Multiple sequence alignment - TraesCS5A01G210200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G210200 chr5A 100.000 4143 0 0 1 4143 423679408 423683550 0.000000e+00 7651.0
1 TraesCS5A01G210200 chr5A 84.653 1629 181 37 1772 3361 423745815 423747413 0.000000e+00 1559.0
2 TraesCS5A01G210200 chr5A 89.781 685 47 17 1001 1669 423744978 423745655 0.000000e+00 856.0
3 TraesCS5A01G210200 chr5A 85.825 515 52 15 1115 1624 430508317 430507819 1.020000e-145 527.0
4 TraesCS5A01G210200 chr5A 88.511 235 25 2 1755 1988 430507490 430507257 2.440000e-72 283.0
5 TraesCS5A01G210200 chr5A 95.333 150 7 0 1476 1625 430958152 430958003 5.350000e-59 239.0
6 TraesCS5A01G210200 chr5A 86.538 156 12 6 3844 3996 423664045 423664194 3.310000e-36 163.0
7 TraesCS5A01G210200 chr5A 86.667 120 16 0 152 271 514806086 514806205 2.600000e-27 134.0
8 TraesCS5A01G210200 chr5A 88.571 105 10 2 174 277 15122541 15122644 4.350000e-25 126.0
9 TraesCS5A01G210200 chr5A 88.710 62 5 2 1685 1745 423745655 423745715 1.600000e-09 75.0
10 TraesCS5A01G210200 chr5D 94.671 1595 83 2 1752 3346 325423519 325425111 0.000000e+00 2473.0
11 TraesCS5A01G210200 chr5D 91.255 1052 50 18 699 1746 325422427 325423440 0.000000e+00 1395.0
12 TraesCS5A01G210200 chr5D 86.018 658 63 14 3416 4046 325425425 325426080 0.000000e+00 678.0
13 TraesCS5A01G210200 chr5D 85.605 521 62 9 1115 1624 326118243 326118761 6.100000e-148 534.0
14 TraesCS5A01G210200 chr5D 84.323 421 37 15 1001 1396 325663661 325664077 6.500000e-103 385.0
15 TraesCS5A01G210200 chr5D 88.186 237 25 2 1752 1988 326119093 326119326 3.150000e-71 279.0
16 TraesCS5A01G210200 chr5D 94.000 150 9 0 1476 1625 325664132 325664281 1.160000e-55 228.0
17 TraesCS5A01G210200 chr5D 85.202 223 31 2 1767 1988 325664557 325664778 1.160000e-55 228.0
18 TraesCS5A01G210200 chr5D 83.482 224 33 3 1767 1988 325647622 325647843 5.430000e-49 206.0
19 TraesCS5A01G210200 chr5D 89.873 158 14 2 3846 4001 325374604 325374761 7.020000e-48 202.0
20 TraesCS5A01G210200 chr5B 92.286 1750 108 7 1752 3500 377699414 377701137 0.000000e+00 2459.0
21 TraesCS5A01G210200 chr5B 85.794 1605 199 22 1772 3361 377844490 377846080 0.000000e+00 1674.0
22 TraesCS5A01G210200 chr5B 93.123 1047 47 12 700 1746 377698290 377699311 0.000000e+00 1511.0
23 TraesCS5A01G210200 chr5B 89.515 763 50 16 1001 1745 377843634 377844384 0.000000e+00 939.0
24 TraesCS5A01G210200 chr5B 86.042 523 58 14 1115 1625 378068455 378068974 7.830000e-152 547.0
25 TraesCS5A01G210200 chr5B 82.722 654 66 31 1001 1624 378510565 378511201 4.710000e-149 538.0
26 TraesCS5A01G210200 chr5B 83.798 574 68 20 3497 4050 377701217 377701785 4.750000e-144 521.0
27 TraesCS5A01G210200 chr5B 81.887 657 73 25 1001 1624 377978202 377978845 2.860000e-141 512.0
28 TraesCS5A01G210200 chr5B 89.076 238 24 2 1752 1988 378511530 378511766 1.130000e-75 294.0
29 TraesCS5A01G210200 chr5B 91.034 145 7 5 2 146 377695714 377695852 1.520000e-44 191.0
30 TraesCS5A01G210200 chr3A 91.781 146 12 0 417 562 510009197 510009052 1.950000e-48 204.0
31 TraesCS5A01G210200 chr3A 91.304 138 12 0 424 561 41614468 41614331 5.470000e-44 189.0
32 TraesCS5A01G210200 chr3A 95.000 120 6 0 422 541 688610632 688610513 5.470000e-44 189.0
33 TraesCS5A01G210200 chr3B 92.254 142 11 0 424 565 616891698 616891557 7.020000e-48 202.0
34 TraesCS5A01G210200 chr3B 87.838 148 15 2 560 707 161655647 161655503 1.980000e-38 171.0
35 TraesCS5A01G210200 chr7B 90.647 139 11 2 424 561 640260921 640260784 2.540000e-42 183.0
36 TraesCS5A01G210200 chr7B 100.000 29 0 0 4114 4142 108271058 108271086 2.000000e-03 54.7
37 TraesCS5A01G210200 chr7A 91.111 135 12 0 424 558 458133843 458133977 2.540000e-42 183.0
38 TraesCS5A01G210200 chr7A 88.732 142 13 2 560 701 126132225 126132363 1.980000e-38 171.0
39 TraesCS5A01G210200 chr6D 89.655 145 12 2 560 704 285445676 285445535 9.150000e-42 182.0
40 TraesCS5A01G210200 chr6D 89.209 139 13 2 424 561 467806071 467805934 5.510000e-39 172.0
41 TraesCS5A01G210200 chr6D 91.304 115 10 0 308 422 398840900 398840786 1.540000e-34 158.0
42 TraesCS5A01G210200 chr4A 90.977 133 12 0 426 558 623949165 623949297 3.290000e-41 180.0
43 TraesCS5A01G210200 chr1B 89.928 139 12 2 424 561 27238043 27237906 1.180000e-40 178.0
44 TraesCS5A01G210200 chr1B 83.333 120 17 3 154 271 645096666 645096548 1.570000e-19 108.0
45 TraesCS5A01G210200 chr3D 88.966 145 13 2 560 704 273862704 273862845 4.260000e-40 176.0
46 TraesCS5A01G210200 chr3D 88.276 145 14 2 560 704 303524715 303524574 1.980000e-38 171.0
47 TraesCS5A01G210200 chr3D 87.755 147 15 2 560 706 347498516 347498373 7.120000e-38 169.0
48 TraesCS5A01G210200 chr1D 88.966 145 13 2 560 704 216847136 216847277 4.260000e-40 176.0
49 TraesCS5A01G210200 chr1D 88.710 124 12 2 149 271 62441546 62441424 2.580000e-32 150.0
50 TraesCS5A01G210200 chr2D 88.000 150 12 5 560 708 423556576 423556432 5.510000e-39 172.0
51 TraesCS5A01G210200 chr2D 91.379 116 9 1 308 422 247787054 247787169 1.540000e-34 158.0
52 TraesCS5A01G210200 chr2D 91.304 115 7 2 308 422 95777563 95777674 1.990000e-33 154.0
53 TraesCS5A01G210200 chr2B 92.982 114 8 0 309 422 734394511 734394398 2.560000e-37 167.0
54 TraesCS5A01G210200 chr2B 87.970 133 12 3 151 279 754706320 754706188 1.990000e-33 154.0
55 TraesCS5A01G210200 chr6B 92.174 115 9 0 308 422 324256325 324256439 3.310000e-36 163.0
56 TraesCS5A01G210200 chr4D 94.340 106 6 0 308 413 441122897 441122792 3.310000e-36 163.0
57 TraesCS5A01G210200 chr4D 87.413 143 15 2 560 702 87796119 87796258 1.190000e-35 161.0
58 TraesCS5A01G210200 chr1A 92.174 115 9 0 308 422 488068571 488068457 3.310000e-36 163.0
59 TraesCS5A01G210200 chr6A 91.304 115 10 0 308 422 387877247 387877133 1.540000e-34 158.0
60 TraesCS5A01G210200 chr2A 91.304 115 9 1 308 422 210063145 210063032 5.550000e-34 156.0
61 TraesCS5A01G210200 chr7D 87.705 122 13 2 157 277 30531716 30531836 1.550000e-29 141.0
62 TraesCS5A01G210200 chr7D 100.000 28 0 0 4116 4143 591282363 591282390 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G210200 chr5A 423679408 423683550 4142 False 7651.000000 7651 100.000000 1 4143 1 chr5A.!!$F3 4142
1 TraesCS5A01G210200 chr5A 423744978 423747413 2435 False 830.000000 1559 87.714667 1001 3361 3 chr5A.!!$F5 2360
2 TraesCS5A01G210200 chr5A 430507257 430508317 1060 True 405.000000 527 87.168000 1115 1988 2 chr5A.!!$R2 873
3 TraesCS5A01G210200 chr5D 325422427 325426080 3653 False 1515.333333 2473 90.648000 699 4046 3 chr5D.!!$F3 3347
4 TraesCS5A01G210200 chr5D 326118243 326119326 1083 False 406.500000 534 86.895500 1115 1988 2 chr5D.!!$F5 873
5 TraesCS5A01G210200 chr5D 325663661 325664778 1117 False 280.333333 385 87.841667 1001 1988 3 chr5D.!!$F4 987
6 TraesCS5A01G210200 chr5B 377843634 377846080 2446 False 1306.500000 1674 87.654500 1001 3361 2 chr5B.!!$F4 2360
7 TraesCS5A01G210200 chr5B 377695714 377701785 6071 False 1170.500000 2459 90.060250 2 4050 4 chr5B.!!$F3 4048
8 TraesCS5A01G210200 chr5B 378068455 378068974 519 False 547.000000 547 86.042000 1115 1625 1 chr5B.!!$F2 510
9 TraesCS5A01G210200 chr5B 377978202 377978845 643 False 512.000000 512 81.887000 1001 1624 1 chr5B.!!$F1 623
10 TraesCS5A01G210200 chr5B 378510565 378511766 1201 False 416.000000 538 85.899000 1001 1988 2 chr5B.!!$F5 987

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
810 2830 0.036671 AAGGTAGTTGGCGCCAGTAC 60.037 55.0 30.75 30.16 0.0 2.73 F
1207 3257 0.101399 CTTCACATACGCCGAGCTCT 59.899 55.0 12.85 0.00 0.0 4.09 F
1459 3579 0.179134 GGCTGCTAACTGACGACGAT 60.179 55.0 0.00 0.00 0.0 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2196 4591 0.031043 CCAGTCACGTCGGTGTTGTA 59.969 55.0 0.0 0.0 44.68 2.41 R
2717 5113 0.466189 ACCTGGTGCAGTTTGTCTGG 60.466 55.0 0.0 0.0 43.78 3.86 R
3365 5768 0.613260 ACTCAGTCATTTAGCCCGCA 59.387 50.0 0.0 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.860941 CAGAATGGAGATACAGTGGTAGT 57.139 43.478 0.00 0.00 31.88 2.73
147 148 9.819267 AAAGCTAGAACTATGTCAAATAGTACC 57.181 33.333 0.00 0.00 34.04 3.34
148 149 7.953752 AGCTAGAACTATGTCAAATAGTACCC 58.046 38.462 0.00 0.00 34.04 3.69
149 150 7.015389 AGCTAGAACTATGTCAAATAGTACCCC 59.985 40.741 0.00 0.00 34.04 4.95
150 151 6.496144 AGAACTATGTCAAATAGTACCCCC 57.504 41.667 0.00 0.00 34.04 5.40
169 170 4.439253 CCCCCTCCTTTCTGGTTTATAG 57.561 50.000 0.00 0.00 37.07 1.31
170 171 4.045022 CCCCCTCCTTTCTGGTTTATAGA 58.955 47.826 0.00 0.00 37.07 1.98
171 172 4.103311 CCCCCTCCTTTCTGGTTTATAGAG 59.897 50.000 0.00 0.00 37.07 2.43
172 173 4.445019 CCCCTCCTTTCTGGTTTATAGAGC 60.445 50.000 0.00 0.00 37.07 4.09
173 174 4.410555 CCCTCCTTTCTGGTTTATAGAGCT 59.589 45.833 0.00 0.00 37.07 4.09
174 175 5.104318 CCCTCCTTTCTGGTTTATAGAGCTT 60.104 44.000 0.00 0.00 37.07 3.74
176 177 7.202139 CCCTCCTTTCTGGTTTATAGAGCTTAT 60.202 40.741 0.00 0.00 37.07 1.73
177 178 7.875554 CCTCCTTTCTGGTTTATAGAGCTTATC 59.124 40.741 0.00 0.00 37.07 1.75
178 179 8.554490 TCCTTTCTGGTTTATAGAGCTTATCT 57.446 34.615 0.00 0.00 38.40 1.98
179 180 8.993424 TCCTTTCTGGTTTATAGAGCTTATCTT 58.007 33.333 0.00 0.00 36.96 2.40
209 210 7.946381 TTTTGTTTTTCCAATTTAAAGGGCT 57.054 28.000 4.24 0.00 0.00 5.19
