Multiple sequence alignment - TraesCS5A01G209900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G209900 chr5A 100.000 2337 0 0 1 2337 423138772 423141108 0.000000e+00 4316
1 TraesCS5A01G209900 chr6A 95.149 536 23 3 829 1362 38722958 38723492 0.000000e+00 843
2 TraesCS5A01G209900 chr6A 95.122 533 23 3 831 1361 97697083 97696552 0.000000e+00 837
3 TraesCS5A01G209900 chr6A 84.186 215 24 9 1360 1568 365514152 365513942 1.420000e-47 200
4 TraesCS5A01G209900 chr6A 83.721 215 25 6 1361 1568 572130383 572130594 6.590000e-46 195
5 TraesCS5A01G209900 chr4D 94.227 537 27 4 829 1363 469445003 469444469 0.000000e+00 817
6 TraesCS5A01G209900 chr5D 86.410 780 60 16 1563 2337 325033725 325034463 0.000000e+00 811
7 TraesCS5A01G209900 chr5D 84.606 864 57 30 1 837 325032803 325033617 0.000000e+00 789
8 TraesCS5A01G209900 chr2D 93.889 540 30 3 829 1366 308681907 308681369 0.000000e+00 811
9 TraesCS5A01G209900 chr2D 93.704 540 31 3 829 1366 308678476 308677938 0.000000e+00 806
10 TraesCS5A01G209900 chr2D 83.721 215 26 8 1360 1568 391551219 391551008 6.590000e-46 195
11 TraesCS5A01G209900 chr2B 93.855 537 31 2 829 1363 793363793 793364329 0.000000e+00 808
12 TraesCS5A01G209900 chr1A 93.832 535 30 3 829 1361 213936501 213937034 0.000000e+00 802
13 TraesCS5A01G209900 chr3A 93.657 536 32 2 829 1362 746980188 746979653 0.000000e+00 800
14 TraesCS5A01G209900 chr3A 83.857 223 26 9 1360 1576 121635352 121635134 1.090000e-48 204
15 TraesCS5A01G209900 chr7B 93.199 544 33 4 829 1369 633268774 633269316 0.000000e+00 797
16 TraesCS5A01G209900 chr5B 83.553 760 55 26 1 727 377488128 377488850 0.000000e+00 647
17 TraesCS5A01G209900 chr5B 78.205 624 59 38 1563 2177 377489684 377490239 6.230000e-86 327
18 TraesCS5A01G209900 chr7D 83.721 215 26 8 1360 1568 174489080 174488869 6.590000e-46 195
19 TraesCS5A01G209900 chr7D 83.721 215 25 9 1360 1568 326252498 326252288 6.590000e-46 195
20 TraesCS5A01G209900 chr7D 83.721 215 26 8 1360 1568 379937526 379937737 6.590000e-46 195
21 TraesCS5A01G209900 chr7A 83.721 215 26 8 1360 1568 290819159 290819370 6.590000e-46 195
22 TraesCS5A01G209900 chr1D 83.721 215 26 8 1360 1568 453849710 453849499 6.590000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G209900 chr5A 423138772 423141108 2336 False 4316.0 4316 100.0000 1 2337 1 chr5A.!!$F1 2336
1 TraesCS5A01G209900 chr6A 38722958 38723492 534 False 843.0 843 95.1490 829 1362 1 chr6A.!!$F1 533
2 TraesCS5A01G209900 chr6A 97696552 97697083 531 True 837.0 837 95.1220 831 1361 1 chr6A.!!$R1 530
3 TraesCS5A01G209900 chr4D 469444469 469445003 534 True 817.0 817 94.2270 829 1363 1 chr4D.!!$R1 534
4 TraesCS5A01G209900 chr5D 325032803 325034463 1660 False 800.0 811 85.5080 1 2337 2 chr5D.!!$F1 2336
5 TraesCS5A01G209900 chr2D 308677938 308681907 3969 True 808.5 811 93.7965 829 1366 2 chr2D.!!$R2 537
6 TraesCS5A01G209900 chr2B 793363793 793364329 536 False 808.0 808 93.8550 829 1363 1 chr2B.!!$F1 534
7 TraesCS5A01G209900 chr1A 213936501 213937034 533 False 802.0 802 93.8320 829 1361 1 chr1A.!!$F1 532
8 TraesCS5A01G209900 chr3A 746979653 746980188 535 True 800.0 800 93.6570 829 1362 1 chr3A.!!$R2 533
9 TraesCS5A01G209900 chr7B 633268774 633269316 542 False 797.0 797 93.1990 829 1369 1 chr7B.!!$F1 540
10 TraesCS5A01G209900 chr5B 377488128 377490239 2111 False 487.0 647 80.8790 1 2177 2 chr5B.!!$F1 2176

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 196 0.032952 GCCACTTCGCCACCGATATA 59.967 55.0 0.0 0.0 43.97 0.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 4873 0.62099 TACCCCCGGATACAGGCAAA 60.621 55.0 0.73 0.0 30.29 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.874231 CAGCTGATGTGATGCCATCTC 59.126 52.381 8.42 2.88 41.47 2.75
