AutoCloner

Multiple sequence alignment - TraesCS5A01G208700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G208700	chr5A	100.000	2603	0	0	1	2603	422037107	422039709	0.000000e+00	4807.0
1	TraesCS5A01G208700	chr5D	95.936	935	35	2	1170	2104	324408479	324409410	0.000000e+00	1513.0
2	TraesCS5A01G208700	chr5D	97.633	507	10	1	2097	2603	324410471	324410975	0.000000e+00	869.0
3	TraesCS5A01G208700	chr5D	93.852	244	14	1	939	1182	324408194	324408436	1.470000e-97	366.0
4	TraesCS5A01G208700	chr6A	95.365	863	33	7	1	859	608313360	608314219	0.000000e+00	1365.0
5	TraesCS5A01G208700	chr6A	86.885	122	16	0	53	174	107795693	107795814	1.260000e-28	137.0
6	TraesCS5A01G208700	chr7A	95.023	864	38	5	1	861	684934960	684935821	0.000000e+00	1352.0
7	TraesCS5A01G208700	chr7A	94.118	867	38	7	1	864	246273090	246272234	0.000000e+00	1306.0
8	TraesCS5A01G208700	chr7A	84.505	626	72	10	9	615	74944127	74943508	1.720000e-166	595.0
9	TraesCS5A01G208700	chr7A	88.732	142	12	4	724	861	43453449	43453590	1.240000e-38	171.0
10	TraesCS5A01G208700	chr7A	95.455	88	3	1	860	947	200723022	200722936	3.490000e-29	139.0
11	TraesCS5A01G208700	chr5B	91.588	844	63	3	1170	2006	375941126	375941968	0.000000e+00	1158.0
12	TraesCS5A01G208700	chr5B	95.560	563	24	1	2005	2567	375942130	375942691	0.000000e+00	900.0
13	TraesCS5A01G208700	chr5B	96.667	240	7	1	939	1178	375940841	375941079	5.220000e-107	398.0
14	TraesCS5A01G208700	chr2D	95.739	399	14	1	1	399	579139992	579140387	7.850000e-180	640.0
15	TraesCS5A01G208700	chr7B	92.857	308	20	2	305	611	261028979	261029285	1.840000e-121	446.0
16	TraesCS5A01G208700	chr7B	95.378	238	11	0	1	238	261028743	261028980	1.890000e-101	379.0
17	TraesCS5A01G208700	chr7B	87.500	136	12	5	724	856	472934296	472934429	4.490000e-33	152.0
18	TraesCS5A01G208700	chr7B	95.349	86	4	0	859	944	651498070	651497985	1.260000e-28	137.0
19	TraesCS5A01G208700	chr7B	94.186	86	5	0	859	944	472934348	472934433	5.850000e-27	132.0
20	TraesCS5A01G208700	chr3A	90.647	139	11	2	723	859	345563205	345563067	1.590000e-42	183.0
21	TraesCS5A01G208700	chr1B	90.071	141	10	3	723	859	651903358	651903498	2.060000e-41	180.0
22	TraesCS5A01G208700	chr2B	93.860	114	7	0	831	944	4547962	4547849	3.440000e-39	172.0
23	TraesCS5A01G208700	chr2B	95.349	86	4	0	859	944	794935580	794935665	1.260000e-28	137.0
24	TraesCS5A01G208700	chr2B	95.349	86	3	1	859	944	799981963	799982047	4.520000e-28	135.0
25	TraesCS5A01G208700	chr4A	86.765	136	15	3	726	859	216808227	216808093	5.800000e-32	148.0
26	TraesCS5A01G208700	chr4A	94.382	89	5	0	856	944	740373459	740373547	1.260000e-28	137.0
27	TraesCS5A01G208700	chr4A	93.258	89	6	0	859	947	739615955	739615867	5.850000e-27	132.0