210 211 7.561021 TTTGTTTTTCCAATTTAAAGGGCTC 57.439 32.000 4.24 0.00 0.00 4.70
211 212 6.240549 TGTTTTTCCAATTTAAAGGGCTCA 57.759 33.333 4.24 0.00 0.00 4.26
212 213 6.836242 TGTTTTTCCAATTTAAAGGGCTCAT 58.164 32.000 4.24 0.00 0.00 2.90
213 214 7.286313 TGTTTTTCCAATTTAAAGGGCTCATT 58.714 30.769 4.24 0.00 0.00 2.57
214 215 7.777440 TGTTTTTCCAATTTAAAGGGCTCATTT 59.223 29.630 4.24 0.00 0.00 2.32
215 216 8.629158 GTTTTTCCAATTTAAAGGGCTCATTTT 58.371 29.630 4.24 0.00 0.00 1.82
216 217 7.977789 TTTCCAATTTAAAGGGCTCATTTTC 57.022 32.000 4.24 0.00 0.00 2.29
217 218 6.678568 TCCAATTTAAAGGGCTCATTTTCA 57.321 33.333 4.24 0.00 0.00 2.69
218 219 7.256494 TCCAATTTAAAGGGCTCATTTTCAT 57.744 32.000 4.24 0.00 0.00 2.57
219 220 7.330262 TCCAATTTAAAGGGCTCATTTTCATC 58.670 34.615 4.24 0.00 0.00 2.92
220 221 7.180766 TCCAATTTAAAGGGCTCATTTTCATCT 59.819 33.333 4.24 0.00 0.00 2.90
221 222 7.493645 CCAATTTAAAGGGCTCATTTTCATCTC 59.506 37.037 0.00 0.00 0.00 2.75
222 223 7.722949 ATTTAAAGGGCTCATTTTCATCTCA 57.277 32.000 0.00 0.00 0.00 3.27
223 224 7.722949 TTTAAAGGGCTCATTTTCATCTCAT 57.277 32.000 0.00 0.00 0.00 2.90
224 225 5.593679 AAAGGGCTCATTTTCATCTCATG 57.406 39.130 0.00 0.00 0.00 3.07
225 226 4.246712 AGGGCTCATTTTCATCTCATGT 57.753 40.909 0.00 0.00 0.00 3.21
226 227 4.607239 AGGGCTCATTTTCATCTCATGTT 58.393 39.130 0.00 0.00 0.00 2.71
227 228 5.021458 AGGGCTCATTTTCATCTCATGTTT 58.979 37.500 0.00 0.00 0.00 2.83
228 229 6.189859 AGGGCTCATTTTCATCTCATGTTTA 58.810 36.000 0.00 0.00 0.00 2.01
229 230 6.320672 AGGGCTCATTTTCATCTCATGTTTAG 59.679 38.462 0.00 0.00 0.00 1.85
230 231 6.096001 GGGCTCATTTTCATCTCATGTTTAGT 59.904 38.462 0.00 0.00 0.00 2.24
231 232 7.363268 GGGCTCATTTTCATCTCATGTTTAGTT 60.363 37.037 0.00 0.00 0.00 2.24
232 233 8.031277 GGCTCATTTTCATCTCATGTTTAGTTT 58.969 33.333 0.00 0.00 0.00 2.66
233 234 9.070149 GCTCATTTTCATCTCATGTTTAGTTTC 57.930 33.333 0.00 0.00 0.00 2.78
238 239 7.912056 TTCATCTCATGTTTAGTTTCTGAGG 57.088 36.000 0.00 0.00 35.24 3.86
239 240 5.877012 TCATCTCATGTTTAGTTTCTGAGGC 59.123 40.000 0.00 0.00 35.24 4.70
240 241 4.245660 TCTCATGTTTAGTTTCTGAGGCG 58.754 43.478 0.00 0.00 35.24 5.52
241 242 2.742053 TCATGTTTAGTTTCTGAGGCGC 59.258 45.455 0.00 0.00 0.00 6.53
242 243 2.248280 TGTTTAGTTTCTGAGGCGCA 57.752 45.000 10.83 0.00 0.00 6.09
243 244 2.778299 TGTTTAGTTTCTGAGGCGCAT 58.222 42.857 10.83 0.00 0.00 4.73
244 245 3.146066 TGTTTAGTTTCTGAGGCGCATT 58.854 40.909 10.83 0.00 0.00 3.56
245 246 4.320023 TGTTTAGTTTCTGAGGCGCATTA 58.680 39.130 10.83 0.00 0.00 1.90
246 247 4.757657 TGTTTAGTTTCTGAGGCGCATTAA 59.242 37.500 10.83 0.00 0.00 1.40
247 248 5.239744 TGTTTAGTTTCTGAGGCGCATTAAA 59.760 36.000 10.83 1.60 0.00 1.52
248 249 6.072175 TGTTTAGTTTCTGAGGCGCATTAAAT 60.072 34.615 10.83 0.00 0.00 1.40
249 250 6.509418 TTAGTTTCTGAGGCGCATTAAATT 57.491 33.333 10.83 4.36 0.00 1.82
250 251 5.391312 AGTTTCTGAGGCGCATTAAATTT 57.609 34.783 10.83 0.00 0.00 1.82
251 252 5.783111 AGTTTCTGAGGCGCATTAAATTTT 58.217 33.333 10.83 0.00 0.00 1.82
252 253 6.223120 AGTTTCTGAGGCGCATTAAATTTTT 58.777 32.000 10.83 0.00 0.00 1.94
253 254 6.146021 AGTTTCTGAGGCGCATTAAATTTTTG 59.854 34.615 10.83 0.00 0.00 2.44
254 255 3.925913 TCTGAGGCGCATTAAATTTTTGC 59.074 39.130 10.83 13.14 0.00 3.68
255 256 3.657634 TGAGGCGCATTAAATTTTTGCA 58.342 36.364 10.83 0.00 36.15 4.08
256 257 4.252073 TGAGGCGCATTAAATTTTTGCAT 58.748 34.783 10.83 9.35 36.15 3.96
257 258 4.093115 TGAGGCGCATTAAATTTTTGCATG 59.907 37.500 10.83 9.48 36.15 4.06
258 259 3.100089 GGCGCATTAAATTTTTGCATGC 58.900 40.909 11.82 11.82 36.15 4.06
259 260 3.425892 GGCGCATTAAATTTTTGCATGCA 60.426 39.130 18.46 18.46 37.72 3.96
260 261 4.156915 GCGCATTAAATTTTTGCATGCAA 58.843 34.783 28.80 28.80 37.72 4.08
261 262 4.261118 GCGCATTAAATTTTTGCATGCAAG 59.739 37.500 30.25 17.64 37.72 4.01
262 263 5.619513 CGCATTAAATTTTTGCATGCAAGA 58.380 33.333 30.25 24.77 37.72 3.02
263 264 6.078479 CGCATTAAATTTTTGCATGCAAGAA 58.922 32.000 31.20 31.20 37.72 2.52
264 265 6.743627 CGCATTAAATTTTTGCATGCAAGAAT 59.256 30.769 32.40 32.40 40.80 2.40
265 266 7.271653 CGCATTAAATTTTTGCATGCAAGAATT 59.728 29.630 37.18 37.18 46.00 2.17
266 267 9.557338 GCATTAAATTTTTGCATGCAAGAATTA 57.443 25.926 39.94 31.72 44.47 1.40
293 294 5.959583 AAACACCATCCTTTTTAAACCCA 57.040 34.783 0.00 0.00 0.00 4.51
294 295 5.959583 AACACCATCCTTTTTAAACCCAA 57.040 34.783 0.00 0.00 0.00 4.12
295 296 5.959583 ACACCATCCTTTTTAAACCCAAA 57.040 34.783 0.00 0.00 0.00 3.28
296 297 5.676552 ACACCATCCTTTTTAAACCCAAAC 58.323 37.500 0.00 0.00 0.00 2.93
297 298 5.189934 ACACCATCCTTTTTAAACCCAAACA 59.810 36.000 0.00 0.00 0.00 2.83
298 299 6.126623 ACACCATCCTTTTTAAACCCAAACAT 60.127 34.615 0.00 0.00 0.00 2.71
299 300 7.071321 ACACCATCCTTTTTAAACCCAAACATA 59.929 33.333 0.00 0.00 0.00 2.29
300 301 7.386573 CACCATCCTTTTTAAACCCAAACATAC 59.613 37.037 0.00 0.00 0.00 2.39
301 302 7.071321 ACCATCCTTTTTAAACCCAAACATACA 59.929 33.333 0.00 0.00 0.00 2.29
302 303 7.386573 CCATCCTTTTTAAACCCAAACATACAC 59.613 37.037 0.00 0.00 0.00 2.90
303 304 7.663043 TCCTTTTTAAACCCAAACATACACT 57.337 32.000 0.00 0.00 0.00 3.55
304 305 7.718525 TCCTTTTTAAACCCAAACATACACTC 58.281 34.615 0.00 0.00 0.00 3.51
305 306 7.562088 TCCTTTTTAAACCCAAACATACACTCT 59.438 33.333 0.00 0.00 0.00 3.24
306 307 8.201464 CCTTTTTAAACCCAAACATACACTCTT 58.799 33.333 0.00 0.00 0.00 2.85
307 308 9.244799 CTTTTTAAACCCAAACATACACTCTTC 57.755 33.333 0.00 0.00 0.00 2.87
308 309 7.883391 TTTAAACCCAAACATACACTCTTCA 57.117 32.000 0.00 0.00 0.00 3.02
309 310 7.883391 TTAAACCCAAACATACACTCTTCAA 57.117 32.000 0.00 0.00 0.00 2.69
310 311 6.783708 AAACCCAAACATACACTCTTCAAA 57.216 33.333 0.00 0.00 0.00 2.69
311 312 6.976934 AACCCAAACATACACTCTTCAAAT 57.023 33.333 0.00 0.00 0.00 2.32
312 313 6.976934 ACCCAAACATACACTCTTCAAATT 57.023 33.333 0.00 0.00 0.00 1.82
313 314 8.472007 AACCCAAACATACACTCTTCAAATTA 57.528 30.769 0.00 0.00 0.00 1.40
314 315 8.650143 ACCCAAACATACACTCTTCAAATTAT 57.350 30.769 0.00 0.00 0.00 1.28
315 316 8.522830 ACCCAAACATACACTCTTCAAATTATG 58.477 33.333 0.00 0.00 0.00 1.90
316 317 7.975616 CCCAAACATACACTCTTCAAATTATGG 59.024 37.037 0.00 0.00 0.00 2.74
317 318 8.739039 CCAAACATACACTCTTCAAATTATGGA 58.261 33.333 0.00 0.00 0.00 3.41
318 319 9.778993 CAAACATACACTCTTCAAATTATGGAG 57.221 33.333 0.00 0.00 35.78 3.86
319 320 9.520515 AAACATACACTCTTCAAATTATGGAGT 57.479 29.630 0.00 0.00 35.93 3.85
323 324 6.674694 CACTCTTCAAATTATGGAGTGGAG 57.325 41.667 16.31 0.00 45.61 3.86
324 325 6.176183 CACTCTTCAAATTATGGAGTGGAGT 58.824 40.000 16.31 0.00 45.61 3.85
325 326 7.331026 CACTCTTCAAATTATGGAGTGGAGTA 58.669 38.462 16.31 0.00 45.61 2.59
326 327 7.824289 CACTCTTCAAATTATGGAGTGGAGTAA 59.176 37.037 16.31 0.00 45.61 2.24
327 328 8.383175 ACTCTTCAAATTATGGAGTGGAGTAAA 58.617 33.333 0.00 0.00 35.93 2.01
328 329 9.231297 CTCTTCAAATTATGGAGTGGAGTAAAA 57.769 33.333 0.00 0.00 35.93 1.52
329 330 9.581289 TCTTCAAATTATGGAGTGGAGTAAAAA 57.419 29.630 0.00 0.00 35.93 1.94
352 353 2.623535 GCATTGAAAAGATGCATGCCA 58.376 42.857 16.68 3.52 46.96 4.92
353 354 3.202906 GCATTGAAAAGATGCATGCCAT 58.797 40.909 16.68 8.81 46.96 4.40
362 363 2.201921 ATGCATGCCATCATCTCTCC 57.798 50.000 16.68 0.00 0.00 3.71
363 364 0.109913 TGCATGCCATCATCTCTCCC 59.890 55.000 16.68 0.00 0.00 4.30
364 365 0.608582 GCATGCCATCATCTCTCCCC 60.609 60.000 6.36 0.00 0.00 4.81
366 367 1.003349 CATGCCATCATCTCTCCCCTC 59.997 57.143 0.00 0.00 0.00 4.30
367 368 0.267054 TGCCATCATCTCTCCCCTCT 59.733 55.000 0.00 0.00 0.00 3.69
368 369 1.344803 TGCCATCATCTCTCCCCTCTT 60.345 52.381 0.00 0.00 0.00 2.85
369 370 1.773653 GCCATCATCTCTCCCCTCTTT 59.226 52.381 0.00 0.00 0.00 2.52
370 371 2.975489 GCCATCATCTCTCCCCTCTTTA 59.025 50.000 0.00 0.00 0.00 1.85
372 373 4.042684 GCCATCATCTCTCCCCTCTTTAAT 59.957 45.833 0.00 0.00 0.00 1.40
373 374 5.457342 GCCATCATCTCTCCCCTCTTTAATT 60.457 44.000 0.00 0.00 0.00 1.40
374 375 6.240002 GCCATCATCTCTCCCCTCTTTAATTA 60.240 42.308 0.00 0.00 0.00 1.40
375 376 7.164803 CCATCATCTCTCCCCTCTTTAATTAC 58.835 42.308 0.00 0.00 0.00 1.89
376 377 6.749036 TCATCTCTCCCCTCTTTAATTACC 57.251 41.667 0.00 0.00 0.00 2.85
377 378 5.607171 TCATCTCTCCCCTCTTTAATTACCC 59.393 44.000 0.00 0.00 0.00 3.69
378 379 4.967871 TCTCTCCCCTCTTTAATTACCCA 58.032 43.478 0.00 0.00 0.00 4.51
379 380 5.355711 TCTCTCCCCTCTTTAATTACCCAA 58.644 41.667 0.00 0.00 0.00 4.12
381 382 4.228895 TCTCCCCTCTTTAATTACCCAACC 59.771 45.833 0.00 0.00 0.00 3.77
382 383 3.270169 TCCCCTCTTTAATTACCCAACCC 59.730 47.826 0.00 0.00 0.00 4.11
384 385 3.629025 CCCTCTTTAATTACCCAACCCCC 60.629 52.174 0.00 0.00 0.00 5.40
387 388 5.277250 CTCTTTAATTACCCAACCCCCAAT 58.723 41.667 0.00 0.00 0.00 3.16
388 389 6.418964 TCTTTAATTACCCAACCCCCAATA 57.581 37.500 0.00 0.00 0.00 1.90
389 390 6.812649 TCTTTAATTACCCAACCCCCAATAA 58.187 36.000 0.00 0.00 0.00 1.40
390 391 6.898521 TCTTTAATTACCCAACCCCCAATAAG 59.101 38.462 0.00 0.00 0.00 1.73
391 392 2.535836 TTACCCAACCCCCAATAAGC 57.464 50.000 0.00 0.00 0.00 3.09
393 394 1.688750 ACCCAACCCCCAATAAGCTA 58.311 50.000 0.00 0.00 0.00 3.32
395 396 2.024369 ACCCAACCCCCAATAAGCTAAG 60.024 50.000 0.00 0.00 0.00 2.18
