36.78 4.12
51 52 2.743126 TCGCGGTAACTTTAACCATTGG 59.257 45.455 6.13 0.00 36.78 3.16
52 53 4.142773 ACATCGCGGTAACTTTAACCATTG 60.143 41.667 6.13 0.00 36.78 2.82
53 54 4.004982 ACATCGCGGTAACTTTAACCATT 58.995 39.130 6.13 0.00 36.78 3.16
54 55 3.602483 ACATCGCGGTAACTTTAACCAT 58.398 40.909 6.13 0.00 36.78 3.55
55 56 3.042871 ACATCGCGGTAACTTTAACCA 57.957 42.857 6.13 0.00 36.78 3.67
56 57 4.153256 CAAACATCGCGGTAACTTTAACC 58.847 43.478 6.13 0.00 0.00 2.85
57 58 4.775664 ACAAACATCGCGGTAACTTTAAC 58.224 39.130 6.13 0.00 0.00 2.01
58 59 6.591062 AGATACAAACATCGCGGTAACTTTAA 59.409 34.615 6.13 0.00 0.00 1.52
59 60 6.101332 AGATACAAACATCGCGGTAACTTTA 58.899 36.000 6.13 0.00 0.00 1.85
60 61 4.933400 AGATACAAACATCGCGGTAACTTT 59.067 37.500 6.13 0.00 0.00 2.66
61 62 4.501071 AGATACAAACATCGCGGTAACTT 58.499 39.130 6.13 0.00 0.00 2.66
62 63 4.119442 AGATACAAACATCGCGGTAACT 57.881 40.909 6.13 0.30 0.00 2.24
63 64 5.954434 TTAGATACAAACATCGCGGTAAC 57.046 39.130 6.13 0.00 0.00 2.50
64 65 7.542534 AATTTAGATACAAACATCGCGGTAA 57.457 32.000 6.13 0.00 0.00 2.85
65 66 8.821147 ATAATTTAGATACAAACATCGCGGTA 57.179 30.769 6.13 0.00 0.00 4.02
66 67 7.439955 TGATAATTTAGATACAAACATCGCGGT 59.560 33.333 6.13 0.00 0.00 5.68
67 68 7.792925 TGATAATTTAGATACAAACATCGCGG 58.207 34.615 6.13 0.00 0.00 6.46
68 69 7.952101 CCTGATAATTTAGATACAAACATCGCG 59.048 37.037 0.00 0.00 0.00 5.87
69 70 8.774586 ACCTGATAATTTAGATACAAACATCGC 58.225 33.333 0.00 0.00 0.00 4.58
76 77 9.944376 GCCATAGACCTGATAATTTAGATACAA 57.056 33.333 0.00 0.00 0.00 2.41
77 78 8.251026 CGCCATAGACCTGATAATTTAGATACA 58.749 37.037 0.00 0.00 0.00 2.29
78 79 8.251721 ACGCCATAGACCTGATAATTTAGATAC 58.748 37.037 0.00 0.00 0.00 2.24
79 80 8.251026 CACGCCATAGACCTGATAATTTAGATA 58.749 37.037 0.00 0.00 0.00 1.98
80 81 7.039011 TCACGCCATAGACCTGATAATTTAGAT 60.039 37.037 0.00 0.00 0.00 1.98
81 82 6.266786 TCACGCCATAGACCTGATAATTTAGA 59.733 38.462 0.00 0.00 0.00 2.10
82 83 6.455647 TCACGCCATAGACCTGATAATTTAG 58.544 40.000 0.00 0.00 0.00 1.85
83 84 6.413783 TCACGCCATAGACCTGATAATTTA 57.586 37.500 0.00 0.00 0.00 1.40
84 85 5.290493 TCACGCCATAGACCTGATAATTT 57.710 39.130 0.00 0.00 0.00 1.82
85 86 4.955811 TCACGCCATAGACCTGATAATT 57.044 40.909 0.00 0.00 0.00 1.40
86 87 4.955811 TTCACGCCATAGACCTGATAAT 57.044 40.909 0.00 0.00 0.00 1.28
87 88 4.100963 ACATTCACGCCATAGACCTGATAA 59.899 41.667 0.00 0.00 0.00 1.75
88 89 3.641436 ACATTCACGCCATAGACCTGATA 59.359 43.478 0.00 0.00 0.00 2.15
89 90 2.435805 ACATTCACGCCATAGACCTGAT 59.564 45.455 0.00 0.00 0.00 2.90
90 91 1.831106 ACATTCACGCCATAGACCTGA 59.169 47.619 0.00 0.00 0.00 3.86
91 92 2.315925 ACATTCACGCCATAGACCTG 57.684 50.000 0.00 0.00 0.00 4.00
92 93 4.380531 CATAACATTCACGCCATAGACCT 58.619 43.478 0.00 0.00 0.00 3.85
93 94 3.498397 CCATAACATTCACGCCATAGACC 59.502 47.826 0.00 0.00 0.00 3.85
94 95 4.024893 CACCATAACATTCACGCCATAGAC 60.025 45.833 0.00 0.00 0.00 2.59
95 96 4.126437 CACCATAACATTCACGCCATAGA 58.874 43.478 0.00 0.00 0.00 1.98
96 97 3.303990 GCACCATAACATTCACGCCATAG 60.304 47.826 0.00 0.00 0.00 2.23
97 98 2.616376 GCACCATAACATTCACGCCATA 59.384 45.455 0.00 0.00 0.00 2.74
98 99 1.405105 GCACCATAACATTCACGCCAT 59.595 47.619 0.00 0.00 0.00 4.40
99 100 0.808125 GCACCATAACATTCACGCCA 59.192 50.000 0.00 0.00 0.00 5.69
100 101 1.094785 AGCACCATAACATTCACGCC 58.905 50.000 0.00 0.00 0.00 5.68
101 102 4.552166 AATAGCACCATAACATTCACGC 57.448 40.909 0.00 0.00 0.00 5.34
102 103 7.010697 TGTAAATAGCACCATAACATTCACG 57.989 36.000 0.00 0.00 0.00 4.35
103 104 8.208718 TCTGTAAATAGCACCATAACATTCAC 57.791 34.615 0.00 0.00 0.00 3.18
104 105 8.800370 TTCTGTAAATAGCACCATAACATTCA 57.200 30.769 0.00 0.00 0.00 2.57
109 110 9.946165 GGTAATTTCTGTAAATAGCACCATAAC 57.054 33.333 0.00 0.00 34.12 1.89
110 111 8.832521 CGGTAATTTCTGTAAATAGCACCATAA 58.167 33.333 0.00 0.00 34.12 1.90
