Multiple sequence alignment - TraesCS5A01G210000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G210000 chr5A 100.000 4250 0 0 1 4250 423177991 423173742 0.000000e+00 7849
1 TraesCS5A01G210000 chr5D 90.714 2983 162 53 681 3600 325087884 325084954 0.000000e+00 3868
2 TraesCS5A01G210000 chr5D 89.950 597 27 12 8 572 325088543 325087948 0.000000e+00 739
3 TraesCS5A01G210000 chr5D 88.535 628 33 18 3647 4250 325084951 325084339 0.000000e+00 725
4 TraesCS5A01G210000 chr5D 82.495 497 69 13 1818 2310 556471316 556471798 1.830000e-113 420
5 TraesCS5A01G210000 chr5D 82.218 478 73 7 1835 2310 556473897 556474364 6.620000e-108 401
6 TraesCS5A01G210000 chr5D 82.018 456 67 9 1842 2294 556460742 556461185 1.440000e-99 374
7 TraesCS5A01G210000 chr5D 83.204 387 55 2 2372 2758 556474373 556474749 3.150000e-91 346
8 TraesCS5A01G210000 chr5D 82.687 387 55 5 2372 2758 556471829 556472203 2.450000e-87 333
9 TraesCS5A01G210000 chr5D 81.654 387 61 1 2372 2758 556473083 556473459 3.190000e-81 313
10 TraesCS5A01G210000 chr5B 90.918 2929 181 37 681 3561 377537572 377534681 0.000000e+00 3856
11 TraesCS5A01G210000 chr5B 87.500 408 17 9 189 572 377538038 377537641 1.400000e-119 440
12 TraesCS5A01G210000 chr5B 81.303 476 70 14 1841 2313 694249522 694249063 6.710000e-98 368
13 TraesCS5A01G210000 chr5B 81.104 471 77 6 1841 2309 694248218 694247758 2.410000e-97 366
14 TraesCS5A01G210000 chr5B 80.833 480 74 16 1834 2310 694250806 694250342 1.120000e-95 361
15 TraesCS5A01G210000 chr5B 80.793 479 71 13 1834 2310 694257343 694256884 5.230000e-94 355
16 TraesCS5A01G210000 chr5B 81.039 385 60 6 2378 2761 694255543 694255171 1.160000e-75 294
17 TraesCS5A01G210000 chr5B 80.469 384 65 4 2378 2761 694250327 694249954 6.960000e-73 285
18 TraesCS5A01G210000 chr5B 80.103 387 65 5 2372 2758 694256853 694256479 1.160000e-70 278
19 TraesCS5A01G210000 chr5B 94.012 167 8 2 26 190 377539402 377539236 7.050000e-63 252
20 TraesCS5A01G210000 chr2B 90.955 199 18 0 2397 2595 105907654 105907852 7.000000e-68 268


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G210000 chr5A 423173742 423177991 4249 True 7849.000000 7849 100.00000 1 4250 1 chr5A.!!$R1 4249
1 TraesCS5A01G210000 chr5D 325084339 325088543 4204 True 1777.333333 3868 89.73300 8 4250 3 chr5D.!!$R1 4242
2 TraesCS5A01G210000 chr5D 556471316 556474749 3433 False 362.600000 420 82.45160 1818 2758 5 chr5D.!!$F2 940
3 TraesCS5A01G210000 chr5B 377534681 377539402 4721 True 1516.000000 3856 90.81000 26 3561 3 chr5B.!!$R1 3535
4 TraesCS5A01G210000 chr5B 694247758 694250806 3048 True 345.000000 368 80.92725 1834 2761 4 chr5B.!!$R2 927
5 TraesCS5A01G210000 chr5B 694255171 694257343 2172 True 309.000000 355 80.64500 1834 2761 3 chr5B.!!$R3 927

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.316841 GCTCGGGAGGAAGATAGCAG 59.683 60.0 0.00 0.0 0.0 4.24 F
661 1905 0.527565 CATCCCCTTTCTTGCAACGG 59.472 55.0 0.00 0.0 0.0 4.44 F
1042 2294 0.037046 CCTGTTGATTTTGGCCTGCC 60.037 55.0 3.32 0.0 0.0 4.85 F
1598 2850 0.595588 CGGTCGGAGGAGATCATCAG 59.404 60.0 0.00 0.0 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1011 2263 0.865111 TCAACAGGACAAACGATGCG 59.135 50.0 0.0 0.0 0.00 4.73 R
2130 3390 0.106918 TTTGTGTCCACAGTCCCCAC 60.107 55.0 0.0 0.0 42.94 4.61 R
2131 3391 0.182537 CTTTGTGTCCACAGTCCCCA 59.817 55.0 0.0 0.0 42.94 4.96 R
3257 5971 0.041312 CACAGGGAGCAAAAACGTCG 60.041 55.0 0.0 0.0 0.00 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.316841 GCTCGGGAGGAAGATAGCAG 59.683 60.000 0.00 0.00 0.00 4.24
64 70 1.000607 GTCGGTGCTCAGTACTCAACA 60.001 52.381 0.00 0.00 0.00 3.33