35 36 2.060567 ATGTGATGCCATCTCCCCCG 62.061 60.000 6.21 0.00 0.00 5.73
42 44 1.201429 GCCATCTCCCCCGGATATGT 61.201 60.000 0.73 0.00 35.40 2.29
46 48 1.568504 TCTCCCCCGGATATGTATGC 58.431 55.000 0.73 0.00 0.00 3.14
47 49 0.175760 CTCCCCCGGATATGTATGCG 59.824 60.000 0.73 6.91 45.36 4.73
89 98 3.336715 CTAAAGCGGCCGGGCAAAC 62.337 63.158 29.38 16.49 34.64 2.93
115 126 4.518970 AGATGCGTTGTGTCTGGTTAAATT 59.481 37.500 0.00 0.00 0.00 1.82
164 194 1.966901 ATGCCACTTCGCCACCGATA 61.967 55.000 0.00 0.00 43.97 2.92
165 195 1.227556 GCCACTTCGCCACCGATAT 60.228 57.895 0.00 0.00 43.97 1.63
166 196 0.032952 GCCACTTCGCCACCGATATA 59.967 55.000 0.00 0.00 43.97 0.86
167 197 1.337823 GCCACTTCGCCACCGATATAT 60.338 52.381 0.00 0.00 43.97 0.86
168 198 2.094390 GCCACTTCGCCACCGATATATA 60.094 50.000 0.00 0.00 43.97 0.86
229 264 1.069568 CCGAATGATCCGTCTCTCGAG 60.070 57.143 5.93 5.93 42.86 4.04
249 284 0.984995 AGTTCCAGCTCCACTAACCC 59.015 55.000 0.00 0.00 0.00 4.11
250 285 0.984995 GTTCCAGCTCCACTAACCCT 59.015 55.000 0.00 0.00 0.00 4.34
251 286 2.185387 GTTCCAGCTCCACTAACCCTA 58.815 52.381 0.00 0.00 0.00 3.53
252 287 2.570302 GTTCCAGCTCCACTAACCCTAA 59.430 50.000 0.00 0.00 0.00 2.69
253 288 2.910544 TCCAGCTCCACTAACCCTAAA 58.089 47.619 0.00 0.00 0.00 1.85
324 359 1.605753 AGAGTACTCACGCACTCACA 58.394 50.000 24.44 0.00 42.99 3.58
335 370 0.312102 GCACTCACAAGAACCTTGGC 59.688 55.000 10.91 1.45 0.00 4.52
336 371 1.972872 CACTCACAAGAACCTTGGCT 58.027 50.000 10.91 0.00 0.00 4.75
343 379 4.466015 TCACAAGAACCTTGGCTTTTTCTT 59.534 37.500 10.91 0.00 38.55 2.52
348 384 6.392625 AGAACCTTGGCTTTTTCTTTAGTC 57.607 37.500 0.00 0.00 0.00 2.59
390 426 3.249320 CACAATCATTGGAGCTCCGTATG 59.751 47.826 28.92 28.92 39.43 2.39
393 430 0.940126 CATTGGAGCTCCGTATGTGC 59.060 55.000 27.49 7.30 39.43 4.57
431 472 5.085390 CGTCTAATGTGATATCGCTCTCAG 58.915 45.833 16.85 8.96 0.00 3.35
437 486 0.387878 GATATCGCTCTCAGCCCACG 60.388 60.000 0.00 0.00 38.18 4.94
455 504 1.073923 ACGGCAAAGTGGAAGAAGGAT 59.926 47.619 0.00 0.00 0.00 3.24
498 548 1.714794 AGGCGAAAGTGAAGACGATG 58.285 50.000 0.00 0.00 0.00 3.84
516 566 3.529533 GATGGATCGATGGATTGCTAGG 58.470 50.000 0.54 0.00 31.51 3.02
563 613 4.467735 GAACTGAGCCTTTTAGAAAAGCG 58.532 43.478 8.90 4.62 43.07 4.68
568 618 1.463444 GCCTTTTAGAAAAGCGCGAGA 59.537 47.619 12.10 0.00 43.07 4.04
570 620 2.737252 CCTTTTAGAAAAGCGCGAGACT 59.263 45.455 12.10 3.51 43.07 3.24
571 621 3.423645 CCTTTTAGAAAAGCGCGAGACTG 60.424 47.826 12.10 0.00 43.07 3.51
572 622 2.433868 TTAGAAAAGCGCGAGACTGT 57.566 45.000 12.10 0.00 0.00 3.55
573 623 1.698165 TAGAAAAGCGCGAGACTGTG 58.302 50.000 12.10 0.00 0.00 3.66
574 624 0.946221 AGAAAAGCGCGAGACTGTGG 60.946 55.000 12.10 0.00 0.00 4.17
575 625 0.944311 GAAAAGCGCGAGACTGTGGA 60.944 55.000 12.10 0.00 0.00 4.02
576 626 0.946221 AAAAGCGCGAGACTGTGGAG 60.946 55.000 12.10 0.00 0.00 3.86
577 627 3.923563 AAGCGCGAGACTGTGGAGC 62.924 63.158 12.10 0.00 0.00 4.70
581 631 4.056125 CGAGACTGTGGAGCCGCA 62.056 66.667 2.41 2.41 35.02 5.69
582 632 2.581354 GAGACTGTGGAGCCGCAT 59.419 61.111 2.85 0.00 35.78 4.73
583 633 1.078848 GAGACTGTGGAGCCGCATT 60.079 57.895 2.85 0.00 35.78 3.56
584 634 1.078848 AGACTGTGGAGCCGCATTC 60.079 57.895 11.21 11.21 36.70 2.67
585 635 2.045926 ACTGTGGAGCCGCATTCC 60.046 61.111 2.85 0.00 35.78 3.01
586 636 2.046023 CTGTGGAGCCGCATTCCA 60.046 61.111 2.85 0.00 42.30 3.53
626 676 1.906824 GGAGGAGTGGACACGGACA 60.907 63.158 0.00 0.00 36.20 4.02
691 742 1.361668 CCGGATCACCTTTCGCACTG 61.362 60.000 0.00 0.00 0.00 3.66
703 754 5.106673 ACCTTTCGCACTGTTTTATCTTAGC 60.107 40.000 0.00 0.00 0.00 3.09