111 112 8.205512 TCGGTAATTTCTGTAAATAGCACCATA 58.794 33.333 0.00 0.00 34.12 2.74
112 113 7.051623 TCGGTAATTTCTGTAAATAGCACCAT 58.948 34.615 0.00 0.00 34.12 3.55
113 114 6.408035 TCGGTAATTTCTGTAAATAGCACCA 58.592 36.000 0.00 0.00 34.12 4.17
114 115 6.018180 CCTCGGTAATTTCTGTAAATAGCACC 60.018 42.308 0.00 0.00 34.12 5.01
115 116 6.018180 CCCTCGGTAATTTCTGTAAATAGCAC 60.018 42.308 0.00 0.00 34.12 4.40
116 117 6.053005 CCCTCGGTAATTTCTGTAAATAGCA 58.947 40.000 0.00 0.00 34.12 3.49
117 118 6.202379 GTCCCTCGGTAATTTCTGTAAATAGC 59.798 42.308 0.00 0.00 34.12 2.97
118 119 6.420008 CGTCCCTCGGTAATTTCTGTAAATAG 59.580 42.308 0.00 0.00 33.90 1.73
119 120 6.275335 CGTCCCTCGGTAATTTCTGTAAATA 58.725 40.000 0.00 0.00 33.90 1.40
120 121 5.114081 CGTCCCTCGGTAATTTCTGTAAAT 58.886 41.667 0.00 0.00 34.89 1.40
121 122 4.497300 CGTCCCTCGGTAATTTCTGTAAA 58.503 43.478 0.00 0.00 35.71 2.01
122 123 4.114058 CGTCCCTCGGTAATTTCTGTAA 57.886 45.455 0.00 0.00 35.71 2.41
123 124 3.788333 CGTCCCTCGGTAATTTCTGTA 57.212 47.619 0.00 0.00 35.71 2.74
124 125 2.667473 CGTCCCTCGGTAATTTCTGT 57.333 50.000 0.00 0.00 35.71 3.41
135 136 0.533308 TTTGTTGAACCCGTCCCTCG 60.533 55.000 0.00 0.00 39.52 4.63
136 137 1.905637 ATTTGTTGAACCCGTCCCTC 58.094 50.000 0.00 0.00 0.00 4.30
137 138 2.375014 AATTTGTTGAACCCGTCCCT 57.625 45.000 0.00 0.00 0.00 4.20
138 139 4.794278 ATAAATTTGTTGAACCCGTCCC 57.206 40.909 0.00 0.00 0.00 4.46
139 140 5.165676 GGAATAAATTTGTTGAACCCGTCC 58.834 41.667 4.76 0.00 0.00 4.79
140 141 5.165676 GGGAATAAATTTGTTGAACCCGTC 58.834 41.667 4.76 0.00 0.00 4.79
141 142 4.589374 TGGGAATAAATTTGTTGAACCCGT 59.411 37.500 14.37 0.00 37.81 5.28
142 143 5.140747 TGGGAATAAATTTGTTGAACCCG 57.859 39.130 14.37 0.00 37.81 5.28
143 144 7.164803 TCATTGGGAATAAATTTGTTGAACCC 58.835 34.615 13.13 13.13 35.82 4.11
144 145 8.791327 ATCATTGGGAATAAATTTGTTGAACC 57.209 30.769 4.76 5.51 0.00 3.62
145 146 9.434420 TGATCATTGGGAATAAATTTGTTGAAC 57.566 29.630 4.76 0.00 0.00 3.18
154 155 9.265862 TGGTAACTTTGATCATTGGGAATAAAT 57.734 29.630 0.00 0.00 37.61 1.40
155 156 8.527810 GTGGTAACTTTGATCATTGGGAATAAA 58.472 33.333 0.00 0.00 37.61 1.40
156 157 7.148154 CGTGGTAACTTTGATCATTGGGAATAA 60.148 37.037 0.00 0.00 37.61 1.40
157 158 6.317642 CGTGGTAACTTTGATCATTGGGAATA 59.682 38.462 0.00 0.00 37.61 1.75
158 159 5.125417 CGTGGTAACTTTGATCATTGGGAAT 59.875 40.000 0.00 0.00 37.61 3.01
159 160 4.457603 CGTGGTAACTTTGATCATTGGGAA 59.542 41.667 0.00 0.00 37.61 3.97
160 161 4.006989 CGTGGTAACTTTGATCATTGGGA 58.993 43.478 0.00 0.00 37.61 4.37
161 162 4.006989 TCGTGGTAACTTTGATCATTGGG 58.993 43.478 0.00 0.00 37.61 4.12
162 163 5.572211 CATCGTGGTAACTTTGATCATTGG 58.428 41.667 0.00 0.00 37.61 3.16
163 164 5.030295 GCATCGTGGTAACTTTGATCATTG 58.970 41.667 0.00 0.00 37.61 2.82
164 165 4.943705 AGCATCGTGGTAACTTTGATCATT 59.056 37.500 0.00 0.00 37.61 2.57
165 166 4.517285 AGCATCGTGGTAACTTTGATCAT 58.483 39.130 0.00 0.00 37.61 2.45
166 167 3.937814 AGCATCGTGGTAACTTTGATCA 58.062 40.909 0.00 0.00 37.61 2.92
167 168 4.391830 TCAAGCATCGTGGTAACTTTGATC 59.608 41.667 0.00 0.00 37.61 2.92
168 169 4.323417 TCAAGCATCGTGGTAACTTTGAT 58.677 39.130 0.00 0.00 37.61 2.57
169 170 3.734463 TCAAGCATCGTGGTAACTTTGA 58.266 40.909 0.00 0.00 37.61 2.69
170 171 4.481930 TTCAAGCATCGTGGTAACTTTG 57.518 40.909 0.00 0.00 37.61 2.77
171 172 4.336993 TGTTTCAAGCATCGTGGTAACTTT 59.663 37.500 0.00 0.00 37.61 2.66
172 173 3.880490 TGTTTCAAGCATCGTGGTAACTT 59.120 39.130 0.00 0.00 37.61 2.66
173 174 3.472652 TGTTTCAAGCATCGTGGTAACT 58.527 40.909 0.00 0.00 37.61 2.24
174 175 3.889196 TGTTTCAAGCATCGTGGTAAC 57.111 42.857 0.00 0.00 0.00 2.50
175 176 4.902443 TTTGTTTCAAGCATCGTGGTAA 57.098 36.364 0.00 0.00 0.00 2.85
176 177 4.902443 TTTTGTTTCAAGCATCGTGGTA 57.098 36.364 0.00 0.00 0.00 3.25
177 178 3.791973 TTTTGTTTCAAGCATCGTGGT 57.208 38.095 0.00 0.00 0.00 4.16