76 82 1.440850 CTCAACACAATGCCGCGTG 60.441 57.895 4.92 0.00 39.10 5.34
147 155 0.826715 CCGGGCTCTTCTCTGAATCA 59.173 55.000 0.00 0.00 0.00 2.57
179 187 0.949105 CAGTGCCACCGACCTACAAC 60.949 60.000 0.00 0.00 0.00 3.32
181 189 2.341176 GCCACCGACCTACAACGT 59.659 61.111 0.00 0.00 0.00 3.99
207 1414 3.744426 CGACTTAACACTAGTTGGTTGGG 59.256 47.826 8.47 4.52 38.69 4.12
252 1459 3.130160 CAGAGCTTCCTTGCCGGC 61.130 66.667 22.73 22.73 0.00 6.13
286 1494 3.204526 CATGGCAAGAGATCTCTGAACC 58.795 50.000 25.78 24.12 40.36 3.62
325 1543 0.912487 CCCAGTAGTGCCCAGGGTTA 60.912 60.000 7.55 0.00 34.75 2.85
572 1805 3.365265 CTTTCACACGGCAGGGCC 61.365 66.667 0.00 0.00 46.75 5.80
583 1816 4.415150 CAGGGCCGGCACACATCT 62.415 66.667 34.08 6.48 0.00 2.90
584 1817 4.415150 AGGGCCGGCACACATCTG 62.415 66.667 34.08 0.00 0.00 2.90
590 1823 2.733671 CGGCACACATCTGCGACAG 61.734 63.158 0.00 0.00 38.12 3.51
607 1840 4.065110 GCCCGTTGCTCTCTTGTT 57.935 55.556 0.00 0.00 36.87 2.83
617 1856 4.264460 TGCTCTCTTGTTCTTCTTCTCC 57.736 45.455 0.00 0.00 0.00 3.71
626 1865 0.544357 TCTTCTTCTCCGCTGGGGAA 60.544 55.000 14.81 9.15 46.61 3.97
638 1882 2.159382 GCTGGGGAAAAGATCGTTTCA 58.841 47.619 27.77 12.98 38.93 2.69
639 1883 2.556622 GCTGGGGAAAAGATCGTTTCAA 59.443 45.455 27.77 15.76 38.93 2.69
640 1884 3.193479 GCTGGGGAAAAGATCGTTTCAAT 59.807 43.478 27.77 0.16 38.93 2.57
641 1885 4.398044 GCTGGGGAAAAGATCGTTTCAATA 59.602 41.667 27.77 15.63 38.93 1.90
642 1886 5.676331 GCTGGGGAAAAGATCGTTTCAATAC 60.676 44.000 27.77 17.47 38.93 1.89
643 1887 5.317808 TGGGGAAAAGATCGTTTCAATACA 58.682 37.500 27.77 19.21 38.93 2.29
644 1888 5.949354 TGGGGAAAAGATCGTTTCAATACAT 59.051 36.000 27.77 0.00 38.93 2.29
645 1889 6.094881 TGGGGAAAAGATCGTTTCAATACATC 59.905 38.462 27.77 13.42 38.93 3.06
646 1890 6.459710 GGGGAAAAGATCGTTTCAATACATCC 60.460 42.308 27.77 19.44 38.93 3.51
647 1891 6.459710 GGGAAAAGATCGTTTCAATACATCCC 60.460 42.308 27.77 17.92 38.93 3.85
648 1892 6.451064 AAAAGATCGTTTCAATACATCCCC 57.549 37.500 0.34 0.00 0.00 4.81
649 1893 5.373812 AAGATCGTTTCAATACATCCCCT 57.626 39.130 0.00 0.00 0.00 4.79
650 1894 5.373812 AGATCGTTTCAATACATCCCCTT 57.626 39.130 0.00 0.00 0.00 3.95
651 1895 5.755849 AGATCGTTTCAATACATCCCCTTT 58.244 37.500 0.00 0.00 0.00 3.11
652 1896 5.823045 AGATCGTTTCAATACATCCCCTTTC 59.177 40.000 0.00 0.00 0.00 2.62
653 1897 5.174037 TCGTTTCAATACATCCCCTTTCT 57.826 39.130 0.00 0.00 0.00 2.52
654 1898 5.566469 TCGTTTCAATACATCCCCTTTCTT 58.434 37.500 0.00 0.00 0.00 2.52
655 1899 5.414454 TCGTTTCAATACATCCCCTTTCTTG 59.586 40.000 0.00 0.00 0.00 3.02
656 1900 5.410924 GTTTCAATACATCCCCTTTCTTGC 58.589 41.667 0.00 0.00 0.00 4.01
657 1901 4.314522 TCAATACATCCCCTTTCTTGCA 57.685 40.909 0.00 0.00 0.00 4.08
658 1902 4.671831 TCAATACATCCCCTTTCTTGCAA 58.328 39.130 0.00 0.00 0.00 4.08
659 1903 4.462483 TCAATACATCCCCTTTCTTGCAAC 59.538 41.667 0.00 0.00 0.00 4.17
660 1904 1.247567 ACATCCCCTTTCTTGCAACG 58.752 50.000 0.00 0.00 0.00 4.10
661 1905 0.527565 CATCCCCTTTCTTGCAACGG 59.472 55.000 0.00 0.00 0.00 4.44
662 1906 0.611896 ATCCCCTTTCTTGCAACGGG 60.612 55.000 0.00 3.18 34.62 5.28
663 1907 1.228429 CCCCTTTCTTGCAACGGGA 60.228 57.895 16.14 1.92 37.05 5.14
664 1908 0.825840 CCCCTTTCTTGCAACGGGAA 60.826 55.000 16.14 7.52 37.05 3.97
665 1909 1.036707 CCCTTTCTTGCAACGGGAAA 58.963 50.000 11.19 10.97 37.05 3.13
666 1910 1.618343 CCCTTTCTTGCAACGGGAAAT 59.382 47.619 11.44 0.00 37.05 2.17
667 1911 2.037121 CCCTTTCTTGCAACGGGAAATT 59.963 45.455 11.44 0.00 37.05 1.82
668 1912 3.494223 CCCTTTCTTGCAACGGGAAATTT 60.494 43.478 11.44 0.00 37.05 1.82
669 1913 3.494251 CCTTTCTTGCAACGGGAAATTTG 59.506 43.478 11.44 2.92 0.00 2.32
