Multiple sequence alignment - TraesCS5A01G208600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G208600 chr5A 100.000 5179 0 0 1 5179 422036126 422041304 0.000000e+00 9564.0
1 TraesCS5A01G208600 chr5A 84.971 173 18 6 4304 4476 355188145 355188309 8.920000e-38 169.0
2 TraesCS5A01G208600 chr5A 95.890 73 1 1 4229 4299 624782046 624782118 3.280000e-22 117.0
3 TraesCS5A01G208600 chr5A 97.101 69 1 1 4231 4299 447544569 447544502 1.180000e-21 115.0
4 TraesCS5A01G208600 chr6A 96.638 1844 55 7 1 1840 608312379 608314219 0.000000e+00 3055.0
5 TraesCS5A01G208600 chr6A 82.042 529 61 11 655 1155 107795292 107795814 2.230000e-113 420.0
6 TraesCS5A01G208600 chr6A 89.535 86 8 1 4520 4604 609314450 609314535 1.970000e-19 108.0
7 TraesCS5A01G208600 chr7A 95.942 1848 59 8 1 1845 246274068 246272234 0.000000e+00 2983.0
8 TraesCS5A01G208600 chr7A 96.431 1653 54 5 193 1842 684934171 684935821 0.000000e+00 2721.0
9 TraesCS5A01G208600 chr7A 84.604 656 76 10 960 1596 74944157 74943508 3.400000e-176 628.0
10 TraesCS5A01G208600 chr7A 94.608 204 8 3 1 202 684931531 684931733 3.890000e-81 313.0
11 TraesCS5A01G208600 chr7A 88.732 142 12 4 1705 1842 43453449 43453590 2.480000e-38 171.0
12 TraesCS5A01G208600 chr7A 95.455 88 3 1 1841 1928 200723022 200722936 6.990000e-29 139.0
13 TraesCS5A01G208600 chr2D 94.381 1406 50 7 1 1380 579138985 579140387 0.000000e+00 2132.0
14 TraesCS5A01G208600 chr2D 86.982 169 14 3 4306 4474 636546279 636546119 3.190000e-42 183.0
15 TraesCS5A01G208600 chr5D 96.899 1161 31 2 3078 4235 324410471 324411629 0.000000e+00 1940.0
16 TraesCS5A01G208600 chr5D 95.936 935 35 2 2151 3085 324408479 324409410 0.000000e+00 1513.0
17 TraesCS5A01G208600 chr5D 92.584 890 32 14 4293 5179 324411623 324412481 0.000000e+00 1247.0
18 TraesCS5A01G208600 chr5D 93.852 244 14 1 1920 2163 324408194 324408436 2.950000e-97 366.0
19 TraesCS5A01G208600 chr5D 85.215 372 38 7 655 1009 548195126 548194755 2.950000e-97 366.0
20 TraesCS5A01G208600 chr5D 85.830 247 26 5 433 676 329266555 329266795 2.390000e-63 254.0
21 TraesCS5A01G208600 chr5D 94.667 75 2 2 4233 4306 41140035 41139962 1.180000e-21 115.0
22 TraesCS5A01G208600 chr5D 97.015 67 2 0 4233 4299 39033246 39033180 4.240000e-21 113.0
23 TraesCS5A01G208600 chr5D 97.059 68 1 1 4232 4299 412311714 412311780 4.240000e-21 113.0
24 TraesCS5A01G208600 chr5B 93.286 1266 65 9 2986 4235 375942130 375943391 0.000000e+00 1849.0
25 TraesCS5A01G208600 chr5B 92.786 901 42 5 4293 5179 375943385 375944276 0.000000e+00 1282.0
26 TraesCS5A01G208600 chr5B 91.588 844 63 3 2151 2987 375941126 375941968 0.000000e+00 1158.0
27 TraesCS5A01G208600 chr5B 96.667 240 7 1 1920 2159 375940841 375941079 1.040000e-106 398.0
28 TraesCS5A01G208600 chr5B 85.933 327 33 8 4831 5148 33534049 33533727 2.310000e-88 337.0
29 TraesCS5A01G208600 chr5B 91.111 90 8 0 4516 4605 403781317 403781406 7.040000e-24 122.0
30 TraesCS5A01G208600 chr7B 92.846 1244 46 11 1 1219 261027755 261028980 0.000000e+00 1764.0
31 TraesCS5A01G208600 chr7B 92.857 308 20 2 1286 1592 261028979 261029285 3.680000e-121 446.0
32 TraesCS5A01G208600 chr7B 89.474 190 12 5 80 261 744955779 744955590 3.120000e-57 233.0
33 TraesCS5A01G208600 chr7B 87.500 136 12 5 1705 1837 472934296 472934429 8.980000e-33 152.0
34 TraesCS5A01G208600 chr7B 95.349 86 4 0 1840 1925 651498070 651497985 2.520000e-28 137.0
35 TraesCS5A01G208600 chr7B 94.186 86 5 0 1840 1925 472934348 472934433 1.170000e-26 132.0
36 TraesCS5A01G208600 chr7B 90.588 85 8 0 4520 4604 713284279 713284363 4.240000e-21 113.0
37 TraesCS5A01G208600 chr7B 88.764 89 10 0 4517 4605 597185957 597185869 5.480000e-20 110.0
38 TraesCS5A01G208600 chr7B 93.243 74 4 1 4232 4305 129930035 129929963 1.970000e-19 108.0
39 TraesCS5A01G208600 chr1B 83.650 526 58 12 655 1163 656250935 656250421 2.180000e-128 470.0
40 TraesCS5A01G208600 chr1B 95.055 182 9 0 80 261 6237636 6237817 2.360000e-73 287.0
41 TraesCS5A01G208600 chr1B 95.055 182 9 0 80 261 7483587 7483768 2.360000e-73 287.0