178 179 4.111916 ACTTTTTGTTTCAAGCATCGTGG 58.888 39.130 0.00 0.00 0.00 4.94
179 180 5.701029 AACTTTTTGTTTCAAGCATCGTG 57.299 34.783 0.00 0.00 34.84 4.35
191 192 9.816354 ATATGTTAGCACTGAAAACTTTTTGTT 57.184 25.926 0.00 0.00 41.29 2.83
192 193 9.816354 AATATGTTAGCACTGAAAACTTTTTGT 57.184 25.926 0.00 0.00 0.00 2.83
198 199 8.244113 GCCTTTAATATGTTAGCACTGAAAACT 58.756 33.333 0.00 0.00 0.00 2.66
199 200 8.026607 TGCCTTTAATATGTTAGCACTGAAAAC 58.973 33.333 0.00 0.00 0.00 2.43
200 201 8.116651 TGCCTTTAATATGTTAGCACTGAAAA 57.883 30.769 0.00 0.00 0.00 2.29
201 202 7.695480 TGCCTTTAATATGTTAGCACTGAAA 57.305 32.000 0.00 0.00 0.00 2.69
202 203 7.695480 TTGCCTTTAATATGTTAGCACTGAA 57.305 32.000 0.00 0.00 0.00 3.02
203 204 7.695480 TTTGCCTTTAATATGTTAGCACTGA 57.305 32.000 0.00 0.00 0.00 3.41
204 205 8.647226 GTTTTTGCCTTTAATATGTTAGCACTG 58.353 33.333 0.00 0.00 0.00 3.66
205 206 8.364142 TGTTTTTGCCTTTAATATGTTAGCACT 58.636 29.630 0.00 0.00 0.00 4.40
206 207 8.527567 TGTTTTTGCCTTTAATATGTTAGCAC 57.472 30.769 0.00 0.00 0.00 4.40
207 208 9.149225 CATGTTTTTGCCTTTAATATGTTAGCA 57.851 29.630 0.00 0.00 0.00 3.49
208 209 9.150348 ACATGTTTTTGCCTTTAATATGTTAGC 57.850 29.630 0.00 0.00 32.09 3.09
211 212 9.553064 TTGACATGTTTTTGCCTTTAATATGTT 57.447 25.926 0.00 0.00 34.92 2.71
212 213 9.553064 TTTGACATGTTTTTGCCTTTAATATGT 57.447 25.926 0.00 0.00 36.65 2.29
237 238 7.597288 ACAAGCTAAGGGAAATACTGTTTTT 57.403 32.000 0.00 0.00 0.00 1.94
238 239 7.521585 CGAACAAGCTAAGGGAAATACTGTTTT 60.522 37.037 0.00 0.00 0.00 2.43
239 240 6.072673 CGAACAAGCTAAGGGAAATACTGTTT 60.073 38.462 0.00 0.00 0.00 2.83
240 241 5.411669 CGAACAAGCTAAGGGAAATACTGTT 59.588 40.000 0.00 0.00 0.00 3.16
241 242 4.935808 CGAACAAGCTAAGGGAAATACTGT 59.064 41.667 0.00 0.00 0.00 3.55
242 243 5.063564 GTCGAACAAGCTAAGGGAAATACTG 59.936 44.000 0.00 0.00 0.00 2.74
243 244 5.176592 GTCGAACAAGCTAAGGGAAATACT 58.823 41.667 0.00 0.00 0.00 2.12
244 245 4.933400 TGTCGAACAAGCTAAGGGAAATAC 59.067 41.667 0.00 0.00 0.00 1.89
245 246 5.155278 TGTCGAACAAGCTAAGGGAAATA 57.845 39.130 0.00 0.00 0.00 1.40
246 247 4.015872 TGTCGAACAAGCTAAGGGAAAT 57.984 40.909 0.00 0.00 0.00 2.17
247 248 3.478857 TGTCGAACAAGCTAAGGGAAA 57.521 42.857 0.00 0.00 0.00 3.13
248 249 3.478857 TTGTCGAACAAGCTAAGGGAA 57.521 42.857 0.00 0.00 32.34 3.97
249 250 3.007506 TCATTGTCGAACAAGCTAAGGGA 59.992 43.478 0.00 0.00 41.94 4.20
250 251 3.334691 TCATTGTCGAACAAGCTAAGGG 58.665 45.455 0.00 0.00 41.94 3.95
251 252 3.997021 ACTCATTGTCGAACAAGCTAAGG 59.003 43.478 0.00 0.00 41.94 2.69
252 253 4.449068 ACACTCATTGTCGAACAAGCTAAG 59.551 41.667 0.00 0.00 41.94 2.18
253 254 4.377021 ACACTCATTGTCGAACAAGCTAA 58.623 39.130 0.00 0.00 41.94 3.09
254 255 3.987868 GACACTCATTGTCGAACAAGCTA 59.012 43.478 0.00 0.00 45.33 3.32
255 256 2.802816 GACACTCATTGTCGAACAAGCT 59.197 45.455 0.00 0.00 45.33 3.74
256 257 3.174799 GACACTCATTGTCGAACAAGC 57.825 47.619 0.00 0.00 45.33 4.01
265 266 3.840666 ACCTCACCTATGACACTCATTGT 59.159 43.478 0.00 0.00 43.10 2.71
266 267 4.186926 CACCTCACCTATGACACTCATTG 58.813 47.826 0.00 0.00 38.26 2.82
267 268 3.198635 CCACCTCACCTATGACACTCATT 59.801 47.826 0.00 0.00 38.26 2.57
268 269 2.768527 CCACCTCACCTATGACACTCAT 59.231 50.000 0.00 0.00 40.72 2.90
269 270 2.179427 CCACCTCACCTATGACACTCA 58.821 52.381 0.00 0.00 0.00 3.41
270 271 2.180276 ACCACCTCACCTATGACACTC 58.820 52.381 0.00 0.00 0.00 3.51
271 272 2.327325 ACCACCTCACCTATGACACT 57.673 50.000 0.00 0.00 0.00 3.55
272 273 3.679083 GCTAACCACCTCACCTATGACAC 60.679 52.174 0.00 0.00 0.00 3.67
273 274 2.500098 GCTAACCACCTCACCTATGACA 59.500 50.000 0.00 0.00 0.00 3.58
274 275 2.766828 AGCTAACCACCTCACCTATGAC 59.233 50.000 0.00 0.00 0.00 3.06
275 276 3.116096 AGCTAACCACCTCACCTATGA 57.884 47.619 0.00 0.00 0.00 2.15
276 277 3.432326 GGAAGCTAACCACCTCACCTATG 60.432 52.174 5.17 0.00 0.00 2.23