396 397 2.024369 CCCAACCCCCAATAAGCTAAGT 60.024 50.000 0.00 0.00 0.00 2.24
397 398 3.023832 CCAACCCCCAATAAGCTAAGTG 58.976 50.000 0.00 0.00 0.00 3.16
399 400 1.638589 ACCCCCAATAAGCTAAGTGCA 59.361 47.619 0.00 0.00 45.94 4.57
401 402 2.624838 CCCCCAATAAGCTAAGTGCATG 59.375 50.000 0.00 0.00 45.94 4.06
402 403 3.290710 CCCCAATAAGCTAAGTGCATGT 58.709 45.455 0.00 0.00 45.94 3.21
404 405 4.516698 CCCCAATAAGCTAAGTGCATGTAG 59.483 45.833 0.00 0.00 45.94 2.74
409 410 8.408601 CCAATAAGCTAAGTGCATGTAGAAAAT 58.591 33.333 10.04 0.00 45.94 1.82
413 414 8.792830 AAGCTAAGTGCATGTAGAAAATAAGA 57.207 30.769 10.04 0.00 45.94 2.10
415 416 7.010552 AGCTAAGTGCATGTAGAAAATAAGACG 59.989 37.037 10.04 0.00 45.94 4.18
416 417 7.010183 GCTAAGTGCATGTAGAAAATAAGACGA 59.990 37.037 10.04 0.00 42.31 4.20
417 418 6.648725 AGTGCATGTAGAAAATAAGACGAC 57.351 37.500 0.00 0.00 0.00 4.34
418 419 6.398918 AGTGCATGTAGAAAATAAGACGACT 58.601 36.000 0.00 0.00 0.00 4.18
420 421 8.198109 AGTGCATGTAGAAAATAAGACGACTAT 58.802 33.333 0.00 0.00 0.00 2.12
421 422 8.269424 GTGCATGTAGAAAATAAGACGACTATG 58.731 37.037 0.00 0.00 0.00 2.23
423 424 8.480853 GCATGTAGAAAATAAGACGACTATGAC 58.519 37.037 0.00 0.00 0.00 3.06
424 425 8.969267 CATGTAGAAAATAAGACGACTATGACC 58.031 37.037 0.00 0.00 0.00 4.02
425 426 7.191551 TGTAGAAAATAAGACGACTATGACCG 58.808 38.462 0.00 0.00 0.00 4.79
426 427 5.041940 AGAAAATAAGACGACTATGACCGC 58.958 41.667 0.00 0.00 0.00 5.68
427 428 2.682952 ATAAGACGACTATGACCGCG 57.317 50.000 0.00 0.00 0.00 6.46
428 429 1.372582 TAAGACGACTATGACCGCGT 58.627 50.000 4.92 0.00 39.99 6.01
430 431 0.098376 AGACGACTATGACCGCGTTC 59.902 55.000 4.92 0.00 37.07 3.95
431 432 1.192436 GACGACTATGACCGCGTTCG 61.192 60.000 4.92 3.88 37.07 3.95
453 454 4.787280 CTCCCCGCTCCCTCCACT 62.787 72.222 0.00 0.00 0.00 4.00
454 455 4.779733 TCCCCGCTCCCTCCACTC 62.780 72.222 0.00 0.00 0.00 3.51
460 461 3.151022 CTCCCTCCACTCCGCTCC 61.151 72.222 0.00 0.00 0.00 4.70
473 474 4.500116 GCTCCGGAGTGGACGAGC 62.500 72.222 31.43 12.80 43.74 5.03
474 475 3.827898 CTCCGGAGTGGACGAGCC 61.828 72.222 24.04 0.00 43.74 4.70
475 476 4.361971 TCCGGAGTGGACGAGCCT 62.362 66.667 0.00 0.00 43.74 4.58
476 477 3.827898 CCGGAGTGGACGAGCCTC 61.828 72.222 0.00 0.00 42.00 4.70
477 478 2.752238 CGGAGTGGACGAGCCTCT 60.752 66.667 0.00 0.00 43.00 3.69
479 480 1.440938 CGGAGTGGACGAGCCTCTAG 61.441 65.000 0.00 0.00 40.48 2.43
480 481 1.730451 GGAGTGGACGAGCCTCTAGC 61.730 65.000 0.00 0.00 40.48 3.42
493 494 3.793559 GCCTCTAGCTCATTTTTACGGA 58.206 45.455 0.00 0.00 38.99 4.69
494 495 3.804873 GCCTCTAGCTCATTTTTACGGAG 59.195 47.826 0.00 0.00 38.99 4.63
500 501 2.359900 CTCATTTTTACGGAGCAGGCT 58.640 47.619 0.00 0.00 0.00 4.58
501 502 3.531538 CTCATTTTTACGGAGCAGGCTA 58.468 45.455 0.00 0.00 0.00 3.93
502 503 3.938963 CTCATTTTTACGGAGCAGGCTAA 59.061 43.478 0.00 0.00 0.00 3.09
505 506 3.412237 TTTTACGGAGCAGGCTAAACT 57.588 42.857 0.00 0.00 0.00 2.66
506 507 4.540359 TTTTACGGAGCAGGCTAAACTA 57.460 40.909 0.00 0.00 0.00 2.24
507 508 4.540359 TTTACGGAGCAGGCTAAACTAA 57.460 40.909 0.00 0.00 0.00 2.24
508 509 2.674796 ACGGAGCAGGCTAAACTAAG 57.325 50.000 0.00 0.00 0.00 2.18
509 510 1.291132 CGGAGCAGGCTAAACTAAGC 58.709 55.000 0.00 0.00 41.99 3.09
514 515 2.010497 GCAGGCTAAACTAAGCTCCAC 58.990 52.381 0.00 0.00 42.37 4.02
516 517 3.674997 CAGGCTAAACTAAGCTCCACAA 58.325 45.455 0.00 0.00 42.37 3.33
517 518 4.072131 CAGGCTAAACTAAGCTCCACAAA 58.928 43.478 0.00 0.00 42.37 2.83
518 519 4.702131 CAGGCTAAACTAAGCTCCACAAAT 59.298 41.667 0.00 0.00 42.37 2.32
519 520 4.944317 AGGCTAAACTAAGCTCCACAAATC 59.056 41.667 0.00 0.00 42.37 2.17
520 521 4.096532 GGCTAAACTAAGCTCCACAAATCC 59.903 45.833 0.00 0.00 42.37 3.01
521 522 4.700213 GCTAAACTAAGCTCCACAAATCCA 59.300 41.667 0.00 0.00 39.50 3.41
522 523 5.358160 GCTAAACTAAGCTCCACAAATCCAT 59.642 40.000 0.00 0.00 39.50 3.41
523 524 5.649782 AAACTAAGCTCCACAAATCCATG 57.350 39.130 0.00 0.00 0.00 3.66
524 525 3.624777 ACTAAGCTCCACAAATCCATGG 58.375 45.455 4.97 4.97 37.32 3.66
525 526 2.905415 AAGCTCCACAAATCCATGGA 57.095 45.000 18.88 18.88 42.88 3.41
530 531 1.065491 TCCACAAATCCATGGAGTCGG 60.065 52.381 21.33 17.93 40.17 4.79
531 532 1.065491 CCACAAATCCATGGAGTCGGA 60.065 52.381 21.33 0.00 38.34 4.55
532 533 2.283298 CACAAATCCATGGAGTCGGAG 58.717 52.381 21.33 10.91 33.97 4.63
533 534 1.303309 CAAATCCATGGAGTCGGAGC 58.697 55.000 21.33 0.00 33.97 4.70
534 535 0.179073 AAATCCATGGAGTCGGAGCG 60.179 55.000 21.33 0.00 33.97 5.03
536 537 2.928988 ATCCATGGAGTCGGAGCGGA 62.929 60.000 21.33 0.00 33.97 5.54
538 539 1.300465 CATGGAGTCGGAGCGGATG 60.300 63.158 0.00 0.00 0.00 3.51
539 540 1.455773 ATGGAGTCGGAGCGGATGA 60.456 57.895 0.00 0.00 0.00 2.92
540 541 1.459455 ATGGAGTCGGAGCGGATGAG 61.459 60.000 0.00 0.00 0.00 2.90
543 544 0.039617 GAGTCGGAGCGGATGAGATG 60.040 60.000 0.00 0.00 0.00 2.90
544 545 1.006805 GTCGGAGCGGATGAGATGG 60.007 63.158 0.00 0.00 0.00 3.51
545 546 1.152756 TCGGAGCGGATGAGATGGA 60.153 57.895 0.00 0.00 0.00 3.41
546 547 0.540597 TCGGAGCGGATGAGATGGAT 60.541 55.000 0.00 0.00 0.00 3.41
548 549 1.671261 CGGAGCGGATGAGATGGATTC 60.671 57.143 0.00 0.00 0.00 2.52
549 550 1.338579 GGAGCGGATGAGATGGATTCC 60.339 57.143 0.00 0.00 0.00 3.01
554 555 3.475566 GGATGAGATGGATTCCGAACA 57.524 47.619 0.00 0.00 0.00 3.18
555 556 3.134458 GGATGAGATGGATTCCGAACAC 58.866 50.000 0.00 0.00 0.00 3.32
560 561 0.902531 ATGGATTCCGAACACGGTCT 59.097 50.000 8.46 0.00 45.96 3.85
562 563 2.104967 TGGATTCCGAACACGGTCTAT 58.895 47.619 8.46 1.92 45.96 1.98
563 564 2.159156 TGGATTCCGAACACGGTCTATG 60.159 50.000 8.46 0.00 45.96 2.23
564 565 2.159142 GGATTCCGAACACGGTCTATGT 60.159 50.000 8.46 0.00 45.96 2.29
566 567 4.261909 GGATTCCGAACACGGTCTATGTAT 60.262 45.833 8.46 0.00 45.96 2.29
567 568 5.048504 GGATTCCGAACACGGTCTATGTATA 60.049 44.000 8.46 0.00 45.96 1.47
568 569 5.428496 TTCCGAACACGGTCTATGTATAG 57.572 43.478 8.46 0.00 45.96 1.31
571 572 5.766670 TCCGAACACGGTCTATGTATAGAAT 59.233 40.000 8.46 0.00 45.96 2.40
575 576 7.520451 AACACGGTCTATGTATAGAATGCTA 57.480 36.000 3.30 0.00 40.77 3.49
577 578 8.123639 ACACGGTCTATGTATAGAATGCTATT 57.876 34.615 0.00 0.00 40.77 1.73
578 579 8.029522 ACACGGTCTATGTATAGAATGCTATTG 58.970 37.037 0.00 0.00 40.77 1.90
580 581 7.178628 ACGGTCTATGTATAGAATGCTATTGGT 59.821 37.037 0.00 0.00 40.77 3.67
582 583 8.754080 GGTCTATGTATAGAATGCTATTGGTCT 58.246 37.037 0.00 0.00 40.77 3.85
590 591 8.854614 ATAGAATGCTATTGGTCTTGATTACC 57.145 34.615 0.00 0.00 33.54 2.85
591 592 5.760253 AGAATGCTATTGGTCTTGATTACCG 59.240 40.000 0.00 0.00 40.08 4.02
592 593 4.481368 TGCTATTGGTCTTGATTACCGT 57.519 40.909 0.00 0.00 40.08 4.83
593 594 4.188462 TGCTATTGGTCTTGATTACCGTG 58.812 43.478 0.00 0.00 40.08 4.94
594 595 4.189231 GCTATTGGTCTTGATTACCGTGT 58.811 43.478 0.00 0.00 40.08 4.49
595 596 4.034048 GCTATTGGTCTTGATTACCGTGTG 59.966 45.833 0.00 0.00 40.08 3.82
596 597 3.755112 TTGGTCTTGATTACCGTGTGA 57.245 42.857 0.00 0.00 40.08 3.58
598 599 3.595173 TGGTCTTGATTACCGTGTGATG 58.405 45.455 0.00 0.00 40.08 3.07
599 600 3.259625 TGGTCTTGATTACCGTGTGATGA 59.740 43.478 0.00 0.00 40.08 2.92
600 601 3.865745 GGTCTTGATTACCGTGTGATGAG 59.134 47.826 0.00 0.00 0.00 2.90
601 602 4.381612 GGTCTTGATTACCGTGTGATGAGA 60.382 45.833 0.00 0.00 0.00 3.27
602 603 4.800993 GTCTTGATTACCGTGTGATGAGAG 59.199 45.833 0.00 0.00 0.00 3.20
603 604 4.705023 TCTTGATTACCGTGTGATGAGAGA 59.295 41.667 0.00 0.00 0.00 3.10
604 605 5.185056 TCTTGATTACCGTGTGATGAGAGAA 59.815 40.000 0.00 0.00 0.00 2.87
606 607 5.789521 TGATTACCGTGTGATGAGAGAAAA 58.210 37.500 0.00 0.00 0.00 2.29
607 608 6.406370 TGATTACCGTGTGATGAGAGAAAAT 58.594 36.000 0.00 0.00 0.00 1.82
608 609 7.552459 TGATTACCGTGTGATGAGAGAAAATA 58.448 34.615 0.00 0.00 0.00 1.40
609 610 8.204160 TGATTACCGTGTGATGAGAGAAAATAT 58.796 33.333 0.00 0.00 0.00 1.28
610 611 8.964476 ATTACCGTGTGATGAGAGAAAATATT 57.036 30.769 0.00 0.00 0.00 1.28
611 612 8.786826 TTACCGTGTGATGAGAGAAAATATTT 57.213 30.769 0.00 0.00 0.00 1.40
612 613 7.687941 ACCGTGTGATGAGAGAAAATATTTT 57.312 32.000 13.24 13.24 0.00 1.82
614 615 9.226606 ACCGTGTGATGAGAGAAAATATTTTAA 57.773 29.630 13.34 0.00 0.00 1.52
683 1719 8.611654 TTAAACCTAAACATACACTCTTCACC 57.388 34.615 0.00 0.00 0.00 4.02
684 1720 4.817517 ACCTAAACATACACTCTTCACCG 58.182 43.478 0.00 0.00 0.00 4.94
685 1721 4.181578 CCTAAACATACACTCTTCACCGG 58.818 47.826 0.00 0.00 0.00 5.28
686 1722 4.081862 CCTAAACATACACTCTTCACCGGA 60.082 45.833 9.46 0.00 0.00 5.14
687 1723 3.594603 AACATACACTCTTCACCGGAG 57.405 47.619 9.46 0.00 36.92 4.63
714 2732 3.401589 GGGAGTAGAGTACTTCCCCTT 57.598 52.381 16.76 0.00 46.93 3.95
715 2733 3.298619 GGGAGTAGAGTACTTCCCCTTC 58.701 54.545 16.76 1.79 46.93 3.46
774 2793 2.299867 GGTTTGACAACAAGCCCATCAT 59.700 45.455 0.00 0.00 46.74 2.45
775 2794 3.578688 GTTTGACAACAAGCCCATCATC 58.421 45.455 0.00 0.00 37.32 2.92
776 2795 2.583024 TGACAACAAGCCCATCATCA 57.417 45.000 0.00 0.00 0.00 3.07
810 2830 0.036671 AAGGTAGTTGGCGCCAGTAC 60.037 55.000 30.75 30.16 0.00 2.73
873 2893 1.003003 GCTCAAGCCTCTCCTCAAGTT 59.997 52.381 0.00 0.00 34.31 2.66
874 2894 2.934801 GCTCAAGCCTCTCCTCAAGTTC 60.935 54.545 0.00 0.00 34.31 3.01
