Multiple sequence alignment - TraesCS5A01G208400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G208400 chr5A 100.000 5113 0 0 1 5113 421855137 421860249 0.000000e+00 9443.0
1 TraesCS5A01G208400 chr5A 98.842 259 3 0 1 259 326034001 326034259 3.610000e-126 462.0
2 TraesCS5A01G208400 chr5A 93.548 279 14 3 2343 2618 34842168 34841891 3.680000e-111 412.0
3 TraesCS5A01G208400 chr5A 79.412 306 47 13 3183 3476 535148965 535149266 8.680000e-48 202.0
4 TraesCS5A01G208400 chr5A 87.755 49 4 2 745 792 595107034 595107081 7.150000e-04 56.5
5 TraesCS5A01G208400 chr5B 93.650 2567 100 25 2606 5113 375655036 375657598 0.000000e+00 3779.0
6 TraesCS5A01G208400 chr5B 94.874 1346 60 7 1004 2346 375653699 375655038 0.000000e+00 2095.0
7 TraesCS5A01G208400 chr5B 78.606 617 123 8 1073 1685 375803155 375803766 2.870000e-107 399.0
8 TraesCS5A01G208400 chr5B 84.153 183 23 5 612 790 147435324 147435144 6.810000e-39 172.0
9 TraesCS5A01G208400 chr5B 78.261 276 42 14 3203 3466 507921213 507921482 1.470000e-35 161.0
10 TraesCS5A01G208400 chr5B 79.397 199 25 10 607 801 49557701 49557515 5.370000e-25 126.0
11 TraesCS5A01G208400 chr5B 84.158 101 12 1 816 912 546566125 546566225 1.520000e-15 95.3
12 TraesCS5A01G208400 chr5B 100.000 29 0 0 750 778 641102496 641102468 3.000000e-03 54.7
13 TraesCS5A01G208400 chr5B 100.000 29 0 0 750 778 641102906 641102878 3.000000e-03 54.7
14 TraesCS5A01G208400 chr5D 93.109 2554 98 29 2606 5113 324103158 324105679 0.000000e+00 3670.0
15 TraesCS5A01G208400 chr5D 95.982 1344 47 4 1004 2346 324101823 324103160 0.000000e+00 2176.0
16 TraesCS5A01G208400 chr5D 89.274 317 25 5 259 569 324100957 324101270 6.210000e-104 388.0
17 TraesCS5A01G208400 chr5D 77.096 668 150 3 1062 1729 324376781 324377445 2.890000e-102 383.0
18 TraesCS5A01G208400 chr5D 79.443 287 47 10 3199 3476 421679433 421679150 5.220000e-45 193.0
19 TraesCS5A01G208400 chr5D 83.824 204 15 9 812 998 324101572 324101774 1.460000e-40 178.0
20 TraesCS5A01G208400 chr5D 82.581 155 18 5 605 757 306791091 306791238 1.490000e-25 128.0
21 TraesCS5A01G208400 chr7A 99.222 257 2 0 2 258 555954091 555954347 1.000000e-126 464.0
22 TraesCS5A01G208400 chr7A 98.837 258 3 0 1 258 420611532 420611789 1.300000e-125 460.0
23 TraesCS5A01G208400 chr6A 98.842 259 3 0 1 259 139789737 139789995 3.610000e-126 462.0
24 TraesCS5A01G208400 chr4A 98.837 258 3 0 1 258 600487388 600487645 1.300000e-125 460.0
25 TraesCS5A01G208400 chr2A 98.467 261 4 0 1 261 114194944 114194684 1.300000e-125 460.0
26 TraesCS5A01G208400 chr2A 97.378 267 6 1 1 267 584339923 584339658 2.170000e-123 453.0
27 TraesCS5A01G208400 chr1A 98.837 258 3 0 1 258 318998517 318998260 1.300000e-125 460.0
28 TraesCS5A01G208400 chr2D 97.378 267 7 0 1 267 315056410 315056676 6.030000e-124 455.0
29 TraesCS5A01G208400 chr2D 95.420 262 10 2 2348 2608 112871206 112870946 2.850000e-112 416.0
30 TraesCS5A01G208400 chr2D 93.455 275 15 3 2349 2622 37526619 37526891 6.160000e-109 405.0
31 TraesCS5A01G208400 chr2D 93.727 271 14 3 2341 2608 644999130 644999400 2.220000e-108 403.0
32 TraesCS5A01G208400 chr7B 94.118 272 14 2 2341 2611 598296410 598296140 3.680000e-111 412.0
33 TraesCS5A01G208400 chr3D 95.057 263 12 1 2350 2611 62813854 62813592 3.680000e-111 412.0
34 TraesCS5A01G208400 chr3D 80.247 162 25 3 601 758 515958684 515958526 1.160000e-21 115.0
35 TraesCS5A01G208400 chr2B 94.717 265 13 1 2343 2606 166592378 166592114 1.320000e-110 411.0
36 TraesCS5A01G208400 chr2B 84.713 157 18 3 606 758 748585831 748585985 8.870000e-33 152.0
37 TraesCS5A01G208400 chr2B 81.410 156 23 5 607 757 67399891 67399737 6.950000e-24 122.0
38 TraesCS5A01G208400 chr1D 93.818 275 14 3 2341 2614 365323993 365323721 1.320000e-110 411.0
39 TraesCS5A01G208400 chr1D 86.806 144 17 1 640 781 61326969 61327112 5.300000e-35 159.0