277 278 2.772515 GGAAGCTAACCACCTCACCTAT 59.227 50.000 5.17 0.00 0.00 2.57
278 279 2.185387 GGAAGCTAACCACCTCACCTA 58.815 52.381 5.17 0.00 0.00 3.08
279 280 0.984995 GGAAGCTAACCACCTCACCT 59.015 55.000 5.17 0.00 0.00 4.00
280 281 0.984995 AGGAAGCTAACCACCTCACC 59.015 55.000 11.59 0.00 0.00 4.02
281 282 2.814336 CAAAGGAAGCTAACCACCTCAC 59.186 50.000 11.59 0.00 31.89 3.51
282 283 2.441750 ACAAAGGAAGCTAACCACCTCA 59.558 45.455 11.59 0.00 31.89 3.86
283 284 3.141767 ACAAAGGAAGCTAACCACCTC 57.858 47.619 11.59 0.00 31.89 3.85
284 285 3.117663 TCAACAAAGGAAGCTAACCACCT 60.118 43.478 11.59 2.38 0.00 4.00
285 286 3.219281 TCAACAAAGGAAGCTAACCACC 58.781 45.455 11.59 0.25 0.00 4.61
286 287 5.453567 AATCAACAAAGGAAGCTAACCAC 57.546 39.130 11.59 0.00 0.00 4.16
287 288 5.475564 GGTAATCAACAAAGGAAGCTAACCA 59.524 40.000 11.59 0.00 0.00 3.67
288 289 5.710567 AGGTAATCAACAAAGGAAGCTAACC 59.289 40.000 2.08 2.08 0.00 2.85
289 290 6.206829 ACAGGTAATCAACAAAGGAAGCTAAC 59.793 38.462 0.00 0.00 0.00 2.34
290 291 6.303839 ACAGGTAATCAACAAAGGAAGCTAA 58.696 36.000 0.00 0.00 0.00 3.09
291 292 5.876357 ACAGGTAATCAACAAAGGAAGCTA 58.124 37.500 0.00 0.00 0.00 3.32
292 293 4.729868 ACAGGTAATCAACAAAGGAAGCT 58.270 39.130 0.00 0.00 0.00 3.74
293 294 5.938125 TCTACAGGTAATCAACAAAGGAAGC 59.062 40.000 0.00 0.00 0.00 3.86
294 295 6.371825 GGTCTACAGGTAATCAACAAAGGAAG 59.628 42.308 0.00 0.00 0.00 3.46
295 296 6.183361 TGGTCTACAGGTAATCAACAAAGGAA 60.183 38.462 0.00 0.00 0.00 3.36
296 297 5.308497 TGGTCTACAGGTAATCAACAAAGGA 59.692 40.000 0.00 0.00 0.00 3.36
297 298 5.556915 TGGTCTACAGGTAATCAACAAAGG 58.443 41.667 0.00 0.00 0.00 3.11
298 299 7.504924 TTTGGTCTACAGGTAATCAACAAAG 57.495 36.000 0.00 0.00 0.00 2.77
299 300 9.747898 ATATTTGGTCTACAGGTAATCAACAAA 57.252 29.630 0.00 0.00 0.00 2.83
300 301 9.391006 GATATTTGGTCTACAGGTAATCAACAA 57.609 33.333 0.00 0.00 0.00 2.83
301 302 8.544622 TGATATTTGGTCTACAGGTAATCAACA 58.455 33.333 0.00 0.00 0.00 3.33
302 303 8.958119 TGATATTTGGTCTACAGGTAATCAAC 57.042 34.615 0.00 0.00 0.00 3.18
303 304 9.967451 TTTGATATTTGGTCTACAGGTAATCAA 57.033 29.630 0.00 0.00 30.67 2.57
306 307 9.574516 GGATTTGATATTTGGTCTACAGGTAAT 57.425 33.333 0.00 0.00 0.00 1.89
307 308 8.778059 AGGATTTGATATTTGGTCTACAGGTAA 58.222 33.333 0.00 0.00 0.00 2.85
308 309 8.331931 AGGATTTGATATTTGGTCTACAGGTA 57.668 34.615 0.00 0.00 0.00 3.08
309 310 7.213178 AGGATTTGATATTTGGTCTACAGGT 57.787 36.000 0.00 0.00 0.00 4.00
310 311 8.432805 ACTAGGATTTGATATTTGGTCTACAGG 58.567 37.037 0.00 0.00 0.00 4.00
311 312 9.482627 GACTAGGATTTGATATTTGGTCTACAG 57.517 37.037 0.00 0.00 0.00 2.74
312 313 8.141909 CGACTAGGATTTGATATTTGGTCTACA 58.858 37.037 0.00 0.00 0.00 2.74
313 314 8.358148 TCGACTAGGATTTGATATTTGGTCTAC 58.642 37.037 0.00 0.00 0.00 2.59
314 315 8.473358 TCGACTAGGATTTGATATTTGGTCTA 57.527 34.615 0.00 0.00 0.00 2.59
315 316 7.361457 TCGACTAGGATTTGATATTTGGTCT 57.639 36.000 0.00 0.00 0.00 3.85
316 317 7.062371 CGATCGACTAGGATTTGATATTTGGTC 59.938 40.741 10.26 0.00 0.00 4.02
317 318 6.868864 CGATCGACTAGGATTTGATATTTGGT 59.131 38.462 10.26 0.00 0.00 3.67
318 319 6.311445 CCGATCGACTAGGATTTGATATTTGG 59.689 42.308 18.66 0.00 0.00 3.28
319 320 6.311445 CCCGATCGACTAGGATTTGATATTTG 59.689 42.308 18.66 0.00 0.00 2.32
320 321 6.210784 TCCCGATCGACTAGGATTTGATATTT 59.789 38.462 18.66 0.00 0.00 1.40
321 322 5.715279 TCCCGATCGACTAGGATTTGATATT 59.285 40.000 18.66 0.00 0.00 1.28
322 323 5.262009 TCCCGATCGACTAGGATTTGATAT 58.738 41.667 18.66 0.00 0.00 1.63
323 324 4.659115 TCCCGATCGACTAGGATTTGATA 58.341 43.478 18.66 0.00 0.00 2.15
324 325 3.497332 TCCCGATCGACTAGGATTTGAT 58.503 45.455 18.66 0.00 0.00 2.57
325 326 2.885266 CTCCCGATCGACTAGGATTTGA 59.115 50.000 18.66 0.00 0.00 2.69
326 327 2.623889 ACTCCCGATCGACTAGGATTTG 59.376 50.000 18.66 5.59 0.00 2.32