670 1914 2.147436 TCTTGCAACGGGAAATTTGC 57.853 45.000 0.22 0.22 46.88 3.68
674 1918 2.077413 GCAACGGGAAATTTGCATGA 57.923 45.000 12.05 0.00 46.13 3.07
675 1919 2.620242 GCAACGGGAAATTTGCATGAT 58.380 42.857 12.05 0.00 46.13 2.45
676 1920 3.002102 GCAACGGGAAATTTGCATGATT 58.998 40.909 12.05 0.00 46.13 2.57
677 1921 3.181518 GCAACGGGAAATTTGCATGATTG 60.182 43.478 12.05 10.13 46.13 2.67
678 1922 3.959535 ACGGGAAATTTGCATGATTGT 57.040 38.095 12.05 0.00 0.00 2.71
679 1923 3.587923 ACGGGAAATTTGCATGATTGTG 58.412 40.909 12.05 0.00 0.00 3.33
696 1940 1.071699 TGTGTTAGGCTGGAACTGACC 59.928 52.381 0.00 0.00 35.11 4.02
708 1952 4.912586 TGGAACTGACCGAATTGGATTTA 58.087 39.130 0.00 0.00 42.00 1.40
709 1953 5.317808 TGGAACTGACCGAATTGGATTTAA 58.682 37.500 0.00 0.00 42.00 1.52
710 1954 5.949354 TGGAACTGACCGAATTGGATTTAAT 59.051 36.000 0.00 0.00 42.00 1.40
711 1955 6.435904 TGGAACTGACCGAATTGGATTTAATT 59.564 34.615 0.00 0.00 42.00 1.40
712 1956 7.039363 TGGAACTGACCGAATTGGATTTAATTT 60.039 33.333 0.00 0.00 42.00 1.82
717 1961 8.700722 TGACCGAATTGGATTTAATTTTGATG 57.299 30.769 0.00 0.00 42.00 3.07
736 1980 2.379972 TGGTGGTTGGGTTTTACTGTG 58.620 47.619 0.00 0.00 0.00 3.66
756 2000 1.004927 GCGTGATCGAGTAATTGGCAC 60.005 52.381 0.00 0.00 39.71 5.01
783 2027 2.493278 ACTTGGGATTTTGATCTTGCCG 59.507 45.455 0.00 0.00 0.00 5.69
916 2160 1.001641 CCTTGTCCTTGGCAGGGAG 60.002 63.158 19.85 7.50 36.46 4.30
988 2240 3.504520 TCTTTTTCCGGTGCCTAATTGAC 59.495 43.478 0.00 0.00 0.00 3.18
1011 2263 1.372087 CCAGCGCCATGAGGAAGAAC 61.372 60.000 2.29 0.00 36.89 3.01
1042 2294 0.037046 CCTGTTGATTTTGGCCTGCC 60.037 55.000 3.32 0.00 0.00 4.85
1101 2353 2.365408 ACATTTTCTCGTCTCCGTCC 57.635 50.000 0.00 0.00 35.01 4.79
1273 2525 2.703798 TACCGGAACCTCTTCGCCG 61.704 63.158 9.46 0.00 43.20 6.46
1530 2782 2.432628 CGGCTGGTGAACGACCTC 60.433 66.667 0.00 0.00 46.32 3.85
1536 2788 3.764049 GTGAACGACCTCACGCGC 61.764 66.667 5.73 0.00 36.64 6.86
1598 2850 0.595588 CGGTCGGAGGAGATCATCAG 59.404 60.000 0.00 0.00 0.00 2.90
1608 2860 1.118356 AGATCATCAGGGAGTCCGGC 61.118 60.000 2.26 0.00 38.33 6.13
1725 2977 0.684805 ACTCCAGGACCATCTCCGAC 60.685 60.000 0.00 0.00 45.10 4.79
1890 3144 2.570135 GTGGGCATTCAGAAGGAGATC 58.430 52.381 0.00 0.00 0.00 2.75
1932 3186 3.006247 GTCTTCCAAGATGCTGGTTCTC 58.994 50.000 0.00 0.00 37.39 2.87
1975 3229 3.361977 GTGTGGCGGGCAAATCGT 61.362 61.111 5.57 0.00 0.00 3.73
2052 3306 0.606673 GCCTCCACACCTTTCAGTCC 60.607 60.000 0.00 0.00 0.00 3.85
2132 3392 8.870160 TTTCCATCTTTCTTTTAATGTGTGTG 57.130 30.769 0.00 0.00 0.00 3.82
2133 3393 6.980593 TCCATCTTTCTTTTAATGTGTGTGG 58.019 36.000 0.00 0.00 0.00 4.17
2145 3405 1.690985 TGTGTGGGGACTGTGGACA 60.691 57.895 0.00 0.00 0.00 4.02
2236 3499 1.602311 AGCAGGAAGAGCTGTTGTTG 58.398 50.000 0.00 0.00 41.61 3.33
2275 3538 3.004171 GCAGGCTCATGATCATCTCATC 58.996 50.000 4.86 0.00 42.91 2.92
2311 3574 4.104261 TCCATACTAGCAGCTCAGGTACTA 59.896 45.833 0.00 0.00 36.02 1.82
2313 3576 2.303175 ACTAGCAGCTCAGGTACTAGC 58.697 52.381 10.59 7.15 36.02 3.42
2316 3579 2.183679 AGCAGCTCAGGTACTAGCTTT 58.816 47.619 13.06 4.96 41.14 3.51
2317 3580 3.366396 AGCAGCTCAGGTACTAGCTTTA 58.634 45.455 13.06 0.00 41.14 1.85
2318 3581 3.383185 AGCAGCTCAGGTACTAGCTTTAG 59.617 47.826 13.06 6.20 41.14 1.85
2319 3582 3.131400 GCAGCTCAGGTACTAGCTTTAGT 59.869 47.826 13.06 0.00 41.14 2.24
2320 3583 4.338682 GCAGCTCAGGTACTAGCTTTAGTA 59.661 45.833 13.06 0.00 41.14 1.82
2330 3594 9.872721 AGGTACTAGCTTTAGTATTTTCTCAAC 57.127 33.333 0.00 0.00 36.02 3.18
2370 3659 4.565564 ACGTGATAAAATCTAACTCGCACC 59.434 41.667 0.00 0.00 0.00 5.01