28	TraesCS5A01G208700	chr3B	95.349	86	4	0	859	944	797633392	797633477	1.260000e-28	137.0
29	TraesCS5A01G208700	chr4B	90.385	104	6	4	759	859	31687013	31686911	1.630000e-27	134.0
30	TraesCS5A01G208700	chr6D	95.385	65	3	0	662	726	468908840	468908904	1.270000e-18	104.0
31	TraesCS5A01G208700	chr3D	92.308	65	5	0	662	726	573603232	573603296	2.760000e-15	93.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G208700	chr5A	422037107	422039709	2602	False	4807.000000	4807	100.0000	1	2603	1	chr5A.!!$F1	2602
1	TraesCS5A01G208700	chr5D	324408194	324410975	2781	False	916.000000	1513	95.8070	939	2603	3	chr5D.!!$F1	1664
2	TraesCS5A01G208700	chr6A	608313360	608314219	859	False	1365.000000	1365	95.3650	1	859	1	chr6A.!!$F2	858
3	TraesCS5A01G208700	chr7A	684934960	684935821	861	False	1352.000000	1352	95.0230	1	861	1	chr7A.!!$F2	860
4	TraesCS5A01G208700	chr7A	246272234	246273090	856	True	1306.000000	1306	94.1180	1	864	1	chr7A.!!$R3	863
5	TraesCS5A01G208700	chr7A	74943508	74944127	619	True	595.000000	595	84.5050	9	615	1	chr7A.!!$R1	606
6	TraesCS5A01G208700	chr5B	375940841	375942691	1850	False	818.666667	1158	94.6050	939	2567	3	chr5B.!!$F1	1628
7	TraesCS5A01G208700	chr7B	261028743	261029285	542	False	412.500000	446	94.1175	1	611	2	chr7B.!!$F1	610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
842	931	0.037232	GCGGAGACTACCAACTGCTT	60.037	55.0	0.0	0.0	0.0	3.91	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2282	3661	0.038343	TGCTGGAAAAGGCATTTCGC	60.038	50.0	8.88	8.26	46.93	4.7	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
206	222	0.463116	GTGTCGACCCACAACCACTT	60.463	55.000	14.12	0.00	35.38	3.16
253	334	2.430610	GCGATGGAGGCCTCTGAGT	61.431	63.158	31.36	15.12	0.00	3.41
723	809	2.727916	GCGAACACCTGGCTAATTTTCG	60.728	50.000	0.00	0.90	37.89	3.46
735	821	5.008415	TGGCTAATTTTCGTAAAACCAACGA	59.992	36.000	0.00	0.00	46.82	3.85
757	843	1.190178	AGGAGTTGGTGGACGGTACC	61.190	60.000	0.16	0.16	38.71	3.34
763	850	2.660670	TGGTGGACGGTACCAAAAAT	57.339	45.000	13.54	0.00	44.79	1.82
765	852	4.096190	TGGTGGACGGTACCAAAAATAA	57.904	40.909	13.54	0.00	44.79	1.40
766	853	4.664392	TGGTGGACGGTACCAAAAATAAT	58.336	39.130	13.54	0.00	44.79	1.28
767	854	4.701171	TGGTGGACGGTACCAAAAATAATC	59.299	41.667	13.54	0.00	44.79	1.75
768	855	4.945543	GGTGGACGGTACCAAAAATAATCT	59.054	41.667	13.54	0.00	41.87	2.40
769	856	6.114767	GGTGGACGGTACCAAAAATAATCTA	58.885	40.000	13.54	0.00	41.87	1.98
770	857	6.769341	GGTGGACGGTACCAAAAATAATCTAT	59.231	38.462	13.54	0.00	41.87	1.98
807	896	3.569250	AAAACCGGACGAAAATGATGG	57.431	42.857	9.46	0.00	0.00	3.51
808	897	1.459450	AACCGGACGAAAATGATGGG	58.541	50.000	9.46	0.00	0.00	4.00