327 328 2.885894 GACTCCCGATCGACTAGGATTT 59.114 50.000 18.66 4.52 0.00 2.17
328 329 2.506444 GACTCCCGATCGACTAGGATT 58.494 52.381 18.66 8.69 0.00 3.01
329 330 1.608542 CGACTCCCGATCGACTAGGAT 60.609 57.143 18.66 4.93 42.25 3.24
330 331 0.249784 CGACTCCCGATCGACTAGGA 60.250 60.000 18.66 13.51 42.25 2.94
331 332 0.532417 ACGACTCCCGATCGACTAGG 60.532 60.000 18.66 9.39 42.25 3.02
332 333 0.582482 CACGACTCCCGATCGACTAG 59.418 60.000 18.66 12.76 42.25 2.57
333 334 1.434622 GCACGACTCCCGATCGACTA 61.435 60.000 18.66 0.00 42.25 2.59
334 335 2.762234 GCACGACTCCCGATCGACT 61.762 63.158 18.66 0.00 42.25 4.18
335 336 2.278013 GCACGACTCCCGATCGAC 60.278 66.667 18.66 1.66 42.25 4.20
336 337 3.872728 CGCACGACTCCCGATCGA 61.873 66.667 18.66 0.00 42.25 3.59
337 338 4.907034 CCGCACGACTCCCGATCG 62.907 72.222 8.51 8.51 45.17 3.69
338 339 4.570663 CCCGCACGACTCCCGATC 62.571 72.222 0.00 0.00 41.76 3.69
341 342 4.367023 TTTCCCGCACGACTCCCG 62.367 66.667 0.00 0.00 45.44 5.14
342 343 2.434359 CTTTCCCGCACGACTCCC 60.434 66.667 0.00 0.00 0.00 4.30
343 344 2.434359 CCTTTCCCGCACGACTCC 60.434 66.667 0.00 0.00 0.00 3.85
344 345 0.601841 TTTCCTTTCCCGCACGACTC 60.602 55.000 0.00 0.00 0.00 3.36
345 346 0.036306 ATTTCCTTTCCCGCACGACT 59.964 50.000 0.00 0.00 0.00 4.18
346 347 1.664151 CTATTTCCTTTCCCGCACGAC 59.336 52.381 0.00 0.00 0.00 4.34
347 348 1.551430 TCTATTTCCTTTCCCGCACGA 59.449 47.619 0.00 0.00 0.00 4.35
348 349 2.018542 TCTATTTCCTTTCCCGCACG 57.981 50.000 0.00 0.00 0.00 5.34
349 350 2.544267 CGATCTATTTCCTTTCCCGCAC 59.456 50.000 0.00 0.00 0.00 5.34
350 351 2.484770 CCGATCTATTTCCTTTCCCGCA 60.485 50.000 0.00 0.00 0.00 5.69
351 352 2.143925 CCGATCTATTTCCTTTCCCGC 58.856 52.381 0.00 0.00 0.00 6.13
352 353 2.367567 TCCCGATCTATTTCCTTTCCCG 59.632 50.000 0.00 0.00 0.00 5.14
353 354 3.244596 CCTCCCGATCTATTTCCTTTCCC 60.245 52.174 0.00 0.00 0.00 3.97
354 355 3.646637 TCCTCCCGATCTATTTCCTTTCC 59.353 47.826 0.00 0.00 0.00 3.13
355 356 4.957684 TCCTCCCGATCTATTTCCTTTC 57.042 45.455 0.00 0.00 0.00 2.62
356 357 5.191921 AGTTTCCTCCCGATCTATTTCCTTT 59.808 40.000 0.00 0.00 0.00 3.11
357 358 4.722279 AGTTTCCTCCCGATCTATTTCCTT 59.278 41.667 0.00 0.00 0.00 3.36
358 359 4.101741 CAGTTTCCTCCCGATCTATTTCCT 59.898 45.833 0.00 0.00 0.00 3.36
359 360 4.101119 TCAGTTTCCTCCCGATCTATTTCC 59.899 45.833 0.00 0.00 0.00 3.13
360 361 5.051153 GTCAGTTTCCTCCCGATCTATTTC 58.949 45.833 0.00 0.00 0.00 2.17
361 362 4.441634 CGTCAGTTTCCTCCCGATCTATTT 60.442 45.833 0.00 0.00 0.00 1.40
362 363 3.068307 CGTCAGTTTCCTCCCGATCTATT 59.932 47.826 0.00 0.00 0.00 1.73
363 364 2.623889 CGTCAGTTTCCTCCCGATCTAT 59.376 50.000 0.00 0.00 0.00 1.98
364 365 2.022195 CGTCAGTTTCCTCCCGATCTA 58.978 52.381 0.00 0.00 0.00 1.98
365 366 0.818296 CGTCAGTTTCCTCCCGATCT 59.182 55.000 0.00 0.00 0.00 2.75
366 367 0.179108 CCGTCAGTTTCCTCCCGATC 60.179 60.000 0.00 0.00 0.00 3.69
367 368 1.898154 CCGTCAGTTTCCTCCCGAT 59.102 57.895 0.00 0.00 0.00 4.18
368 369 2.939261 GCCGTCAGTTTCCTCCCGA 61.939 63.158 0.00 0.00 0.00 5.14
369 370 2.434359 GCCGTCAGTTTCCTCCCG 60.434 66.667 0.00 0.00 0.00 5.14
370 371 2.434359 CGCCGTCAGTTTCCTCCC 60.434 66.667 0.00 0.00 0.00 4.30
371 372 3.119096 GCGCCGTCAGTTTCCTCC 61.119 66.667 0.00 0.00 0.00 4.30
372 373 2.048127 AGCGCCGTCAGTTTCCTC 60.048 61.111 2.29 0.00 0.00 3.71
373 374 2.357517 CAGCGCCGTCAGTTTCCT 60.358 61.111 2.29 0.00 0.00 3.36
374 375 3.423154 CCAGCGCCGTCAGTTTCC 61.423 66.667 2.29 0.00 0.00 3.13
375 376 1.741770 ATCCAGCGCCGTCAGTTTC 60.742 57.895 2.29 0.00 0.00 2.78
376 377 2.034879 CATCCAGCGCCGTCAGTTT 61.035 57.895 2.29 0.00 0.00 2.66
377 378 2.434884 CATCCAGCGCCGTCAGTT 60.435 61.111 2.29 0.00 0.00 3.16
387 388 1.230635 AACTGTCACACGCATCCAGC 61.231 55.000 0.00 0.00 40.87 4.85
388 389 1.195448 GAAACTGTCACACGCATCCAG 59.805 52.381 0.00 0.00 0.00 3.86
389 390 1.225855 GAAACTGTCACACGCATCCA 58.774 50.000 0.00 0.00 0.00 3.41