40 TraesCS5A01G208400 chr1D 87.023 131 10 4 601 727 490098686 490098559 1.920000e-29 141.0
41 TraesCS5A01G208400 chr3A 94.007 267 12 3 2344 2608 552211997 552211733 7.970000e-108 401.0
42 TraesCS5A01G208400 chr3A 90.244 123 12 0 640 762 230539998 230540120 1.470000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G208400 chr5A 421855137 421860249 5112 False 9443 9443 100.00000 1 5113 1 chr5A.!!$F2 5112
1 TraesCS5A01G208400 chr5B 375653699 375657598 3899 False 2937 3779 94.26200 1004 5113 2 chr5B.!!$F4 4109
2 TraesCS5A01G208400 chr5B 375803155 375803766 611 False 399 399 78.60600 1073 1685 1 chr5B.!!$F1 612
3 TraesCS5A01G208400 chr5D 324100957 324105679 4722 False 1603 3670 90.54725 259 5113 4 chr5D.!!$F3 4854
4 TraesCS5A01G208400 chr5D 324376781 324377445 664 False 383 383 77.09600 1062 1729 1 chr5D.!!$F2 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 690 0.178861 TGAAGGAAGGAGAAGGGCCT 60.179 55.000 0.00 0.0 37.35 5.19 F
1474 1652 0.178891 TCACCTCCCTCAGCCTCTTT 60.179 55.000 0.00 0.0 0.00 2.52 F
1696 1877 1.004044 CCCAATCTCAGGCACTTGACT 59.996 52.381 0.00 0.0 34.60 3.41 F
2003 2187 2.154462 GTCTGAAAAGCTAAGCTGCCA 58.846 47.619 0.00 0.0 39.62 4.92 F
3691 3878 1.231221 AATTGGTGTTGTTCGCGCTA 58.769 45.000 5.56 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2176 2360 0.182061 TGGAGTACCTAGATCGCGGT 59.818 55.000 6.13 0.0 37.04 5.68 R
3284 3471 1.454201 TTCGACGCCAATTAATGCCA 58.546 45.000 0.00 0.0 0.00 4.92 R
3691 3878 3.502211 CGAGGCACTGACCAAACTAAAAT 59.498 43.478 0.00 0.0 41.55 1.82 R
3713 3900 0.331616 ATTCCACTTGTACCCCTGCC 59.668 55.000 0.00 0.0 0.00 4.85 R
4584 4811 1.977293 GCCTAAGACTGGGGGCTCAG 61.977 65.000 6.80 6.8 41.20 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.939103 CTGTATCCCAGTTTGTGCTAGC 59.061 50.000 8.10 8.10 36.37 3.42
22 23 2.289565 GTATCCCAGTTTGTGCTAGCC 58.710 52.381 13.29 4.15 0.00 3.93
23 24 0.995024 ATCCCAGTTTGTGCTAGCCT 59.005 50.000 13.29 0.00 0.00 4.58
24 25 0.771127 TCCCAGTTTGTGCTAGCCTT 59.229 50.000 13.29 0.00 0.00 4.35
25 26 1.168714 CCCAGTTTGTGCTAGCCTTC 58.831 55.000 13.29 3.48 0.00 3.46
26 27 1.271597 CCCAGTTTGTGCTAGCCTTCT 60.272 52.381 13.29 0.83 0.00 2.85
27 28 2.508526 CCAGTTTGTGCTAGCCTTCTT 58.491 47.619 13.29 0.00 0.00 2.52
28 29 3.559171 CCCAGTTTGTGCTAGCCTTCTTA 60.559 47.826 13.29 0.00 0.00 2.10
29 30 4.072131 CCAGTTTGTGCTAGCCTTCTTAA 58.928 43.478 13.29 0.00 0.00 1.85
30 31 4.154918 CCAGTTTGTGCTAGCCTTCTTAAG 59.845 45.833 13.29 0.00 0.00 1.85
45 46 7.694388 CCTTCTTAAGGCAAACTTGTTTAAC 57.306 36.000 1.85 0.00 42.78 2.01
46 47 7.489160 CCTTCTTAAGGCAAACTTGTTTAACT 58.511 34.615 1.85 0.00 42.78 2.24
47 48 7.979537 CCTTCTTAAGGCAAACTTGTTTAACTT 59.020 33.333 1.85 14.41 42.78 2.66
50 51 9.959749 TCTTAAGGCAAACTTGTTTAACTTATG 57.040 29.630 15.68 16.48 40.37 1.90
51 52 9.744468 CTTAAGGCAAACTTGTTTAACTTATGT 57.256 29.630 15.68 0.00 40.37 2.29
52 53 9.738832 TTAAGGCAAACTTGTTTAACTTATGTC 57.261 29.630 15.68 1.30 40.37 3.06
53 54 7.582667 AGGCAAACTTGTTTAACTTATGTCT 57.417 32.000 0.00 0.00 0.00 3.41
54 55 7.425606 AGGCAAACTTGTTTAACTTATGTCTG 58.574 34.615 0.00 0.00 0.00 3.51
55 56 7.068226 AGGCAAACTTGTTTAACTTATGTCTGT 59.932 33.333 0.00 0.00 0.00 3.41
56 57 8.347035 GGCAAACTTGTTTAACTTATGTCTGTA 58.653 33.333 0.00 0.00 0.00 2.74
57 58 9.166126 GCAAACTTGTTTAACTTATGTCTGTAC 57.834 33.333 0.00 0.00 0.00 2.90
60 61 9.826574 AACTTGTTTAACTTATGTCTGTACTCA 57.173 29.630 0.00 0.00 0.00 3.41
61 62 9.477484 ACTTGTTTAACTTATGTCTGTACTCAG 57.523 33.333 0.00 0.00 42.54 3.35
62 63 9.692749 CTTGTTTAACTTATGTCTGTACTCAGA 57.307 33.333 0.00 0.00 46.85 3.27
75 76 6.341316 TCTGTACTCAGATATTGTTGCTTCC 58.659 40.000 0.00 0.00 44.58 3.46
76 77 5.109210 TGTACTCAGATATTGTTGCTTCCG 58.891 41.667 0.00 0.00 0.00 4.30
77 78 2.939103 ACTCAGATATTGTTGCTTCCGC 59.061 45.455 0.00 0.00 0.00 5.54