42 TraesCS5A01G208600 chr1B 90.071 141 10 3 1704 1840 651903358 651903498 4.120000e-41 180.0
43 TraesCS5A01G208600 chr1B 84.971 173 18 3 4304 4476 60129799 60129963 8.920000e-38 169.0
44 TraesCS5A01G208600 chr3A 82.510 526 55 14 658 1154 726698866 726698349 1.330000e-115 427.0
45 TraesCS5A01G208600 chr3A 81.481 540 60 15 655 1161 750636725 750636193 1.740000e-109 407.0
46 TraesCS5A01G208600 chr3A 90.647 139 11 2 1704 1840 345563205 345563067 3.190000e-42 183.0
47 TraesCS5A01G208600 chr3A 98.507 67 1 0 4232 4298 621834340 621834406 9.110000e-23 119.0
48 TraesCS5A01G208600 chr3D 84.416 231 27 6 599 829 164217820 164218041 8.730000e-53 219.0
49 TraesCS5A01G208600 chr3D 86.709 158 14 3 4306 4463 426160642 426160492 8.920000e-38 169.0
50 TraesCS5A01G208600 chr3D 92.308 65 5 0 1643 1707 573603232 573603296 5.520000e-15 93.5
51 TraesCS5A01G208600 chr4B 85.185 216 20 8 394 602 14766505 14766295 1.460000e-50 211.0
52 TraesCS5A01G208600 chr4B 87.013 154 14 4 447 596 655553818 655553969 8.920000e-38 169.0
53 TraesCS5A01G208600 chr4B 90.385 104 6 4 1740 1840 31687013 31686911 3.250000e-27 134.0
54 TraesCS5A01G208600 chr4B 88.764 89 10 0 4520 4608 22846481 22846393 5.480000e-20 110.0
55 TraesCS5A01G208600 chr3B 82.251 231 32 4 599 829 754384650 754384429 1.900000e-44 191.0
56 TraesCS5A01G208600 chr3B 95.349 86 4 0 1840 1925 797633392 797633477 2.520000e-28 137.0
57 TraesCS5A01G208600 chr3B 89.815 108 6 4 1737 1840 488534794 488534900 3.250000e-27 134.0
58 TraesCS5A01G208600 chr2B 93.860 114 7 0 1812 1925 4547962 4547849 6.890000e-39 172.0
59 TraesCS5A01G208600 chr2B 95.349 86 4 0 1840 1925 794935580 794935665 2.520000e-28 137.0
60 TraesCS5A01G208600 chr2B 95.349 86 3 1 1840 1925 799981963 799982047 9.050000e-28 135.0
61 TraesCS5A01G208600 chr6B 84.483 174 18 7 4304 4476 364904224 364904389 4.150000e-36 163.0
62 TraesCS5A01G208600 chr4D 87.586 145 13 3 455 596 253598087 253598229 4.150000e-36 163.0
63 TraesCS5A01G208600 chr6D 84.000 175 14 11 4307 4476 97713188 97713023 6.940000e-34 156.0
64 TraesCS5A01G208600 chr6D 83.708 178 15 10 4304 4476 410219160 410219328 6.940000e-34 156.0
65 TraesCS5A01G208600 chr6D 95.652 69 2 1 4231 4298 103006123 103006191 5.480000e-20 110.0
66 TraesCS5A01G208600 chr6D 95.385 65 3 0 1643 1707 468908840 468908904 2.550000e-18 104.0
67 TraesCS5A01G208600 chr4A 86.765 136 15 3 1707 1840 216808227 216808093 1.160000e-31 148.0
68 TraesCS5A01G208600 chr4A 94.382 89 5 0 1837 1925 740373459 740373547 2.520000e-28 137.0
69 TraesCS5A01G208600 chr4A 93.258 89 6 0 1840 1928 739615955 739615867 1.170000e-26 132.0
70 TraesCS5A01G208600 chr4A 89.535 86 7 1 4520 4605 546610336 546610253 1.970000e-19 108.0
71 TraesCS5A01G208600 chr7D 97.059 68 1 1 4231 4298 604972458 604972524 4.240000e-21 113.0
72 TraesCS5A01G208600 chr7D 89.412 85 9 0 4520 4604 618868750 618868834 1.970000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G208600 chr5A 422036126 422041304 5178 False 9564.00 9564 100.00000 1 5179 1 chr5A.!!$F2 5178
1 TraesCS5A01G208600 chr6A 608312379 608314219 1840 False 3055.00 3055 96.63800 1 1840 1 chr6A.!!$F2 1839
2 TraesCS5A01G208600 chr6A 107795292 107795814 522 False 420.00 420 82.04200 655 1155 1 chr6A.!!$F1 500
3 TraesCS5A01G208600 chr7A 246272234 246274068 1834 True 2983.00 2983 95.94200 1 1845 1 chr7A.!!$R3 1844
4 TraesCS5A01G208600 chr7A 684931531 684935821 4290 False 1517.00 2721 95.51950 1 1842 2 chr7A.!!$F2 1841
5 TraesCS5A01G208600 chr7A 74943508 74944157 649 True 628.00 628 84.60400 960 1596 1 chr7A.!!$R1 636
6 TraesCS5A01G208600 chr2D 579138985 579140387 1402 False 2132.00 2132 94.38100 1 1380 1 chr2D.!!$F1 1379
7 TraesCS5A01G208600 chr5D 324408194 324412481 4287 False 1266.50 1940 94.81775 1920 5179 4 chr5D.!!$F3 3259
8 TraesCS5A01G208600 chr5B 375940841 375944276 3435 False 1171.75 1849 93.58175 1920 5179 4 chr5B.!!$F2 3259
9 TraesCS5A01G208600 chr7B 261027755 261029285 1530 False 1105.00 1764 92.85150 1 1592 2 chr7B.!!$F2 1591