2387 3676 2.678336 GCACCTGTATGCTAACTGAACC 59.322 50.000 0.00 0.00 42.62 3.62
2389 3678 4.579869 CACCTGTATGCTAACTGAACCTT 58.420 43.478 0.00 0.00 0.00 3.50
2602 3891 7.464358 CCAACTTTACTTCGGTAAGATCATTG 58.536 38.462 0.00 0.00 40.86 2.82
2622 3911 8.393395 TCATTGTTTTTCTTCAGTTTTCTTCG 57.607 30.769 0.00 0.00 0.00 3.79
2648 3940 2.039746 TGTACTAGTTGCTGCAACCCAT 59.960 45.455 34.59 24.02 44.49 4.00
2668 3960 4.758165 CCATTGCATCTATGTCACTGCATA 59.242 41.667 0.00 0.00 43.51 3.14
2680 3972 5.868257 TGTCACTGCATATTGTTCGATTTC 58.132 37.500 0.00 0.00 0.00 2.17
2690 3982 7.465513 GCATATTGTTCGATTTCCTAACGTCTT 60.466 37.037 0.00 0.00 0.00 3.01
2694 3986 6.423862 TGTTCGATTTCCTAACGTCTTTTTG 58.576 36.000 0.00 0.00 0.00 2.44
2702 3994 1.029681 AACGTCTTTTTGGGCAGGTC 58.970 50.000 0.00 0.00 0.00 3.85
2804 4197 2.508526 AGGTGTTCTTGGTCAGATTGC 58.491 47.619 0.00 0.00 0.00 3.56
2815 4208 0.322816 TCAGATTGCTGTTCCTGGCC 60.323 55.000 0.00 0.00 42.84 5.36
2833 4226 1.373497 CGCCGCCACTATCCAGATC 60.373 63.158 0.00 0.00 0.00 2.75
2916 4310 4.911610 CGCACTTACAAAAAGATGGTTGAG 59.088 41.667 0.00 0.00 0.00 3.02
3038 4436 1.521010 CAGGCGACAGGATGCTCTG 60.521 63.158 0.00 0.00 42.53 3.35
3257 5971 0.035630 AGCAAGCAGTGATGGAGACC 60.036 55.000 0.00 0.00 0.00 3.85
3272 5986 0.883370 AGACCGACGTTTTTGCTCCC 60.883 55.000 0.00 0.00 0.00 4.30
3273 5987 0.883370 GACCGACGTTTTTGCTCCCT 60.883 55.000 0.00 0.00 0.00 4.20
3306 6047 3.061322 GCGGGGTTTGTGGTTTTATTTC 58.939 45.455 0.00 0.00 0.00 2.17
3312 6053 5.458015 GGTTTGTGGTTTTATTTCCGAGAG 58.542 41.667 0.00 0.00 0.00 3.20
3313 6054 5.239963 GGTTTGTGGTTTTATTTCCGAGAGA 59.760 40.000 0.00 0.00 0.00 3.10
3314 6055 6.371389 GTTTGTGGTTTTATTTCCGAGAGAG 58.629 40.000 0.00 0.00 0.00 3.20
3315 6056 5.477607 TGTGGTTTTATTTCCGAGAGAGA 57.522 39.130 0.00 0.00 0.00 3.10
3321 6062 7.097834 GGTTTTATTTCCGAGAGAGAGAAGAA 58.902 38.462 0.00 0.00 0.00 2.52
3363 6104 1.089920 GGGTGTGTGATGCTGTGATC 58.910 55.000 0.00 0.00 0.00 2.92
3365 6106 2.093500 GGGTGTGTGATGCTGTGATCTA 60.093 50.000 0.00 0.00 0.00 1.98
3366 6107 2.932614 GGTGTGTGATGCTGTGATCTAC 59.067 50.000 0.00 0.00 0.00 2.59
3367 6108 3.368843 GGTGTGTGATGCTGTGATCTACT 60.369 47.826 0.00 0.00 0.00 2.57
3368 6109 4.142160 GGTGTGTGATGCTGTGATCTACTA 60.142 45.833 0.00 0.00 0.00 1.82
3370 6111 4.706962 TGTGTGATGCTGTGATCTACTACT 59.293 41.667 0.00 0.00 0.00 2.57
3371 6112 5.185828 TGTGTGATGCTGTGATCTACTACTT 59.814 40.000 0.00 0.00 0.00 2.24
3396 6137 2.413796 CGTCGTTTGTATTTAGCTGGCA 59.586 45.455 0.00 0.00 0.00 4.92
3418 6159 2.977169 CGTATGAGTTTGGTTTTTGCCG 59.023 45.455 0.00 0.00 0.00 5.69
3540 6308 9.746711 CTCTTTACTGTAAATCATTCAAACGAG 57.253 33.333 12.95 8.42 0.00 4.18
3549 6317 9.612620 GTAAATCATTCAAACGAGTTTCATTCT 57.387 29.630 0.00 0.00 0.00 2.40
3553 6321 4.472691 TCAAACGAGTTTCATTCTGCAG 57.527 40.909 7.63 7.63 0.00 4.41
3612 6625 8.902540 TTCAGTCAGTATTTTTCTTTAGAGCA 57.097 30.769 0.00 0.00 0.00 4.26
3613 6626 8.902540 TCAGTCAGTATTTTTCTTTAGAGCAA 57.097 30.769 0.00 0.00 0.00 3.91
3614 6627 8.774586 TCAGTCAGTATTTTTCTTTAGAGCAAC 58.225 33.333 0.00 0.00 0.00 4.17
3615 6628 8.778358 CAGTCAGTATTTTTCTTTAGAGCAACT 58.222 33.333 0.00 0.00 0.00 3.16
3616 6629 9.343539 AGTCAGTATTTTTCTTTAGAGCAACTT 57.656 29.630 0.00 0.00 0.00 2.66
3638 6651 3.685139 TTTTCAGTCAGTCTAGCCTGG 57.315 47.619 0.08 0.00 33.14 4.45
3639 6652 2.604912 TTCAGTCAGTCTAGCCTGGA 57.395 50.000 0.08 0.00 33.14 3.86
3640 6653 2.604912 TCAGTCAGTCTAGCCTGGAA 57.395 50.000 0.08 0.00 33.14 3.53
3643 6656 3.840666 TCAGTCAGTCTAGCCTGGAAATT 59.159 43.478 0.08 0.00 33.14 1.82
3644 6657 4.081420 TCAGTCAGTCTAGCCTGGAAATTC 60.081 45.833 0.08 0.00 33.14 2.17