893 2913 3.351794 TCTTCTCCGTGAGCTCTCTTA 57.648 47.619 16.19 1.22 0.00 2.10
894 2914 3.892284 TCTTCTCCGTGAGCTCTCTTAT 58.108 45.455 16.19 0.00 0.00 1.73
942 2962 0.716108 GTCTGTTGCTCGATCGGTTG 59.284 55.000 16.41 7.26 0.00 3.77
970 2990 4.130118 GCCTTCACCATTAGTACATCCAG 58.870 47.826 0.00 0.00 0.00 3.86
975 2995 3.068165 CACCATTAGTACATCCAGCTCGA 59.932 47.826 0.00 0.00 0.00 4.04
976 2996 3.319405 ACCATTAGTACATCCAGCTCGAG 59.681 47.826 8.45 8.45 0.00 4.04
1186 3236 4.379243 CCGGCTCGAACCTGCACT 62.379 66.667 2.88 0.00 0.00 4.40
1207 3257 0.101399 CTTCACATACGCCGAGCTCT 59.899 55.000 12.85 0.00 0.00 4.09
1285 3335 2.992689 TCTACAAGGGCGCCGTCA 60.993 61.111 23.85 9.86 0.00 4.35
1402 3452 4.492955 CGAAGCAGAGTCCTGAGC 57.507 61.111 0.00 0.00 43.02 4.26
1403 3453 1.889454 CGAAGCAGAGTCCTGAGCT 59.111 57.895 0.00 0.00 43.02 4.09
1404 3454 0.179140 CGAAGCAGAGTCCTGAGCTC 60.179 60.000 6.82 6.82 43.02 4.09
1412 3530 0.754957 AGTCCTGAGCTCCTGATCGG 60.755 60.000 12.15 0.00 34.94 4.18
1432 3551 2.162208 GGTCAAATGCTTGCGAGATTGA 59.838 45.455 4.70 8.93 32.14 2.57
1433 3552 3.181493 GGTCAAATGCTTGCGAGATTGAT 60.181 43.478 15.88 0.00 32.14 2.57
1434 3553 4.418392 GTCAAATGCTTGCGAGATTGATT 58.582 39.130 15.88 2.69 32.14 2.57
1459 3579 0.179134 GGCTGCTAACTGACGACGAT 60.179 55.000 0.00 0.00 0.00 3.73
1466 3586 6.089920 TGCTAACTGACGACGATTATTTTG 57.910 37.500 0.00 0.00 0.00 2.44
1467 3587 5.636121 TGCTAACTGACGACGATTATTTTGT 59.364 36.000 0.00 0.00 0.00 2.83
1522 3643 2.810400 GCAACTGAGGCACAAGAACCTA 60.810 50.000 0.00 0.00 36.05 3.08
1676 3885 9.570488 TGTTAACTTAATTAAAAGTTTGCACGT 57.430 25.926 10.76 0.00 45.20 4.49
1746 3956 7.095695 TCTCTGTTTCCTTTTTGTTAAGTGG 57.904 36.000 0.00 0.00 0.00 4.00
1747 3957 6.096282 TCTCTGTTTCCTTTTTGTTAAGTGGG 59.904 38.462 0.00 0.00 0.00 4.61
1750 3960 5.484290 TGTTTCCTTTTTGTTAAGTGGGGAA 59.516 36.000 0.00 0.00 0.00 3.97
1753 4109 3.323691 CCTTTTTGTTAAGTGGGGAAGGG 59.676 47.826 0.00 0.00 31.13 3.95
1815 4172 5.924254 CGTAACTGACAAGAAACATCCTACA 59.076 40.000 0.00 0.00 0.00 2.74
1830 4191 7.060383 ACATCCTACAATCTTCAGGTATCAG 57.940 40.000 0.00 0.00 0.00 2.90
1957 4318 1.745141 GCCTCCAACATCTTGCTCGAT 60.745 52.381 0.00 0.00 0.00 3.59
1975 4336 0.462789 ATTCGGTAAGCCACCCGTAG 59.537 55.000 5.58 0.00 45.52 3.51
1995 4356 4.907879 AGTCTTCAGGCTTTTTCAGTTG 57.092 40.909 0.00 0.00 0.00 3.16
2019 4380 5.204833 CAACACTAAACTGAAATGTCACCG 58.795 41.667 0.00 0.00 0.00 4.94
2052 4414 1.153823 CACGTCGTCACCTCCCATC 60.154 63.158 0.00 0.00 0.00 3.51
2057 4419 0.541998 TCGTCACCTCCCATCACTGT 60.542 55.000 0.00 0.00 0.00 3.55
2169 4564 4.947645 TGCTTTTTGAGTCCTCATTTTGG 58.052 39.130 0.00 0.00 39.64 3.28
2176 4571 3.822735 TGAGTCCTCATTTTGGAAGCTTG 59.177 43.478 2.10 0.00 35.10 4.01
2188 4583 9.113838 CATTTTGGAAGCTTGTAGTCATATAGT 57.886 33.333 2.10 0.00 0.00 2.12
2196 4591 5.760253 GCTTGTAGTCATATAGTTGGCACAT 59.240 40.000 0.00 0.00 39.30 3.21
2275 4670 1.694169 CAGTCTGCCCTACCCCCAT 60.694 63.158 0.00 0.00 0.00 4.00
2318 4713 6.607600 TGAAACATAGCTACCTATCACTGTCT 59.392 38.462 0.00 0.00 31.92 3.41
2353 4748 7.380423 AATAGATACCCTGCAAAGTGTAGAT 57.620 36.000 0.00 0.00 31.36 1.98
2448 4844 9.626045 CCTAACCAAATTTGAACTTCTGTTATC 57.374 33.333 19.86 0.00 36.39 1.75
2650 5046 2.374184 CTCCTCTCAGGACGACAATCT 58.626 52.381 0.00 0.00 40.06 2.40
2680 5076 0.944311 CACGACGACCAAGGGAACAG 60.944 60.000 0.00 0.00 0.00 3.16
2717 5113 0.756903 TAGGCCCTATCTCAAACGGC 59.243 55.000 0.00 0.00 38.96 5.68
2935 5331 2.673893 CACCATCGTTGTCGAGGATGAA 60.674 50.000 19.97 0.00 43.03 2.57
3030 5426 3.553508 CGACATAAATACCCCGAATCGGT 60.554 47.826 21.12 5.43 46.80 4.69
3039 5435 0.392706 CCCGAATCGGTGATCCATGA 59.607 55.000 21.12 0.00 46.80 3.07
3079 5475 1.525995 CAACAGACAGGTTGCCGGT 60.526 57.895 1.90 0.00 41.37 5.28
3112 5508 4.680237 CGGCGGCAACAGAGGACA 62.680 66.667 10.53 0.00 0.00 4.02
3113 5509 3.050275 GGCGGCAACAGAGGACAC 61.050 66.667 3.07 0.00 0.00 3.67
3143 5539 1.527370 CGGGAAAGAGGGGCTTAGG 59.473 63.158 0.00 0.00 35.24 2.69
3161 5562 6.069994 GCTTAGGAGTTAGGAGTATGGTAGT 58.930 44.000 0.00 0.00 0.00 2.73
3256 5659 7.033530 TCGTTTGTTTAGAAATTGTGGATGT 57.966 32.000 0.00 0.00 0.00 3.06
3302 5705 5.590530 AGTGGCAAACATACAAAAGTTCA 57.409 34.783 0.00 0.00 0.00 3.18
3331 5734 3.971245 TTTGGCCAAGTTTGTTGTTCT 57.029 38.095 19.48 0.00 0.00 3.01
3352 5755 8.738106 TGTTCTAATATGTGTGCAAATGAATGA 58.262 29.630 0.00 0.00 0.00 2.57
3361 5764 6.262944 TGTGTGCAAATGAATGAGTCTACTTT 59.737 34.615 0.00 0.00 0.00 2.66
3362 5765 7.141363 GTGTGCAAATGAATGAGTCTACTTTT 58.859 34.615 0.00 0.00 0.00 2.27
3363 5766 7.649306 GTGTGCAAATGAATGAGTCTACTTTTT 59.351 33.333 0.00 0.00 0.00 1.94
3389 5792 3.381908 CGGGCTAAATGACTGAGTCTACT 59.618 47.826 14.42 0.46 33.15 2.57
3397 5800 2.164422 TGACTGAGTCTACTTGATGCCG 59.836 50.000 14.42 0.00 33.15 5.69
3407 5810 0.040336 CTTGATGCCGCATGCTCATC 60.040 55.000 28.32 28.32 42.00 2.92
3408 5811 0.464916 TTGATGCCGCATGCTCATCT 60.465 50.000 31.52 13.77 42.00 2.90
3424 6093 7.281040 TGCTCATCTCTTTCACTTTCAAATT 57.719 32.000 0.00 0.00 0.00 1.82
3435 6104 5.415221 TCACTTTCAAATTGTTGGTCCAAC 58.585 37.500 25.37 25.37 43.78 3.77
3462 6131 3.302365 AATCGTTGGCAAGTGAATTGG 57.698 42.857 0.00 0.00 39.47 3.16
3467 6136 5.004448 TCGTTGGCAAGTGAATTGGTAATA 58.996 37.500 0.00 0.00 39.47 0.98
3474 6143 6.767902 GGCAAGTGAATTGGTAATATGAGAGA 59.232 38.462 0.00 0.00 39.47 3.10
3555 6307 5.403466 GCAAGACCACAAGTTGAAATTGATC 59.597 40.000 12.62 6.64 0.00 2.92
3562 6314 4.161333 CAAGTTGAAATTGATCGCCTCAC 58.839 43.478 0.00 0.00 32.17 3.51
3577 6329 3.935203 CGCCTCACTTAATGATGTCAAGT 59.065 43.478 0.00 0.00 36.48 3.16
3596 6348 2.843730 AGTTGGATAGGGCATGTACACA 59.156 45.455 0.00 0.00 0.00 3.72
3604 6356 1.750206 GGGCATGTACACATTGCATCA 59.250 47.619 18.84 0.00 33.61 3.07
3644 6413 1.376424 CCTGGCAGCATCTTCGTGT 60.376 57.895 9.56 0.00 0.00 4.49
3656 6425 0.315869 CTTCGTGTCGTTTTTGCGCT 60.316 50.000 9.73 0.00 0.00 5.92
3657 6426 0.097325 TTCGTGTCGTTTTTGCGCTT 59.903 45.000 9.73 0.00 0.00 4.68
3682 6451 6.546972 TTTTGGTTTTGGTTTCTGTTGTTC 57.453 33.333 0.00 0.00 0.00 3.18
3686 6455 4.239304 GTTTTGGTTTCTGTTGTTCGGTT 58.761 39.130 0.00 0.00 0.00 4.44
3693 6462 5.158494 GTTTCTGTTGTTCGGTTTTCTTGT 58.842 37.500 0.00 0.00 0.00 3.16
3740 6509 9.774742 GAGCTTTCTTGTGAATTTATATCGTTT 57.225 29.630 0.00 0.00 31.56 3.60
3762 6531 6.707440 TTGGATGTGTACTTTGATTGTTGT 57.293 33.333 0.00 0.00 0.00 3.32
3767 6536 8.964150 GGATGTGTACTTTGATTGTTGTTTTAC 58.036 33.333 0.00 0.00 0.00 2.01
3800 6570 9.843334 ACTGAAGTAAAAACGTAATTCAAAACA 57.157 25.926 1.24 0.00 37.55 2.83
3854 6632 5.793030 AAATACTGCCGCTAGTATCTCTT 57.207 39.130 12.81 5.10 41.70 2.85
3855 6633 6.896021 AAATACTGCCGCTAGTATCTCTTA 57.104 37.500 12.81 0.00 41.70 2.10
3856 6634 5.883503 ATACTGCCGCTAGTATCTCTTAC 57.116 43.478 8.72 0.00 39.10 2.34
3857 6635 2.548904 ACTGCCGCTAGTATCTCTTACG 59.451 50.000 0.00 0.00 35.84 3.18
3858 6636 2.806818 CTGCCGCTAGTATCTCTTACGA 59.193 50.000 0.00 0.00 35.84 3.43
3881 6662 1.894466 AGATCGATCAGGATCAGCTGG 59.106 52.381 26.47 0.00 44.21 4.85
3882 6663 1.617850 GATCGATCAGGATCAGCTGGT 59.382 52.381 20.52 6.50 41.93 4.00
3891 6672 2.042162 AGGATCAGCTGGTCAATTTGGT 59.958 45.455 27.65 0.87 0.00 3.67
3896 6677 2.886523 CAGCTGGTCAATTTGGTCAAGA 59.113 45.455 5.57 0.00 0.00 3.02
3969 6750 6.591750 TTCTGTCTCCTACAAGAAACCTAG 57.408 41.667 0.00 0.00 37.74 3.02
3988 6769 5.181748 CCTAGACTCCAGTCCAAAATTCTG 58.818 45.833 2.96 0.00 45.85 3.02
3990 6771 2.154462 ACTCCAGTCCAAAATTCTGCG 58.846 47.619 0.00 0.00 0.00 5.18
4001 6782 5.814705 TCCAAAATTCTGCGAAACAAAACAT 59.185 32.000 0.00 0.00 0.00 2.71
4002 6783 6.980978 TCCAAAATTCTGCGAAACAAAACATA 59.019 30.769 0.00 0.00 0.00 2.29
4008 6789 9.691362 AATTCTGCGAAACAAAACATAAATAGT 57.309 25.926 0.00 0.00 0.00 2.12
4011 6792 8.346300 TCTGCGAAACAAAACATAAATAGTCAA 58.654 29.630 0.00 0.00 0.00 3.18
4016 6797 5.705902 ACAAAACATAAATAGTCAACGGCC 58.294 37.500 0.00 0.00 0.00 6.13
4037 6818 4.804665 GCCGGTAGAAACTAGAGTCATTTC 59.195 45.833 1.90 0.00 33.40 2.17
4046 6827 6.365970 AACTAGAGTCATTTCCATGTCAGT 57.634 37.500 0.00 0.00 0.00 3.41
4050 6831 4.220821 AGAGTCATTTCCATGTCAGTACGT 59.779 41.667 0.00 0.00 0.00 3.57
4051 6832 5.417894 AGAGTCATTTCCATGTCAGTACGTA 59.582 40.000 0.00 0.00 0.00 3.57
4052 6833 6.096987 AGAGTCATTTCCATGTCAGTACGTAT 59.903 38.462 0.00 0.00 0.00 3.06
4053 6834 6.273825 AGTCATTTCCATGTCAGTACGTATC 58.726 40.000 0.00 0.00 0.00 2.24
4054 6835 6.040247 GTCATTTCCATGTCAGTACGTATCA 58.960 40.000 0.00 0.00 0.00 2.15
4055 6836 6.701841 GTCATTTCCATGTCAGTACGTATCAT 59.298 38.462 0.00 0.00 0.00 2.45
4056 6837 6.701400 TCATTTCCATGTCAGTACGTATCATG 59.299 38.462 17.66 17.66 36.60 3.07
4058 6839 3.059884 CCATGTCAGTACGTATCATGGC 58.940 50.000 24.41 15.98 45.37 4.40
4059 6840 3.243873 CCATGTCAGTACGTATCATGGCT 60.244 47.826 24.41 7.06 45.37 4.75
4060 6841 4.022329 CCATGTCAGTACGTATCATGGCTA 60.022 45.833 24.41 9.80 45.37 3.93
4061 6842 5.508994 CCATGTCAGTACGTATCATGGCTAA 60.509 44.000 24.41 6.07 45.37 3.09
4062 6843 5.585820 TGTCAGTACGTATCATGGCTAAA 57.414 39.130 0.00 0.00 0.00 1.85
4063 6844 5.345702 TGTCAGTACGTATCATGGCTAAAC 58.654 41.667 0.00 0.00 0.00 2.01