390 391 0.163788 CGAAACTGTCACACGCATCC 59.836 55.000 0.00 0.00 0.00 3.51
391 392 0.451135 GCGAAACTGTCACACGCATC 60.451 55.000 5.69 0.00 46.75 3.91
392 393 1.569493 GCGAAACTGTCACACGCAT 59.431 52.632 5.69 0.00 46.75 4.73
393 394 3.010767 GCGAAACTGTCACACGCA 58.989 55.556 5.69 0.00 46.75 5.24
395 396 1.526887 AGATTGCGAAACTGTCACACG 59.473 47.619 0.00 0.00 0.00 4.49
396 397 2.287915 ACAGATTGCGAAACTGTCACAC 59.712 45.455 10.22 0.00 40.19 3.82
397 398 2.560504 ACAGATTGCGAAACTGTCACA 58.439 42.857 10.22 0.00 40.19 3.58
401 402 2.287915 GTGTGACAGATTGCGAAACTGT 59.712 45.455 14.36 14.36 45.62 3.55
402 403 2.660094 CGTGTGACAGATTGCGAAACTG 60.660 50.000 9.16 9.16 37.62 3.16
403 404 1.526887 CGTGTGACAGATTGCGAAACT 59.473 47.619 0.00 0.00 0.00 2.66
404 405 1.398451 CCGTGTGACAGATTGCGAAAC 60.398 52.381 0.00 0.00 0.00 2.78
405 406 0.865111 CCGTGTGACAGATTGCGAAA 59.135 50.000 0.00 0.00 0.00 3.46
406 407 0.249699 ACCGTGTGACAGATTGCGAA 60.250 50.000 0.00 0.00 0.00 4.70
407 408 0.249699 AACCGTGTGACAGATTGCGA 60.250 50.000 0.00 0.00 0.00 5.10
408 409 0.110688 CAACCGTGTGACAGATTGCG 60.111 55.000 0.00 0.00 0.00 4.85
409 410 0.385974 GCAACCGTGTGACAGATTGC 60.386 55.000 11.16 11.16 36.07 3.56
410 411 0.238289 GGCAACCGTGTGACAGATTG 59.762 55.000 0.00 0.00 0.00 2.67
411 412 0.179032 TGGCAACCGTGTGACAGATT 60.179 50.000 0.00 0.00 29.08 2.40
412 413 0.036732 ATGGCAACCGTGTGACAGAT 59.963 50.000 0.00 0.00 40.74 2.90
413 414 0.682292 TATGGCAACCGTGTGACAGA 59.318 50.000 0.00 0.00 40.74 3.41
414 415 1.737838 ATATGGCAACCGTGTGACAG 58.262 50.000 0.00 0.00 40.74 3.51
415 416 2.028020 TGTATATGGCAACCGTGTGACA 60.028 45.455 0.00 0.00 41.94 3.58
416 417 2.623535 TGTATATGGCAACCGTGTGAC 58.376 47.619 0.00 0.00 0.00 3.67
417 418 3.552132 ATGTATATGGCAACCGTGTGA 57.448 42.857 0.00 0.00 0.00 3.58
418 419 5.106712 GGAATATGTATATGGCAACCGTGTG 60.107 44.000 0.00 0.00 0.00 3.82
419 420 5.001232 GGAATATGTATATGGCAACCGTGT 58.999 41.667 0.00 0.00 0.00 4.49
420 421 4.092821 CGGAATATGTATATGGCAACCGTG 59.907 45.833 0.00 0.00 33.44 4.94
421 422 4.250464 CGGAATATGTATATGGCAACCGT 58.750 43.478 0.00 0.00 33.44 4.83
422 423 4.250464 ACGGAATATGTATATGGCAACCG 58.750 43.478 0.00 0.00 41.85 4.44
423 424 7.675962 TTAACGGAATATGTATATGGCAACC 57.324 36.000 0.00 0.00 0.00 3.77
437 438 9.275398 ACTGCCGATTATTTATTTAACGGAATA 57.725 29.630 0.00 0.00 41.09 1.75
438 439 8.161699 ACTGCCGATTATTTATTTAACGGAAT 57.838 30.769 0.00 0.00 41.09 3.01
439 440 7.556733 ACTGCCGATTATTTATTTAACGGAA 57.443 32.000 0.00 0.00 41.09 4.30
440 441 7.280428 TCAACTGCCGATTATTTATTTAACGGA 59.720 33.333 0.00 0.00 41.09 4.69
441 442 7.375017 GTCAACTGCCGATTATTTATTTAACGG 59.625 37.037 0.00 0.00 41.44 4.44
442 443 8.120465 AGTCAACTGCCGATTATTTATTTAACG 58.880 33.333 0.00 0.00 0.00 3.18
443 444 9.434559 GAGTCAACTGCCGATTATTTATTTAAC 57.565 33.333 0.00 0.00 0.00 2.01
444 445 9.391006 AGAGTCAACTGCCGATTATTTATTTAA 57.609 29.630 0.00 0.00 0.00 1.52
445 446 8.958119 AGAGTCAACTGCCGATTATTTATTTA 57.042 30.769 0.00 0.00 0.00 1.40
446 447 7.865706 AGAGTCAACTGCCGATTATTTATTT 57.134 32.000 0.00 0.00 0.00 1.40
447 448 7.865706 AAGAGTCAACTGCCGATTATTTATT 57.134 32.000 0.00 0.00 0.00 1.40
448 449 9.561069 AATAAGAGTCAACTGCCGATTATTTAT 57.439 29.630 0.00 0.00 0.00 1.40
452 453 7.865706 AAAATAAGAGTCAACTGCCGATTAT 57.134 32.000 0.00 0.00 0.00 1.28
572 576 1.193874 GGTTCTGGTTTTGTACGCGAG 59.806 52.381 15.93 0.00 0.00 5.03
574 578 0.938713 TGGTTCTGGTTTTGTACGCG 59.061 50.000 3.53 3.53 0.00 6.01
586 590 5.011943 TGAGGAAATGGGATTTTTGGTTCTG 59.988 40.000 0.00 0.00 31.47 3.02
641 645 7.592903 GCAAGCTAAGCAGGAATATTAAATCAC 59.407 37.037 6.22 0.00 0.00 3.06
643 647 7.651808 TGCAAGCTAAGCAGGAATATTAAATC 58.348 34.615 9.48 0.00 37.02 2.17
675 679 2.677875 GGCAGGGGAAGCTTGTGG 60.678 66.667 2.10 0.00 0.00 4.17