3645 6658 3.118956 AGTCAGTCTAGCCTGGAAATTCG 60.119 47.826 0.08 0.00 33.14 3.34
3658 6671 5.391950 CCTGGAAATTCGTAAATGTGACCTG 60.392 44.000 0.00 0.00 0.00 4.00
3671 6684 1.804151 GTGACCTGTTGCGAGCAATAA 59.196 47.619 13.89 5.07 38.28 1.40
3688 6701 2.754012 TAAGCCCATAAGCCTGCATT 57.246 45.000 0.00 0.00 0.00 3.56
3691 6704 1.744014 CCCATAAGCCTGCATTGCC 59.256 57.895 6.12 0.00 0.00 4.52
3725 6738 0.958091 TGGGCCGAATCTTGTTTGTG 59.042 50.000 0.00 0.00 0.00 3.33
3726 6739 0.958822 GGGCCGAATCTTGTTTGTGT 59.041 50.000 0.00 0.00 0.00 3.72
3727 6740 2.156098 GGGCCGAATCTTGTTTGTGTA 58.844 47.619 0.00 0.00 0.00 2.90
3728 6741 2.095415 GGGCCGAATCTTGTTTGTGTAC 60.095 50.000 0.00 0.00 0.00 2.90
3729 6742 2.095415 GGCCGAATCTTGTTTGTGTACC 60.095 50.000 0.00 0.00 0.00 3.34
3730 6743 2.812011 GCCGAATCTTGTTTGTGTACCT 59.188 45.455 0.00 0.00 0.00 3.08
3731 6744 3.252458 GCCGAATCTTGTTTGTGTACCTT 59.748 43.478 0.00 0.00 0.00 3.50
3732 6745 4.261447 GCCGAATCTTGTTTGTGTACCTTT 60.261 41.667 0.00 0.00 0.00 3.11
3733 6746 5.049267 GCCGAATCTTGTTTGTGTACCTTTA 60.049 40.000 0.00 0.00 0.00 1.85
3734 6747 6.513720 GCCGAATCTTGTTTGTGTACCTTTAA 60.514 38.462 0.00 0.00 0.00 1.52
3735 6748 7.590279 CCGAATCTTGTTTGTGTACCTTTAAT 58.410 34.615 0.00 0.00 0.00 1.40
3736 6749 8.723311 CCGAATCTTGTTTGTGTACCTTTAATA 58.277 33.333 0.00 0.00 0.00 0.98
3737 6750 9.755064 CGAATCTTGTTTGTGTACCTTTAATAG 57.245 33.333 0.00 0.00 0.00 1.73
3878 6891 7.039011 TCACCTCTATGTAACAGATTCAGTGTT 60.039 37.037 0.00 0.00 41.11 3.32
4220 7255 6.785488 TGCAGACTGAAGTAAACAACATAG 57.215 37.500 6.65 0.00 0.00 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.467384 ATCTTCCTCCCGAGCACATG 59.533 55.000 0.00 0.00 0.00 3.21
1 2 1.967066 CTATCTTCCTCCCGAGCACAT 59.033 52.381 0.00 0.00 0.00 3.21
2 3 1.403814 CTATCTTCCTCCCGAGCACA 58.596 55.000 0.00 0.00 0.00 4.57
4 5 0.397114 TGCTATCTTCCTCCCGAGCA 60.397 55.000 0.00 0.00 37.58 4.26
5 6 0.316841 CTGCTATCTTCCTCCCGAGC 59.683 60.000 0.00 0.00 0.00 5.03
7 8 2.454336 TTCTGCTATCTTCCTCCCGA 57.546 50.000 0.00 0.00 0.00 5.14
8 9 3.556004 GGATTTCTGCTATCTTCCTCCCG 60.556 52.174 0.00 0.00 0.00 5.14
10 11 4.640364 CTGGATTTCTGCTATCTTCCTCC 58.360 47.826 0.00 0.00 0.00 4.30
11 12 4.064388 GCTGGATTTCTGCTATCTTCCTC 58.936 47.826 0.00 0.00 37.35 3.71
24 25 2.744202 ACTGACATGAACGCTGGATTTC 59.256 45.455 0.00 0.00 0.00 2.17
84 90 1.847088 AGCAATCCCCTTTCTCCTACC 59.153 52.381 0.00 0.00 0.00 3.18
135 141 2.625737 ACGCCACATGATTCAGAGAAG 58.374 47.619 0.00 0.00 0.00 2.85
147 155 0.673644 GGCACTGTCTTACGCCACAT 60.674 55.000 1.59 0.00 44.25 3.21
179 187 2.666619 AACTAGTGTTAAGTCGGCGACG 60.667 50.000 31.59 17.59 45.10 5.12
181 189 2.352030 CCAACTAGTGTTAAGTCGGCGA 60.352 50.000 4.99 4.99 34.60 5.54
207 1414 0.252197 AGTAACCGCCAGTTGGATCC 59.748 55.000 4.20 4.20 39.67 3.36
252 1459 1.153784 GCCATGCCATGTTCCGTTG 60.154 57.895 3.63 0.00 0.00 4.10
263 1471 1.140452 TCAGAGATCTCTTGCCATGCC 59.860 52.381 22.95 0.00 37.98 4.40
286 1494 2.582498 GTCGACGGGAATGCGAGG 60.582 66.667 0.00 0.00 34.41 4.63
471 1701 2.548067 CCGATCGGAGATTTACAAGGGG 60.548 54.545 30.62 0.00 45.12 4.79
472 1702 2.364324 TCCGATCGGAGATTTACAAGGG 59.636 50.000 32.59 2.16 45.12 3.95
572 1805 2.733671 CTGTCGCAGATGTGTGCCG 61.734 63.158 0.00 0.00 40.62 5.69
573 1806 3.031964 GCTGTCGCAGATGTGTGCC 62.032 63.158 10.46 0.00 40.62 5.01
574 1807 2.477845 GCTGTCGCAGATGTGTGC 59.522 61.111 10.46 0.00 40.67 4.57
575 1808 2.393768 GGGCTGTCGCAGATGTGTG 61.394 63.158 10.46 0.00 40.67 3.82
576 1809 2.046892 GGGCTGTCGCAGATGTGT 60.047 61.111 10.46 0.00 40.67 3.72