4064 6845 5.126545 TGTCAGTACGTATCATGGCTAAACT 59.873 40.000 0.00 0.00 0.00 2.66
4065 6846 5.686397 GTCAGTACGTATCATGGCTAAACTC 59.314 44.000 0.00 0.00 0.00 3.01
4066 6847 5.358725 TCAGTACGTATCATGGCTAAACTCA 59.641 40.000 0.00 0.00 0.00 3.41
4067 6848 5.459107 CAGTACGTATCATGGCTAAACTCAC 59.541 44.000 0.00 0.00 0.00 3.51
4068 6849 4.465632 ACGTATCATGGCTAAACTCACA 57.534 40.909 0.00 0.00 0.00 3.58
4069 6850 5.023533 ACGTATCATGGCTAAACTCACAT 57.976 39.130 0.00 0.00 0.00 3.21
4070 6851 4.811024 ACGTATCATGGCTAAACTCACATG 59.189 41.667 0.00 0.00 41.44 3.21
4071 6852 4.212004 CGTATCATGGCTAAACTCACATGG 59.788 45.833 0.00 0.00 40.69 3.66
4072 6853 3.719268 TCATGGCTAAACTCACATGGT 57.281 42.857 0.00 0.00 40.69 3.55
4073 6854 3.346315 TCATGGCTAAACTCACATGGTG 58.654 45.455 0.00 0.00 40.69 4.17
4074 6855 2.949177 TGGCTAAACTCACATGGTGT 57.051 45.000 0.00 0.00 34.79 4.16
4075 6856 2.778299 TGGCTAAACTCACATGGTGTC 58.222 47.619 0.00 0.00 34.79 3.67
4076 6857 2.105649 TGGCTAAACTCACATGGTGTCA 59.894 45.455 0.00 0.00 34.79 3.58
4077 6858 2.484264 GGCTAAACTCACATGGTGTCAC 59.516 50.000 0.00 0.00 34.79 3.67
4078 6859 2.157668 GCTAAACTCACATGGTGTCACG 59.842 50.000 0.00 0.00 34.79 4.35
4079 6860 0.944386 AAACTCACATGGTGTCACGC 59.056 50.000 0.00 0.00 34.79 5.34
4080 6861 0.884704 AACTCACATGGTGTCACGCC 60.885 55.000 0.00 0.00 34.79 5.68
4081 6862 2.031919 TCACATGGTGTCACGCCC 59.968 61.111 4.51 0.00 34.79 6.13
4082 6863 2.281414 CACATGGTGTCACGCCCA 60.281 61.111 4.51 0.00 32.22 5.36
4083 6864 2.032528 ACATGGTGTCACGCCCAG 59.967 61.111 4.51 0.00 33.39 4.45
4084 6865 3.434319 CATGGTGTCACGCCCAGC 61.434 66.667 4.51 0.00 33.39 4.85
4085 6866 3.952508 ATGGTGTCACGCCCAGCA 61.953 61.111 4.51 4.30 43.63 4.41
4086 6867 3.907260 ATGGTGTCACGCCCAGCAG 62.907 63.158 4.51 0.00 42.85 4.24
4103 6884 3.244105 GCGTTGTGCTGTCATCGT 58.756 55.556 0.00 0.00 41.73 3.73
4104 6885 1.569493 GCGTTGTGCTGTCATCGTT 59.431 52.632 0.00 0.00 41.73 3.85
4105 6886 0.041312 GCGTTGTGCTGTCATCGTTT 60.041 50.000 0.00 0.00 41.73 3.60
4106 6887 1.937359 CGTTGTGCTGTCATCGTTTC 58.063 50.000 0.00 0.00 0.00 2.78
4107 6888 1.526887 CGTTGTGCTGTCATCGTTTCT 59.473 47.619 0.00 0.00 0.00 2.52
4108 6889 2.032894 CGTTGTGCTGTCATCGTTTCTT 60.033 45.455 0.00 0.00 0.00 2.52
4109 6890 3.183574 CGTTGTGCTGTCATCGTTTCTTA 59.816 43.478 0.00 0.00 0.00 2.10
4110 6891 4.318475 CGTTGTGCTGTCATCGTTTCTTAA 60.318 41.667 0.00 0.00 0.00 1.85
4111 6892 5.614668 CGTTGTGCTGTCATCGTTTCTTAAT 60.615 40.000 0.00 0.00 0.00 1.40
4112 6893 5.530519 TGTGCTGTCATCGTTTCTTAATC 57.469 39.130 0.00 0.00 0.00 1.75
4113 6894 4.391830 TGTGCTGTCATCGTTTCTTAATCC 59.608 41.667 0.00 0.00 0.00 3.01
4114 6895 4.391830 GTGCTGTCATCGTTTCTTAATCCA 59.608 41.667 0.00 0.00 0.00 3.41
4115 6896 5.065218 GTGCTGTCATCGTTTCTTAATCCAT 59.935 40.000 0.00 0.00 0.00 3.41
4116 6897 6.257849 GTGCTGTCATCGTTTCTTAATCCATA 59.742 38.462 0.00 0.00 0.00 2.74
4117 6898 6.257849 TGCTGTCATCGTTTCTTAATCCATAC 59.742 38.462 0.00 0.00 0.00 2.39
4118 6899 6.480320 GCTGTCATCGTTTCTTAATCCATACT 59.520 38.462 0.00 0.00 0.00 2.12
4119 6900 7.652105 GCTGTCATCGTTTCTTAATCCATACTA 59.348 37.037 0.00 0.00 0.00 1.82
4120 6901 9.186323 CTGTCATCGTTTCTTAATCCATACTAG 57.814 37.037 0.00 0.00 0.00 2.57
4121 6902 8.909923 TGTCATCGTTTCTTAATCCATACTAGA 58.090 33.333 0.00 0.00 0.00 2.43
4122 6903 9.745880 GTCATCGTTTCTTAATCCATACTAGAA 57.254 33.333 0.00 0.00 0.00 2.10
4123 6904 9.967346 TCATCGTTTCTTAATCCATACTAGAAG 57.033 33.333 0.00 0.00 0.00 2.85
4124 6905 9.197694 CATCGTTTCTTAATCCATACTAGAAGG 57.802 37.037 0.00 0.00 0.00 3.46
4125 6906 8.529424 TCGTTTCTTAATCCATACTAGAAGGA 57.471 34.615 0.00 0.47 35.59 3.36
4126 6907 9.144298 TCGTTTCTTAATCCATACTAGAAGGAT 57.856 33.333 0.00 3.11 43.77 3.24
4132 6913 5.730296 ATCCATACTAGAAGGATTGGACG 57.270 43.478 0.00 0.00 39.02 4.79
4133 6914 3.321111 TCCATACTAGAAGGATTGGACGC 59.679 47.826 0.00 0.00 0.00 5.19
4134 6915 3.309388 CATACTAGAAGGATTGGACGCG 58.691 50.000 3.53 3.53 0.00 6.01
4135 6916 0.179108 ACTAGAAGGATTGGACGCGC 60.179 55.000 5.73 0.00 0.00 6.86
4136 6917 0.103208 CTAGAAGGATTGGACGCGCT 59.897 55.000 5.73 0.00 0.00 5.92
4137 6918 0.535335 TAGAAGGATTGGACGCGCTT 59.465 50.000 5.73 0.00 0.00 4.68
4138 6919 0.321653 AGAAGGATTGGACGCGCTTT 60.322 50.000 5.73 0.00 0.00 3.51
4139 6920 0.179189 GAAGGATTGGACGCGCTTTG 60.179 55.000 5.73 0.00 0.00 2.77
4140 6921 2.200170 AAGGATTGGACGCGCTTTGC 62.200 55.000 5.73 0.00 41.47 3.68
4141 6922 2.690778 GGATTGGACGCGCTTTGCT 61.691 57.895 5.73 0.00 43.27 3.91
4142 6923 1.512734 GATTGGACGCGCTTTGCTG 60.513 57.895 5.73 0.00 43.27 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.954258 CTCCATTCTGGTTTATTGGTCCC 59.046 47.826 0.00 0.00 39.03 4.46
18 19 7.490657 ACATAAAACTACCACTGTATCTCCA 57.509 36.000 0.00 0.00 0.00 3.86
21 22 9.043548 ACCTTACATAAAACTACCACTGTATCT 57.956 33.333 0.00 0.00 0.00 1.98
23 24 9.662947 GAACCTTACATAAAACTACCACTGTAT 57.337 33.333 0.00 0.00 0.00 2.29
25 26 7.742767 AGAACCTTACATAAAACTACCACTGT 58.257 34.615 0.00 0.00 0.00 3.55
26 27 7.063074 CGAGAACCTTACATAAAACTACCACTG 59.937 40.741 0.00 0.00 0.00 3.66
27 28 7.095270 CGAGAACCTTACATAAAACTACCACT 58.905 38.462 0.00 0.00 0.00 4.00
28 29 6.870439 ACGAGAACCTTACATAAAACTACCAC 59.130 38.462 0.00 0.00 0.00 4.16
29 30 6.996509 ACGAGAACCTTACATAAAACTACCA 58.003 36.000 0.00 0.00 0.00 3.25
30 31 7.704047 CCTACGAGAACCTTACATAAAACTACC 59.296 40.741 0.00 0.00 0.00 3.18
31 32 8.246871 ACCTACGAGAACCTTACATAAAACTAC 58.753 37.037 0.00 0.00 0.00 2.73
32 33 8.246180 CACCTACGAGAACCTTACATAAAACTA 58.754 37.037 0.00 0.00 0.00 2.24
33 34 7.095270 CACCTACGAGAACCTTACATAAAACT 58.905 38.462 0.00 0.00 0.00 2.66
34 35 6.870439 ACACCTACGAGAACCTTACATAAAAC 59.130 38.462 0.00 0.00 0.00 2.43
35 36 6.996509 ACACCTACGAGAACCTTACATAAAA 58.003 36.000 0.00 0.00 0.00 1.52
148 149 4.045022 TCTATAAACCAGAAAGGAGGGGG 58.955 47.826 0.00 0.00 41.22 5.40
149 150 4.445019 GCTCTATAAACCAGAAAGGAGGGG 60.445 50.000 0.00 0.00 41.22 4.79
150 151 4.410555 AGCTCTATAAACCAGAAAGGAGGG 59.589 45.833 0.00 0.00 41.22 4.30
151 152 5.622346 AGCTCTATAAACCAGAAAGGAGG 57.378 43.478 0.00 0.00 41.22 4.30
152 153 8.646900 AGATAAGCTCTATAAACCAGAAAGGAG 58.353 37.037 0.00 0.00 34.56 3.69
153 154 8.554490 AGATAAGCTCTATAAACCAGAAAGGA 57.446 34.615 0.00 0.00 34.56 3.36
184 185 8.354711 AGCCCTTTAAATTGGAAAAACAAAAA 57.645 26.923 7.84 0.00 33.48 1.94
186 187 7.112779 TGAGCCCTTTAAATTGGAAAAACAAA 58.887 30.769 7.84 0.00 33.48 2.83
187 188 6.653989 TGAGCCCTTTAAATTGGAAAAACAA 58.346 32.000 7.84 0.00 34.41 2.83
188 189 6.240549 TGAGCCCTTTAAATTGGAAAAACA 57.759 33.333 7.84 0.00 0.00 2.83
189 190 7.744087 AATGAGCCCTTTAAATTGGAAAAAC 57.256 32.000 7.84 0.00 0.00 2.43
190 191 8.759481 AAAATGAGCCCTTTAAATTGGAAAAA 57.241 26.923 7.84 0.00 0.00 1.94
191 192 7.995488 TGAAAATGAGCCCTTTAAATTGGAAAA 59.005 29.630 7.84 0.00 0.00 2.29
192 193 7.512992 TGAAAATGAGCCCTTTAAATTGGAAA 58.487 30.769 7.84 0.00 0.00 3.13
193 194 7.072263 TGAAAATGAGCCCTTTAAATTGGAA 57.928 32.000 7.84 0.00 0.00 3.53
194 195 6.678568 TGAAAATGAGCCCTTTAAATTGGA 57.321 33.333 7.84 0.00 0.00 3.53
196 197 8.036575 TGAGATGAAAATGAGCCCTTTAAATTG 58.963 33.333 0.00 0.00 0.00 2.32
197 198 8.137745 TGAGATGAAAATGAGCCCTTTAAATT 57.862 30.769 0.00 0.00 0.00 1.82
198 199 7.722949 TGAGATGAAAATGAGCCCTTTAAAT 57.277 32.000 0.00 0.00 0.00 1.40
199 200 7.178983 ACATGAGATGAAAATGAGCCCTTTAAA 59.821 33.333 0.00 0.00 0.00 1.52
200 201 6.664816 ACATGAGATGAAAATGAGCCCTTTAA 59.335 34.615 0.00 0.00 0.00 1.52
201 202 6.189859 ACATGAGATGAAAATGAGCCCTTTA 58.810 36.000 0.00 0.00 0.00 1.85
202 203 5.021458 ACATGAGATGAAAATGAGCCCTTT 58.979 37.500 0.00 0.00 0.00 3.11
203 204 4.607239 ACATGAGATGAAAATGAGCCCTT 58.393 39.130 0.00 0.00 0.00 3.95
204 205 4.246712 ACATGAGATGAAAATGAGCCCT 57.753 40.909 0.00 0.00 0.00 5.19
205 206 4.996788 AACATGAGATGAAAATGAGCCC 57.003 40.909 0.00 0.00 0.00 5.19
206 207 7.093322 ACTAAACATGAGATGAAAATGAGCC 57.907 36.000 0.00 0.00 0.00 4.70
207 208 8.976986 AAACTAAACATGAGATGAAAATGAGC 57.023 30.769 0.00 0.00 0.00 4.26
212 213 8.786898 CCTCAGAAACTAAACATGAGATGAAAA 58.213 33.333 0.00 0.00 39.80 2.29
213 214 7.094634 GCCTCAGAAACTAAACATGAGATGAAA 60.095 37.037 0.00 0.00 39.80 2.69
214 215 6.372659 GCCTCAGAAACTAAACATGAGATGAA 59.627 38.462 0.00 0.00 39.80 2.57
215 216 5.877012 GCCTCAGAAACTAAACATGAGATGA 59.123 40.000 0.00 0.00 39.80 2.92
216 217 5.220548 CGCCTCAGAAACTAAACATGAGATG 60.221 44.000 0.00 0.00 39.80 2.90
217 218 4.872691 CGCCTCAGAAACTAAACATGAGAT 59.127 41.667 0.00 0.00 39.80 2.75
218 219 4.245660 CGCCTCAGAAACTAAACATGAGA 58.754 43.478 0.00 0.00 39.80 3.27
219 220 3.181516 GCGCCTCAGAAACTAAACATGAG 60.182 47.826 0.00 0.00 37.68 2.90
220 221 2.742053 GCGCCTCAGAAACTAAACATGA 59.258 45.455 0.00 0.00 0.00 3.07
221 222 2.483877 TGCGCCTCAGAAACTAAACATG 59.516 45.455 4.18 0.00 0.00 3.21
222 223 2.778299 TGCGCCTCAGAAACTAAACAT 58.222 42.857 4.18 0.00 0.00 2.71
223 224 2.248280 TGCGCCTCAGAAACTAAACA 57.752 45.000 4.18 0.00 0.00 2.83
224 225 3.831715 AATGCGCCTCAGAAACTAAAC 57.168 42.857 4.18 0.00 0.00 2.01
225 226 5.950758 TTTAATGCGCCTCAGAAACTAAA 57.049 34.783 4.18 0.00 0.00 1.85