809	898	0.616371	ACCGGACGAAAATGATGGGA	59.384	50.000	9.46	0.00	0.00	4.37
810	899	1.014352	CCGGACGAAAATGATGGGAC	58.986	55.000	0.00	0.00	0.00	4.46
811	900	0.650512	CGGACGAAAATGATGGGACG	59.349	55.000	0.00	0.00	0.00	4.79
812	901	1.737696	CGGACGAAAATGATGGGACGA	60.738	52.381	0.00	0.00	0.00	4.20
813	902	2.352388	GGACGAAAATGATGGGACGAA	58.648	47.619	0.00	0.00	0.00	3.85
814	903	2.745281	GGACGAAAATGATGGGACGAAA	59.255	45.455	0.00	0.00	0.00	3.46
815	904	3.189702	GGACGAAAATGATGGGACGAAAA	59.810	43.478	0.00	0.00	0.00	2.29
816	905	4.142469	GGACGAAAATGATGGGACGAAAAT	60.142	41.667	0.00	0.00	0.00	1.82
817	906	5.385509	ACGAAAATGATGGGACGAAAATT	57.614	34.783	0.00	0.00	0.00	1.82
818	907	5.160641	ACGAAAATGATGGGACGAAAATTG	58.839	37.500	0.00	0.00	0.00	2.32
819	908	5.048364	ACGAAAATGATGGGACGAAAATTGA	60.048	36.000	0.00	0.00	0.00	2.57
820	909	5.286082	CGAAAATGATGGGACGAAAATTGAC	59.714	40.000	0.00	0.00	0.00	3.18
821	910	4.718940	AATGATGGGACGAAAATTGACC	57.281	40.909	0.00	0.00	0.00	4.02
822	911	3.147553	TGATGGGACGAAAATTGACCA	57.852	42.857	0.00	0.00	0.00	4.02
823	912	3.081061	TGATGGGACGAAAATTGACCAG	58.919	45.455	0.00	0.00	0.00	4.00
824	913	1.243902	TGGGACGAAAATTGACCAGC	58.756	50.000	0.00	0.00	0.00	4.85
825	914	0.168128	GGGACGAAAATTGACCAGCG	59.832	55.000	0.00	0.00	0.00	5.18
826	915	0.168128	GGACGAAAATTGACCAGCGG	59.832	55.000	0.00	0.00	0.00	5.52
827	916	1.153353	GACGAAAATTGACCAGCGGA	58.847	50.000	1.50	0.00	0.00	5.54
828	917	1.128692	GACGAAAATTGACCAGCGGAG	59.871	52.381	1.50	0.00	0.00	4.63
829	918	1.270625	ACGAAAATTGACCAGCGGAGA	60.271	47.619	1.50	0.00	0.00	3.71
830	919	1.128692	CGAAAATTGACCAGCGGAGAC	59.871	52.381	1.50	0.00	0.00	3.36
831	920	2.427506	GAAAATTGACCAGCGGAGACT	58.572	47.619	1.50	0.00	0.00	3.24
832	921	3.596214	GAAAATTGACCAGCGGAGACTA	58.404	45.455	1.50	0.00	0.00	2.59
833	922	2.674796	AATTGACCAGCGGAGACTAC	57.325	50.000	1.50	0.00	0.00	2.73
834	923	0.824759	ATTGACCAGCGGAGACTACC	59.175	55.000	1.50	0.00	0.00	3.18
835	924	0.541063	TTGACCAGCGGAGACTACCA	60.541	55.000	1.50	0.00	0.00	3.25
836	925	0.541063	TGACCAGCGGAGACTACCAA	60.541	55.000	1.50	0.00	0.00	3.67
837	926	0.108756	GACCAGCGGAGACTACCAAC	60.109	60.000	1.50	0.00	0.00	3.77
838	927	0.542232	ACCAGCGGAGACTACCAACT	60.542	55.000	1.50	0.00	0.00	3.16
839	928	0.108615	CCAGCGGAGACTACCAACTG	60.109	60.000	0.00	0.00	35.12	3.16
840	929	0.737715	CAGCGGAGACTACCAACTGC	60.738	60.000	0.00	0.00	35.23	4.40
841	930	0.900647	AGCGGAGACTACCAACTGCT	60.901	55.000	0.00	0.00	39.67	4.24
842	931	0.037232	GCGGAGACTACCAACTGCTT	60.037	55.000	0.00	0.00	0.00	3.91
843	932	1.997669	CGGAGACTACCAACTGCTTC	58.002	55.000	0.00	0.00	0.00	3.86
844	933	1.272490	CGGAGACTACCAACTGCTTCA	59.728	52.381	0.00	0.00	0.00	3.02