10 TraesCS5A01G208600 chr1B 656250421 656250935 514 True 470.00 470 83.65000 655 1163 1 chr1B.!!$R1 508
11 TraesCS5A01G208600 chr3A 726698349 726698866 517 True 427.00 427 82.51000 658 1154 1 chr3A.!!$R2 496
12 TraesCS5A01G208600 chr3A 750636193 750636725 532 True 407.00 407 81.48100 655 1161 1 chr3A.!!$R3 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 115 1.237285 GGATGGTCGTTGCAAGCTGT 61.237 55.000 0.00 0.0 0.00 4.40 F
1187 3739 0.463116 GTGTCGACCCACAACCACTT 60.463 55.000 14.12 0.0 35.38 3.16 F
1823 4448 0.037232 GCGGAGACTACCAACTGCTT 60.037 55.000 0.00 0.0 0.00 3.91 F
1908 4533 1.178276 CGGAGACTACCAACTGCTCT 58.822 55.000 0.00 0.0 0.00 4.09 F
2207 4886 1.486310 CTCCATCCATTCCCTCGACAA 59.514 52.381 0.00 0.0 0.00 3.18 F
2417 5102 1.884579 CAAGCAGCTCAAACTCATGGT 59.115 47.619 0.00 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 4429 0.037232 AAGCAGTTGGTAGTCTCCGC 60.037 55.000 0.00 0.00 0.00 5.54 R
2354 5039 1.150992 ACGGGGAGAGGAGGTATCG 59.849 63.158 0.00 0.00 0.00 2.92 R
3263 7178 0.038343 TGCTGGAAAAGGCATTTCGC 60.038 50.000 8.88 8.26 46.93 4.70 R
3359 7274 1.937278 TCGCCACTTAACACGAACAA 58.063 45.000 0.00 0.00 0.00 2.83 R
3953 7883 1.492599 TGAAGGTTGGGACACATGTCA 59.507 47.619 13.77 0.00 46.47 3.58 R
4293 8226 1.326328 CGGGGCCTTACTAGGTACTC 58.674 60.000 0.84 0.00 44.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.635663 CGTCGGATTCAAGGGTGCAC 61.636 60.000 8.80 8.80 0.00 4.57
70 115 1.237285 GGATGGTCGTTGCAAGCTGT 61.237 55.000 0.00 0.00 0.00 4.40
151 197 5.068723 GGCAGTTTCATTCATTCATCCATCT 59.931 40.000 0.00 0.00 0.00 2.90
343 2840 1.271856 TCATTAGGTCAACCTCGCCA 58.728 50.000 4.63 0.00 44.77 5.69
390 2887 1.896660 GCGCAACCTGGTCCTTTGA 60.897 57.895 0.30 0.00 0.00 2.69
417 2914 9.883142 TTGAAATTACAACTTTCTTCACCATTT 57.117 25.926 0.00 0.00 34.43 2.32
490 2987 8.763356 CATTATGCAAACTTCTTAGCACAAAAA 58.237 29.630 0.00 0.00 40.14 1.94
493 2990 7.928908 TGCAAACTTCTTAGCACAAAAATAG 57.071 32.000 0.00 0.00 31.05 1.73
1187 3739 0.463116 GTGTCGACCCACAACCACTT 60.463 55.000 14.12 0.00 35.38 3.16
1234 3851 2.430610 GCGATGGAGGCCTCTGAGT 61.431 63.158 31.36 15.12 0.00 3.41
1704 4326 2.727916 GCGAACACCTGGCTAATTTTCG 60.728 50.000 0.00 0.90 37.89 3.46
1716 4338 5.008415 TGGCTAATTTTCGTAAAACCAACGA 59.992 36.000 0.00 0.00 46.82 3.85
1738 4360 1.190178 AGGAGTTGGTGGACGGTACC 61.190 60.000 0.16 0.16 38.71 3.34
1744 4367 2.660670 TGGTGGACGGTACCAAAAAT 57.339 45.000 13.54 0.00 44.79 1.82
1746 4369 4.096190 TGGTGGACGGTACCAAAAATAA 57.904 40.909 13.54 0.00 44.79 1.40
1747 4370 4.664392 TGGTGGACGGTACCAAAAATAAT 58.336 39.130 13.54 0.00 44.79 1.28
1748 4371 4.701171 TGGTGGACGGTACCAAAAATAATC 59.299 41.667 13.54 0.00 44.79 1.75
1749 4372 4.945543 GGTGGACGGTACCAAAAATAATCT 59.054 41.667 13.54 0.00 41.87 2.40
1750 4373 6.114767 GGTGGACGGTACCAAAAATAATCTA 58.885 40.000 13.54 0.00 41.87 1.98
1751 4374 6.769341 GGTGGACGGTACCAAAAATAATCTAT 59.231 38.462 13.54 0.00 41.87 1.98
1788 4413 3.569250 AAAACCGGACGAAAATGATGG 57.431 42.857 9.46 0.00 0.00 3.51
1789 4414 1.459450 AACCGGACGAAAATGATGGG 58.541 50.000 9.46 0.00 0.00 4.00
1790 4415 0.616371 ACCGGACGAAAATGATGGGA 59.384 50.000 9.46 0.00 0.00 4.37
1791 4416 1.014352 CCGGACGAAAATGATGGGAC 58.986 55.000 0.00 0.00 0.00 4.46
1792 4417 0.650512 CGGACGAAAATGATGGGACG 59.349 55.000 0.00 0.00 0.00 4.79
1793 4418 1.737696 CGGACGAAAATGATGGGACGA 60.738 52.381 0.00 0.00 0.00 4.20
1794 4419 2.352388 GGACGAAAATGATGGGACGAA 58.648 47.619 0.00 0.00 0.00 3.85
1795 4420 2.745281 GGACGAAAATGATGGGACGAAA 59.255 45.455 0.00 0.00 0.00 3.46
1796 4421 3.189702 GGACGAAAATGATGGGACGAAAA 59.810 43.478 0.00 0.00 0.00 2.29
1797 4422 4.142469 GGACGAAAATGATGGGACGAAAAT 60.142 41.667 0.00 0.00 0.00 1.82
1798 4423 5.385509 ACGAAAATGATGGGACGAAAATT 57.614 34.783 0.00 0.00 0.00 1.82
1799 4424 5.160641 ACGAAAATGATGGGACGAAAATTG 58.839 37.500 0.00 0.00 0.00 2.32
1800 4425 5.048364 ACGAAAATGATGGGACGAAAATTGA 60.048 36.000 0.00 0.00 0.00 2.57
1801 4426 5.286082 CGAAAATGATGGGACGAAAATTGAC 59.714 40.000 0.00 0.00 0.00 3.18