226 227 6.509418 AATTTAATGCGCCTCAGAAACTAA 57.491 33.333 4.18 0.00 0.00 2.24
227 228 6.509418 AAATTTAATGCGCCTCAGAAACTA 57.491 33.333 4.18 0.00 0.00 2.24
228 229 5.391312 AAATTTAATGCGCCTCAGAAACT 57.609 34.783 4.18 0.00 0.00 2.66
229 230 6.298853 CAAAAATTTAATGCGCCTCAGAAAC 58.701 36.000 4.18 0.00 0.00 2.78
230 231 5.107143 GCAAAAATTTAATGCGCCTCAGAAA 60.107 36.000 4.18 0.00 0.00 2.52
231 232 4.388469 GCAAAAATTTAATGCGCCTCAGAA 59.612 37.500 4.18 0.00 0.00 3.02
232 233 3.925913 GCAAAAATTTAATGCGCCTCAGA 59.074 39.130 4.18 0.00 0.00 3.27
233 234 3.679025 TGCAAAAATTTAATGCGCCTCAG 59.321 39.130 18.54 0.00 42.91 3.35
234 235 3.657634 TGCAAAAATTTAATGCGCCTCA 58.342 36.364 18.54 4.04 42.91 3.86
235 236 4.580528 CATGCAAAAATTTAATGCGCCTC 58.419 39.130 18.54 0.37 42.91 4.70
236 237 3.181508 GCATGCAAAAATTTAATGCGCCT 60.182 39.130 14.21 0.00 42.91 5.52
237 238 3.100089 GCATGCAAAAATTTAATGCGCC 58.900 40.909 14.21 9.43 42.91 6.53
238 239 3.744987 TGCATGCAAAAATTTAATGCGC 58.255 36.364 20.30 16.95 42.91 6.09
239 240 5.619513 TCTTGCATGCAAAAATTTAATGCG 58.380 33.333 31.37 16.32 42.91 4.73
240 241 8.455598 AATTCTTGCATGCAAAAATTTAATGC 57.544 26.923 30.14 17.54 34.17 3.56
269 270 6.722328 TGGGTTTAAAAAGGATGGTGTTTTT 58.278 32.000 0.00 0.00 38.89 1.94
270 271 6.314899 TGGGTTTAAAAAGGATGGTGTTTT 57.685 33.333 0.00 0.00 0.00 2.43
271 272 5.959583 TGGGTTTAAAAAGGATGGTGTTT 57.040 34.783 0.00 0.00 0.00 2.83
272 273 5.959583 TTGGGTTTAAAAAGGATGGTGTT 57.040 34.783 0.00 0.00 0.00 3.32
273 274 5.189934 TGTTTGGGTTTAAAAAGGATGGTGT 59.810 36.000 0.00 0.00 0.00 4.16
274 275 5.675538 TGTTTGGGTTTAAAAAGGATGGTG 58.324 37.500 0.00 0.00 0.00 4.17
275 276 5.959583 TGTTTGGGTTTAAAAAGGATGGT 57.040 34.783 0.00 0.00 0.00 3.55
276 277 7.386573 GTGTATGTTTGGGTTTAAAAAGGATGG 59.613 37.037 0.00 0.00 0.00 3.51
277 278 8.147704 AGTGTATGTTTGGGTTTAAAAAGGATG 58.852 33.333 0.00 0.00 0.00 3.51
278 279 8.257602 AGTGTATGTTTGGGTTTAAAAAGGAT 57.742 30.769 0.00 0.00 0.00 3.24
279 280 7.562088 AGAGTGTATGTTTGGGTTTAAAAAGGA 59.438 33.333 0.00 0.00 0.00 3.36
280 281 7.722363 AGAGTGTATGTTTGGGTTTAAAAAGG 58.278 34.615 0.00 0.00 0.00 3.11
281 282 9.244799 GAAGAGTGTATGTTTGGGTTTAAAAAG 57.755 33.333 0.00 0.00 0.00 2.27
282 283 8.750298 TGAAGAGTGTATGTTTGGGTTTAAAAA 58.250 29.630 0.00 0.00 0.00 1.94
283 284 8.294954 TGAAGAGTGTATGTTTGGGTTTAAAA 57.705 30.769 0.00 0.00 0.00 1.52
284 285 7.883391 TGAAGAGTGTATGTTTGGGTTTAAA 57.117 32.000 0.00 0.00 0.00 1.52
285 286 7.883391 TTGAAGAGTGTATGTTTGGGTTTAA 57.117 32.000 0.00 0.00 0.00 1.52
286 287 7.883391 TTTGAAGAGTGTATGTTTGGGTTTA 57.117 32.000 0.00 0.00 0.00 2.01
287 288 6.783708 TTTGAAGAGTGTATGTTTGGGTTT 57.216 33.333 0.00 0.00 0.00 3.27
288 289 6.976934 ATTTGAAGAGTGTATGTTTGGGTT 57.023 33.333 0.00 0.00 0.00 4.11
289 290 6.976934 AATTTGAAGAGTGTATGTTTGGGT 57.023 33.333 0.00 0.00 0.00 4.51
290 291 7.975616 CCATAATTTGAAGAGTGTATGTTTGGG 59.024 37.037 0.00 0.00 0.00 4.12
291 292 8.739039 TCCATAATTTGAAGAGTGTATGTTTGG 58.261 33.333 0.00 0.00 0.00 3.28
292 293 9.778993 CTCCATAATTTGAAGAGTGTATGTTTG 57.221 33.333 0.00 0.00 0.00 2.93
293 294 9.520515 ACTCCATAATTTGAAGAGTGTATGTTT 57.479 29.630 0.00 0.00 36.48 2.83
294 295 8.950210 CACTCCATAATTTGAAGAGTGTATGTT 58.050 33.333 14.59 0.00 45.95 2.71
295 296 8.498054 CACTCCATAATTTGAAGAGTGTATGT 57.502 34.615 14.59 0.00 45.95 2.29
301 302 6.380079 ACTCCACTCCATAATTTGAAGAGT 57.620 37.500 0.00 0.00 38.30 3.24
302 303 8.792830 TTTACTCCACTCCATAATTTGAAGAG 57.207 34.615 0.00 0.00 0.00 2.85
303 304 9.581289 TTTTTACTCCACTCCATAATTTGAAGA 57.419 29.630 0.00 0.00 0.00 2.87
336 337 3.958147 AGATGATGGCATGCATCTTTTCA 59.042 39.130 24.37 12.17 46.65 2.69
337 338 4.585955 AGATGATGGCATGCATCTTTTC 57.414 40.909 24.37 16.04 46.65 2.29
349 350 1.433121 AAGAGGGGAGAGATGATGGC 58.567 55.000 0.00 0.00 0.00 4.40
351 352 7.164803 GGTAATTAAAGAGGGGAGAGATGATG 58.835 42.308 0.00 0.00 0.00 3.07
352 353 6.273495 GGGTAATTAAAGAGGGGAGAGATGAT 59.727 42.308 0.00 0.00 0.00 2.45
353 354 5.607171 GGGTAATTAAAGAGGGGAGAGATGA 59.393 44.000 0.00 0.00 0.00 2.92
356 357 4.967871 TGGGTAATTAAAGAGGGGAGAGA 58.032 43.478 0.00 0.00 0.00 3.10
359 360 4.533815 GGTTGGGTAATTAAAGAGGGGAG 58.466 47.826 0.00 0.00 0.00 4.30
361 362 3.629025 GGGGTTGGGTAATTAAAGAGGGG 60.629 52.174 0.00 0.00 0.00 4.79
362 363 3.629025 GGGGGTTGGGTAATTAAAGAGGG 60.629 52.174 0.00 0.00 0.00 4.30
363 364 3.011934 TGGGGGTTGGGTAATTAAAGAGG 59.988 47.826 0.00 0.00 0.00 3.69
364 365 4.325084 TGGGGGTTGGGTAATTAAAGAG 57.675 45.455 0.00 0.00 0.00 2.85
366 367 6.407639 GCTTATTGGGGGTTGGGTAATTAAAG 60.408 42.308 0.00 0.00 0.00 1.85
367 368 5.425862 GCTTATTGGGGGTTGGGTAATTAAA 59.574 40.000 0.00 0.00 0.00 1.52
368 369 4.963628 GCTTATTGGGGGTTGGGTAATTAA 59.036 41.667 0.00 0.00 0.00 1.40
369 370 4.233287 AGCTTATTGGGGGTTGGGTAATTA 59.767 41.667 0.00 0.00 0.00 1.40
370 371 3.013533 AGCTTATTGGGGGTTGGGTAATT 59.986 43.478 0.00 0.00 0.00 1.40
372 373 2.004589 AGCTTATTGGGGGTTGGGTAA 58.995 47.619 0.00 0.00 0.00 2.85
373 374 1.688750 AGCTTATTGGGGGTTGGGTA 58.311 50.000 0.00 0.00 0.00 3.69
374 375 1.688750 TAGCTTATTGGGGGTTGGGT 58.311 50.000 0.00 0.00 0.00 4.51
375 376 2.024369 ACTTAGCTTATTGGGGGTTGGG 60.024 50.000 0.00 0.00 0.00 4.12
376 377 3.023832 CACTTAGCTTATTGGGGGTTGG 58.976 50.000 0.00 0.00 0.00 3.77
377 378 2.427095 GCACTTAGCTTATTGGGGGTTG 59.573 50.000 0.00 0.00 41.15 3.77
378 379 2.042433 TGCACTTAGCTTATTGGGGGTT 59.958 45.455 0.00 0.00 45.94 4.11
379 380 1.638589 TGCACTTAGCTTATTGGGGGT 59.361 47.619 0.00 0.00 45.94 4.95
381 382 3.290710 ACATGCACTTAGCTTATTGGGG 58.709 45.455 0.00 0.00 45.94 4.96
382 383 5.368145 TCTACATGCACTTAGCTTATTGGG 58.632 41.667 0.00 0.00 45.94 4.12
387 388 9.884636 TCTTATTTTCTACATGCACTTAGCTTA 57.115 29.630 0.00 0.00 45.94 3.09
388 389 8.669243 GTCTTATTTTCTACATGCACTTAGCTT 58.331 33.333 0.00 0.00 45.94 3.74
389 390 7.010552 CGTCTTATTTTCTACATGCACTTAGCT 59.989 37.037 0.00 0.00 45.94 3.32
390 391 7.010183 TCGTCTTATTTTCTACATGCACTTAGC 59.990 37.037 0.00 0.00 45.96 3.09
391 392 8.321716 GTCGTCTTATTTTCTACATGCACTTAG 58.678 37.037 0.00 0.00 0.00 2.18
393 394 6.874134 AGTCGTCTTATTTTCTACATGCACTT 59.126 34.615 0.00 0.00 0.00 3.16
395 396 6.648725 AGTCGTCTTATTTTCTACATGCAC 57.351 37.500 0.00 0.00 0.00 4.57
396 397 8.194769 TCATAGTCGTCTTATTTTCTACATGCA 58.805 33.333 0.00 0.00 0.00 3.96
397 398 8.480853 GTCATAGTCGTCTTATTTTCTACATGC 58.519 37.037 0.00 0.00 0.00 4.06
399 400 7.861372 CGGTCATAGTCGTCTTATTTTCTACAT 59.139 37.037 0.00 0.00 0.00 2.29
401 402 6.142002 GCGGTCATAGTCGTCTTATTTTCTAC 59.858 42.308 0.00 0.00 0.00 2.59
402 403 6.204359 GCGGTCATAGTCGTCTTATTTTCTA 58.796 40.000 0.00 0.00 0.00 2.10
404 405 4.085721 CGCGGTCATAGTCGTCTTATTTTC 60.086 45.833 0.00 0.00 0.00 2.29
409 410 1.372582 ACGCGGTCATAGTCGTCTTA 58.627 50.000 12.47 0.00 0.00 2.10
410 411 0.524862 AACGCGGTCATAGTCGTCTT 59.475 50.000 12.47 0.00 33.72 3.01
412 413 1.192436 CGAACGCGGTCATAGTCGTC 61.192 60.000 25.89 0.00 33.72 4.20
413 414 1.226211 CGAACGCGGTCATAGTCGT 60.226 57.895 25.89 0.00 36.67 4.34
437 438 4.779733 GAGTGGAGGGAGCGGGGA 62.780 72.222 0.00 0.00 0.00 4.81
442 443 3.844090 GAGCGGAGTGGAGGGAGC 61.844 72.222 0.00 0.00 0.00 4.70
443 444 3.151022 GGAGCGGAGTGGAGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
458 459 4.361971 AGGCTCGTCCACTCCGGA 62.362 66.667 2.93 2.93 43.61 5.14
460 461 1.440938 CTAGAGGCTCGTCCACTCCG 61.441 65.000 9.22 0.00 37.04 4.63
463 464 3.927501 GCTAGAGGCTCGTCCACT 58.072 61.111 9.22 0.00 39.25 4.00
473 474 3.804873 GCTCCGTAAAAATGAGCTAGAGG 59.195 47.826 0.00 0.00 46.19 3.69
480 481 2.359900 AGCCTGCTCCGTAAAAATGAG 58.640 47.619 0.00 0.00 0.00 2.90
481 482 2.489938 AGCCTGCTCCGTAAAAATGA 57.510 45.000 0.00 0.00 0.00 2.57
483 484 4.332828 AGTTTAGCCTGCTCCGTAAAAAT 58.667 39.130 0.00 0.00 0.00 1.82
484 485 3.746940 AGTTTAGCCTGCTCCGTAAAAA 58.253 40.909 0.00 0.00 0.00 1.94
485 486 3.412237 AGTTTAGCCTGCTCCGTAAAA 57.588 42.857 0.00 0.00 0.00 1.52
488 489 2.159142 GCTTAGTTTAGCCTGCTCCGTA 60.159 50.000 0.00 0.00 35.06 4.02
489 490 1.405661 GCTTAGTTTAGCCTGCTCCGT 60.406 52.381 0.00 0.00 35.06 4.69
491 492 2.556257 GAGCTTAGTTTAGCCTGCTCC 58.444 52.381 0.00 0.00 42.20 4.70
492 493 2.093447 TGGAGCTTAGTTTAGCCTGCTC 60.093 50.000 0.00 0.00 42.20 4.26
493 494 1.909302 TGGAGCTTAGTTTAGCCTGCT 59.091 47.619 0.00 0.00 42.20 4.24
494 495 2.010497 GTGGAGCTTAGTTTAGCCTGC 58.990 52.381 0.00 0.00 42.20 4.85
496 497 4.367039 TTTGTGGAGCTTAGTTTAGCCT 57.633 40.909 0.00 0.00 42.20 4.58
497 498 4.096532 GGATTTGTGGAGCTTAGTTTAGCC 59.903 45.833 0.00 0.00 42.20 3.93
498 499 4.700213 TGGATTTGTGGAGCTTAGTTTAGC 59.300 41.667 0.00 0.00 41.53 3.09
500 501 5.652014 CCATGGATTTGTGGAGCTTAGTTTA 59.348 40.000 5.56 0.00 37.72 2.01
501 502 4.463891 CCATGGATTTGTGGAGCTTAGTTT 59.536 41.667 5.56 0.00 37.72 2.66
502 503 4.019174 CCATGGATTTGTGGAGCTTAGTT 58.981 43.478 5.56 0.00 37.72 2.24
506 507 2.905415 TCCATGGATTTGTGGAGCTT 57.095 45.000 11.44 0.00 39.51 3.74
514 515 1.303309 GCTCCGACTCCATGGATTTG 58.697 55.000 16.63 13.73 32.83 2.32
516 517 1.443407 CGCTCCGACTCCATGGATT 59.557 57.895 16.63 10.19 32.83 3.01
517 518 2.502492 CCGCTCCGACTCCATGGAT 61.502 63.158 16.63 5.60 32.83 3.41