78 79 3.201290 CTCAGATATTGTTGCTTCCGCT 58.799 45.455 0.00 0.00 36.97 5.52
79 80 2.938451 TCAGATATTGTTGCTTCCGCTG 59.062 45.455 0.00 0.00 36.97 5.18
80 81 2.938451 CAGATATTGTTGCTTCCGCTGA 59.062 45.455 0.00 0.00 36.97 4.26
81 82 2.939103 AGATATTGTTGCTTCCGCTGAC 59.061 45.455 0.00 0.00 36.97 3.51
82 83 2.472695 TATTGTTGCTTCCGCTGACT 57.527 45.000 0.00 0.00 36.97 3.41
83 84 1.160137 ATTGTTGCTTCCGCTGACTC 58.840 50.000 0.00 0.00 36.97 3.36
84 85 1.221466 TTGTTGCTTCCGCTGACTCG 61.221 55.000 0.00 0.00 36.97 4.18
85 86 1.664965 GTTGCTTCCGCTGACTCGT 60.665 57.895 0.00 0.00 36.97 4.18
86 87 1.372997 TTGCTTCCGCTGACTCGTC 60.373 57.895 0.00 0.00 36.97 4.20
87 88 1.806461 TTGCTTCCGCTGACTCGTCT 61.806 55.000 0.00 0.00 36.97 4.18
88 89 0.958876 TGCTTCCGCTGACTCGTCTA 60.959 55.000 0.00 0.00 36.97 2.59
89 90 0.382515 GCTTCCGCTGACTCGTCTAT 59.617 55.000 0.00 0.00 0.00 1.98
90 91 1.862008 GCTTCCGCTGACTCGTCTATG 60.862 57.143 0.00 0.00 0.00 2.23
91 92 1.671328 CTTCCGCTGACTCGTCTATGA 59.329 52.381 0.00 0.00 0.00 2.15
92 93 1.968704 TCCGCTGACTCGTCTATGAT 58.031 50.000 0.00 0.00 0.00 2.45
93 94 2.298610 TCCGCTGACTCGTCTATGATT 58.701 47.619 0.00 0.00 0.00 2.57
94 95 2.033424 TCCGCTGACTCGTCTATGATTG 59.967 50.000 0.00 0.00 0.00 2.67
95 96 2.033424 CCGCTGACTCGTCTATGATTGA 59.967 50.000 0.00 0.00 0.00 2.57
96 97 3.295785 CGCTGACTCGTCTATGATTGAG 58.704 50.000 0.00 0.00 34.65 3.02
97 98 3.049206 GCTGACTCGTCTATGATTGAGC 58.951 50.000 0.00 0.00 31.64 4.26
98 99 3.243367 GCTGACTCGTCTATGATTGAGCT 60.243 47.826 0.00 0.00 31.64 4.09
99 100 4.536065 CTGACTCGTCTATGATTGAGCTC 58.464 47.826 6.82 6.82 31.64 4.09
100 101 4.203226 TGACTCGTCTATGATTGAGCTCT 58.797 43.478 16.19 0.00 31.64 4.09
101 102 4.642437 TGACTCGTCTATGATTGAGCTCTT 59.358 41.667 16.19 1.95 31.64 2.85
102 103 4.930963 ACTCGTCTATGATTGAGCTCTTG 58.069 43.478 16.19 0.00 31.64 3.02
103 104 4.400884 ACTCGTCTATGATTGAGCTCTTGT 59.599 41.667 16.19 0.10 31.64 3.16
104 105 5.590663 ACTCGTCTATGATTGAGCTCTTGTA 59.409 40.000 16.19 0.00 31.64 2.41
105 106 6.264292 ACTCGTCTATGATTGAGCTCTTGTAT 59.736 38.462 16.19 7.24 31.64 2.29
106 107 7.043961 TCGTCTATGATTGAGCTCTTGTATT 57.956 36.000 16.19 0.00 0.00 1.89
107 108 7.142021 TCGTCTATGATTGAGCTCTTGTATTC 58.858 38.462 16.19 1.27 0.00 1.75
108 109 6.087423 CGTCTATGATTGAGCTCTTGTATTCG 59.913 42.308 16.19 6.14 0.00 3.34
109 110 7.142021 GTCTATGATTGAGCTCTTGTATTCGA 58.858 38.462 16.19 0.24 0.00 3.71
110 111 7.325821 GTCTATGATTGAGCTCTTGTATTCGAG 59.674 40.741 16.19 1.96 0.00 4.04
115 116 1.859383 GCTCTTGTATTCGAGCCCTC 58.141 55.000 0.00 0.00 45.21 4.30
138 139 2.656947 GCCCCTGGCTTGTAATATGA 57.343 50.000 0.00 0.00 46.69 2.15
139 140 3.160679 GCCCCTGGCTTGTAATATGAT 57.839 47.619 0.00 0.00 46.69 2.45
140 141 2.821969 GCCCCTGGCTTGTAATATGATG 59.178 50.000 0.00 0.00 46.69 3.07
141 142 2.821969 CCCCTGGCTTGTAATATGATGC 59.178 50.000 0.00 0.00 0.00 3.91
142 143 3.499202 CCCCTGGCTTGTAATATGATGCT 60.499 47.826 0.00 0.00 0.00 3.79
143 144 4.147321 CCCTGGCTTGTAATATGATGCTT 58.853 43.478 0.00 0.00 0.00 3.91
144 145 4.022589 CCCTGGCTTGTAATATGATGCTTG 60.023 45.833 0.00 0.00 0.00 4.01
145 146 4.581824 CCTGGCTTGTAATATGATGCTTGT 59.418 41.667 0.00 0.00 0.00 3.16
146 147 5.764686 CCTGGCTTGTAATATGATGCTTGTA 59.235 40.000 0.00 0.00 0.00 2.41
147 148 6.432162 CCTGGCTTGTAATATGATGCTTGTAT 59.568 38.462 0.00 0.00 0.00 2.29
148 149 7.205737 TGGCTTGTAATATGATGCTTGTATG 57.794 36.000 0.00 0.00 0.00 2.39
149 150 6.997476 TGGCTTGTAATATGATGCTTGTATGA 59.003 34.615 0.00 0.00 0.00 2.15
150 151 7.041167 TGGCTTGTAATATGATGCTTGTATGAC 60.041 37.037 0.00 0.00 0.00 3.06
151 152 7.173907 GGCTTGTAATATGATGCTTGTATGACT 59.826 37.037 0.00 0.00 0.00 3.41
152 153 8.562892 GCTTGTAATATGATGCTTGTATGACTT 58.437 33.333 0.00 0.00 0.00 3.01
184 185 8.902540 TTTGTAGAGTTGTGTTGTGATATCTT 57.097 30.769 3.98 0.00 0.00 2.40
185 186 8.902540 TTGTAGAGTTGTGTTGTGATATCTTT 57.097 30.769 3.98 0.00 0.00 2.52