1802 4427 4.718940 AATGATGGGACGAAAATTGACC 57.281 40.909 0.00 0.00 0.00 4.02
1803 4428 3.147553 TGATGGGACGAAAATTGACCA 57.852 42.857 0.00 0.00 0.00 4.02
1804 4429 3.081061 TGATGGGACGAAAATTGACCAG 58.919 45.455 0.00 0.00 0.00 4.00
1805 4430 1.243902 TGGGACGAAAATTGACCAGC 58.756 50.000 0.00 0.00 0.00 4.85
1806 4431 0.168128 GGGACGAAAATTGACCAGCG 59.832 55.000 0.00 0.00 0.00 5.18
1807 4432 0.168128 GGACGAAAATTGACCAGCGG 59.832 55.000 0.00 0.00 0.00 5.52
1808 4433 1.153353 GACGAAAATTGACCAGCGGA 58.847 50.000 1.50 0.00 0.00 5.54
1809 4434 1.128692 GACGAAAATTGACCAGCGGAG 59.871 52.381 1.50 0.00 0.00 4.63
1810 4435 1.270625 ACGAAAATTGACCAGCGGAGA 60.271 47.619 1.50 0.00 0.00 3.71
1811 4436 1.128692 CGAAAATTGACCAGCGGAGAC 59.871 52.381 1.50 0.00 0.00 3.36
1812 4437 2.427506 GAAAATTGACCAGCGGAGACT 58.572 47.619 1.50 0.00 0.00 3.24
1813 4438 3.596214 GAAAATTGACCAGCGGAGACTA 58.404 45.455 1.50 0.00 0.00 2.59
1814 4439 2.674796 AATTGACCAGCGGAGACTAC 57.325 50.000 1.50 0.00 0.00 2.73
1815 4440 0.824759 ATTGACCAGCGGAGACTACC 59.175 55.000 1.50 0.00 0.00 3.18
1816 4441 0.541063 TTGACCAGCGGAGACTACCA 60.541 55.000 1.50 0.00 0.00 3.25
1817 4442 0.541063 TGACCAGCGGAGACTACCAA 60.541 55.000 1.50 0.00 0.00 3.67
1818 4443 0.108756 GACCAGCGGAGACTACCAAC 60.109 60.000 1.50 0.00 0.00 3.77
1819 4444 0.542232 ACCAGCGGAGACTACCAACT 60.542 55.000 1.50 0.00 0.00 3.16
1820 4445 0.108615 CCAGCGGAGACTACCAACTG 60.109 60.000 0.00 0.00 35.12 3.16
1821 4446 0.737715 CAGCGGAGACTACCAACTGC 60.738 60.000 0.00 0.00 35.23 4.40
1822 4447 0.900647 AGCGGAGACTACCAACTGCT 60.901 55.000 0.00 0.00 39.67 4.24
1823 4448 0.037232 GCGGAGACTACCAACTGCTT 60.037 55.000 0.00 0.00 0.00 3.91
1824 4449 1.997669 CGGAGACTACCAACTGCTTC 58.002 55.000 0.00 0.00 0.00 3.86
1825 4450 1.272490 CGGAGACTACCAACTGCTTCA 59.728 52.381 0.00 0.00 0.00 3.02
1826 4451 2.093973 CGGAGACTACCAACTGCTTCAT 60.094 50.000 0.00 0.00 0.00 2.57
1827 4452 3.617531 CGGAGACTACCAACTGCTTCATT 60.618 47.826 0.00 0.00 0.00 2.57
1828 4453 4.381612 CGGAGACTACCAACTGCTTCATTA 60.382 45.833 0.00 0.00 0.00 1.90
1829 4454 5.112686 GGAGACTACCAACTGCTTCATTAG 58.887 45.833 0.00 0.00 0.00 1.73
1830 4455 5.091261 AGACTACCAACTGCTTCATTAGG 57.909 43.478 0.00 0.00 0.00 2.69
1831 4456 4.777896 AGACTACCAACTGCTTCATTAGGA 59.222 41.667 0.00 0.00 0.00 2.94
1832 4457 5.091261 ACTACCAACTGCTTCATTAGGAG 57.909 43.478 0.00 0.00 46.91 3.69
1843 4468 7.291411 TGCTTCATTAGGAGTAGAGATAACC 57.709 40.000 0.00 0.00 0.00 2.85
1844 4469 7.069986 TGCTTCATTAGGAGTAGAGATAACCT 58.930 38.462 0.00 0.00 35.11 3.50
1845 4470 8.225416 TGCTTCATTAGGAGTAGAGATAACCTA 58.775 37.037 0.00 0.00 32.90 3.08
1846 4471 9.250246 GCTTCATTAGGAGTAGAGATAACCTAT 57.750 37.037 0.00 0.00 33.98 2.57
1908 4533 1.178276 CGGAGACTACCAACTGCTCT 58.822 55.000 0.00 0.00 0.00 4.09
1935 4560 3.438668 GGAGTAGAGATTCTCCCCCATCA 60.439 52.174 10.09 0.00 42.96 3.07
1974 4599 1.941377 TCGTAACCCTAGAGCCCAAA 58.059 50.000 0.00 0.00 0.00 3.28
2196 4875 5.301835 ACATCTCGAATTTCTCCATCCAT 57.698 39.130 0.00 0.00 0.00 3.41
2207 4886 1.486310 CTCCATCCATTCCCTCGACAA 59.514 52.381 0.00 0.00 0.00 3.18
2282 4961 2.501610 GTCCATCGACCTCCAGGC 59.498 66.667 0.00 0.00 39.32 4.85
2338 5023 2.126307 CGAGTCTCGTGTGCCTGG 60.126 66.667 14.27 0.00 34.72 4.45
2417 5102 1.884579 CAAGCAGCTCAAACTCATGGT 59.115 47.619 0.00 0.00 0.00 3.55
2526 5211 3.932580 TACACGCAGCGAGGCCTTG 62.933 63.158 24.65 16.53 0.00 3.61
2731 5416 6.611642 TCACTCTAAATAAGTGCTACCCATCT 59.388 38.462 0.00 0.00 43.09 2.90
2797 5482 7.701078 TGCTGTCACTCGAAATAGATAACTAAC 59.299 37.037 0.00 0.00 32.04 2.34
2932 5618 4.498682 GGATGAATCTGGCTTATGTGCAAC 60.499 45.833 0.00 0.00 37.35 4.17
2934 5620 4.842574 TGAATCTGGCTTATGTGCAACTA 58.157 39.130 0.00 0.00 38.04 2.24
2962 5648 9.147732 GTTCCCCTTCCTATTCATTTATTCAAT 57.852 33.333 0.00 0.00 0.00 2.57
3263 7178 7.806149 TCAGAACATACTGTAACGTTATGTG 57.194 36.000 11.86 6.92 38.79 3.21
3511 7426 4.464069 AACAGAGATACTCAGTGCTTCC 57.536 45.455 0.00 0.00 30.85 3.46
3515 7430 5.046014 ACAGAGATACTCAGTGCTTCCAATT 60.046 40.000 0.00 0.00 29.30 2.32