518 519 2.928988 ATCCGCTCCGACTCCATGGA 62.929 60.000 15.27 15.27 0.00 3.41
519 520 2.502492 ATCCGCTCCGACTCCATGG 61.502 63.158 4.97 4.97 0.00 3.66
520 521 1.300465 CATCCGCTCCGACTCCATG 60.300 63.158 0.00 0.00 0.00 3.66
521 522 1.455773 TCATCCGCTCCGACTCCAT 60.456 57.895 0.00 0.00 0.00 3.41
522 523 2.044352 TCATCCGCTCCGACTCCA 60.044 61.111 0.00 0.00 0.00 3.86
523 524 1.175983 ATCTCATCCGCTCCGACTCC 61.176 60.000 0.00 0.00 0.00 3.85
524 525 0.039617 CATCTCATCCGCTCCGACTC 60.040 60.000 0.00 0.00 0.00 3.36
525 526 1.459455 CCATCTCATCCGCTCCGACT 61.459 60.000 0.00 0.00 0.00 4.18
526 527 1.006805 CCATCTCATCCGCTCCGAC 60.007 63.158 0.00 0.00 0.00 4.79
528 529 0.319728 AATCCATCTCATCCGCTCCG 59.680 55.000 0.00 0.00 0.00 4.63
530 531 1.671261 CGGAATCCATCTCATCCGCTC 60.671 57.143 0.00 0.00 46.97 5.03
531 532 0.319728 CGGAATCCATCTCATCCGCT 59.680 55.000 0.00 0.00 46.97 5.52
532 533 2.832931 CGGAATCCATCTCATCCGC 58.167 57.895 0.00 0.00 46.97 5.54
534 535 3.134458 GTGTTCGGAATCCATCTCATCC 58.866 50.000 0.00 0.00 0.00 3.51
536 537 2.826428 CGTGTTCGGAATCCATCTCAT 58.174 47.619 0.00 0.00 0.00 2.90
549 550 5.342525 GCATTCTATACATAGACCGTGTTCG 59.657 44.000 0.00 0.00 39.00 3.95
550 551 6.448006 AGCATTCTATACATAGACCGTGTTC 58.552 40.000 0.00 0.00 39.00 3.18
551 552 6.406692 AGCATTCTATACATAGACCGTGTT 57.593 37.500 0.00 0.00 39.00 3.32
552 553 7.704578 ATAGCATTCTATACATAGACCGTGT 57.295 36.000 0.00 0.00 39.00 4.49
553 554 7.489435 CCAATAGCATTCTATACATAGACCGTG 59.511 40.741 0.00 1.20 39.00 4.94
554 555 7.178628 ACCAATAGCATTCTATACATAGACCGT 59.821 37.037 0.00 0.00 39.00 4.83
555 556 7.548097 ACCAATAGCATTCTATACATAGACCG 58.452 38.462 0.00 0.00 39.00 4.79
564 565 9.944376 GGTAATCAAGACCAATAGCATTCTATA 57.056 33.333 0.00 0.00 34.53 1.31
566 567 6.929049 CGGTAATCAAGACCAATAGCATTCTA 59.071 38.462 0.00 0.00 36.72 2.10
567 568 5.760253 CGGTAATCAAGACCAATAGCATTCT 59.240 40.000 0.00 0.00 36.72 2.40
568 569 5.527582 ACGGTAATCAAGACCAATAGCATTC 59.472 40.000 0.00 0.00 36.72 2.67
571 572 4.188462 CACGGTAATCAAGACCAATAGCA 58.812 43.478 0.00 0.00 36.72 3.49
575 576 4.280436 TCACACGGTAATCAAGACCAAT 57.720 40.909 0.00 0.00 36.72 3.16
577 578 3.259625 TCATCACACGGTAATCAAGACCA 59.740 43.478 0.00 0.00 36.72 4.02
578 579 3.857052 TCATCACACGGTAATCAAGACC 58.143 45.455 0.00 0.00 0.00 3.85
580 581 4.705023 TCTCTCATCACACGGTAATCAAGA 59.295 41.667 0.00 0.00 0.00 3.02
582 583 5.400066 TTCTCTCATCACACGGTAATCAA 57.600 39.130 0.00 0.00 0.00 2.57
584 585 6.910536 ATTTTCTCTCATCACACGGTAATC 57.089 37.500 0.00 0.00 0.00 1.75
585 586 8.964476 AATATTTTCTCTCATCACACGGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
586 587 8.786826 AAATATTTTCTCTCATCACACGGTAA 57.213 30.769 0.00 0.00 0.00 2.85
588 589 7.687941 AAAATATTTTCTCTCATCACACGGT 57.312 32.000 7.64 0.00 0.00 4.83
657 1693 9.059260 GGTGAAGAGTGTATGTTTAGGTTTAAA 57.941 33.333 0.00 0.00 0.00 1.52
658 1694 7.385752 CGGTGAAGAGTGTATGTTTAGGTTTAA 59.614 37.037 0.00 0.00 0.00 1.52
660 1696 5.699458 CGGTGAAGAGTGTATGTTTAGGTTT 59.301 40.000 0.00 0.00 0.00 3.27
661 1697 5.235516 CGGTGAAGAGTGTATGTTTAGGTT 58.764 41.667 0.00 0.00 0.00 3.50
662 1698 4.322499 CCGGTGAAGAGTGTATGTTTAGGT 60.322 45.833 0.00 0.00 0.00 3.08
663 1699 4.081862 TCCGGTGAAGAGTGTATGTTTAGG 60.082 45.833 0.00 0.00 0.00 2.69
665 1701 4.081862 CCTCCGGTGAAGAGTGTATGTTTA 60.082 45.833 4.76 0.00 0.00 2.01
666 1702 3.306780 CCTCCGGTGAAGAGTGTATGTTT 60.307 47.826 4.76 0.00 0.00 2.83
667 1703 2.233922 CCTCCGGTGAAGAGTGTATGTT 59.766 50.000 4.76 0.00 0.00 2.71
669 1705 1.471676 GCCTCCGGTGAAGAGTGTATG 60.472 57.143 4.76 0.00 0.00 2.39
671 1707 0.541063 TGCCTCCGGTGAAGAGTGTA 60.541 55.000 4.76 0.00 0.00 2.90
673 1709 1.079543 CTGCCTCCGGTGAAGAGTG 60.080 63.158 4.76 0.00 0.00 3.51
674 1710 2.948720 GCTGCCTCCGGTGAAGAGT 61.949 63.158 4.76 0.00 0.00 3.24
675 1711 2.125350 GCTGCCTCCGGTGAAGAG 60.125 66.667 4.76 0.00 0.00 2.85
676 1712 2.922503 TGCTGCCTCCGGTGAAGA 60.923 61.111 4.76 0.00 0.00 2.87
678 1714 4.020617 CCTGCTGCCTCCGGTGAA 62.021 66.667 4.76 0.00 0.00 3.18
683 1719 2.759973 TACTCCCTGCTGCCTCCG 60.760 66.667 0.00 0.00 0.00 4.63
684 1720 1.381872 TCTACTCCCTGCTGCCTCC 60.382 63.158 0.00 0.00 0.00 4.30
685 1721 0.686112 ACTCTACTCCCTGCTGCCTC 60.686 60.000 0.00 0.00 0.00 4.70
686 1722 0.631753 TACTCTACTCCCTGCTGCCT 59.368 55.000 0.00 0.00 0.00 4.75
687 1723 0.747852 GTACTCTACTCCCTGCTGCC 59.252 60.000 0.00 0.00 0.00 4.85
688 1724 1.770294 AGTACTCTACTCCCTGCTGC 58.230 55.000 0.00 0.00 32.47 5.25
689 1725 2.691011 GGAAGTACTCTACTCCCTGCTG 59.309 54.545 0.00 0.00 38.26 4.41
690 1726 2.358405 GGGAAGTACTCTACTCCCTGCT 60.358 54.545 19.36 0.00 40.24 4.24
694 1730 3.052717 AGAAGGGGAAGTACTCTACTCCC 60.053 52.174 18.68 18.68 41.09 4.30
696 1732 3.878699 CGAGAAGGGGAAGTACTCTACTC 59.121 52.174 0.00 0.00 38.26 2.59
697 1733 3.371810 CCGAGAAGGGGAAGTACTCTACT 60.372 52.174 0.00 0.00 37.14 2.57
774 2793 2.526450 CTTGGCTGCCAGACGGATGA 62.526 60.000 22.17 3.19 33.81 2.92
775 2794 2.046023 TTGGCTGCCAGACGGATG 60.046 61.111 22.17 0.00 33.81 3.51
776 2795 2.270205 CTTGGCTGCCAGACGGAT 59.730 61.111 22.17 0.00 33.81 4.18
810 2830 2.672651 TGGTGTTGCAGCGGATGG 60.673 61.111 0.00 0.00 34.27 3.51
873 2893 2.208132 AAGAGAGCTCACGGAGAAGA 57.792 50.000 17.77 0.00 0.00 2.87
874 2894 3.629855 TGATAAGAGAGCTCACGGAGAAG 59.370 47.826 17.77 0.00 0.00 2.85
893 2913 2.124736 CGGGGTTGTGCGGATGAT 60.125 61.111 0.00 0.00 0.00 2.45
894 2914 4.402528 CCGGGGTTGTGCGGATGA 62.403 66.667 0.00 0.00 0.00 2.92
942 2962 0.451783 CTAATGGTGAAGGCAACCGC 59.548 55.000 0.00 0.00 37.44 5.68
982 3002 3.628032 GCCATAGGAAACAAGAACTAGGC 59.372 47.826 0.00 0.00 0.00 3.93
1186 3236 1.141019 GCTCGGCGTATGTGAAGGA 59.859 57.895 6.85 0.00 0.00 3.36
1362 3412 2.113986 ACCAGCCACTCTTGGTGC 59.886 61.111 0.00 0.00 45.98 5.01
1399 3449 2.208431 CATTTGACCGATCAGGAGCTC 58.792 52.381 4.71 4.71 45.00 4.09
1401 3451 0.659957 GCATTTGACCGATCAGGAGC 59.340 55.000 10.05 3.45 45.00 4.70
1402 3452 2.322355 AGCATTTGACCGATCAGGAG 57.678 50.000 10.05 0.00 45.00 3.69
1403 3453 2.358957 CAAGCATTTGACCGATCAGGA 58.641 47.619 10.05 0.00 45.00 3.86
1404 3454 1.202222 GCAAGCATTTGACCGATCAGG 60.202 52.381 0.00 0.00 39.31 3.86
1412 3530 3.476295 TCAATCTCGCAAGCATTTGAC 57.524 42.857 0.00 0.00 36.36 3.18
1432 3551 2.939103 GTCAGTTAGCAGCCGAATCAAT 59.061 45.455 0.00 0.00 0.00 2.57
1433 3552 2.346803 GTCAGTTAGCAGCCGAATCAA 58.653 47.619 0.00 0.00 0.00 2.57
1434 3553 1.735700 CGTCAGTTAGCAGCCGAATCA 60.736 52.381 0.00 0.00 0.00 2.57
1459 3579 4.558178 CCTGCAACAGCATGACAAAATAA 58.442 39.130 0.00 0.00 39.69 1.40
1466 3586 1.211969 CTGCCTGCAACAGCATGAC 59.788 57.895 6.22 0.00 39.69 3.06
1467 3587 0.958876 CTCTGCCTGCAACAGCATGA 60.959 55.000 10.80 7.79 39.69 3.07
1522 3643 2.675317 GCAGTAGCCGATCAGTTTCACT 60.675 50.000 0.00 0.00 33.58 3.41
1567 3688 1.202200 GCGCTCATGAACTCGTAGACT 60.202 52.381 0.00 0.00 0.00 3.24
1656 3840 8.776680 ACTGTACGTGCAAACTTTTAATTAAG 57.223 30.769 7.96 0.00 0.00 1.85
1675 3884 2.463553 TCGCGCATGTAGTACTGTAC 57.536 50.000 8.75 9.93 0.00 2.90
1676 3885 2.614983 TCATCGCGCATGTAGTACTGTA 59.385 45.455 8.75 0.00 33.66 2.74
1677 3886 1.404035 TCATCGCGCATGTAGTACTGT 59.596 47.619 8.75 0.00 33.66 3.55
1678 3887 2.047040 CTCATCGCGCATGTAGTACTG 58.953 52.381 8.75 0.00 33.66 2.74
1679 3888 1.600663 GCTCATCGCGCATGTAGTACT 60.601 52.381 8.75 0.00 33.66 2.73
1746 3956 2.597578 TAACTTGAAAGCCCCTTCCC 57.402 50.000 0.00 0.00 0.00 3.97
1747 3957 4.595986 TGTATAACTTGAAAGCCCCTTCC 58.404 43.478 0.00 0.00 0.00 3.46
1750 3960 5.014228 AGAGTTGTATAACTTGAAAGCCCCT 59.986 40.000 6.31 0.00 46.79 4.79
1753 4109 6.206829 ACCAAGAGTTGTATAACTTGAAAGCC 59.793 38.462 6.31 0.00 46.79 4.35
1815 4172 4.366267 AGACCCACTGATACCTGAAGATT 58.634 43.478 0.00 0.00 0.00 2.40
1975 4336 3.181487 TGCAACTGAAAAAGCCTGAAGAC 60.181 43.478 0.00 0.00 0.00 3.01
1995 4356 4.976116 GGTGACATTTCAGTTTAGTGTTGC 59.024 41.667 0.00 0.00 30.10 4.17
2019 4380 1.798813 GACGTGTTGTTCCCAGATGAC 59.201 52.381 0.00 0.00 0.00 3.06
2052 4414 7.335627 TGGACCCTGTAATAATTCTAACAGTG 58.664 38.462 11.06 0.00 38.10 3.66
2057 4419 9.589461 TTTTGTTGGACCCTGTAATAATTCTAA 57.411 29.630 0.00 0.00 0.00 2.10
2169 4564 6.018669 GTGCCAACTATATGACTACAAGCTTC 60.019 42.308 0.00 0.00 0.00 3.86
2176 4571 7.709182 TGTTGTATGTGCCAACTATATGACTAC 59.291 37.037 5.07 0.00 42.09 2.73
2188 4583 1.231221 GTCGGTGTTGTATGTGCCAA 58.769 50.000 0.00 0.00 0.00 4.52
2196 4591 0.031043 CCAGTCACGTCGGTGTTGTA 59.969 55.000 0.00 0.00 44.68 2.41
2318 4713 6.099125 TGCAGGGTATCTATTTGTGTAAGCTA 59.901 38.462 0.00 0.00 0.00 3.32
2388 4783 9.676861 TCTCACAATTGACATCATAAGAGAAAT 57.323 29.630 13.59 0.00 0.00 2.17
2407 4802 5.042463 TGGTTAGGTGAAATGTCTCACAA 57.958 39.130 6.12 0.00 46.31 3.33
2410 4805 7.286546 TCAAATTTGGTTAGGTGAAATGTCTCA 59.713 33.333 17.90 0.00 0.00 3.27
2411 4806 7.657336 TCAAATTTGGTTAGGTGAAATGTCTC 58.343 34.615 17.90 0.00 0.00 3.36
2448 4844 6.929049 TGACAATTTAGTGTTGTAGTCCTGAG 59.071 38.462 0.00 0.00 39.72 3.35
2650 5046 4.934942 CGTCGTGCACGGTCCACA 62.935 66.667 36.41 15.69 45.46 4.17
2680 5076 1.757699 CTAGCCCAGTCCACTAGGTTC 59.242 57.143 0.00 0.00 35.89 3.62
2717 5113 0.466189 ACCTGGTGCAGTTTGTCTGG 60.466 55.000 0.00 0.00 43.78 3.86