704 755 4.939509 TTCGCACTGTTTTATCTTAGCC 57.060 40.909 0.00 0.00 0.00 3.93
727 780 5.237815 CACCACTAATAAAGAGCACTGTGA 58.762 41.667 12.86 0.00 0.00 3.58
749 813 7.397476 TGTGATTACCAGTAAATTAATTGGGCA 59.603 33.333 0.39 0.00 34.99 5.36
763 827 4.527509 ATTGGGCATCGAGATAGTAGTG 57.472 45.455 0.00 0.00 0.00 2.74
766 830 2.352225 GGGCATCGAGATAGTAGTGCTG 60.352 54.545 3.66 0.00 33.38 4.41
767 831 2.352225 GGCATCGAGATAGTAGTGCTGG 60.352 54.545 3.66 0.00 33.38 4.85
768 832 2.294791 GCATCGAGATAGTAGTGCTGGT 59.705 50.000 0.00 0.00 0.00 4.00
769 833 3.502595 GCATCGAGATAGTAGTGCTGGTA 59.497 47.826 0.00 0.00 0.00 3.25
770 834 4.614078 GCATCGAGATAGTAGTGCTGGTAC 60.614 50.000 0.00 0.00 0.00 3.34
771 835 4.418973 TCGAGATAGTAGTGCTGGTACT 57.581 45.455 0.00 0.00 34.96 2.73
772 836 4.378774 TCGAGATAGTAGTGCTGGTACTC 58.621 47.826 0.00 0.00 32.81 2.59
773 837 3.499157 CGAGATAGTAGTGCTGGTACTCC 59.501 52.174 0.00 0.00 32.81 3.85
774 838 3.822167 GAGATAGTAGTGCTGGTACTCCC 59.178 52.174 0.00 0.00 32.81 4.30
775 839 3.464080 AGATAGTAGTGCTGGTACTCCCT 59.536 47.826 0.00 0.00 32.81 4.20
776 840 2.146920 AGTAGTGCTGGTACTCCCTC 57.853 55.000 0.00 0.00 32.19 4.30
777 841 1.641714 AGTAGTGCTGGTACTCCCTCT 59.358 52.381 0.00 0.00 32.19 3.69
778 842 1.751924 GTAGTGCTGGTACTCCCTCTG 59.248 57.143 0.00 0.00 32.19 3.35
779 843 0.115349 AGTGCTGGTACTCCCTCTGT 59.885 55.000 0.00 0.00 0.00 3.41
780 844 0.977395 GTGCTGGTACTCCCTCTGTT 59.023 55.000 0.00 0.00 0.00 3.16
781 845 1.066787 GTGCTGGTACTCCCTCTGTTC 60.067 57.143 0.00 0.00 0.00 3.18
782 846 1.203187 TGCTGGTACTCCCTCTGTTCT 60.203 52.381 0.00 0.00 0.00 3.01
783 847 1.903183 GCTGGTACTCCCTCTGTTCTT 59.097 52.381 0.00 0.00 0.00 2.52
784 848 3.097614 GCTGGTACTCCCTCTGTTCTTA 58.902 50.000 0.00 0.00 0.00 2.10
785 849 3.707102 GCTGGTACTCCCTCTGTTCTTAT 59.293 47.826 0.00 0.00 0.00 1.73
786 850 4.162509 GCTGGTACTCCCTCTGTTCTTATT 59.837 45.833 0.00 0.00 0.00 1.40
787 851 5.338463 GCTGGTACTCCCTCTGTTCTTATTT 60.338 44.000 0.00 0.00 0.00 1.40
788 852 6.127140 GCTGGTACTCCCTCTGTTCTTATTTA 60.127 42.308 0.00 0.00 0.00 1.40
789 853 7.419711 TGGTACTCCCTCTGTTCTTATTTAG 57.580 40.000 0.00 0.00 0.00 1.85
790 854 6.958192 TGGTACTCCCTCTGTTCTTATTTAGT 59.042 38.462 0.00 0.00 0.00 2.24
791 855 7.123847 TGGTACTCCCTCTGTTCTTATTTAGTC 59.876 40.741 0.00 0.00 0.00 2.59
792 856 6.547930 ACTCCCTCTGTTCTTATTTAGTCC 57.452 41.667 0.00 0.00 0.00 3.85
793 857 5.127356 ACTCCCTCTGTTCTTATTTAGTCCG 59.873 44.000 0.00 0.00 0.00 4.79
794 858 5.266788 TCCCTCTGTTCTTATTTAGTCCGA 58.733 41.667 0.00 0.00 0.00 4.55
795 859 5.360144 TCCCTCTGTTCTTATTTAGTCCGAG 59.640 44.000 0.00 0.00 0.00 4.63
796 860 5.127356 CCCTCTGTTCTTATTTAGTCCGAGT 59.873 44.000 0.00 0.00 0.00 4.18
797 861 6.320672 CCCTCTGTTCTTATTTAGTCCGAGTA 59.679 42.308 0.00 0.00 0.00 2.59
798 862 7.014422 CCCTCTGTTCTTATTTAGTCCGAGTAT 59.986 40.741 0.00 0.00 0.00 2.12
799 863 8.414778 CCTCTGTTCTTATTTAGTCCGAGTATT 58.585 37.037 0.00 0.00 0.00 1.89
802 866 9.182933 CTGTTCTTATTTAGTCCGAGTATTAGC 57.817 37.037 0.00 0.00 0.00 3.09
803 867 8.910944 TGTTCTTATTTAGTCCGAGTATTAGCT 58.089 33.333 0.00 0.00 0.00 3.32
804 868 9.396938 GTTCTTATTTAGTCCGAGTATTAGCTC 57.603 37.037 0.00 0.00 0.00 4.09
805 869 8.921353 TCTTATTTAGTCCGAGTATTAGCTCT 57.079 34.615 0.00 0.00 33.55 4.09
806 870 9.001542 TCTTATTTAGTCCGAGTATTAGCTCTC 57.998 37.037 0.00 0.00 33.55 3.20
807 871 8.687292 TTATTTAGTCCGAGTATTAGCTCTCA 57.313 34.615 0.00 0.00 33.55 3.27
808 872 7.768807 ATTTAGTCCGAGTATTAGCTCTCAT 57.231 36.000 0.00 0.00 33.55 2.90
809 873 6.804770 TTAGTCCGAGTATTAGCTCTCATC 57.195 41.667 0.00 0.00 33.55 2.92
810 874 4.720046 AGTCCGAGTATTAGCTCTCATCA 58.280 43.478 0.00 0.00 33.55 3.07
811 875 5.133941 AGTCCGAGTATTAGCTCTCATCAA 58.866 41.667 0.00 0.00 33.55 2.57