577 1810 3.190849 CGGGCTGTCGCAGATGTG 61.191 66.667 10.46 0.00 40.67 3.21
578 1811 3.240134 AACGGGCTGTCGCAGATGT 62.240 57.895 0.00 3.14 40.67 3.06
579 1812 2.434884 AACGGGCTGTCGCAGATG 60.435 61.111 0.00 2.62 40.67 2.90
580 1813 2.434884 CAACGGGCTGTCGCAGAT 60.435 61.111 0.00 0.00 40.67 2.90
590 1823 0.603975 AGAACAAGAGAGCAACGGGC 60.604 55.000 0.00 0.00 45.30 6.13
599 1832 2.894126 AGCGGAGAAGAAGAACAAGAGA 59.106 45.455 0.00 0.00 0.00 3.10
607 1840 0.544357 TTCCCCAGCGGAGAAGAAGA 60.544 55.000 0.00 0.00 43.39 2.87
617 1856 1.130561 GAAACGATCTTTTCCCCAGCG 59.869 52.381 12.48 0.00 30.43 5.18
626 1865 5.755849 AGGGGATGTATTGAAACGATCTTT 58.244 37.500 0.00 0.00 0.00 2.52
638 1882 3.443681 CGTTGCAAGAAAGGGGATGTATT 59.556 43.478 0.00 0.00 0.00 1.89
639 1883 3.016736 CGTTGCAAGAAAGGGGATGTAT 58.983 45.455 0.00 0.00 0.00 2.29
640 1884 2.432444 CGTTGCAAGAAAGGGGATGTA 58.568 47.619 0.00 0.00 0.00 2.29
641 1885 1.247567 CGTTGCAAGAAAGGGGATGT 58.752 50.000 0.00 0.00 0.00 3.06
642 1886 0.527565 CCGTTGCAAGAAAGGGGATG 59.472 55.000 0.00 0.00 32.56 3.51
643 1887 2.961424 CCGTTGCAAGAAAGGGGAT 58.039 52.632 0.00 0.00 32.56 3.85
644 1888 4.492604 CCGTTGCAAGAAAGGGGA 57.507 55.556 0.00 0.00 32.56 4.81
645 1889 3.365535 CCCGTTGCAAGAAAGGGG 58.634 61.111 17.06 9.74 45.96 4.79
646 1890 1.036707 TTTCCCGTTGCAAGAAAGGG 58.963 50.000 18.19 18.19 43.32 3.95
647 1891 3.385193 AATTTCCCGTTGCAAGAAAGG 57.615 42.857 15.07 9.81 33.33 3.11
648 1892 4.713854 CAAATTTCCCGTTGCAAGAAAG 57.286 40.909 15.07 2.35 33.33 2.62
656 1900 3.995705 ACAATCATGCAAATTTCCCGTTG 59.004 39.130 0.00 0.00 0.00 4.10
657 1901 3.995705 CACAATCATGCAAATTTCCCGTT 59.004 39.130 0.00 0.00 0.00 4.44
658 1902 3.006752 ACACAATCATGCAAATTTCCCGT 59.993 39.130 0.00 0.00 0.00 5.28
659 1903 3.587923 ACACAATCATGCAAATTTCCCG 58.412 40.909 0.00 0.00 0.00 5.14
660 1904 5.581874 CCTAACACAATCATGCAAATTTCCC 59.418 40.000 0.00 0.00 0.00 3.97
661 1905 5.063817 GCCTAACACAATCATGCAAATTTCC 59.936 40.000 0.00 0.00 0.00 3.13
662 1906 5.870978 AGCCTAACACAATCATGCAAATTTC 59.129 36.000 0.00 0.00 0.00 2.17
663 1907 5.640357 CAGCCTAACACAATCATGCAAATTT 59.360 36.000 0.00 0.00 0.00 1.82
664 1908 5.172934 CAGCCTAACACAATCATGCAAATT 58.827 37.500 0.00 0.00 0.00 1.82
665 1909 4.382254 CCAGCCTAACACAATCATGCAAAT 60.382 41.667 0.00 0.00 0.00 2.32
666 1910 3.056678 CCAGCCTAACACAATCATGCAAA 60.057 43.478 0.00 0.00 0.00 3.68
667 1911 2.492881 CCAGCCTAACACAATCATGCAA 59.507 45.455 0.00 0.00 0.00 4.08
668 1912 2.093890 CCAGCCTAACACAATCATGCA 58.906 47.619 0.00 0.00 0.00 3.96
669 1913 2.368439 TCCAGCCTAACACAATCATGC 58.632 47.619 0.00 0.00 0.00 4.06
670 1914 4.012374 AGTTCCAGCCTAACACAATCATG 58.988 43.478 0.00 0.00 0.00 3.07
671 1915 4.012374 CAGTTCCAGCCTAACACAATCAT 58.988 43.478 0.00 0.00 0.00 2.45
672 1916 3.072330 TCAGTTCCAGCCTAACACAATCA 59.928 43.478 0.00 0.00 0.00 2.57
673 1917 3.437049 GTCAGTTCCAGCCTAACACAATC 59.563 47.826 0.00 0.00 0.00 2.67
674 1918 3.412386 GTCAGTTCCAGCCTAACACAAT 58.588 45.455 0.00 0.00 0.00 2.71
675 1919 2.486548 GGTCAGTTCCAGCCTAACACAA 60.487 50.000 0.00 0.00 0.00 3.33
676 1920 1.071699 GGTCAGTTCCAGCCTAACACA 59.928 52.381 0.00 0.00 0.00 3.72
677 1921 1.809684 GGTCAGTTCCAGCCTAACAC 58.190 55.000 0.00 0.00 0.00 3.32
678 1922 0.320374 CGGTCAGTTCCAGCCTAACA 59.680 55.000 0.00 0.00 0.00 2.41
679 1923 0.606604 TCGGTCAGTTCCAGCCTAAC 59.393 55.000 0.00 0.00 0.00 2.34
696 1940 7.548780 ACCACCATCAAAATTAAATCCAATTCG 59.451 33.333 0.00 0.00 0.00 3.34
708 1952 4.787135 AAACCCAACCACCATCAAAATT 57.213 36.364 0.00 0.00 0.00 1.82
709 1953 4.787135 AAAACCCAACCACCATCAAAAT 57.213 36.364 0.00 0.00 0.00 1.82
710 1954 4.717280 AGTAAAACCCAACCACCATCAAAA 59.283 37.500 0.00 0.00 0.00 2.44