186 187 8.534333 TGTAGAGTTGTGTTGTGATATCTTTC 57.466 34.615 3.98 0.00 0.00 2.62
187 188 7.602644 TGTAGAGTTGTGTTGTGATATCTTTCC 59.397 37.037 3.98 0.00 0.00 3.13
188 189 5.639506 AGAGTTGTGTTGTGATATCTTTCCG 59.360 40.000 3.98 0.00 0.00 4.30
189 190 5.305585 AGTTGTGTTGTGATATCTTTCCGT 58.694 37.500 3.98 0.00 0.00 4.69
190 191 5.179368 AGTTGTGTTGTGATATCTTTCCGTG 59.821 40.000 3.98 0.00 0.00 4.94
191 192 4.888917 TGTGTTGTGATATCTTTCCGTGA 58.111 39.130 3.98 0.00 0.00 4.35
192 193 4.929211 TGTGTTGTGATATCTTTCCGTGAG 59.071 41.667 3.98 0.00 0.00 3.51
193 194 4.929808 GTGTTGTGATATCTTTCCGTGAGT 59.070 41.667 3.98 0.00 0.00 3.41
194 195 5.062308 GTGTTGTGATATCTTTCCGTGAGTC 59.938 44.000 3.98 0.00 0.00 3.36
195 196 4.386867 TGTGATATCTTTCCGTGAGTCC 57.613 45.455 3.98 0.00 0.00 3.85
196 197 3.132289 TGTGATATCTTTCCGTGAGTCCC 59.868 47.826 3.98 0.00 0.00 4.46
197 198 3.385111 GTGATATCTTTCCGTGAGTCCCT 59.615 47.826 3.98 0.00 0.00 4.20
198 199 3.384789 TGATATCTTTCCGTGAGTCCCTG 59.615 47.826 3.98 0.00 0.00 4.45
199 200 1.938585 ATCTTTCCGTGAGTCCCTGA 58.061 50.000 0.00 0.00 0.00 3.86
200 201 1.938585 TCTTTCCGTGAGTCCCTGAT 58.061 50.000 0.00 0.00 0.00 2.90
201 202 1.825474 TCTTTCCGTGAGTCCCTGATC 59.175 52.381 0.00 0.00 0.00 2.92
202 203 1.827969 CTTTCCGTGAGTCCCTGATCT 59.172 52.381 0.00 0.00 0.00 2.75
203 204 1.938585 TTCCGTGAGTCCCTGATCTT 58.061 50.000 0.00 0.00 0.00 2.40
204 205 1.186200 TCCGTGAGTCCCTGATCTTG 58.814 55.000 0.00 0.00 0.00 3.02
205 206 1.186200 CCGTGAGTCCCTGATCTTGA 58.814 55.000 0.00 0.00 0.00 3.02
206 207 1.759445 CCGTGAGTCCCTGATCTTGAT 59.241 52.381 0.00 0.00 0.00 2.57
207 208 2.223923 CCGTGAGTCCCTGATCTTGATC 60.224 54.545 3.82 3.82 0.00 2.92
208 209 2.542618 CGTGAGTCCCTGATCTTGATCG 60.543 54.545 6.19 2.03 0.00 3.69
209 210 2.428890 GTGAGTCCCTGATCTTGATCGT 59.571 50.000 6.19 0.00 0.00 3.73
210 211 3.632604 GTGAGTCCCTGATCTTGATCGTA 59.367 47.826 6.19 0.00 0.00 3.43
211 212 3.632604 TGAGTCCCTGATCTTGATCGTAC 59.367 47.826 6.19 2.53 0.00 3.67
212 213 3.632333 AGTCCCTGATCTTGATCGTACA 58.368 45.455 6.19 0.00 0.00 2.90
213 214 3.381908 AGTCCCTGATCTTGATCGTACAC 59.618 47.826 6.19 1.73 0.00 2.90
214 215 3.130516 GTCCCTGATCTTGATCGTACACA 59.869 47.826 6.19 0.00 0.00 3.72
215 216 3.960755 TCCCTGATCTTGATCGTACACAT 59.039 43.478 6.19 0.00 0.00 3.21
216 217 4.405680 TCCCTGATCTTGATCGTACACATT 59.594 41.667 6.19 0.00 0.00 2.71
217 218 5.104941 TCCCTGATCTTGATCGTACACATTT 60.105 40.000 6.19 0.00 0.00 2.32
218 219 5.007039 CCCTGATCTTGATCGTACACATTTG 59.993 44.000 6.19 0.00 0.00 2.32
219 220 5.469373 TGATCTTGATCGTACACATTTGC 57.531 39.130 6.19 0.00 0.00 3.68
220 221 3.989705 TCTTGATCGTACACATTTGCG 57.010 42.857 0.00 0.00 0.00 4.85
221 222 3.322369 TCTTGATCGTACACATTTGCGT 58.678 40.909 0.00 0.00 0.00 5.24
222 223 3.122780 TCTTGATCGTACACATTTGCGTG 59.877 43.478 0.00 0.00 42.81 5.34
234 235 5.868257 CACATTTGCGTGTATGATTAGTGT 58.132 37.500 0.00 0.00 32.00 3.55
235 236 6.999456 CACATTTGCGTGTATGATTAGTGTA 58.001 36.000 0.00 0.00 32.00 2.90
236 237 7.630026 CACATTTGCGTGTATGATTAGTGTAT 58.370 34.615 0.00 0.00 32.00 2.29
237 238 7.583762 CACATTTGCGTGTATGATTAGTGTATG 59.416 37.037 0.00 0.00 32.00 2.39
238 239 7.494298 ACATTTGCGTGTATGATTAGTGTATGA 59.506 33.333 0.00 0.00 0.00 2.15
239 240 8.498358 CATTTGCGTGTATGATTAGTGTATGAT 58.502 33.333 0.00 0.00 0.00 2.45
240 241 8.432110 TTTGCGTGTATGATTAGTGTATGATT 57.568 30.769 0.00 0.00 0.00 2.57
241 242 7.406799 TGCGTGTATGATTAGTGTATGATTG 57.593 36.000 0.00 0.00 0.00 2.67
242 243 7.206687 TGCGTGTATGATTAGTGTATGATTGA 58.793 34.615 0.00 0.00 0.00 2.57
243 244 7.708752 TGCGTGTATGATTAGTGTATGATTGAA 59.291 33.333 0.00 0.00 0.00 2.69
244 245 8.712363 GCGTGTATGATTAGTGTATGATTGAAT 58.288 33.333 0.00 0.00 0.00 2.57
247 248 9.423061 TGTATGATTAGTGTATGATTGAATCGG 57.577 33.333 0.18 0.00 0.00 4.18