812 876 5.594725 AGTCCGAGTATTAGCTCTCATCAAA 59.405 40.000 0.00 0.00 33.55 2.69
813 877 5.918011 GTCCGAGTATTAGCTCTCATCAAAG 59.082 44.000 0.00 0.00 33.55 2.77
814 878 5.594725 TCCGAGTATTAGCTCTCATCAAAGT 59.405 40.000 0.00 0.00 33.55 2.66
815 879 5.918011 CCGAGTATTAGCTCTCATCAAAGTC 59.082 44.000 0.00 0.00 33.55 3.01
816 880 6.460261 CCGAGTATTAGCTCTCATCAAAGTCA 60.460 42.308 0.00 0.00 33.55 3.41
817 881 6.975197 CGAGTATTAGCTCTCATCAAAGTCAA 59.025 38.462 0.00 0.00 33.55 3.18
818 882 7.167302 CGAGTATTAGCTCTCATCAAAGTCAAG 59.833 40.741 0.00 0.00 33.55 3.02
819 883 6.760770 AGTATTAGCTCTCATCAAAGTCAAGC 59.239 38.462 0.00 0.00 0.00 4.01
820 884 3.699411 AGCTCTCATCAAAGTCAAGCT 57.301 42.857 0.00 0.00 33.97 3.74
821 885 4.018484 AGCTCTCATCAAAGTCAAGCTT 57.982 40.909 0.00 0.00 35.17 3.74
984 1048 5.208121 GGGGGAAATGGTAAGATTGATTGA 58.792 41.667 0.00 0.00 0.00 2.57
991 1055 6.778834 ATGGTAAGATTGATTGATGTGCAA 57.221 33.333 0.00 0.00 41.53 4.08
1100 1164 7.061054 TCGGATAATATGGAGGTTATCGAGAT 58.939 38.462 0.00 0.00 37.90 2.75
1234 1300 7.591006 CAAATAAAATTGCTCATGAACTGCT 57.409 32.000 6.93 0.00 0.00 4.24
1472 2539 9.599322 CTTTCACATCATATAGATTTTTACGGC 57.401 33.333 0.00 0.00 33.72 5.68
1473 2540 8.669946 TTCACATCATATAGATTTTTACGGCA 57.330 30.769 0.00 0.00 33.72 5.69
1477 2544 9.897744 ACATCATATAGATTTTTACGGCAAATG 57.102 29.630 0.00 0.00 33.72 2.32
1546 2756 5.186021 ACTTCAGTCAGACCTAACATGTAGG 59.814 44.000 15.67 15.67 40.49 3.18
1553 2763 7.842743 AGTCAGACCTAACATGTAGGGTAATAA 59.157 37.037 18.69 6.37 39.00 1.40
1554 2764 8.480501 GTCAGACCTAACATGTAGGGTAATAAA 58.519 37.037 18.69 5.04 39.00 1.40
1555 2765 9.049050 TCAGACCTAACATGTAGGGTAATAAAA 57.951 33.333 18.69 3.99 39.00 1.52
1556 2766 9.675464 CAGACCTAACATGTAGGGTAATAAAAA 57.325 33.333 18.69 0.00 39.00 1.94
1557 2767 9.676861 AGACCTAACATGTAGGGTAATAAAAAC 57.323 33.333 18.69 7.51 39.00 2.43
1558 2768 8.496707 ACCTAACATGTAGGGTAATAAAAACG 57.503 34.615 17.63 0.00 39.00 3.60
1559 2769 7.553760 ACCTAACATGTAGGGTAATAAAAACGG 59.446 37.037 17.63 0.00 39.00 4.44
1560 2770 7.769970 CCTAACATGTAGGGTAATAAAAACGGA 59.230 37.037 0.00 0.00 0.00 4.69
1561 2771 7.619964 AACATGTAGGGTAATAAAAACGGAG 57.380 36.000 0.00 0.00 0.00 4.63
1622 4260 1.608283 GCTACAGGAGTGTGTGGTTCC 60.608 57.143 0.00 0.00 37.52 3.62
1631 4269 1.890510 GTGTGGTTCCGTGACACCC 60.891 63.158 0.00 0.00 35.04 4.61
1658 4296 2.269241 CCAGAAGCTTCCGGTCCC 59.731 66.667 22.81 0.00 0.00 4.46
1660 4298 2.603776 AGAAGCTTCCGGTCCCGT 60.604 61.111 22.81 0.00 37.81 5.28
1665 4303 4.430765 CTTCCGGTCCCGTCGTGG 62.431 72.222 0.00 0.00 37.81 4.94
1720 4358 0.399806 AGAAGGGAGGAGCCTGGATC 60.400 60.000 2.64 2.64 36.66 3.36
1821 4519 4.175337 CACATGGCGGACGGGGAT 62.175 66.667 0.00 0.00 0.00 3.85
1930 4628 1.226323 CTCGGACGTAGCGAACTGG 60.226 63.158 0.00 0.00 0.00 4.00
1936 4634 2.615912 GGACGTAGCGAACTGGTATACT 59.384 50.000 2.25 0.00 32.25 2.12
1951 4651 1.368641 ATACTGTACACGTACGCCGA 58.631 50.000 16.72 0.00 38.85 5.54
2083 4845 2.677524 ACGGGTCGACGGATTGGA 60.678 61.111 9.92 0.00 38.39 3.53
2087 4849 2.582498 GTCGACGGATTGGAGCGG 60.582 66.667 0.00 0.00 0.00 5.52
2109 4871 2.733671 CGTGCGTGATGGCTCTGTG 61.734 63.158 0.00 0.00 0.00 3.66
2110 4872 1.669115 GTGCGTGATGGCTCTGTGT 60.669 57.895 0.00 0.00 0.00 3.72
2111 4873 1.071299 TGCGTGATGGCTCTGTGTT 59.929 52.632 0.00 0.00 0.00 3.32
2189 4951 0.947180 TTTCCTACTTGCGCACCGTC 60.947 55.000 11.12 0.00 0.00 4.79
2213 4975 2.058675 CCTCCTTGGGTCGTCAAGT 58.941 57.895 12.23 0.00 41.72 3.16
2214 4976 0.037232 CCTCCTTGGGTCGTCAAGTC 60.037 60.000 12.23 0.00 41.72 3.01
2215 4977 0.969894 CTCCTTGGGTCGTCAAGTCT 59.030 55.000 12.23 0.00 41.72 3.24