2779 5175 2.972505 ACCAACGCAGCCACTTCG 60.973 61.111 0.00 0.00 0.00 3.79
2935 5331 3.424703 CACCTTCATGTCCATCACCTTT 58.575 45.455 0.00 0.00 0.00 3.11
3030 5426 5.067954 GGATCACAATGTCATCATGGATCA 58.932 41.667 0.00 0.00 37.93 2.92
3039 5435 4.080186 TGTCTCCATGGATCACAATGTCAT 60.080 41.667 16.63 0.00 0.00 3.06
3112 5508 1.346722 CTTTCCCGGTGGTAACTCAGT 59.653 52.381 0.00 0.00 37.61 3.41
3113 5509 1.621814 TCTTTCCCGGTGGTAACTCAG 59.378 52.381 0.00 0.00 37.61 3.35
3143 5539 5.892686 ACTTCCACTACCATACTCCTAACTC 59.107 44.000 0.00 0.00 0.00 3.01
3161 5562 2.009051 CTACAATCATGCGCACTTCCA 58.991 47.619 14.90 0.00 0.00 3.53
3222 5625 4.443621 TCTAAACAAACGATGTGACACCA 58.556 39.130 2.45 0.00 42.99 4.17
3302 5705 4.162131 ACAAACTTGGCCAAAATCTGAACT 59.838 37.500 20.91 0.00 0.00 3.01
3331 5734 8.510243 AGACTCATTCATTTGCACACATATTA 57.490 30.769 0.00 0.00 0.00 0.98
3361 5764 2.887783 TCAGTCATTTAGCCCGCAAAAA 59.112 40.909 0.00 0.00 0.00 1.94
3362 5765 2.487762 CTCAGTCATTTAGCCCGCAAAA 59.512 45.455 0.00 0.00 0.00 2.44
3363 5766 2.083774 CTCAGTCATTTAGCCCGCAAA 58.916 47.619 0.00 0.00 0.00 3.68
3364 5767 1.003118 ACTCAGTCATTTAGCCCGCAA 59.997 47.619 0.00 0.00 0.00 4.85
3365 5768 0.613260 ACTCAGTCATTTAGCCCGCA 59.387 50.000 0.00 0.00 0.00 5.69
3366 5769 1.134670 AGACTCAGTCATTTAGCCCGC 60.135 52.381 7.77 0.00 34.60 6.13
3367 5770 2.969628 AGACTCAGTCATTTAGCCCG 57.030 50.000 7.77 0.00 34.60 6.13
3368 5771 5.105310 TCAAGTAGACTCAGTCATTTAGCCC 60.105 44.000 7.77 0.00 34.60 5.19
3369 5772 5.967088 TCAAGTAGACTCAGTCATTTAGCC 58.033 41.667 7.77 0.00 34.60 3.93
3370 5773 6.019156 GCATCAAGTAGACTCAGTCATTTAGC 60.019 42.308 7.77 0.00 34.60 3.09
3371 5774 6.478344 GGCATCAAGTAGACTCAGTCATTTAG 59.522 42.308 7.77 0.00 34.60 1.85
3372 5775 6.341316 GGCATCAAGTAGACTCAGTCATTTA 58.659 40.000 7.77 0.00 34.60 1.40
3379 5782 1.134995 TGCGGCATCAAGTAGACTCAG 60.135 52.381 0.00 0.00 0.00 3.35
3397 5800 4.155462 TGAAAGTGAAAGAGATGAGCATGC 59.845 41.667 10.51 10.51 0.00 4.06
3407 5810 6.476706 GGACCAACAATTTGAAAGTGAAAGAG 59.523 38.462 12.62 0.00 34.24 2.85
3408 5811 6.071108 TGGACCAACAATTTGAAAGTGAAAGA 60.071 34.615 12.62 0.00 34.24 2.52
3435 6104 4.793071 TCACTTGCCAACGATTTACAATG 58.207 39.130 0.00 0.00 0.00 2.82
3444 6113 1.686355 ACCAATTCACTTGCCAACGA 58.314 45.000 0.00 0.00 33.20 3.85
3467 6136 7.119699 TGCTTTTATGTGTCGATTTTCTCTCAT 59.880 33.333 0.00 0.00 0.00 2.90
3529 6281 4.734398 ATTTCAACTTGTGGTCTTGCAA 57.266 36.364 0.00 0.00 0.00 4.08
3555 6307 3.935203 ACTTGACATCATTAAGTGAGGCG 59.065 43.478 0.00 0.00 42.22 5.52
3562 6314 6.016777 GCCCTATCCAACTTGACATCATTAAG 60.017 42.308 0.00 0.00 0.00 1.85
3577 6329 4.206375 CAATGTGTACATGCCCTATCCAA 58.794 43.478 0.00 0.00 36.56 3.53
3596 6348 6.881065 ACACATTACTGTTCTACTGATGCAAT 59.119 34.615 0.00 0.00 31.62 3.56
3628 6397 1.737735 CGACACGAAGATGCTGCCA 60.738 57.895 0.00 0.00 0.00 4.92
3667 6436 4.218852 AGAAAACCGAACAACAGAAACCAA 59.781 37.500 0.00 0.00 0.00 3.67
3669 6438 4.365899 AGAAAACCGAACAACAGAAACC 57.634 40.909 0.00 0.00 0.00 3.27
3670 6439 5.060446 CACAAGAAAACCGAACAACAGAAAC 59.940 40.000 0.00 0.00 0.00 2.78
3674 6443 4.349663 TCACAAGAAAACCGAACAACAG 57.650 40.909 0.00 0.00 0.00 3.16
3682 6451 3.904136 AAGCAGATCACAAGAAAACCG 57.096 42.857 0.00 0.00 0.00 4.44
3711 6480 9.039870 CGATATAAATTCACAAGAAAGCTCTCT 57.960 33.333 0.00 0.00 37.29 3.10
3716 6485 8.798153 CCAAACGATATAAATTCACAAGAAAGC 58.202 33.333 0.00 0.00 37.29 3.51
3724 6493 9.646336 GTACACATCCAAACGATATAAATTCAC 57.354 33.333 0.00 0.00 0.00 3.18
3732 6501 8.397906 CAATCAAAGTACACATCCAAACGATAT 58.602 33.333 0.00 0.00 0.00 1.63
3740 6509 6.707440 AACAACAATCAAAGTACACATCCA 57.293 33.333 0.00 0.00 0.00 3.41
3835 6613 3.744942 CGTAAGAGATACTAGCGGCAGTA 59.255 47.826 1.45 8.60 43.02 2.74
3857 6635 2.352617 GCTGATCCTGATCGATCTGGTC 60.353 54.545 36.11 31.33 43.82 4.02
3858 6636 1.617850 GCTGATCCTGATCGATCTGGT 59.382 52.381 36.11 27.42 43.82 4.00
3872 6653 3.084039 TGACCAAATTGACCAGCTGATC 58.916 45.455 17.39 8.68 0.00 2.92
3969 6750 2.160417 CGCAGAATTTTGGACTGGAGTC 59.840 50.000 0.00 0.00 44.04 3.36
3988 6769 7.408921 CCGTTGACTATTTATGTTTTGTTTCGC 60.409 37.037 0.00 0.00 0.00 4.70
3990 6771 7.148869 GGCCGTTGACTATTTATGTTTTGTTTC 60.149 37.037 0.00 0.00 0.00 2.78
4001 6782 3.023119 TCTACCGGCCGTTGACTATTTA 58.977 45.455 26.12 0.00 0.00 1.40
4002 6783 1.826720 TCTACCGGCCGTTGACTATTT 59.173 47.619 26.12 0.00 0.00 1.40
4008 6789 1.203052 CTAGTTTCTACCGGCCGTTGA 59.797 52.381 26.12 15.80 0.00 3.18
4011 6792 1.101331 CTCTAGTTTCTACCGGCCGT 58.899 55.000 26.12 14.84 0.00 5.68
4016 6797 5.962433 TGGAAATGACTCTAGTTTCTACCG 58.038 41.667 3.60 0.00 33.51 4.02
4046 6827 5.585820 TGTGAGTTTAGCCATGATACGTA 57.414 39.130 0.00 0.00 0.00 3.57
4050 6831 5.125356 CACCATGTGAGTTTAGCCATGATA 58.875 41.667 0.00 0.00 37.47 2.15
4051 6832 3.949754 CACCATGTGAGTTTAGCCATGAT 59.050 43.478 0.00 0.00 37.47 2.45
4052 6833 3.244875 ACACCATGTGAGTTTAGCCATGA 60.245 43.478 0.49 0.00 37.47 3.07
4053 6834 3.084039 ACACCATGTGAGTTTAGCCATG 58.916 45.455 0.49 0.00 36.96 3.66
4054 6835 3.244875 TGACACCATGTGAGTTTAGCCAT 60.245 43.478 0.49 0.00 36.96 4.40
4055 6836 2.105649 TGACACCATGTGAGTTTAGCCA 59.894 45.455 0.49 0.00 36.96 4.75
4056 6837 2.484264 GTGACACCATGTGAGTTTAGCC 59.516 50.000 0.49 0.00 36.96 3.93
4057 6838 2.157668 CGTGACACCATGTGAGTTTAGC 59.842 50.000 0.00 0.00 36.96 3.09
4058 6839 2.157668 GCGTGACACCATGTGAGTTTAG 59.842 50.000 0.00 0.00 36.96 1.85
4059 6840 2.139917 GCGTGACACCATGTGAGTTTA 58.860 47.619 0.00 0.00 36.96 2.01
4060 6841 0.944386 GCGTGACACCATGTGAGTTT 59.056 50.000 0.00 0.00 36.96 2.66
4061 6842 0.884704 GGCGTGACACCATGTGAGTT 60.885 55.000 0.00 0.00 36.96 3.01
4062 6843 1.301716 GGCGTGACACCATGTGAGT 60.302 57.895 0.00 0.00 36.96 3.41
4063 6844 2.034879 GGGCGTGACACCATGTGAG 61.035 63.158 0.00 0.00 36.96 3.51
4064 6845 2.031919 GGGCGTGACACCATGTGA 59.968 61.111 0.00 0.00 36.96 3.58
4065 6846 2.281414 TGGGCGTGACACCATGTG 60.281 61.111 0.00 0.00 39.75 3.21
4066 6847 2.032528 CTGGGCGTGACACCATGT 59.967 61.111 0.00 0.00 35.93 3.21
4067 6848 3.434319 GCTGGGCGTGACACCATG 61.434 66.667 0.00 0.00 35.93 3.66
4068 6849 3.907260 CTGCTGGGCGTGACACCAT 62.907 63.158 0.00 0.00 35.93 3.55
4069 6850 4.624364 CTGCTGGGCGTGACACCA 62.624 66.667 0.00 0.00 35.05 4.17
4086 6867 0.041312 AAACGATGACAGCACAACGC 60.041 50.000 0.00 0.00 39.08 4.84
4087 6868 1.526887 AGAAACGATGACAGCACAACG 59.473 47.619 0.00 0.00 40.74 4.10
4088 6869 3.609103 AAGAAACGATGACAGCACAAC 57.391 42.857 0.00 0.00 0.00 3.32
4089 6870 5.106712 GGATTAAGAAACGATGACAGCACAA 60.107 40.000 0.00 0.00 0.00 3.33
4090 6871 4.391830 GGATTAAGAAACGATGACAGCACA 59.608 41.667 0.00 0.00 0.00 4.57
4091 6872 4.391830 TGGATTAAGAAACGATGACAGCAC 59.608 41.667 0.00 0.00 0.00 4.40
4092 6873 4.574892 TGGATTAAGAAACGATGACAGCA 58.425 39.130 0.00 0.00 0.00 4.41
4093 6874 5.741388 ATGGATTAAGAAACGATGACAGC 57.259 39.130 0.00 0.00 0.00 4.40
4094 6875 9.186323 CTAGTATGGATTAAGAAACGATGACAG 57.814 37.037 0.00 0.00 0.00 3.51
4095 6876 8.909923 TCTAGTATGGATTAAGAAACGATGACA 58.090 33.333 0.00 0.00 0.00 3.58
4096 6877 9.745880 TTCTAGTATGGATTAAGAAACGATGAC 57.254 33.333 0.00 0.00 0.00 3.06
4097 6878 9.967346 CTTCTAGTATGGATTAAGAAACGATGA 57.033 33.333 0.00 0.00 0.00 2.92
4098 6879 9.197694 CCTTCTAGTATGGATTAAGAAACGATG 57.802 37.037 0.00 0.00 0.00 3.84
4099 6880 9.144298 TCCTTCTAGTATGGATTAAGAAACGAT 57.856 33.333 0.00 0.00 0.00 3.73
4100 6881 8.529424 TCCTTCTAGTATGGATTAAGAAACGA 57.471 34.615 0.00 0.00 0.00 3.85
4101 6882 9.765795 AATCCTTCTAGTATGGATTAAGAAACG 57.234 33.333 18.10 0.00 45.66 3.60
4104 6885 9.447279 TCCAATCCTTCTAGTATGGATTAAGAA 57.553 33.333 18.70 8.33 45.71 2.52
4105 6886 8.871125 GTCCAATCCTTCTAGTATGGATTAAGA 58.129 37.037 18.70 16.33 45.71 2.10
4106 6887 7.815068 CGTCCAATCCTTCTAGTATGGATTAAG 59.185 40.741 18.70 15.06 45.71 1.85
4107 6888 7.667557 CGTCCAATCCTTCTAGTATGGATTAA 58.332 38.462 18.70 11.70 45.71 1.40
4108 6889 6.295123 GCGTCCAATCCTTCTAGTATGGATTA 60.295 42.308 18.70 8.38 45.71 1.75
4110 6891 4.021016 GCGTCCAATCCTTCTAGTATGGAT 60.021 45.833 7.68 7.68 42.52 3.41
4111 6892 3.321111 GCGTCCAATCCTTCTAGTATGGA 59.679 47.826 4.23 4.23 35.96 3.41
4112 6893 3.654414 GCGTCCAATCCTTCTAGTATGG 58.346 50.000 0.00 0.00 0.00 2.74
4113 6894 3.309388 CGCGTCCAATCCTTCTAGTATG 58.691 50.000 0.00 0.00 0.00 2.39
4114 6895 2.288273 GCGCGTCCAATCCTTCTAGTAT 60.288 50.000 8.43 0.00 0.00 2.12
4115 6896 1.066605 GCGCGTCCAATCCTTCTAGTA 59.933 52.381 8.43 0.00 0.00 1.82
4116 6897 0.179108 GCGCGTCCAATCCTTCTAGT 60.179 55.000 8.43 0.00 0.00 2.57
4117 6898 0.103208 AGCGCGTCCAATCCTTCTAG 59.897 55.000 8.43 0.00 0.00 2.43
4118 6899 0.535335 AAGCGCGTCCAATCCTTCTA 59.465 50.000 8.43 0.00 0.00 2.10
4119 6900 0.321653 AAAGCGCGTCCAATCCTTCT 60.322 50.000 8.43 0.00 0.00 2.85
4120 6901 0.179189 CAAAGCGCGTCCAATCCTTC 60.179 55.000 8.43 0.00 0.00 3.46
4121 6902 1.875963 CAAAGCGCGTCCAATCCTT 59.124 52.632 8.43 0.00 0.00 3.36
4122 6903 2.690778 GCAAAGCGCGTCCAATCCT 61.691 57.895 8.43 0.00 0.00 3.24
4123 6904 2.202479 GCAAAGCGCGTCCAATCC 60.202 61.111 8.43 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.