711 1955 4.100189 CAGTAAAACCCAACCACCATCAAA 59.900 41.667 0.00 0.00 0.00 2.69
712 1956 3.639094 CAGTAAAACCCAACCACCATCAA 59.361 43.478 0.00 0.00 0.00 2.57
717 1961 1.067974 GCACAGTAAAACCCAACCACC 59.932 52.381 0.00 0.00 0.00 4.61
736 1980 1.004927 GTGCCAATTACTCGATCACGC 60.005 52.381 0.00 0.00 39.58 5.34
756 2000 5.990120 AGATCAAAATCCCAAGTTCTTGG 57.010 39.130 20.84 20.84 41.72 3.61
1011 2263 0.865111 TCAACAGGACAAACGATGCG 59.135 50.000 0.00 0.00 0.00 4.73
1072 2324 5.551233 AGACGAGAAAATGTTCCATGAGAA 58.449 37.500 0.00 0.00 33.92 2.87
1122 2374 1.838846 GAGCTCCATCATCGGGGGA 60.839 63.158 0.87 0.00 0.00 4.81
1123 2375 2.746359 GAGCTCCATCATCGGGGG 59.254 66.667 0.87 0.00 0.00 5.40
1273 2525 3.344215 CATGATCTCGCCGCAGCC 61.344 66.667 0.00 0.00 34.57 4.85
1386 2638 2.042831 GCAGTGCACCATCCTGGAC 61.043 63.158 14.63 0.00 40.96 4.02
1435 2687 2.037251 CCAGGAAGAACTCGAGGAACAA 59.963 50.000 18.41 0.00 0.00 2.83
1530 2782 2.811317 GACTTGGAGGAGCGCGTG 60.811 66.667 8.43 0.00 0.00 5.34
1725 2977 1.144936 GGCGATCTCCTTGGACTGG 59.855 63.158 0.00 0.00 0.00 4.00
1944 3198 1.945387 CCACACTCCCAATCTCATCG 58.055 55.000 0.00 0.00 0.00 3.84
1975 3229 2.504585 AGAGCTGCATCTGATTCTCCAA 59.495 45.455 1.02 0.00 0.00 3.53
2052 3306 1.153469 GCTTTCCTCGAGAGCCTGG 60.153 63.158 15.71 0.00 34.32 4.45
2113 3368 5.300792 GTCCCCACACACATTAAAAGAAAGA 59.699 40.000 0.00 0.00 0.00 2.52
2130 3390 0.106918 TTTGTGTCCACAGTCCCCAC 60.107 55.000 0.00 0.00 42.94 4.61
2131 3391 0.182537 CTTTGTGTCCACAGTCCCCA 59.817 55.000 0.00 0.00 42.94 4.96
2132 3392 0.472471 TCTTTGTGTCCACAGTCCCC 59.528 55.000 0.00 0.00 42.94 4.81
2133 3393 1.416401 TCTCTTTGTGTCCACAGTCCC 59.584 52.381 0.00 0.00 42.94 4.46
2145 3405 8.571461 TCAGATAAAAATCAGCATCTCTTTGT 57.429 30.769 0.00 0.00 0.00 2.83
2228 3491 1.266175 CTGCTCCTGCTTCAACAACAG 59.734 52.381 0.00 0.00 40.48 3.16
2235 3498 1.519246 CGGATCTGCTCCTGCTTCA 59.481 57.895 0.00 0.00 42.47 3.02
2236 3499 1.227497 CCGGATCTGCTCCTGCTTC 60.227 63.158 0.00 0.00 42.47 3.86
2275 3538 5.053145 GCTAGTATGGAGTGTGAATTCAGG 58.947 45.833 8.80 0.00 0.00 3.86
2346 3610 5.481472 GTGCGAGTTAGATTTTATCACGTG 58.519 41.667 9.94 9.94 0.00 4.49
2357 3621 3.099267 GCATACAGGTGCGAGTTAGAT 57.901 47.619 0.00 0.00 35.10 1.98
2389 3678 1.533753 CCTCCTGCAGGCCCAAAAA 60.534 57.895 28.91 7.95 34.56 1.94
2562 3851 1.093159 GTTGGCCTCTGATGCTGAAG 58.907 55.000 3.32 0.00 0.00 3.02
2602 3891 7.377131 CAGATCCGAAGAAAACTGAAGAAAAAC 59.623 37.037 0.00 0.00 0.00 2.43
2622 3911 3.526931 TGCAGCAACTAGTACAGATCC 57.473 47.619 0.00 0.00 0.00 3.36
2668 3960 6.796705 AAAGACGTTAGGAAATCGAACAAT 57.203 33.333 0.00 0.00 31.64 2.71
2680 3972 1.539827 CCTGCCCAAAAAGACGTTAGG 59.460 52.381 0.00 0.00 0.00 2.69
2690 3982 2.192861 CGCACAGACCTGCCCAAAA 61.193 57.895 0.00 0.00 33.18 2.44
2694 3986 4.314440 TGACGCACAGACCTGCCC 62.314 66.667 0.00 0.00 33.18 5.36
2815 4208 1.373497 GATCTGGATAGTGGCGGCG 60.373 63.158 0.51 0.51 0.00 6.46
2827 4220 5.334646 CGTGAATATGGAATGCAAGATCTGG 60.335 44.000 0.00 0.00 0.00 3.86
2833 4226 5.233957 TGAACGTGAATATGGAATGCAAG 57.766 39.130 0.00 0.00 0.00 4.01
2928 4324 6.542370 AGTCCCTGAAATATAATGTTCCAACG 59.458 38.462 0.00 0.00 0.00 4.10
2929 4325 7.881775 AGTCCCTGAAATATAATGTTCCAAC 57.118 36.000 0.00 0.00 0.00 3.77
2933 4330 8.882415 TTCGTAGTCCCTGAAATATAATGTTC 57.118 34.615 0.00 0.00 0.00 3.18
2994 4392 1.293498 CTCCAGTGTCCGGACCTTG 59.707 63.158 31.19 25.96 0.00 3.61
3234 5948 2.110967 CCATCACTGCTTGCTCCGG 61.111 63.158 0.00 0.00 0.00 5.14
3257 5971 0.041312 CACAGGGAGCAAAAACGTCG 60.041 55.000 0.00 0.00 0.00 5.12