2216 4978 0.679505 TCCTTGGGTCGTCAAGTCTG 59.320 55.000 12.23 2.05 41.72 3.51
2217 4979 0.320771 CCTTGGGTCGTCAAGTCTGG 60.321 60.000 12.23 0.00 41.72 3.86
2218 4980 0.393077 CTTGGGTCGTCAAGTCTGGT 59.607 55.000 7.42 0.00 39.27 4.00
2219 4981 1.616865 CTTGGGTCGTCAAGTCTGGTA 59.383 52.381 7.42 0.00 39.27 3.25
2221 4983 1.342174 TGGGTCGTCAAGTCTGGTAAC 59.658 52.381 0.00 0.00 0.00 2.50
2222 4984 1.668047 GGGTCGTCAAGTCTGGTAACG 60.668 57.143 0.00 0.00 42.51 3.18
2224 4986 2.693797 TCGTCAAGTCTGGTAACGAC 57.306 50.000 0.00 0.00 37.43 4.34
2225 4987 1.069703 TCGTCAAGTCTGGTAACGACG 60.070 52.381 0.00 0.00 45.56 5.12
2226 4988 1.069703 CGTCAAGTCTGGTAACGACGA 60.070 52.381 0.00 0.00 46.76 4.20
2227 4989 2.602933 CGTCAAGTCTGGTAACGACGAA 60.603 50.000 0.00 0.00 46.76 3.85
2254 5016 3.043586 GCTTCTATACACGGACGATGTG 58.956 50.000 0.00 0.00 42.99 3.21
2257 5019 2.117137 CTATACACGGACGATGTGCAC 58.883 52.381 10.75 10.75 41.03 4.57
2292 5055 1.164041 CCGTGCCGAAACAAGGTTCT 61.164 55.000 0.00 0.00 34.83 3.01
2294 5057 0.310854 GTGCCGAAACAAGGTTCTGG 59.689 55.000 0.00 1.09 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.108329 GTCGCATACATATCCGGGGG 60.108 60.000 0.00 0.00 0.00 5.40
35 36 2.347697 TGCTCGTCGCATACATATCC 57.652 50.000 0.00 0.00 45.47 2.59
89 98 1.354337 CCAGACACAACGCATCTCGG 61.354 60.000 0.00 0.00 43.86 4.63
91 100 1.512926 AACCAGACACAACGCATCTC 58.487 50.000 0.00 0.00 0.00 2.75
115 126 2.432444 CCCTGTTTTGGATAGCGTGAA 58.568 47.619 0.00 0.00 0.00 3.18
157 187 7.358066 ACCGCTTCGTATATTATATATCGGTG 58.642 38.462 16.37 10.41 42.77 4.94
164 194 7.924412 CCACCATTACCGCTTCGTATATTATAT 59.076 37.037 0.00 0.00 0.00 0.86
165 195 7.093814 ACCACCATTACCGCTTCGTATATTATA 60.094 37.037 0.00 0.00 0.00 0.98
166 196 6.103997 CCACCATTACCGCTTCGTATATTAT 58.896 40.000 0.00 0.00 0.00 1.28
167 197 5.010922 ACCACCATTACCGCTTCGTATATTA 59.989 40.000 0.00 0.00 0.00 0.98
168 198 4.202284 ACCACCATTACCGCTTCGTATATT 60.202 41.667 0.00 0.00 0.00 1.28
209 244 0.945099 TCGAGAGACGGATCATTCGG 59.055 55.000 0.00 0.00 42.82 4.30
229 264 1.066071 GGGTTAGTGGAGCTGGAACTC 60.066 57.143 0.00 0.00 35.86 3.01
249 284 4.360563 ACGCTCGAATCCACACTATTTAG 58.639 43.478 0.00 0.00 0.00 1.85
250 285 4.380841 ACGCTCGAATCCACACTATTTA 57.619 40.909 0.00 0.00 0.00 1.40
251 286 3.247006 ACGCTCGAATCCACACTATTT 57.753 42.857 0.00 0.00 0.00 1.40
252 287 2.961526 ACGCTCGAATCCACACTATT 57.038 45.000 0.00 0.00 0.00 1.73
253 288 2.950309 ACTACGCTCGAATCCACACTAT 59.050 45.455 0.00 0.00 0.00 2.12
315 350 0.588252 CCAAGGTTCTTGTGAGTGCG 59.412 55.000 6.86 0.00 0.00 5.34
324 359 6.459710 CGACTAAAGAAAAAGCCAAGGTTCTT 60.460 38.462 0.00 0.00 41.02 2.52
335 370 3.188667 GTGCCCTCCGACTAAAGAAAAAG 59.811 47.826 0.00 0.00 0.00 2.27
336 371 3.143728 GTGCCCTCCGACTAAAGAAAAA 58.856 45.455 0.00 0.00 0.00 1.94
343 379 1.229082 AGTGGTGCCCTCCGACTAA 60.229 57.895 0.00 0.00 0.00 2.24
365 401 1.064463 GGAGCTCCAATGATTGTGGGA 60.064 52.381 28.43 0.00 36.73 4.37
366 402 1.396653 GGAGCTCCAATGATTGTGGG 58.603 55.000 28.43 0.00 36.73 4.61
367 403 1.019673 CGGAGCTCCAATGATTGTGG 58.980 55.000 31.67 8.04 37.51 4.17
390 426 1.812571 ACGGAGGATTTTGTCATGCAC 59.187 47.619 0.00 0.00 0.00 4.57
393 430 5.586243 ACATTAGACGGAGGATTTTGTCATG 59.414 40.000 0.00 0.00 33.83 3.07
437 486 5.476945 TCTTTTATCCTTCTTCCACTTTGCC 59.523 40.000 0.00 0.00 0.00 4.52
474 523 3.441222 TCGTCTTCACTTTCGCCTATGTA 59.559 43.478 0.00 0.00 0.00 2.29
475 524 2.230508 TCGTCTTCACTTTCGCCTATGT 59.769 45.455 0.00 0.00 0.00 2.29
476 525 2.876091 TCGTCTTCACTTTCGCCTATG 58.124 47.619 0.00 0.00 0.00 2.23
478 527 2.416836 CCATCGTCTTCACTTTCGCCTA 60.417 50.000 0.00 0.00 0.00 3.93
498 548 2.693069 CACCTAGCAATCCATCGATCC 58.307 52.381 0.00 0.00 0.00 3.36