3814 7744 5.689383 AACTAAACACACTGCCTTGTATG 57.311 39.130 0.00 0.00 0.00 2.39
3878 7808 6.364261 TCGTGTGATTTATACGTTTGGTTTG 58.636 36.000 0.00 0.00 43.39 2.93
3890 7820 8.710835 ATACGTTTGGTTTGTTTTTCAAGATT 57.289 26.923 0.00 0.00 37.35 2.40
3953 7883 2.019249 CAGAATGCACAATGGACCGAT 58.981 47.619 0.00 0.00 0.00 4.18
3955 7885 2.016318 GAATGCACAATGGACCGATGA 58.984 47.619 0.00 0.00 0.00 2.92
4072 8002 5.118357 CAGCTCTTCGCATGATGTCTATTAC 59.882 44.000 0.00 0.00 42.61 1.89
4169 8102 4.997905 TGCTCAAATCTTCTTCGACAAG 57.002 40.909 0.00 0.00 0.00 3.16
4173 8106 5.468540 TCAAATCTTCTTCGACAAGGAGA 57.531 39.130 0.00 0.00 46.67 3.71
4237 8170 9.574516 ATTATTGGATAATTTGTGGAGTACTCC 57.425 33.333 31.61 31.61 39.97 3.85
4250 8183 5.997384 GGAGTACTCCCTCTGTAAAGAAA 57.003 43.478 28.87 0.00 43.94 2.52
4251 8184 6.547930 GGAGTACTCCCTCTGTAAAGAAAT 57.452 41.667 28.87 0.00 43.94 2.17
4252 8185 7.657023 GGAGTACTCCCTCTGTAAAGAAATA 57.343 40.000 28.87 0.00 43.94 1.40
4253 8186 8.252624 GGAGTACTCCCTCTGTAAAGAAATAT 57.747 38.462 28.87 0.00 43.94 1.28
4254 8187 9.364653 GGAGTACTCCCTCTGTAAAGAAATATA 57.635 37.037 28.87 0.00 43.94 0.86
4259 8192 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
4260 8193 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
4261 8194 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
4262 8195 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
4263 8196 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
4293 8226 8.636213 TCACTACTTATATTTCTTTACGGAGGG 58.364 37.037 0.00 0.00 0.00 4.30
4414 8347 1.747355 GAGAAACGACCGATGGAGGTA 59.253 52.381 0.00 0.00 46.09 3.08
4415 8348 2.361438 GAGAAACGACCGATGGAGGTAT 59.639 50.000 0.00 0.00 46.09 2.73
4416 8349 2.361438 AGAAACGACCGATGGAGGTATC 59.639 50.000 0.00 0.00 46.09 2.24
4417 8350 1.771565 AACGACCGATGGAGGTATCA 58.228 50.000 0.00 0.00 46.09 2.15
4418 8351 1.319541 ACGACCGATGGAGGTATCAG 58.680 55.000 0.00 0.00 46.09 2.90
4419 8352 0.598562 CGACCGATGGAGGTATCAGG 59.401 60.000 0.00 0.00 46.09 3.86
4420 8353 1.705873 GACCGATGGAGGTATCAGGT 58.294 55.000 0.00 0.00 46.09 4.00
4421 8354 2.812983 CGACCGATGGAGGTATCAGGTA 60.813 54.545 0.00 0.00 46.09 3.08
4545 8478 4.018779 TCCCTCCGATCCAAAATAAGTGTT 60.019 41.667 0.00 0.00 0.00 3.32
4643 8576 5.777732 ACCTGAGAGGATGGTATTGATACTC 59.222 44.000 0.00 0.00 37.67 2.59
4684 8631 8.742125 ATTACAAGATCAGGGTAATGAGGATA 57.258 34.615 12.87 0.00 36.61 2.59
4685 8632 6.678568 ACAAGATCAGGGTAATGAGGATAG 57.321 41.667 0.00 0.00 31.44 2.08
4686 8633 6.146760 ACAAGATCAGGGTAATGAGGATAGT 58.853 40.000 0.00 0.00 31.44 2.12
4687 8634 7.306013 ACAAGATCAGGGTAATGAGGATAGTA 58.694 38.462 0.00 0.00 31.44 1.82
4688 8635 7.453126 ACAAGATCAGGGTAATGAGGATAGTAG 59.547 40.741 0.00 0.00 31.44 2.57
4689 8636 7.109901 AGATCAGGGTAATGAGGATAGTAGT 57.890 40.000 0.00 0.00 31.44 2.73
4690 8637 6.951198 AGATCAGGGTAATGAGGATAGTAGTG 59.049 42.308 0.00 0.00 31.44 2.74
4691 8638 6.027025 TCAGGGTAATGAGGATAGTAGTGT 57.973 41.667 0.00 0.00 0.00 3.55
4692 8639 5.833667 TCAGGGTAATGAGGATAGTAGTGTG 59.166 44.000 0.00 0.00 0.00 3.82
4693 8640 5.833667 CAGGGTAATGAGGATAGTAGTGTGA 59.166 44.000 0.00 0.00 0.00 3.58
4694 8641 6.015856 CAGGGTAATGAGGATAGTAGTGTGAG 60.016 46.154 0.00 0.00 0.00 3.51
4695 8642 5.244178 GGGTAATGAGGATAGTAGTGTGAGG 59.756 48.000 0.00 0.00 0.00 3.86
4696 8643 6.069331 GGTAATGAGGATAGTAGTGTGAGGA 58.931 44.000 0.00 0.00 0.00 3.71
4697 8644 6.722129 GGTAATGAGGATAGTAGTGTGAGGAT 59.278 42.308 0.00 0.00 0.00 3.24
4734 8681 5.261216 TGAAGGGATATGAACAAGGGAAAC 58.739 41.667 0.00 0.00 0.00 2.78
4744 8691 9.747898 ATATGAACAAGGGAAACTACATGTTAA 57.252 29.630 2.30 0.00 38.03 2.01
4795 8743 5.795772 CAAGGTTTTCTTTGCAGATCATGCT 60.796 40.000 15.20 0.00 44.13 3.79
4843 8791 5.995282 ACTGGAATTGTTAATGACACGAGAA 59.005 36.000 0.00 0.00 38.18 2.87
4888 8836 2.172717 GCCTCTCTTTTATGCTGGGGTA 59.827 50.000 0.00 0.00 0.00 3.69
4931 8879 4.513318 TGCATTTCGAATACAAGACACACA 59.487 37.500 0.00 0.00 0.00 3.72