709 717 1.294780 CCAGCTTGCTCGGACTTCT 59.705 57.895 0.00 0.00 0.00 2.85
710 718 2.394563 GCCAGCTTGCTCGGACTTC 61.395 63.158 1.78 0.00 0.00 3.01
711 719 2.359230 GCCAGCTTGCTCGGACTT 60.359 61.111 1.78 0.00 0.00 3.01
712 720 4.400961 GGCCAGCTTGCTCGGACT 62.401 66.667 9.95 0.00 0.00 3.85
747 755 0.167251 GCGGGAATACGGTGTGTTTG 59.833 55.000 0.00 0.00 0.00 2.93
759 767 2.729194 AGCGAGATATCTAGCGGGAAT 58.271 47.619 25.94 10.55 46.96 3.01
788 796 7.049140 GCCATGGCGATTATTATTAAAAAGC 57.951 36.000 23.48 0.00 0.00 3.51
852 906 6.128035 TGGCATGCACCGATTATATAATCAAC 60.128 38.462 27.19 16.61 41.59 3.18
853 907 5.942826 TGGCATGCACCGATTATATAATCAA 59.057 36.000 27.19 12.57 41.59 2.57
919 973 0.388659 CTTGGATCTCGAGAGGCTGG 59.611 60.000 21.52 7.14 0.00 4.85
929 983 0.537188 TGCGGGACTTCTTGGATCTC 59.463 55.000 0.00 0.00 0.00 2.75
946 1000 4.487412 ACCGTACGCCGCTAGTGC 62.487 66.667 10.49 0.00 34.38 4.40
978 1035 6.292381 CCATCACGTACGTACCTAGTACTTAC 60.292 46.154 22.34 10.07 41.51 2.34
985 1042 1.002033 GCCCATCACGTACGTACCTAG 60.002 57.143 22.34 8.55 0.00 3.02
986 1043 1.024271 GCCCATCACGTACGTACCTA 58.976 55.000 22.34 7.47 0.00 3.08
987 1044 1.811860 GCCCATCACGTACGTACCT 59.188 57.895 22.34 5.75 0.00 3.08
1110 1167 4.779733 TGCGTCTCCTCCCCCTCC 62.780 72.222 0.00 0.00 0.00 4.30
1111 1168 3.462678 GTGCGTCTCCTCCCCCTC 61.463 72.222 0.00 0.00 0.00 4.30
1536 1593 2.679336 TGCTAGTACAGTATGCGAACGA 59.321 45.455 0.00 0.00 42.53 3.85
1539 1596 3.181490 CCTGTGCTAGTACAGTATGCGAA 60.181 47.826 31.09 1.60 45.12 4.70
1549 1606 2.623889 ACGATCCATCCTGTGCTAGTAC 59.376 50.000 3.70 3.70 0.00 2.73
1550 1607 2.945456 ACGATCCATCCTGTGCTAGTA 58.055 47.619 0.00 0.00 0.00 1.82
1552 1609 2.898729 AACGATCCATCCTGTGCTAG 57.101 50.000 0.00 0.00 0.00 3.42
1569 1626 5.560966 ATGAATCCATCACACGGTTAAAC 57.439 39.130 0.00 0.00 41.93 2.01
1624 1681 6.572314 CGCAGGTTCCCTTCTGAAAATTAAAT 60.572 38.462 0.00 0.00 33.11 1.40
1628 1685 2.558359 CGCAGGTTCCCTTCTGAAAATT 59.442 45.455 0.00 0.00 33.11 1.82
1679 1739 6.631016 ACACACACTATCTACGAAACATGAT 58.369 36.000 0.00 0.00 0.00 2.45
1895 1962 0.329596 ACATGGAGAAGGTTGCCTCC 59.670 55.000 0.00 0.00 46.99 4.30
1896 1963 1.271597 ACACATGGAGAAGGTTGCCTC 60.272 52.381 0.00 0.00 30.89 4.70
1897 1964 0.773644 ACACATGGAGAAGGTTGCCT 59.226 50.000 0.00 0.00 33.87 4.75
1922 2065 4.260784 CGGGCGATAAATCAAAAGAGGAAG 60.261 45.833 0.00 0.00 0.00 3.46
1978 2121 4.857037 GCGTATCTGTTTTCCATGTTTTCC 59.143 41.667 0.00 0.00 0.00 3.13
1985 2128 4.517285 AGACATGCGTATCTGTTTTCCAT 58.483 39.130 0.00 0.00 0.00 3.41
2027 2171 0.880278 GACGCTTGAGGCTTGACACA 60.880 55.000 0.00 0.00 39.13 3.72
2030 2174 2.035442 GGGACGCTTGAGGCTTGAC 61.035 63.158 0.00 0.00 39.13 3.18
2035 2179 1.657751 GGAATTGGGACGCTTGAGGC 61.658 60.000 0.00 0.00 37.64 4.70
2036 2180 0.322456 TGGAATTGGGACGCTTGAGG 60.322 55.000 0.00 0.00 0.00 3.86
2037 2181 0.804989 GTGGAATTGGGACGCTTGAG 59.195 55.000 0.00 0.00 0.00 3.02
2038 2182 0.400213 AGTGGAATTGGGACGCTTGA 59.600 50.000 0.00 0.00 0.00 3.02
2039 2183 0.523072 CAGTGGAATTGGGACGCTTG 59.477 55.000 0.00 0.00 0.00 4.01
2040 2184 0.110486 ACAGTGGAATTGGGACGCTT 59.890 50.000 0.00 0.00 0.00 4.68
2041 2185 0.110486 AACAGTGGAATTGGGACGCT 59.890 50.000 0.00 0.00 0.00 5.07
2042 2186 0.240945 CAACAGTGGAATTGGGACGC 59.759 55.000 0.00 0.00 0.00 5.19
2134 2278 1.002134 AGGGATCAAACGGGCAGTG 60.002 57.895 0.00 0.00 0.00 3.66
2138 2282 2.341846 TTATCAGGGATCAAACGGGC 57.658 50.000 0.00 0.00 0.00 6.13
2148 2296 2.108250 GCTAGGGGCATTTTATCAGGGA 59.892 50.000 0.00 0.00 41.35 4.20
2150 2298 3.515602 AGCTAGGGGCATTTTATCAGG 57.484 47.619 0.00 0.00 44.79 3.86
2166 2314 7.821846 ACATTTTTCTGTTCCAAAACAAAGCTA 59.178 29.630 0.00 0.00 44.53 3.32
2169 2324 7.334171 AGGACATTTTTCTGTTCCAAAACAAAG 59.666 33.333 0.00 0.00 44.53 2.77
2218 2373 1.016130 AGCAAGGTGATGAACGCTCG 61.016 55.000 0.00 0.00 0.00 5.03