516 566 1.302033 CGGGGGATGATGCTAGCAC 60.302 63.158 22.07 14.47 0.00 4.40
545 595 1.196808 CGCGCTTTTCTAAAAGGCTCA 59.803 47.619 15.11 0.00 44.24 4.26
568 618 2.045926 GGAATGCGGCTCCACAGT 60.046 61.111 0.00 0.00 32.77 3.55
570 620 1.228398 TTTGGAATGCGGCTCCACA 60.228 52.632 10.21 2.02 42.76 4.17
571 621 1.212751 GTTTGGAATGCGGCTCCAC 59.787 57.895 10.21 0.00 42.76 4.02
572 622 1.228398 TGTTTGGAATGCGGCTCCA 60.228 52.632 6.85 6.85 41.33 3.86
573 623 0.960364 TCTGTTTGGAATGCGGCTCC 60.960 55.000 0.00 0.85 0.00 4.70
574 624 0.881118 TTCTGTTTGGAATGCGGCTC 59.119 50.000 0.00 0.00 0.00 4.70
575 625 1.000274 GTTTCTGTTTGGAATGCGGCT 60.000 47.619 0.00 0.00 0.00 5.52
576 626 1.269517 TGTTTCTGTTTGGAATGCGGC 60.270 47.619 0.00 0.00 0.00 6.53
577 627 2.791383 TGTTTCTGTTTGGAATGCGG 57.209 45.000 0.00 0.00 0.00 5.69
578 628 2.988493 CCATGTTTCTGTTTGGAATGCG 59.012 45.455 0.00 0.00 0.00 4.73
579 629 3.328505 CCCATGTTTCTGTTTGGAATGC 58.671 45.455 0.00 0.00 0.00 3.56
580 630 3.007182 AGCCCATGTTTCTGTTTGGAATG 59.993 43.478 0.00 0.00 0.00 2.67
581 631 3.007182 CAGCCCATGTTTCTGTTTGGAAT 59.993 43.478 0.00 0.00 0.00 3.01
582 632 2.364970 CAGCCCATGTTTCTGTTTGGAA 59.635 45.455 0.00 0.00 0.00 3.53
583 633 1.962807 CAGCCCATGTTTCTGTTTGGA 59.037 47.619 0.00 0.00 0.00 3.53
584 634 1.001181 CCAGCCCATGTTTCTGTTTGG 59.999 52.381 0.00 0.00 0.00 3.28
585 635 1.962807 TCCAGCCCATGTTTCTGTTTG 59.037 47.619 0.00 0.00 0.00 2.93
586 636 1.963515 GTCCAGCCCATGTTTCTGTTT 59.036 47.619 0.00 0.00 0.00 2.83
626 676 2.686405 GGTGACCCGACTGTTTTTCTTT 59.314 45.455 0.00 0.00 0.00 2.52
670 721 3.202706 GCGAAAGGTGATCCGGGC 61.203 66.667 0.00 0.00 39.05 6.13
671 722 2.106683 GTGCGAAAGGTGATCCGGG 61.107 63.158 0.00 0.00 39.05 5.73
703 754 4.393062 CACAGTGCTCTTTATTAGTGGTGG 59.607 45.833 0.00 0.00 0.00 4.61
704 755 5.237815 TCACAGTGCTCTTTATTAGTGGTG 58.762 41.667 0.00 0.00 0.00 4.17
727 780 7.504238 TCGATGCCCAATTAATTTACTGGTAAT 59.496 33.333 0.00 0.00 0.00 1.89
749 813 4.975631 AGTACCAGCACTACTATCTCGAT 58.024 43.478 0.00 0.00 0.00 3.59
763 827 1.562783 AGAACAGAGGGAGTACCAGC 58.437 55.000 0.00 0.00 43.89 4.85
766 830 7.417683 GGACTAAATAAGAACAGAGGGAGTACC 60.418 44.444 0.00 0.00 40.67 3.34
767 831 7.490840 GGACTAAATAAGAACAGAGGGAGTAC 58.509 42.308 0.00 0.00 0.00 2.73
768 832 6.320672 CGGACTAAATAAGAACAGAGGGAGTA 59.679 42.308 0.00 0.00 0.00 2.59
769 833 5.127356 CGGACTAAATAAGAACAGAGGGAGT 59.873 44.000 0.00 0.00 0.00 3.85
770 834 5.360144 TCGGACTAAATAAGAACAGAGGGAG 59.640 44.000 0.00 0.00 0.00 4.30
771 835 5.266788 TCGGACTAAATAAGAACAGAGGGA 58.733 41.667 0.00 0.00 0.00 4.20
772 836 5.127356 ACTCGGACTAAATAAGAACAGAGGG 59.873 44.000 0.00 0.00 34.64 4.30
773 837 6.210287 ACTCGGACTAAATAAGAACAGAGG 57.790 41.667 0.00 0.00 34.64 3.69
776 840 9.182933 GCTAATACTCGGACTAAATAAGAACAG 57.817 37.037 0.00 0.00 0.00 3.16
777 841 8.910944 AGCTAATACTCGGACTAAATAAGAACA 58.089 33.333 0.00 0.00 0.00 3.18
778 842 9.396938 GAGCTAATACTCGGACTAAATAAGAAC 57.603 37.037 0.00 0.00 0.00 3.01
779 843 9.352191 AGAGCTAATACTCGGACTAAATAAGAA 57.648 33.333 0.00 0.00 41.77 2.52
780 844 8.921353 AGAGCTAATACTCGGACTAAATAAGA 57.079 34.615 0.00 0.00 41.77 2.10
781 845 8.784994 TGAGAGCTAATACTCGGACTAAATAAG 58.215 37.037 0.00 0.00 41.77 1.73
782 846 8.687292 TGAGAGCTAATACTCGGACTAAATAA 57.313 34.615 0.00 0.00 41.77 1.40
783 847 8.865420 ATGAGAGCTAATACTCGGACTAAATA 57.135 34.615 0.00 0.00 41.77 1.40
784 848 7.448777 TGATGAGAGCTAATACTCGGACTAAAT 59.551 37.037 0.00 0.00 41.77 1.40
785 849 6.771267 TGATGAGAGCTAATACTCGGACTAAA 59.229 38.462 0.00 0.00 41.77 1.85
786 850 6.296803 TGATGAGAGCTAATACTCGGACTAA 58.703 40.000 0.00 0.00 41.77 2.24
787 851 5.866207 TGATGAGAGCTAATACTCGGACTA 58.134 41.667 0.00 0.00 41.77 2.59