4937 8885 5.891451 TCGAATACAAGACACACAGATAGG 58.109 41.667 0.00 0.00 0.00 2.57
4968 8916 3.366679 GCATTGTTCTGAAGTCATGTGGG 60.367 47.826 0.00 0.00 0.00 4.61
5142 9106 4.314740 TTTGTGGTTTTGTAGTGATGCC 57.685 40.909 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 115 5.739935 GCCAATTTGAGCTTTTCTTTCTCCA 60.740 40.000 0.00 0.00 0.00 3.86
151 197 5.008613 GCTGAAAACTGAACCACACTCAATA 59.991 40.000 0.00 0.00 0.00 1.90
343 2840 0.469917 GGTGTGGTCCCGATGATGAT 59.530 55.000 0.00 0.00 0.00 2.45
417 2914 6.153340 GGGAAATCCTCTTGATGAATGAAACA 59.847 38.462 0.00 0.00 32.68 2.83
493 2990 7.715686 AGGTAGTATTTGCTAAGCTTATTCACC 59.284 37.037 6.64 4.95 0.00 4.02
1187 3739 1.227943 GCTGAACCACAGGTCAGCA 60.228 57.895 24.30 6.15 46.15 4.41
1345 3964 4.585526 GCATCGCGGATCCGACCA 62.586 66.667 37.64 19.63 40.40 4.02
1592 4214 0.548682 ACCTTCCTGCCAGGATCTGT 60.549 55.000 15.62 9.27 45.34 3.41
1596 4218 2.311854 CCCACCTTCCTGCCAGGAT 61.312 63.158 15.62 0.00 45.34 3.24
1689 4311 4.828387 TGGTTTTACGAAAATTAGCCAGGT 59.172 37.500 0.00 0.00 32.22 4.00
1704 4326 5.091910 CAACTCCTCTTCGTTGGTTTTAC 57.908 43.478 0.00 0.00 37.45 2.01
1716 4338 0.763223 ACCGTCCACCAACTCCTCTT 60.763 55.000 0.00 0.00 0.00 2.85
1719 4341 1.190178 GGTACCGTCCACCAACTCCT 61.190 60.000 0.00 0.00 36.01 3.69
1777 4402 5.286082 GTCAATTTTCGTCCCATCATTTTCG 59.714 40.000 0.00 0.00 0.00 3.46
1783 4408 3.081061 CTGGTCAATTTTCGTCCCATCA 58.919 45.455 0.00 0.00 0.00 3.07
1784 4409 2.159379 GCTGGTCAATTTTCGTCCCATC 60.159 50.000 0.00 0.00 0.00 3.51
1785 4410 1.818674 GCTGGTCAATTTTCGTCCCAT 59.181 47.619 0.00 0.00 0.00 4.00
1786 4411 1.243902 GCTGGTCAATTTTCGTCCCA 58.756 50.000 0.00 0.00 0.00 4.37
1787 4412 0.168128 CGCTGGTCAATTTTCGTCCC 59.832 55.000 0.00 0.00 0.00 4.46
1788 4413 0.168128 CCGCTGGTCAATTTTCGTCC 59.832 55.000 0.00 0.00 0.00 4.79
1789 4414 1.128692 CTCCGCTGGTCAATTTTCGTC 59.871 52.381 0.00 0.00 0.00 4.20
1790 4415 1.156736 CTCCGCTGGTCAATTTTCGT 58.843 50.000 0.00 0.00 0.00 3.85
1791 4416 1.128692 GTCTCCGCTGGTCAATTTTCG 59.871 52.381 0.00 0.00 0.00 3.46
1792 4417 2.427506 AGTCTCCGCTGGTCAATTTTC 58.572 47.619 0.00 0.00 0.00 2.29
1793 4418 2.568623 AGTCTCCGCTGGTCAATTTT 57.431 45.000 0.00 0.00 0.00 1.82
1794 4419 2.354805 GGTAGTCTCCGCTGGTCAATTT 60.355 50.000 0.00 0.00 0.00 1.82
1795 4420 1.207329 GGTAGTCTCCGCTGGTCAATT 59.793 52.381 0.00 0.00 0.00 2.32
1796 4421 0.824759 GGTAGTCTCCGCTGGTCAAT 59.175 55.000 0.00 0.00 0.00 2.57
1797 4422 0.541063 TGGTAGTCTCCGCTGGTCAA 60.541 55.000 0.00 0.00 0.00 3.18
1798 4423 0.541063 TTGGTAGTCTCCGCTGGTCA 60.541 55.000 0.00 0.00 0.00 4.02
1799 4424 0.108756 GTTGGTAGTCTCCGCTGGTC 60.109 60.000 0.00 0.00 0.00 4.02
1800 4425 0.542232 AGTTGGTAGTCTCCGCTGGT 60.542 55.000 0.00 0.00 0.00 4.00
1801 4426 0.108615 CAGTTGGTAGTCTCCGCTGG 60.109 60.000 0.00 0.00 33.08 4.85
1802 4427 0.737715 GCAGTTGGTAGTCTCCGCTG 60.738 60.000 0.00 0.00 36.72 5.18
1803 4428 0.900647 AGCAGTTGGTAGTCTCCGCT 60.901 55.000 0.00 0.00 0.00 5.52
1804 4429 0.037232 AAGCAGTTGGTAGTCTCCGC 60.037 55.000 0.00 0.00 0.00 5.54
1805 4430 1.272490 TGAAGCAGTTGGTAGTCTCCG 59.728 52.381 0.00 0.00 0.00 4.63
1806 4431 3.618690 ATGAAGCAGTTGGTAGTCTCC 57.381 47.619 0.00 0.00 0.00 3.71
1807 4432 5.105310 TCCTAATGAAGCAGTTGGTAGTCTC 60.105 44.000 0.00 0.00 0.00 3.36
1808 4433 4.777896 TCCTAATGAAGCAGTTGGTAGTCT 59.222 41.667 0.00 0.00 0.00 3.24
1809 4434 5.086104 TCCTAATGAAGCAGTTGGTAGTC 57.914 43.478 0.00 0.00 0.00 2.59
1810 4435 4.532521 ACTCCTAATGAAGCAGTTGGTAGT 59.467 41.667 0.00 0.00 0.00 2.73
1811 4436 5.091261 ACTCCTAATGAAGCAGTTGGTAG 57.909 43.478 0.00 0.00 0.00 3.18
1812 4437 5.955959 TCTACTCCTAATGAAGCAGTTGGTA 59.044 40.000 0.00 0.00 0.00 3.25
1813 4438 4.777896 TCTACTCCTAATGAAGCAGTTGGT 59.222 41.667 0.00 0.00 0.00 3.67
1814 4439 5.127845 TCTCTACTCCTAATGAAGCAGTTGG 59.872 44.000 0.00 0.00 0.00 3.77
1815 4440 6.214191 TCTCTACTCCTAATGAAGCAGTTG 57.786 41.667 0.00 0.00 0.00 3.16
1816 4441 8.417884 GTTATCTCTACTCCTAATGAAGCAGTT 58.582 37.037 0.00 0.00 0.00 3.16
1817 4442 7.014808 GGTTATCTCTACTCCTAATGAAGCAGT 59.985 40.741 0.00 0.00 0.00 4.40