845	934	2.093973	CGGAGACTACCAACTGCTTCAT	60.094	50.000	0.00	0.00	0.00	2.57
846	935	3.617531	CGGAGACTACCAACTGCTTCATT	60.618	47.826	0.00	0.00	0.00	2.57
847	936	4.381612	CGGAGACTACCAACTGCTTCATTA	60.382	45.833	0.00	0.00	0.00	1.90
848	937	5.112686	GGAGACTACCAACTGCTTCATTAG	58.887	45.833	0.00	0.00	0.00	1.73
849	938	5.091261	AGACTACCAACTGCTTCATTAGG	57.909	43.478	0.00	0.00	0.00	2.69
850	939	4.777896	AGACTACCAACTGCTTCATTAGGA	59.222	41.667	0.00	0.00	0.00	2.94
851	940	5.091261	ACTACCAACTGCTTCATTAGGAG	57.909	43.478	0.00	0.00	46.91	3.69
862	951	7.291411	TGCTTCATTAGGAGTAGAGATAACC	57.709	40.000	0.00	0.00	0.00	2.85
863	952	7.069986	TGCTTCATTAGGAGTAGAGATAACCT	58.930	38.462	0.00	0.00	35.11	3.50
864	953	8.225416	TGCTTCATTAGGAGTAGAGATAACCTA	58.775	37.037	0.00	0.00	32.90	3.08
865	954	9.250246	GCTTCATTAGGAGTAGAGATAACCTAT	57.750	37.037	0.00	0.00	33.98	2.57
927	1016	1.178276	CGGAGACTACCAACTGCTCT	58.822	55.000	0.00	0.00	0.00	4.09
954	1043	3.438668	GGAGTAGAGATTCTCCCCCATCA	60.439	52.174	10.09	0.00	42.96	3.07
993	1082	1.941377	TCGTAACCCTAGAGCCCAAA	58.059	50.000	0.00	0.00	0.00	3.28
1215	1358	5.301835	ACATCTCGAATTTCTCCATCCAT	57.698	39.130	0.00	0.00	0.00	3.41
1226	1369	1.486310	CTCCATCCATTCCCTCGACAA	59.514	52.381	0.00	0.00	0.00	3.18
1301	1444	2.501610	GTCCATCGACCTCCAGGC	59.498	66.667	0.00	0.00	39.32	4.85
1357	1506	2.126307	CGAGTCTCGTGTGCCTGG	60.126	66.667	14.27	0.00	34.72	4.45
1436	1585	1.884579	CAAGCAGCTCAAACTCATGGT	59.115	47.619	0.00	0.00	0.00	3.55
1545	1694	3.932580	TACACGCAGCGAGGCCTTG	62.933	63.158	24.65	16.53	0.00	3.61
1750	1899	6.611642	TCACTCTAAATAAGTGCTACCCATCT	59.388	38.462	0.00	0.00	43.09	2.90
1816	1965	7.701078	TGCTGTCACTCGAAATAGATAACTAAC	59.299	37.037	0.00	0.00	32.04	2.34
1951	2101	4.498682	GGATGAATCTGGCTTATGTGCAAC	60.499	45.833	0.00	0.00	37.35	4.17
1953	2103	4.842574	TGAATCTGGCTTATGTGCAACTA	58.157	39.130	0.00	0.00	38.04	2.24
1981	2131	9.147732	GTTCCCCTTCCTATTCATTTATTCAAT	57.852	33.333	0.00	0.00	0.00	2.57
2282	3661	7.806149	TCAGAACATACTGTAACGTTATGTG	57.194	36.000	11.86	6.92	38.79	3.21
2530	3909	4.464069	AACAGAGATACTCAGTGCTTCC	57.536	45.455	0.00	0.00	30.85	3.46
2534	3913	5.046014	ACAGAGATACTCAGTGCTTCCAATT	60.046	40.000	0.00	0.00	29.30	2.32

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
206	222	1.227943	GCTGAACCACAGGTCAGCA	60.228	57.895	24.30	6.15	46.15	4.41
364	447	4.585526	GCATCGCGGATCCGACCA	62.586	66.667	37.64	19.63	40.40	4.02
611	697	0.548682	ACCTTCCTGCCAGGATCTGT	60.549	55.000	15.62	9.27	45.34	3.41
615	701	2.311854	CCCACCTTCCTGCCAGGAT	61.312	63.158	15.62	0.00	45.34	3.24
708	794	4.828387	TGGTTTTACGAAAATTAGCCAGGT	59.172	37.500	0.00	0.00	32.22	4.00
723	809	5.091910	CAACTCCTCTTCGTTGGTTTTAC	57.908	43.478	0.00	0.00	37.45	2.01