788 852 4.720046 TGATGAGAGCTAATACTCGGACT 58.280 43.478 0.00 0.00 41.77 3.85
789 853 5.440234 TTGATGAGAGCTAATACTCGGAC 57.560 43.478 0.00 0.00 41.77 4.79
790 854 5.594725 ACTTTGATGAGAGCTAATACTCGGA 59.405 40.000 0.00 0.00 41.77 4.55
791 855 5.837437 ACTTTGATGAGAGCTAATACTCGG 58.163 41.667 0.00 0.00 41.77 4.63
792 856 6.499172 TGACTTTGATGAGAGCTAATACTCG 58.501 40.000 0.00 0.00 41.77 4.18
793 857 7.042791 GCTTGACTTTGATGAGAGCTAATACTC 60.043 40.741 0.00 0.00 36.91 2.59
794 858 6.760770 GCTTGACTTTGATGAGAGCTAATACT 59.239 38.462 0.00 0.00 0.00 2.12
795 859 6.760770 AGCTTGACTTTGATGAGAGCTAATAC 59.239 38.462 0.00 0.00 37.24 1.89
796 860 6.882656 AGCTTGACTTTGATGAGAGCTAATA 58.117 36.000 0.00 0.00 37.24 0.98
797 861 5.743117 AGCTTGACTTTGATGAGAGCTAAT 58.257 37.500 0.00 0.00 37.24 1.73
798 862 5.157940 AGCTTGACTTTGATGAGAGCTAA 57.842 39.130 0.00 0.00 37.24 3.09
799 863 4.815533 AGCTTGACTTTGATGAGAGCTA 57.184 40.909 0.00 0.00 37.24 3.32
800 864 3.699411 AGCTTGACTTTGATGAGAGCT 57.301 42.857 0.00 0.00 34.43 4.09
801 865 4.762956 AAAGCTTGACTTTGATGAGAGC 57.237 40.909 0.00 0.00 47.00 4.09
811 875 8.250332 TCTTTTCATGTTTACAAAGCTTGACTT 58.750 29.630 0.00 0.00 41.70 3.01
812 876 7.771183 TCTTTTCATGTTTACAAAGCTTGACT 58.229 30.769 0.00 0.00 0.00 3.41
813 877 7.168135 CCTCTTTTCATGTTTACAAAGCTTGAC 59.832 37.037 0.00 0.00 0.00 3.18
814 878 7.068103 TCCTCTTTTCATGTTTACAAAGCTTGA 59.932 33.333 0.00 0.00 0.00 3.02
815 879 7.202526 TCCTCTTTTCATGTTTACAAAGCTTG 58.797 34.615 0.00 0.00 0.00 4.01
816 880 7.346751 TCCTCTTTTCATGTTTACAAAGCTT 57.653 32.000 0.00 0.00 0.00 3.74
817 881 6.015940 CCTCCTCTTTTCATGTTTACAAAGCT 60.016 38.462 0.00 0.00 0.00 3.74
818 882 6.016276 TCCTCCTCTTTTCATGTTTACAAAGC 60.016 38.462 0.00 0.00 0.00 3.51
819 883 7.510549 TCCTCCTCTTTTCATGTTTACAAAG 57.489 36.000 0.00 0.00 0.00 2.77
820 884 7.039784 CCATCCTCCTCTTTTCATGTTTACAAA 60.040 37.037 0.00 0.00 0.00 2.83
821 885 6.434028 CCATCCTCCTCTTTTCATGTTTACAA 59.566 38.462 0.00 0.00 0.00 2.41
822 886 5.945784 CCATCCTCCTCTTTTCATGTTTACA 59.054 40.000 0.00 0.00 0.00 2.41
823 887 5.946377 ACCATCCTCCTCTTTTCATGTTTAC 59.054 40.000 0.00 0.00 0.00 2.01
824 888 6.012508 AGACCATCCTCCTCTTTTCATGTTTA 60.013 38.462 0.00 0.00 0.00 2.01
825 889 5.003096 ACCATCCTCCTCTTTTCATGTTT 57.997 39.130 0.00 0.00 0.00 2.83
826 890 4.290722 AGACCATCCTCCTCTTTTCATGTT 59.709 41.667 0.00 0.00 0.00 2.71
827 891 3.848975 AGACCATCCTCCTCTTTTCATGT 59.151 43.478 0.00 0.00 0.00 3.21
947 1011 1.994399 TCCCCCACCAATGAACCTAT 58.006 50.000 0.00 0.00 0.00 2.57
984 1048 2.300723 AGCCATCAACACATTTGCACAT 59.699 40.909 0.00 0.00 0.00 3.21
991 1055 2.522185 AGCTTCAGCCATCAACACATT 58.478 42.857 0.00 0.00 43.38 2.71
1100 1164 3.242969 CGATCGTCCTCCTTCGTTTATGA 60.243 47.826 7.03 0.00 0.00 2.15
1104 1168 0.886563 ACGATCGTCCTCCTTCGTTT 59.113 50.000 16.60 0.00 41.65 3.60
1157 1222 4.425577 AAGAAAATCGCAAGCTAAGTGG 57.574 40.909 0.00 0.00 37.18 4.00
1218 1283 6.674694 CTAACTTAGCAGTTCATGAGCAAT 57.325 37.500 12.41 0.00 42.66 3.56
1521 2604 5.140747 ACATGTTAGGTCTGACTGAAGTC 57.859 43.478 7.85 3.41 44.97 3.01
1523 2606 5.394663 CCCTACATGTTAGGTCTGACTGAAG 60.395 48.000 2.30 0.00 32.88 3.02
1526 2609 3.769844 ACCCTACATGTTAGGTCTGACTG 59.230 47.826 2.30 0.00 32.88 3.51
1527 2610 4.062490 ACCCTACATGTTAGGTCTGACT 57.938 45.455 2.30 0.00 32.88 3.41
1528 2611 5.927281 TTACCCTACATGTTAGGTCTGAC 57.073 43.478 19.58 0.00 33.70 3.51
1530 2613 9.675464 TTTTTATTACCCTACATGTTAGGTCTG 57.325 33.333 19.58 8.07 33.70 3.51
1531 2614 9.676861 GTTTTTATTACCCTACATGTTAGGTCT 57.323 33.333 19.58 12.54 33.70 3.85
1532 2615 8.606602 CGTTTTTATTACCCTACATGTTAGGTC 58.393 37.037 19.58 5.67 33.70 3.85