1818 4443 7.232534 AGGTTATCTCTACTCCTAATGAAGCAG 59.767 40.741 0.00 0.00 0.00 4.24
1819 4444 7.069986 AGGTTATCTCTACTCCTAATGAAGCA 58.930 38.462 0.00 0.00 0.00 3.91
1820 4445 7.533289 AGGTTATCTCTACTCCTAATGAAGC 57.467 40.000 0.00 0.00 0.00 3.86
1851 4476 3.317993 CCCATCACTTTCGTCTGGTTTTT 59.682 43.478 0.00 0.00 0.00 1.94
1852 4477 2.884639 CCCATCACTTTCGTCTGGTTTT 59.115 45.455 0.00 0.00 0.00 2.43
1853 4478 2.105821 TCCCATCACTTTCGTCTGGTTT 59.894 45.455 0.00 0.00 0.00 3.27
1854 4479 1.697432 TCCCATCACTTTCGTCTGGTT 59.303 47.619 0.00 0.00 0.00 3.67
1855 4480 1.002087 GTCCCATCACTTTCGTCTGGT 59.998 52.381 0.00 0.00 0.00 4.00
1856 4481 1.726853 GTCCCATCACTTTCGTCTGG 58.273 55.000 0.00 0.00 0.00 3.86
1857 4482 1.067846 TCGTCCCATCACTTTCGTCTG 60.068 52.381 0.00 0.00 0.00 3.51
1858 4483 1.254026 TCGTCCCATCACTTTCGTCT 58.746 50.000 0.00 0.00 0.00 4.18
1859 4484 2.074547 TTCGTCCCATCACTTTCGTC 57.925 50.000 0.00 0.00 0.00 4.20
1908 4533 6.155247 GGGGGAGAATCTCTACTCCTAATA 57.845 45.833 10.38 0.00 45.06 0.98
1935 4560 3.690460 GATTTCCCCTCACACTTCACAT 58.310 45.455 0.00 0.00 0.00 3.21
1974 4599 2.045926 GAGGGCGCCATGTCAGTT 60.046 61.111 30.85 1.98 0.00 3.16
2196 4875 1.671742 GGAGTGCTTGTCGAGGGAA 59.328 57.895 0.00 0.00 0.00 3.97
2288 4967 2.494870 ACAGAAGAATGAATGGCCAAGC 59.505 45.455 10.96 5.18 0.00 4.01
2292 4977 4.268359 AGAAGACAGAAGAATGAATGGCC 58.732 43.478 0.00 0.00 0.00 5.36
2296 4981 7.201591 CGTGCATAAGAAGACAGAAGAATGAAT 60.202 37.037 0.00 0.00 0.00 2.57
2301 4986 5.134202 TCGTGCATAAGAAGACAGAAGAA 57.866 39.130 0.00 0.00 0.00 2.52
2354 5039 1.150992 ACGGGGAGAGGAGGTATCG 59.849 63.158 0.00 0.00 0.00 2.92
2417 5102 2.627945 CATTCGGAGGGAATTTGACGA 58.372 47.619 0.00 0.00 42.77 4.20
2547 5232 4.570874 GGCTCCGGAGATTGGCCC 62.571 72.222 35.69 20.86 37.12 5.80
2797 5482 3.348119 TGCCTAGTATCTATCAGCTCGG 58.652 50.000 0.00 0.00 0.00 4.63
2932 5618 9.813826 AATAAATGAATAGGAAGGGGAACATAG 57.186 33.333 0.00 0.00 0.00 2.23
2934 5620 8.288812 TGAATAAATGAATAGGAAGGGGAACAT 58.711 33.333 0.00 0.00 0.00 2.71
2987 5836 9.429600 GGCATTTCGTACATAACATTAAAGTAC 57.570 33.333 0.00 0.00 33.53 2.73
3051 5900 9.667107 TTACATTTATTTTTGTGTGGACCAAAA 57.333 25.926 0.00 0.00 39.36 2.44
3263 7178 0.038343 TGCTGGAAAAGGCATTTCGC 60.038 50.000 8.88 8.26 46.93 4.70
3359 7274 1.937278 TCGCCACTTAACACGAACAA 58.063 45.000 0.00 0.00 0.00 2.83
3511 7426 8.844441 ATTGCAAGAACATTTTGAACAAATTG 57.156 26.923 4.94 15.73 37.55 2.32
3515 7430 9.985318 CTAAAATTGCAAGAACATTTTGAACAA 57.015 25.926 14.85 0.00 0.00 2.83
3953 7883 1.492599 TGAAGGTTGGGACACATGTCA 59.507 47.619 13.77 0.00 46.47 3.58
3955 7885 2.091885 ACTTGAAGGTTGGGACACATGT 60.092 45.455 0.00 0.00 39.29 3.21
4051 7981 6.676950 AGAGTAATAGACATCATGCGAAGAG 58.323 40.000 0.00 0.00 0.00 2.85
4061 7991 7.035840 TCCGTAACCAAGAGTAATAGACATC 57.964 40.000 0.00 0.00 0.00 3.06
4072 8002 4.995487 ACTTTAAGCTTCCGTAACCAAGAG 59.005 41.667 0.00 0.00 0.00 2.85
4169 8102 7.907214 TTTGATAGCTGAAGTTTAAGTCTCC 57.093 36.000 0.00 0.00 0.00 3.71
4173 8106 8.656849 CGTACATTTGATAGCTGAAGTTTAAGT 58.343 33.333 0.00 0.00 0.00 2.24
4233 8166 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
4234 8167 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
4235 8168 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
4236 8169 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
4237 8170 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
4267 8200 8.636213 CCCTCCGTAAAGAAATATAAGTAGTGA 58.364 37.037 0.00 0.00 0.00 3.41
4268 8201 8.636213 TCCCTCCGTAAAGAAATATAAGTAGTG 58.364 37.037 0.00 0.00 0.00 2.74
4269 8202 8.773033 TCCCTCCGTAAAGAAATATAAGTAGT 57.227 34.615 0.00 0.00 0.00 2.73
4270 8203 8.858094 ACTCCCTCCGTAAAGAAATATAAGTAG 58.142 37.037 0.00 0.00 0.00 2.57
4271 8204 8.773033 ACTCCCTCCGTAAAGAAATATAAGTA 57.227 34.615 0.00 0.00 0.00 2.24
4272 8205 7.672122 ACTCCCTCCGTAAAGAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
4273 8206 8.087136 GGTACTCCCTCCGTAAAGAAATATAAG 58.913 40.741 0.00 0.00 0.00 1.73