248 249 7.912056 ATGATTAGTGTATGATTGAATCGGG 57.088 36.000 0.18 0.00 0.00 5.14
249 250 6.230472 TGATTAGTGTATGATTGAATCGGGG 58.770 40.000 0.18 0.00 0.00 5.73
250 251 3.492102 AGTGTATGATTGAATCGGGGG 57.508 47.619 0.18 0.00 0.00 5.40
251 252 1.880027 GTGTATGATTGAATCGGGGGC 59.120 52.381 0.18 0.00 0.00 5.80
252 253 1.156736 GTATGATTGAATCGGGGGCG 58.843 55.000 0.18 0.00 0.00 6.13
253 254 0.762418 TATGATTGAATCGGGGGCGT 59.238 50.000 0.18 0.00 0.00 5.68
254 255 0.535102 ATGATTGAATCGGGGGCGTC 60.535 55.000 0.18 0.00 0.00 5.19
255 256 1.153249 GATTGAATCGGGGGCGTCA 60.153 57.895 0.00 0.00 0.00 4.35
256 257 1.436983 GATTGAATCGGGGGCGTCAC 61.437 60.000 0.00 0.00 0.00 3.67
257 258 2.191786 ATTGAATCGGGGGCGTCACA 62.192 55.000 0.00 0.00 0.00 3.58
270 271 3.390135 GGCGTCACAGCTATGCTAAATA 58.610 45.455 0.00 0.00 36.40 1.40
271 272 3.430218 GGCGTCACAGCTATGCTAAATAG 59.570 47.826 0.00 0.00 36.40 1.73
272 273 6.131607 GGCGTCACAGCTATGCTAAATAGC 62.132 50.000 8.91 8.91 45.38 2.97
304 305 8.064336 ACTCGGTTCAAATAGTTATAGTCTGT 57.936 34.615 0.00 0.00 0.00 3.41
433 436 1.593196 GCACACTGCTCAAACCACTA 58.407 50.000 0.00 0.00 40.96 2.74
437 440 3.935203 CACACTGCTCAAACCACTATAGG 59.065 47.826 4.43 0.00 0.00 2.57
439 442 3.055094 CACTGCTCAAACCACTATAGGGT 60.055 47.826 4.43 5.93 41.41 4.34
463 469 7.985752 GGTGACTATAGTTGTAGCTGGTTATTT 59.014 37.037 6.88 0.00 0.00 1.40
496 502 9.638239 TTGAGTTTATTTGCATTCCTATTCAAC 57.362 29.630 0.00 0.00 0.00 3.18
499 505 8.034804 AGTTTATTTGCATTCCTATTCAACACC 58.965 33.333 0.00 0.00 0.00 4.16
506 512 6.040729 TGCATTCCTATTCAACACCCATAATG 59.959 38.462 0.00 0.00 0.00 1.90
553 560 4.326504 AATCCCTTGTCTTGCTTGTTTG 57.673 40.909 0.00 0.00 0.00 2.93
569 576 8.942338 TGCTTGTTTGTATCCATACTTAGTAG 57.058 34.615 0.00 0.00 34.41 2.57
570 577 8.537016 TGCTTGTTTGTATCCATACTTAGTAGT 58.463 33.333 0.00 0.00 38.44 2.73
592 599 8.969267 GTAGTATAAACATGTGAGGATTTCTCG 58.031 37.037 0.00 0.00 45.32 4.04
593 600 6.986817 AGTATAAACATGTGAGGATTTCTCGG 59.013 38.462 0.00 0.00 45.32 4.63
594 601 3.703001 AACATGTGAGGATTTCTCGGT 57.297 42.857 0.00 0.00 45.32 4.69
595 602 2.977914 ACATGTGAGGATTTCTCGGTG 58.022 47.619 0.00 0.00 45.32 4.94
596 603 2.567169 ACATGTGAGGATTTCTCGGTGA 59.433 45.455 0.00 0.00 45.32 4.02
597 604 3.198635 ACATGTGAGGATTTCTCGGTGAT 59.801 43.478 0.00 0.00 45.32 3.06
598 605 3.981071 TGTGAGGATTTCTCGGTGATT 57.019 42.857 0.00 0.00 45.32 2.57
599 606 5.104941 ACATGTGAGGATTTCTCGGTGATTA 60.105 40.000 0.00 0.00 45.32 1.75
600 607 5.614324 TGTGAGGATTTCTCGGTGATTAT 57.386 39.130 0.00 0.00 45.32 1.28
601 608 5.989477 TGTGAGGATTTCTCGGTGATTATT 58.011 37.500 0.00 0.00 45.32 1.40
602 609 6.414732 TGTGAGGATTTCTCGGTGATTATTT 58.585 36.000 0.00 0.00 45.32 1.40
603 610 6.884295 TGTGAGGATTTCTCGGTGATTATTTT 59.116 34.615 0.00 0.00 45.32 1.82
604 611 8.044309 TGTGAGGATTTCTCGGTGATTATTTTA 58.956 33.333 0.00 0.00 45.32 1.52
625 632 6.791867 TTATCAGTCTAGCTACATGTTGGT 57.208 37.500 15.90 15.90 0.00 3.67
627 634 4.086457 TCAGTCTAGCTACATGTTGGTCA 58.914 43.478 15.12 1.51 0.00 4.02
628 635 4.526650 TCAGTCTAGCTACATGTTGGTCAA 59.473 41.667 15.12 2.84 0.00 3.18
633 640 6.371548 GTCTAGCTACATGTTGGTCAATTGAA 59.628 38.462 15.12 0.00 0.00 2.69
637 644 7.444299 AGCTACATGTTGGTCAATTGAATTTT 58.556 30.769 10.35 0.00 0.00 1.82
665 672 4.393680 TCGGGGTTAGTCGATTTTTGAATG 59.606 41.667 0.00 0.00 0.00 2.67
666 673 4.393680 CGGGGTTAGTCGATTTTTGAATGA 59.606 41.667 0.00 0.00 0.00 2.57
667 674 5.106475 CGGGGTTAGTCGATTTTTGAATGAA 60.106 40.000 0.00 0.00 0.00 2.57
668 675 6.322491 GGGGTTAGTCGATTTTTGAATGAAG 58.678 40.000 0.00 0.00 0.00 3.02
669 676 6.322491 GGGTTAGTCGATTTTTGAATGAAGG 58.678 40.000 0.00 0.00 0.00 3.46
670 677 6.150474 GGGTTAGTCGATTTTTGAATGAAGGA 59.850 38.462 0.00 0.00 0.00 3.36
671 678 7.308951 GGGTTAGTCGATTTTTGAATGAAGGAA 60.309 37.037 0.00 0.00 0.00 3.36