1533 2616 7.553760 CCGTTTTTATTACCCTACATGTTAGGT 59.446 37.037 19.82 19.82 36.36 3.08
1534 2617 7.769970 TCCGTTTTTATTACCCTACATGTTAGG 59.230 37.037 2.30 8.06 34.52 2.69
1535 2618 8.721019 TCCGTTTTTATTACCCTACATGTTAG 57.279 34.615 2.30 0.00 0.00 2.34
1536 2619 8.538701 TCTCCGTTTTTATTACCCTACATGTTA 58.461 33.333 2.30 0.00 0.00 2.41
1537 2620 7.396418 TCTCCGTTTTTATTACCCTACATGTT 58.604 34.615 2.30 0.00 0.00 2.71
1539 2622 7.270047 TCTCTCCGTTTTTATTACCCTACATG 58.730 38.462 0.00 0.00 0.00 3.21
1553 2763 9.939802 ATTGTTTTATACTACTCTCTCCGTTTT 57.060 29.630 0.00 0.00 0.00 2.43
1554 2764 9.367444 CATTGTTTTATACTACTCTCTCCGTTT 57.633 33.333 0.00 0.00 0.00 3.60
1555 2765 7.980099 CCATTGTTTTATACTACTCTCTCCGTT 59.020 37.037 0.00 0.00 0.00 4.44
1556 2766 7.417570 CCCATTGTTTTATACTACTCTCTCCGT 60.418 40.741 0.00 0.00 0.00 4.69
1557 2767 6.924060 CCCATTGTTTTATACTACTCTCTCCG 59.076 42.308 0.00 0.00 0.00 4.63
1558 2768 6.706716 GCCCATTGTTTTATACTACTCTCTCC 59.293 42.308 0.00 0.00 0.00 3.71
1559 2769 7.501844 AGCCCATTGTTTTATACTACTCTCTC 58.498 38.462 0.00 0.00 0.00 3.20
1560 2770 7.345914 AGAGCCCATTGTTTTATACTACTCTCT 59.654 37.037 0.00 0.00 0.00 3.10
1561 2771 7.501844 AGAGCCCATTGTTTTATACTACTCTC 58.498 38.462 0.00 0.00 0.00 3.20
1631 4269 2.789917 GCTTCTGGCTGACGCATG 59.210 61.111 16.18 0.00 39.42 4.06
1720 4358 2.362632 ACTTCCGTCCCTCTCCGG 60.363 66.667 0.00 0.00 45.55 5.14
1819 4517 2.190578 CACCTTCCTCCCGGCATC 59.809 66.667 0.00 0.00 0.00 3.91
1820 4518 2.610859 ACACCTTCCTCCCGGCAT 60.611 61.111 0.00 0.00 0.00 4.40
1821 4519 3.319198 GACACCTTCCTCCCGGCA 61.319 66.667 0.00 0.00 0.00 5.69
1878 4576 2.056223 GGTAGAGGCCCACGTGCTA 61.056 63.158 10.91 2.68 0.00 3.49
1930 4628 2.284150 TCGGCGTACGTGTACAGTATAC 59.716 50.000 17.90 0.00 44.69 1.47
1936 4634 1.081509 GGTTCGGCGTACGTGTACA 60.082 57.895 17.90 0.00 44.69 2.90
1971 4671 5.179555 CGTTTCCCTACCGTATAGTAGTACC 59.820 48.000 0.00 0.00 38.46 3.34
1975 4675 4.576463 ACACGTTTCCCTACCGTATAGTAG 59.424 45.833 0.00 0.00 39.60 2.57
1976 4676 4.335315 CACACGTTTCCCTACCGTATAGTA 59.665 45.833 0.00 0.00 32.81 1.82
1980 4680 1.205417 CCACACGTTTCCCTACCGTAT 59.795 52.381 0.00 0.00 32.81 3.06
2025 4782 2.338500 CTTAACCAGACTTCCAGACGC 58.662 52.381 0.00 0.00 0.00 5.19
2109 4871 1.035385 CCCCCGGATACAGGCAAAAC 61.035 60.000 0.73 0.00 30.29 2.43
2110 4872 1.304952 CCCCCGGATACAGGCAAAA 59.695 57.895 0.73 0.00 30.29 2.44
2111 4873 0.620990 TACCCCCGGATACAGGCAAA 60.621 55.000 0.73 0.00 30.29 3.68
2166 4928 2.479198 GCGCAAGTAGGAAACGCC 59.521 61.111 0.30 0.00 43.58 5.68
2189 4951 2.747855 GACCCAAGGAGGCAAGCG 60.748 66.667 0.00 0.00 35.39 4.68
2213 4975 3.254166 AGCTAAACTTCGTCGTTACCAGA 59.746 43.478 0.00 0.00 0.00 3.86
2214 4976 3.572584 AGCTAAACTTCGTCGTTACCAG 58.427 45.455 0.00 0.00 0.00 4.00
2215 4977 3.648339 AGCTAAACTTCGTCGTTACCA 57.352 42.857 0.00 0.00 0.00 3.25
2216 4978 4.558835 GAAGCTAAACTTCGTCGTTACC 57.441 45.455 0.00 0.00 45.16 2.85
2226 4988 5.124457 TCGTCCGTGTATAGAAGCTAAACTT 59.876 40.000 0.00 0.00 42.98 2.66
2227 4989 4.637534 TCGTCCGTGTATAGAAGCTAAACT 59.362 41.667 0.00 0.00 0.00 2.66
2229 4991 5.066893 ACATCGTCCGTGTATAGAAGCTAAA 59.933 40.000 0.00 0.00 0.00 1.85
2230 4992 4.577693 ACATCGTCCGTGTATAGAAGCTAA 59.422 41.667 0.00 0.00 0.00 3.09
2231 4993 4.024302 CACATCGTCCGTGTATAGAAGCTA 60.024 45.833 0.00 0.00 0.00 3.32
2232 4994 2.950309 ACATCGTCCGTGTATAGAAGCT 59.050 45.455 0.00 0.00 0.00 3.74
2239 5001 0.800683 CGTGCACATCGTCCGTGTAT 60.801 55.000 18.64 0.00 36.71 2.29
2302 5065 1.593296 GAAGGGAAGCTGCCTGCAAG 61.593 60.000 11.64 0.00 37.13 4.01
2312 5075 1.373570 CATTGTCCTCGAAGGGAAGC 58.626 55.000 0.00 0.00 37.10 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.