2228 2383 1.073722 CTCTTGGGCAGCAAGGTGA 59.926 57.895 3.05 0.00 0.00 4.02
2229 2384 1.228367 ACTCTTGGGCAGCAAGGTG 60.228 57.895 0.00 0.00 0.00 4.00
2230 2385 1.228367 CACTCTTGGGCAGCAAGGT 60.228 57.895 0.00 0.00 0.00 3.50
2231 2386 2.633509 GCACTCTTGGGCAGCAAGG 61.634 63.158 0.00 0.00 0.00 3.61
2232 2387 2.633509 GGCACTCTTGGGCAGCAAG 61.634 63.158 0.00 0.00 0.00 4.01
2250 2405 7.237173 GGTAGTCAAACAAAGATTCAGAATCG 58.763 38.462 16.09 6.30 42.75 3.34
2254 2409 5.607477 ACGGTAGTCAAACAAAGATTCAGA 58.393 37.500 0.00 0.00 0.00 3.27
2278 2433 0.472543 AGATGGATGGGGCTGATCGA 60.473 55.000 0.00 0.00 0.00 3.59
2316 2474 1.662686 AGGGAGAGGGTTTTGGAGAG 58.337 55.000 0.00 0.00 0.00 3.20
2319 2477 1.427753 GGAAAGGGAGAGGGTTTTGGA 59.572 52.381 0.00 0.00 0.00 3.53
2320 2478 1.429299 AGGAAAGGGAGAGGGTTTTGG 59.571 52.381 0.00 0.00 0.00 3.28
2321 2479 2.980246 AGGAAAGGGAGAGGGTTTTG 57.020 50.000 0.00 0.00 0.00 2.44
2323 2481 5.412617 TTTTAAGGAAAGGGAGAGGGTTT 57.587 39.130 0.00 0.00 0.00 3.27
2324 2482 5.412617 TTTTTAAGGAAAGGGAGAGGGTT 57.587 39.130 0.00 0.00 0.00 4.11
2345 2503 8.100791 GCCAAAGGGAGAGGTTTATTTTTATTT 58.899 33.333 0.00 0.00 35.59 1.40
2346 2504 7.457852 AGCCAAAGGGAGAGGTTTATTTTTATT 59.542 33.333 0.00 0.00 35.59 1.40
2347 2505 6.959954 AGCCAAAGGGAGAGGTTTATTTTTAT 59.040 34.615 0.00 0.00 35.59 1.40
2348 2506 6.319715 AGCCAAAGGGAGAGGTTTATTTTTA 58.680 36.000 0.00 0.00 35.59 1.52
2349 2507 5.155161 AGCCAAAGGGAGAGGTTTATTTTT 58.845 37.500 0.00 0.00 35.59 1.94
2350 2508 4.752063 AGCCAAAGGGAGAGGTTTATTTT 58.248 39.130 0.00 0.00 35.59 1.82
2351 2509 4.404185 AGCCAAAGGGAGAGGTTTATTT 57.596 40.909 0.00 0.00 35.59 1.40
2352 2510 4.089361 CAAGCCAAAGGGAGAGGTTTATT 58.911 43.478 0.00 0.00 35.59 1.40
2353 2511 3.701664 CAAGCCAAAGGGAGAGGTTTAT 58.298 45.455 0.00 0.00 35.59 1.40
2354 2512 2.817839 GCAAGCCAAAGGGAGAGGTTTA 60.818 50.000 0.00 0.00 35.59 2.01
2355 2513 2.001076 CAAGCCAAAGGGAGAGGTTT 57.999 50.000 0.00 0.00 35.59 3.27
2356 2514 0.540597 GCAAGCCAAAGGGAGAGGTT 60.541 55.000 0.00 0.00 35.59 3.50
2357 2515 1.075659 GCAAGCCAAAGGGAGAGGT 59.924 57.895 0.00 0.00 35.59 3.85
2393 2551 1.098712 GCTTTGGTTCACCGACACCA 61.099 55.000 0.00 0.00 41.55 4.17
2400 2558 0.736053 TGAACACGCTTTGGTTCACC 59.264 50.000 3.31 0.00 46.01 4.02
2414 2572 0.248743 GATACGTCCGGCGATGAACA 60.249 55.000 22.10 3.59 44.77 3.18
2430 2595 5.748402 AGCTGAAAGTTGTCATGGATGATA 58.252 37.500 0.00 0.00 36.07 2.15
2432 2597 4.005650 GAGCTGAAAGTTGTCATGGATGA 58.994 43.478 0.00 0.00 35.30 2.92
2449 2614 1.845809 GCGGTGTGTTTCAGGAGCTG 61.846 60.000 0.00 0.00 0.00 4.24
2455 2620 1.151777 AGACGTGCGGTGTGTTTCAG 61.152 55.000 0.00 0.00 0.00 3.02
2460 2625 0.944311 GAATGAGACGTGCGGTGTGT 60.944 55.000 0.00 0.00 0.00 3.72
2469 2634 3.961480 TTCAGGATGTGAATGAGACGT 57.039 42.857 0.00 0.00 40.45 4.34
2483 2648 1.618343 TCATGCGTGAGACTTTCAGGA 59.382 47.619 3.97 0.00 42.85 3.86
2524 2689 3.438216 TGAGATTGAGTCAAATGCCCA 57.562 42.857 10.14 1.63 0.00 5.36
2529 2694 7.288560 AGAATAGCCATGAGATTGAGTCAAAT 58.711 34.615 10.14 1.34 0.00 2.32
2532 2697 5.883685 AGAATAGCCATGAGATTGAGTCA 57.116 39.130 0.00 0.00 0.00 3.41
2533 2698 6.991531 AGAAAGAATAGCCATGAGATTGAGTC 59.008 38.462 0.00 0.00 0.00 3.36
2554 2719 5.441718 AGGTGGCTGAGAATATGAAGAAA 57.558 39.130 0.00 0.00 0.00 2.52
2589 2755 1.218230 GAGATCCACTCGCGCCAATC 61.218 60.000 0.00 0.00 35.84 2.67
2590 2756 1.227380 GAGATCCACTCGCGCCAAT 60.227 57.895 0.00 0.00 35.84 3.16
2591 2757 2.184322 GAGATCCACTCGCGCCAA 59.816 61.111 0.00 0.00 35.84 4.52
2630 2796 5.861251 CACGCCATTAACATGTAAATGTGTT 59.139 36.000 0.00 0.00 34.56 3.32
2639 2805 1.653094 CGGGCACGCCATTAACATGT 61.653 55.000 10.83 0.00 37.98 3.21
2641 2807 2.118404 CCGGGCACGCCATTAACAT 61.118 57.895 0.58 0.00 39.22 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.