672 679 7.750903 GGTTAGTCGATTTTTGAATGAAGGAAG 59.249 37.037 0.00 0.00 0.00 3.46
673 680 6.259550 AGTCGATTTTTGAATGAAGGAAGG 57.740 37.500 0.00 0.00 0.00 3.46
674 681 6.003950 AGTCGATTTTTGAATGAAGGAAGGA 58.996 36.000 0.00 0.00 0.00 3.36
675 682 6.150140 AGTCGATTTTTGAATGAAGGAAGGAG 59.850 38.462 0.00 0.00 0.00 3.69
676 683 6.149474 GTCGATTTTTGAATGAAGGAAGGAGA 59.851 38.462 0.00 0.00 0.00 3.71
677 684 6.714810 TCGATTTTTGAATGAAGGAAGGAGAA 59.285 34.615 0.00 0.00 0.00 2.87
678 685 7.025963 CGATTTTTGAATGAAGGAAGGAGAAG 58.974 38.462 0.00 0.00 0.00 2.85
679 686 6.655078 TTTTTGAATGAAGGAAGGAGAAGG 57.345 37.500 0.00 0.00 0.00 3.46
680 687 4.307032 TTGAATGAAGGAAGGAGAAGGG 57.693 45.455 0.00 0.00 0.00 3.95
681 688 2.025887 TGAATGAAGGAAGGAGAAGGGC 60.026 50.000 0.00 0.00 0.00 5.19
682 689 0.922626 ATGAAGGAAGGAGAAGGGCC 59.077 55.000 0.00 0.00 0.00 5.80
683 690 0.178861 TGAAGGAAGGAGAAGGGCCT 60.179 55.000 0.00 0.00 37.35 5.19
684 691 0.544223 GAAGGAAGGAGAAGGGCCTC 59.456 60.000 6.46 0.00 33.76 4.70
685 692 1.268283 AAGGAAGGAGAAGGGCCTCG 61.268 60.000 6.46 0.00 33.76 4.63
686 693 2.188207 GAAGGAGAAGGGCCTCGC 59.812 66.667 6.46 1.59 33.76 5.03
708 715 1.681486 GAGAGAAGGAAGGGGCTCGG 61.681 65.000 0.00 0.00 32.80 4.63
727 736 1.523758 GCGTCATCACCCCATTATCC 58.476 55.000 0.00 0.00 0.00 2.59
731 740 3.690460 GTCATCACCCCATTATCCATCC 58.310 50.000 0.00 0.00 0.00 3.51
736 745 2.025887 CACCCCATTATCCATCCTAGGC 60.026 54.545 2.96 0.00 0.00 3.93
739 748 3.334881 CCCCATTATCCATCCTAGGCTTT 59.665 47.826 2.96 0.00 0.00 3.51
749 758 1.583611 TCCTAGGCTTTAGGATGGGGA 59.416 52.381 2.96 0.00 38.71 4.81
792 824 0.686789 AAAAACTCAATGCAGGGGGC 59.313 50.000 0.00 0.00 45.13 5.80
821 939 2.516225 GTGGGATGTTAGGCCGGC 60.516 66.667 21.18 21.18 0.00 6.13
829 947 2.123769 TTAGGCCGGCGGTAGCTA 60.124 61.111 28.82 12.96 44.37 3.32
868 990 1.545651 CGGGAGGTTGAAGAAAGGCTT 60.546 52.381 0.00 0.00 40.25 4.35
889 1011 1.376609 GGGCCGTTGATTTCGCATCT 61.377 55.000 0.00 0.00 0.00 2.90
890 1012 1.295792 GGCCGTTGATTTCGCATCTA 58.704 50.000 0.00 0.00 0.00 1.98
905 1027 5.639757 TCGCATCTAATGGTTCACAAAATG 58.360 37.500 0.00 0.00 0.00 2.32
911 1033 6.303054 TCTAATGGTTCACAAAATGGACTGA 58.697 36.000 0.00 0.00 36.95 3.41
912 1034 6.947733 TCTAATGGTTCACAAAATGGACTGAT 59.052 34.615 0.00 0.00 36.95 2.90
914 1036 3.826157 TGGTTCACAAAATGGACTGATCC 59.174 43.478 0.00 0.00 46.48 3.36
917 1039 5.355350 GGTTCACAAAATGGACTGATCCTAG 59.645 44.000 0.00 0.00 46.43 3.02
921 1043 7.004086 TCACAAAATGGACTGATCCTAGTTTT 58.996 34.615 0.00 0.00 46.43 2.43
1100 1278 2.765807 ACGCCCTGATCTCCCTGG 60.766 66.667 0.00 0.00 0.00 4.45
1102 1280 2.771762 GCCCTGATCTCCCTGGCT 60.772 66.667 0.00 0.00 39.05 4.75
1136 1314 0.179134 CAACATCCTCGTCCGTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
1468 1646 4.154347 CGGCTCACCTCCCTCAGC 62.154 72.222 0.00 0.00 0.00 4.26
1474 1652 0.178891 TCACCTCCCTCAGCCTCTTT 60.179 55.000 0.00 0.00 0.00 2.52
1507 1687 3.782443 CTCCTACCCGCGGGCTTT 61.782 66.667 43.58 27.30 39.32 3.51
1534 1714 2.710096 TCCCGGAGCTAAGGAAATTG 57.290 50.000 0.73 0.00 0.00 2.32
1537 1717 2.289565 CCGGAGCTAAGGAAATTGACC 58.710 52.381 0.00 0.00 0.00 4.02
1576 1757 2.178106 AGAGGACTATGGGGAGTACCAG 59.822 54.545 0.00 0.00 45.20 4.00
1696 1877 1.004044 CCCAATCTCAGGCACTTGACT 59.996 52.381 0.00 0.00 34.60 3.41
1753 1934 3.009916 AGGACTTGACATGCCTGAATTCT 59.990 43.478 7.05 0.00 0.00 2.40
1787 1968 4.790765 TGGTTTGACAATGTTGTTCACA 57.209 36.364 0.00 0.00 42.43 3.58
1944 2125 6.052405 TCCGAAACTAGTTAAAATGCCCTA 57.948 37.500 8.92 0.00 0.00 3.53
1945 2126 6.655930 TCCGAAACTAGTTAAAATGCCCTAT 58.344 36.000 8.92 0.00 0.00 2.57
1996 2180 9.778741 TTCTCTTTAATCTGTCTGAAAAGCTAA 57.221 29.630 0.00 0.00 0.00 3.09
2003 2187 2.154462 GTCTGAAAAGCTAAGCTGCCA 58.846 47.619 0.00 0.00 39.62 4.92
2330 2516 9.722056 GCTGTGACCAATCTACTAATTAATTTG 57.278 33.333 5.91 7.05 0.00 2.32