3272 5986 3.814268 CCCGCCGCATTTCCACAG 61.814 66.667 0.00 0.00 0.00 3.66
3297 6038 7.276878 CCTTCTTCTCTCTCTCGGAAATAAAAC 59.723 40.741 0.00 0.00 0.00 2.43
3306 6047 3.843999 CAAACCTTCTTCTCTCTCTCGG 58.156 50.000 0.00 0.00 0.00 4.63
3312 6053 0.799393 GCCGCAAACCTTCTTCTCTC 59.201 55.000 0.00 0.00 0.00 3.20
3313 6054 0.108585 TGCCGCAAACCTTCTTCTCT 59.891 50.000 0.00 0.00 0.00 3.10
3314 6055 0.519077 CTGCCGCAAACCTTCTTCTC 59.481 55.000 0.00 0.00 0.00 2.87
3315 6056 0.179018 ACTGCCGCAAACCTTCTTCT 60.179 50.000 0.00 0.00 0.00 2.85
3321 6062 1.523758 CTAAGAACTGCCGCAAACCT 58.476 50.000 0.00 0.00 0.00 3.50
3363 6104 8.886816 AAATACAAACGACGTAGAAGTAGTAG 57.113 34.615 0.00 0.00 30.00 2.57
3365 6106 7.483059 GCTAAATACAAACGACGTAGAAGTAGT 59.517 37.037 0.00 0.00 0.00 2.73
3366 6107 7.695618 AGCTAAATACAAACGACGTAGAAGTAG 59.304 37.037 0.00 0.00 0.00 2.57
3367 6108 7.482743 CAGCTAAATACAAACGACGTAGAAGTA 59.517 37.037 0.00 2.68 0.00 2.24
3368 6109 6.307318 CAGCTAAATACAAACGACGTAGAAGT 59.693 38.462 0.00 0.28 0.00 3.01
3370 6111 5.574055 CCAGCTAAATACAAACGACGTAGAA 59.426 40.000 0.00 0.00 0.00 2.10
3371 6112 5.097529 CCAGCTAAATACAAACGACGTAGA 58.902 41.667 0.00 0.00 0.00 2.59
3396 6137 3.549221 CGGCAAAAACCAAACTCATACGT 60.549 43.478 0.00 0.00 0.00 3.57
3589 6357 8.778358 AGTTGCTCTAAAGAAAAATACTGACTG 58.222 33.333 0.00 0.00 0.00 3.51
3590 6358 8.910351 AGTTGCTCTAAAGAAAAATACTGACT 57.090 30.769 0.00 0.00 0.00 3.41
3591 6359 9.952188 AAAGTTGCTCTAAAGAAAAATACTGAC 57.048 29.630 0.00 0.00 0.00 3.51
3618 6631 3.239449 TCCAGGCTAGACTGACTGAAAA 58.761 45.455 27.97 0.29 45.56 2.29
3619 6632 2.889512 TCCAGGCTAGACTGACTGAAA 58.110 47.619 27.97 2.08 45.56 2.69
3622 6635 3.902881 ATTTCCAGGCTAGACTGACTG 57.097 47.619 27.97 10.65 42.50 3.51
3623 6636 3.118956 CGAATTTCCAGGCTAGACTGACT 60.119 47.826 27.97 5.88 40.97 3.41
3624 6637 3.190874 CGAATTTCCAGGCTAGACTGAC 58.809 50.000 27.97 9.46 40.97 3.51
3625 6638 2.832129 ACGAATTTCCAGGCTAGACTGA 59.168 45.455 27.97 7.64 40.97 3.41
3626 6639 3.252974 ACGAATTTCCAGGCTAGACTG 57.747 47.619 19.53 19.53 38.21 3.51
3628 6641 5.585047 ACATTTACGAATTTCCAGGCTAGAC 59.415 40.000 0.00 0.00 0.00 2.59
3629 6642 5.584649 CACATTTACGAATTTCCAGGCTAGA 59.415 40.000 0.00 0.00 0.00 2.43
3631 6644 5.353123 GTCACATTTACGAATTTCCAGGCTA 59.647 40.000 0.00 0.00 0.00 3.93
3634 6647 4.700213 AGGTCACATTTACGAATTTCCAGG 59.300 41.667 0.00 0.00 0.00 4.45
3635 6648 5.181245 ACAGGTCACATTTACGAATTTCCAG 59.819 40.000 0.00 0.00 0.00 3.86
3636 6649 5.067273 ACAGGTCACATTTACGAATTTCCA 58.933 37.500 0.00 0.00 0.00 3.53
3637 6650 5.622770 ACAGGTCACATTTACGAATTTCC 57.377 39.130 0.00 0.00 0.00 3.13
3638 6651 5.342259 GCAACAGGTCACATTTACGAATTTC 59.658 40.000 0.00 0.00 0.00 2.17
3639 6652 5.219633 GCAACAGGTCACATTTACGAATTT 58.780 37.500 0.00 0.00 0.00 1.82
3640 6653 4.612712 CGCAACAGGTCACATTTACGAATT 60.613 41.667 0.00 0.00 0.00 2.17
3643 6656 1.795872 CGCAACAGGTCACATTTACGA 59.204 47.619 0.00 0.00 0.00 3.43
3644 6657 1.795872 TCGCAACAGGTCACATTTACG 59.204 47.619 0.00 0.00 0.00 3.18
3645 6658 2.412847 GCTCGCAACAGGTCACATTTAC 60.413 50.000 0.00 0.00 0.00 2.01
3688 6701 3.554934 CCCATGTATAAAGCTTCAGGCA 58.445 45.455 0.00 0.00 44.79 4.75
3691 6704 2.549754 CGGCCCATGTATAAAGCTTCAG 59.450 50.000 0.00 0.00 0.00 3.02
3848 6861 7.323420 TGAATCTGTTACATAGAGGTGAACAG 58.677 38.462 6.71 6.71 45.37 3.16
3899 6912 8.881743 CATTTTCCTCTTCATTTTTGAAACACA 58.118 29.630 0.00 0.00 0.00 3.72
4165 7199 7.432148 AAAAACTTTGTTTCCACCTATCCTT 57.568 32.000 0.00 0.00 0.00 3.36
4220 7255 4.083565 TGGGCCAACCTAGTAACATTTTC 58.916 43.478 2.13 0.00 41.11 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.