735	821	0.763223	ACCGTCCACCAACTCCTCTT	60.763	55.000	0.00	0.00	0.00	2.85
738	824	1.190178	GGTACCGTCCACCAACTCCT	61.190	60.000	0.00	0.00	36.01	3.69
796	885	5.286082	GTCAATTTTCGTCCCATCATTTTCG	59.714	40.000	0.00	0.00	0.00	3.46
802	891	3.081061	CTGGTCAATTTTCGTCCCATCA	58.919	45.455	0.00	0.00	0.00	3.07
803	892	2.159379	GCTGGTCAATTTTCGTCCCATC	60.159	50.000	0.00	0.00	0.00	3.51
804	893	1.818674	GCTGGTCAATTTTCGTCCCAT	59.181	47.619	0.00	0.00	0.00	4.00
805	894	1.243902	GCTGGTCAATTTTCGTCCCA	58.756	50.000	0.00	0.00	0.00	4.37
806	895	0.168128	CGCTGGTCAATTTTCGTCCC	59.832	55.000	0.00	0.00	0.00	4.46
807	896	0.168128	CCGCTGGTCAATTTTCGTCC	59.832	55.000	0.00	0.00	0.00	4.79
808	897	1.128692	CTCCGCTGGTCAATTTTCGTC	59.871	52.381	0.00	0.00	0.00	4.20
809	898	1.156736	CTCCGCTGGTCAATTTTCGT	58.843	50.000	0.00	0.00	0.00	3.85
810	899	1.128692	GTCTCCGCTGGTCAATTTTCG	59.871	52.381	0.00	0.00	0.00	3.46
811	900	2.427506	AGTCTCCGCTGGTCAATTTTC	58.572	47.619	0.00	0.00	0.00	2.29
812	901	2.568623	AGTCTCCGCTGGTCAATTTT	57.431	45.000	0.00	0.00	0.00	1.82
813	902	2.354805	GGTAGTCTCCGCTGGTCAATTT	60.355	50.000	0.00	0.00	0.00	1.82
814	903	1.207329	GGTAGTCTCCGCTGGTCAATT	59.793	52.381	0.00	0.00	0.00	2.32
815	904	0.824759	GGTAGTCTCCGCTGGTCAAT	59.175	55.000	0.00	0.00	0.00	2.57
816	905	0.541063	TGGTAGTCTCCGCTGGTCAA	60.541	55.000	0.00	0.00	0.00	3.18
817	906	0.541063	TTGGTAGTCTCCGCTGGTCA	60.541	55.000	0.00	0.00	0.00	4.02
818	907	0.108756	GTTGGTAGTCTCCGCTGGTC	60.109	60.000	0.00	0.00	0.00	4.02
819	908	0.542232	AGTTGGTAGTCTCCGCTGGT	60.542	55.000	0.00	0.00	0.00	4.00
820	909	0.108615	CAGTTGGTAGTCTCCGCTGG	60.109	60.000	0.00	0.00	33.08	4.85
821	910	0.737715	GCAGTTGGTAGTCTCCGCTG	60.738	60.000	0.00	0.00	36.72	5.18
822	911	0.900647	AGCAGTTGGTAGTCTCCGCT	60.901	55.000	0.00	0.00	0.00	5.52
823	912	0.037232	AAGCAGTTGGTAGTCTCCGC	60.037	55.000	0.00	0.00	0.00	5.54
824	913	1.272490	TGAAGCAGTTGGTAGTCTCCG	59.728	52.381	0.00	0.00	0.00	4.63
825	914	3.618690	ATGAAGCAGTTGGTAGTCTCC	57.381	47.619	0.00	0.00	0.00	3.71
826	915	5.105310	TCCTAATGAAGCAGTTGGTAGTCTC	60.105	44.000	0.00	0.00	0.00	3.36
827	916	4.777896	TCCTAATGAAGCAGTTGGTAGTCT	59.222	41.667	0.00	0.00	0.00	3.24
828	917	5.086104	TCCTAATGAAGCAGTTGGTAGTC	57.914	43.478	0.00	0.00	0.00	2.59
829	918	4.532521	ACTCCTAATGAAGCAGTTGGTAGT	59.467	41.667	0.00	0.00	0.00	2.73
830	919	5.091261	ACTCCTAATGAAGCAGTTGGTAG	57.909	43.478	0.00	0.00	0.00	3.18
831	920	5.955959	TCTACTCCTAATGAAGCAGTTGGTA	59.044	40.000	0.00	0.00	0.00	3.25
832	921	4.777896	TCTACTCCTAATGAAGCAGTTGGT	59.222	41.667	0.00	0.00	0.00	3.67
833	922	5.127845	TCTCTACTCCTAATGAAGCAGTTGG	59.872	44.000	0.00	0.00	0.00	3.77