2357 2543 4.277515 GGTTATATACCCCCTCCGTTTC 57.722 50.000 0.00 0.00 41.43 2.78
2358 2544 3.906218 GGTTATATACCCCCTCCGTTTCT 59.094 47.826 0.00 0.00 41.43 2.52
2359 2545 4.349048 GGTTATATACCCCCTCCGTTTCTT 59.651 45.833 0.00 0.00 41.43 2.52
2360 2546 5.163163 GGTTATATACCCCCTCCGTTTCTTT 60.163 44.000 0.00 0.00 41.43 2.52
2361 2547 6.359804 GTTATATACCCCCTCCGTTTCTTTT 58.640 40.000 0.00 0.00 0.00 2.27
2362 2548 3.820195 ATACCCCCTCCGTTTCTTTTT 57.180 42.857 0.00 0.00 0.00 1.94
2363 2549 4.932911 ATACCCCCTCCGTTTCTTTTTA 57.067 40.909 0.00 0.00 0.00 1.52
2364 2550 3.150458 ACCCCCTCCGTTTCTTTTTAG 57.850 47.619 0.00 0.00 0.00 1.85
2365 2551 2.444388 ACCCCCTCCGTTTCTTTTTAGT 59.556 45.455 0.00 0.00 0.00 2.24
2366 2552 3.079578 CCCCCTCCGTTTCTTTTTAGTC 58.920 50.000 0.00 0.00 0.00 2.59
2367 2553 3.244805 CCCCCTCCGTTTCTTTTTAGTCT 60.245 47.826 0.00 0.00 0.00 3.24
2368 2554 3.751698 CCCCTCCGTTTCTTTTTAGTCTG 59.248 47.826 0.00 0.00 0.00 3.51
2369 2555 3.188667 CCCTCCGTTTCTTTTTAGTCTGC 59.811 47.826 0.00 0.00 0.00 4.26
2370 2556 3.813166 CCTCCGTTTCTTTTTAGTCTGCA 59.187 43.478 0.00 0.00 0.00 4.41
2371 2557 4.455877 CCTCCGTTTCTTTTTAGTCTGCAT 59.544 41.667 0.00 0.00 0.00 3.96
2372 2558 5.642063 CCTCCGTTTCTTTTTAGTCTGCATA 59.358 40.000 0.00 0.00 0.00 3.14
2373 2559 6.316390 CCTCCGTTTCTTTTTAGTCTGCATAT 59.684 38.462 0.00 0.00 0.00 1.78
2374 2560 7.494625 CCTCCGTTTCTTTTTAGTCTGCATATA 59.505 37.037 0.00 0.00 0.00 0.86
2375 2561 8.780846 TCCGTTTCTTTTTAGTCTGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
2376 2562 8.879759 TCCGTTTCTTTTTAGTCTGCATATAAG 58.120 33.333 0.00 0.00 0.00 1.73
2377 2563 8.879759 CCGTTTCTTTTTAGTCTGCATATAAGA 58.120 33.333 0.00 0.00 0.00 2.10
2577 2763 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
2578 2764 7.936496 TGACTTTGACCAAATCTTATATGCA 57.064 32.000 0.00 0.00 0.00 3.96
2579 2765 7.988737 TGACTTTGACCAAATCTTATATGCAG 58.011 34.615 0.00 0.00 0.00 4.41
2580 2766 7.828717 TGACTTTGACCAAATCTTATATGCAGA 59.171 33.333 0.00 0.00 0.00 4.26
2581 2767 7.989826 ACTTTGACCAAATCTTATATGCAGAC 58.010 34.615 0.00 0.00 0.00 3.51
2582 2768 7.831193 ACTTTGACCAAATCTTATATGCAGACT 59.169 33.333 0.00 0.00 0.00 3.24
2583 2769 9.330063 CTTTGACCAAATCTTATATGCAGACTA 57.670 33.333 0.00 0.00 0.00 2.59
2584 2770 9.679661 TTTGACCAAATCTTATATGCAGACTAA 57.320 29.630 0.00 0.00 0.00 2.24
2585 2771 9.679661 TTGACCAAATCTTATATGCAGACTAAA 57.320 29.630 0.00 0.00 0.00 1.85
2586 2772 9.679661 TGACCAAATCTTATATGCAGACTAAAA 57.320 29.630 0.00 0.00 0.00 1.52
2594 2780 8.879759 TCTTATATGCAGACTAAAAAGAAACGG 58.120 33.333 0.00 0.00 0.00 4.44
2595 2781 8.780846 TTATATGCAGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
2596 2782 5.613358 ATGCAGACTAAAAAGAAACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
2597 2783 3.813166 TGCAGACTAAAAAGAAACGGAGG 59.187 43.478 0.00 0.00 0.00 4.30
2598 2784 3.188667 GCAGACTAAAAAGAAACGGAGGG 59.811 47.826 0.00 0.00 0.00 4.30
2599 2785 4.638304 CAGACTAAAAAGAAACGGAGGGA 58.362 43.478 0.00 0.00 0.00 4.20
2600 2786 4.691216 CAGACTAAAAAGAAACGGAGGGAG 59.309 45.833 0.00 0.00 0.00 4.30
2601 2787 4.347292 AGACTAAAAAGAAACGGAGGGAGT 59.653 41.667 0.00 0.00 0.00 3.85
2602 2788 5.541484 AGACTAAAAAGAAACGGAGGGAGTA 59.459 40.000 0.00 0.00 0.00 2.59
2603 2789 5.545588 ACTAAAAAGAAACGGAGGGAGTAC 58.454 41.667 0.00 0.00 0.00 2.73
2604 2790 4.701651 AAAAAGAAACGGAGGGAGTACT 57.298 40.909 0.00 0.00 0.00 2.73
2605 2791 4.701651 AAAAGAAACGGAGGGAGTACTT 57.298 40.909 0.00 0.00 0.00 2.24
2606 2792 5.813513 AAAAGAAACGGAGGGAGTACTTA 57.186 39.130 0.00 0.00 0.00 2.24
2607 2793 5.813513 AAAGAAACGGAGGGAGTACTTAA 57.186 39.130 0.00 0.00 0.00 1.85
2748 2934 9.034800 AGGCTGATGTATATTTTTCCTTTTTCA 57.965 29.630 0.00 0.00 0.00 2.69
2895 3081 5.045286 AGAGATGCATCCAGTTTAAGTCCTT 60.045 40.000 23.06 0.00 0.00 3.36