4274 8207 7.786464 AGGTACTCCCTCCGTAAAGAAATATAA 59.214 37.037 0.00 0.00 40.71 0.98
4275 8208 7.300658 AGGTACTCCCTCCGTAAAGAAATATA 58.699 38.462 0.00 0.00 40.71 0.86
4276 8209 6.141790 AGGTACTCCCTCCGTAAAGAAATAT 58.858 40.000 0.00 0.00 40.71 1.28
4277 8210 5.522641 AGGTACTCCCTCCGTAAAGAAATA 58.477 41.667 0.00 0.00 40.71 1.40
4278 8211 4.359996 AGGTACTCCCTCCGTAAAGAAAT 58.640 43.478 0.00 0.00 40.71 2.17
4279 8212 3.782992 AGGTACTCCCTCCGTAAAGAAA 58.217 45.455 0.00 0.00 40.71 2.52
4280 8213 3.463048 AGGTACTCCCTCCGTAAAGAA 57.537 47.619 0.00 0.00 40.71 2.52
4281 8214 3.525199 ACTAGGTACTCCCTCCGTAAAGA 59.475 47.826 0.00 0.00 44.81 2.52
4282 8215 3.895998 ACTAGGTACTCCCTCCGTAAAG 58.104 50.000 0.00 0.00 44.81 1.85
4283 8216 5.440610 CTTACTAGGTACTCCCTCCGTAAA 58.559 45.833 0.00 0.00 44.81 2.01
4284 8217 4.141390 CCTTACTAGGTACTCCCTCCGTAA 60.141 50.000 0.00 0.00 44.81 3.18
4285 8218 3.392616 CCTTACTAGGTACTCCCTCCGTA 59.607 52.174 0.00 0.00 44.81 4.02
4286 8219 2.174424 CCTTACTAGGTACTCCCTCCGT 59.826 54.545 0.00 0.00 44.81 4.69
4287 8220 2.861274 CCTTACTAGGTACTCCCTCCG 58.139 57.143 0.00 0.00 44.81 4.63
4288 8221 2.596346 GCCTTACTAGGTACTCCCTCC 58.404 57.143 0.00 0.00 44.81 4.30
4289 8222 2.596346 GGCCTTACTAGGTACTCCCTC 58.404 57.143 0.00 0.00 44.81 4.30
4291 8224 1.714541 GGGCCTTACTAGGTACTCCC 58.285 60.000 0.84 0.00 44.00 4.30
4292 8225 1.714541 GGGGCCTTACTAGGTACTCC 58.285 60.000 0.84 0.00 44.00 3.85
4293 8226 1.326328 CGGGGCCTTACTAGGTACTC 58.674 60.000 0.84 0.00 44.00 2.59
4414 8347 8.520119 ACCCCTGTAAAATATACATACCTGAT 57.480 34.615 0.00 0.00 0.00 2.90
4415 8348 7.941053 ACCCCTGTAAAATATACATACCTGA 57.059 36.000 0.00 0.00 0.00 3.86
4416 8349 9.667107 CATACCCCTGTAAAATATACATACCTG 57.333 37.037 0.00 0.00 0.00 4.00
4417 8350 8.832735 CCATACCCCTGTAAAATATACATACCT 58.167 37.037 0.00 0.00 0.00 3.08
4418 8351 7.555195 GCCATACCCCTGTAAAATATACATACC 59.445 40.741 0.00 0.00 0.00 2.73
4419 8352 7.279313 CGCCATACCCCTGTAAAATATACATAC 59.721 40.741 0.00 0.00 0.00 2.39
4420 8353 7.332557 CGCCATACCCCTGTAAAATATACATA 58.667 38.462 0.00 0.00 0.00 2.29
4421 8354 6.177610 CGCCATACCCCTGTAAAATATACAT 58.822 40.000 0.00 0.00 0.00 2.29
4567 8500 9.887406 ATACAAAATAAGTGTCGTTGTTTTAGG 57.113 29.630 0.00 0.00 31.30 2.69
4643 8576 2.091055 TGTAATCTCTCCCTCCCTCCTG 60.091 54.545 0.00 0.00 0.00 3.86
4684 8631 3.646162 TCAACCACAATCCTCACACTACT 59.354 43.478 0.00 0.00 0.00 2.57
4685 8632 4.002906 TCAACCACAATCCTCACACTAC 57.997 45.455 0.00 0.00 0.00 2.73
4686 8633 4.698201 TTCAACCACAATCCTCACACTA 57.302 40.909 0.00 0.00 0.00 2.74
4687 8634 3.576078 TTCAACCACAATCCTCACACT 57.424 42.857 0.00 0.00 0.00 3.55
4688 8635 3.632145 ACTTTCAACCACAATCCTCACAC 59.368 43.478 0.00 0.00 0.00 3.82
4689 8636 3.897239 ACTTTCAACCACAATCCTCACA 58.103 40.909 0.00 0.00 0.00 3.58
4690 8637 4.338118 TCAACTTTCAACCACAATCCTCAC 59.662 41.667 0.00 0.00 0.00 3.51
4691 8638 4.531854 TCAACTTTCAACCACAATCCTCA 58.468 39.130 0.00 0.00 0.00 3.86
4692 8639 5.507985 CCTTCAACTTTCAACCACAATCCTC 60.508 44.000 0.00 0.00 0.00 3.71
4693 8640 4.342092 CCTTCAACTTTCAACCACAATCCT 59.658 41.667 0.00 0.00 0.00 3.24
4694 8641 4.501400 CCCTTCAACTTTCAACCACAATCC 60.501 45.833 0.00 0.00 0.00 3.01
4695 8642 4.340950 TCCCTTCAACTTTCAACCACAATC 59.659 41.667 0.00 0.00 0.00 2.67
4696 8643 4.285863 TCCCTTCAACTTTCAACCACAAT 58.714 39.130 0.00 0.00 0.00 2.71
4697 8644 3.702792 TCCCTTCAACTTTCAACCACAA 58.297 40.909 0.00 0.00 0.00 3.33
4744 8691 9.553064 GACAGAATATCCAGAAATCACTACAAT 57.447 33.333 0.00 0.00 0.00 2.71
4764 8711 3.766591 TGCAAAGAAAACCTTGGACAGAA 59.233 39.130 0.00 0.00 34.79 3.02
4888 8836 3.560896 GCATGTCAAGGCACAAAAACATT 59.439 39.130 0.00 0.00 31.96 2.71
4931 8879 3.960571 ACAATGCTTTCACTGCCTATCT 58.039 40.909 0.00 0.00 0.00 1.98
4937 8885 3.631145 TCAGAACAATGCTTTCACTGC 57.369 42.857 0.00 0.00 0.00 4.40
5123 9087 3.222173 AGGCATCACTACAAAACCACA 57.778 42.857 0.00 0.00 0.00 4.17
5142 9106 8.445493 TGTAAAGCATATGATATCGAATGCAAG 58.555 33.333 29.25 6.64 45.62 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.