834	923	6.214191	TCTCTACTCCTAATGAAGCAGTTG	57.786	41.667	0.00	0.00	0.00	3.16
835	924	8.417884	GTTATCTCTACTCCTAATGAAGCAGTT	58.582	37.037	0.00	0.00	0.00	3.16
836	925	7.014808	GGTTATCTCTACTCCTAATGAAGCAGT	59.985	40.741	0.00	0.00	0.00	4.40
837	926	7.232534	AGGTTATCTCTACTCCTAATGAAGCAG	59.767	40.741	0.00	0.00	0.00	4.24
838	927	7.069986	AGGTTATCTCTACTCCTAATGAAGCA	58.930	38.462	0.00	0.00	0.00	3.91
839	928	7.533289	AGGTTATCTCTACTCCTAATGAAGC	57.467	40.000	0.00	0.00	0.00	3.86
870	959	3.317993	CCCATCACTTTCGTCTGGTTTTT	59.682	43.478	0.00	0.00	0.00	1.94
871	960	2.884639	CCCATCACTTTCGTCTGGTTTT	59.115	45.455	0.00	0.00	0.00	2.43
872	961	2.105821	TCCCATCACTTTCGTCTGGTTT	59.894	45.455	0.00	0.00	0.00	3.27
873	962	1.697432	TCCCATCACTTTCGTCTGGTT	59.303	47.619	0.00	0.00	0.00	3.67
874	963	1.002087	GTCCCATCACTTTCGTCTGGT	59.998	52.381	0.00	0.00	0.00	4.00
875	964	1.726853	GTCCCATCACTTTCGTCTGG	58.273	55.000	0.00	0.00	0.00	3.86
876	965	1.067846	TCGTCCCATCACTTTCGTCTG	60.068	52.381	0.00	0.00	0.00	3.51
877	966	1.254026	TCGTCCCATCACTTTCGTCT	58.746	50.000	0.00	0.00	0.00	4.18
878	967	2.074547	TTCGTCCCATCACTTTCGTC	57.925	50.000	0.00	0.00	0.00	4.20
927	1016	6.155247	GGGGGAGAATCTCTACTCCTAATA	57.845	45.833	10.38	0.00	45.06	0.98
954	1043	3.690460	GATTTCCCCTCACACTTCACAT	58.310	45.455	0.00	0.00	0.00	3.21
993	1082	2.045926	GAGGGCGCCATGTCAGTT	60.046	61.111	30.85	1.98	0.00	3.16
1215	1358	1.671742	GGAGTGCTTGTCGAGGGAA	59.328	57.895	0.00	0.00	0.00	3.97
1307	1450	2.494870	ACAGAAGAATGAATGGCCAAGC	59.505	45.455	10.96	5.18	0.00	4.01
1311	1460	4.268359	AGAAGACAGAAGAATGAATGGCC	58.732	43.478	0.00	0.00	0.00	5.36
1315	1464	7.201591	CGTGCATAAGAAGACAGAAGAATGAAT	60.202	37.037	0.00	0.00	0.00	2.57
1320	1469	5.134202	TCGTGCATAAGAAGACAGAAGAA	57.866	39.130	0.00	0.00	0.00	2.52
1373	1522	1.150992	ACGGGGAGAGGAGGTATCG	59.849	63.158	0.00	0.00	0.00	2.92
1436	1585	2.627945	CATTCGGAGGGAATTTGACGA	58.372	47.619	0.00	0.00	42.77	4.20
1816	1965	3.348119	TGCCTAGTATCTATCAGCTCGG	58.652	50.000	0.00	0.00	0.00	4.63
1951	2101	9.813826	AATAAATGAATAGGAAGGGGAACATAG	57.186	33.333	0.00	0.00	0.00	2.23
1953	2103	8.288812	TGAATAAATGAATAGGAAGGGGAACAT	58.711	33.333	0.00	0.00	0.00	2.71
2006	2319	9.429600	GGCATTTCGTACATAACATTAAAGTAC	57.570	33.333	0.00	0.00	33.53	2.73
2070	2383	9.667107	TTACATTTATTTTTGTGTGGACCAAAA	57.333	25.926	0.00	0.00	39.36	2.44
2282	3661	0.038343	TGCTGGAAAAGGCATTTCGC	60.038	50.000	8.88	8.26	46.93	4.70
2378	3757	1.937278	TCGCCACTTAACACGAACAA	58.063	45.000	0.00	0.00	0.00	2.83
2530	3909	8.844441	ATTGCAAGAACATTTTGAACAAATTG	57.156	26.923	4.94	15.73	37.55	2.32
2534	3913	9.985318	CTAAAATTGCAAGAACATTTTGAACAA	57.015	25.926	14.85	0.00	0.00	2.83

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.