2910 3096 9.708092 GTTTAAGTCCTTATATTATCCTCGCTT 57.292 33.333 0.00 0.00 0.00 4.68
3080 3266 9.645059 AAATCTTGAAAAGCTTAAAATAGAGGC 57.355 29.630 0.00 0.00 45.70 4.70
3100 3286 8.804912 AGAGGCAATCCTGATTTATGAATATC 57.195 34.615 0.00 0.00 44.46 1.63
3144 3331 6.352516 ACATTGTTTAAAGGTCATTTTGGCA 58.647 32.000 0.00 0.00 32.01 4.92
3158 3345 7.375053 GTCATTTTGGCACTTCAGGTTAATTA 58.625 34.615 0.00 0.00 0.00 1.40
3284 3471 2.551721 CCTTCAGGTTGTGCAGATGACT 60.552 50.000 0.00 0.00 0.00 3.41
3361 3548 3.688272 CAAGGCTTCTTCGTGCATTATG 58.312 45.455 0.00 0.00 31.83 1.90
3475 3662 9.964354 GGTCTTATTTAAAGGTAGGGAAACTTA 57.036 33.333 0.00 0.00 0.00 2.24
3691 3878 1.231221 AATTGGTGTTGTTCGCGCTA 58.769 45.000 5.56 0.00 0.00 4.26
3713 3900 2.163818 TTAGTTTGGTCAGTGCCTCG 57.836 50.000 5.39 0.00 0.00 4.63
3835 4048 5.964887 TTTCATTGAAAACTGAAAAGCCG 57.035 34.783 9.36 0.00 38.17 5.52
3863 4076 3.495331 TCCAAGCAGCTTAAACCATTGA 58.505 40.909 7.52 0.00 0.00 2.57
3870 4083 5.244626 AGCAGCTTAAACCATTGAATTCTGT 59.755 36.000 7.05 0.00 0.00 3.41
3891 4104 6.256539 TCTGTATCTTGCTTAAGCGAAATCTG 59.743 38.462 21.97 8.56 45.83 2.90
3911 4124 5.737860 TCTGTGTGATTGACTTAGATGCAT 58.262 37.500 0.00 0.00 0.00 3.96
3945 4158 6.148480 GCGTAATGCATCTGATATTTTCCTCT 59.852 38.462 0.00 0.00 45.45 3.69
3958 4171 1.866483 TTCCTCTGGGCCATGCATGT 61.866 55.000 24.58 0.00 0.00 3.21
3977 4190 7.432869 TGCATGTGTCTGCTAAAATTTTAAGT 58.567 30.769 11.62 0.00 42.75 2.24
4069 4282 9.807649 CCTTTATTTTGATAAGCTGCATAAAGT 57.192 29.630 16.69 6.04 33.63 2.66
4078 4291 3.221771 AGCTGCATAAAGTGTGTTTCCA 58.778 40.909 1.02 0.00 0.00 3.53
4081 4294 4.990426 GCTGCATAAAGTGTGTTTCCATTT 59.010 37.500 0.00 0.00 0.00 2.32
4147 4360 2.202987 GGCATCGCTGGAGAGGTG 60.203 66.667 0.00 0.00 0.00 4.00
4148 4361 2.581354 GCATCGCTGGAGAGGTGT 59.419 61.111 0.00 0.00 0.00 4.16
4221 4436 2.424601 GCAACATGCAGAGAATGGCTTA 59.575 45.455 0.00 0.00 44.26 3.09
4244 4459 6.884280 ATCAAAAGGAACCAGTTCTGTTAG 57.116 37.500 10.19 0.00 39.45 2.34
4245 4460 5.996644 TCAAAAGGAACCAGTTCTGTTAGA 58.003 37.500 10.19 2.03 39.45 2.10
4246 4461 6.055588 TCAAAAGGAACCAGTTCTGTTAGAG 58.944 40.000 10.19 1.13 39.45 2.43
4247 4462 5.632034 AAAGGAACCAGTTCTGTTAGAGT 57.368 39.130 10.19 0.00 39.45 3.24
4248 4463 6.742559 AAAGGAACCAGTTCTGTTAGAGTA 57.257 37.500 10.19 0.00 39.45 2.59
4249 4464 6.936968 AAGGAACCAGTTCTGTTAGAGTAT 57.063 37.500 10.19 0.00 39.45 2.12
4255 4470 7.184067 ACCAGTTCTGTTAGAGTATAAAGGG 57.816 40.000 0.00 0.00 0.00 3.95
4300 4515 9.651913 TTTGTTCTTTTCTGAAATATATTGGCC 57.348 29.630 3.31 0.00 0.00 5.36
4302 4517 9.693739 TGTTCTTTTCTGAAATATATTGGCCTA 57.306 29.630 3.32 0.00 0.00 3.93
4315 4530 1.523938 GGCCTACCATCGGTGCTTC 60.524 63.158 0.00 0.00 36.19 3.86
4316 4531 1.883084 GCCTACCATCGGTGCTTCG 60.883 63.158 0.00 0.00 36.19 3.79
4383 4599 7.957002 AGCACTCTAGTTAGTAGTATACCGTA 58.043 38.462 0.00 0.00 44.47 4.02
4415 4632 1.508632 CTTCGAACATGGGTCGTGTT 58.491 50.000 17.37 5.32 44.87 3.32
4420 4637 1.600485 GAACATGGGTCGTGTTTCGTT 59.400 47.619 6.90 0.00 42.66 3.85
4428 4645 3.426560 GGGTCGTGTTTCGTTTGACTTTT 60.427 43.478 0.00 0.00 40.80 2.27
4449 4666 1.131883 CAGGCCTCTGAAAATGAAGCG 59.868 52.381 0.00 0.00 43.49 4.68
4520 4740 2.621929 GCTGGAGAGTCTGAGGGAGTTA 60.622 54.545 0.00 0.00 0.00 2.24
4584 4811 5.633601 GCTAGCAAAACATAAAGGTTGTTCC 59.366 40.000 10.63 0.00 36.32 3.62
4630 4859 1.062525 GCTCTGCCGCCGTTATTTG 59.937 57.895 0.00 0.00 0.00 2.32
4723 4981 6.349300 CCAGGTACTAACATTTGCTGAGTAT 58.651 40.000 0.00 0.00 36.02 2.12
4750 5008 3.642848 AGAAACATTTGCTGATTGGGTGT 59.357 39.130 0.00 0.00 0.00 4.16
4784 5042 4.574674 AGAATCAAACTATCAGGGCACA 57.425 40.909 0.00 0.00 0.00 4.57
4798 5056 1.067846 GGGCACAAATTTCCTCGAACC 60.068 52.381 0.00 0.00 0.00 3.62
4860 5118 4.439449 CGAGATGAGAAATAGCTCAACGTC 59.561 45.833 0.00 0.00 46.94 4.34
4866 5124 6.223852 TGAGAAATAGCTCAACGTCTCTTTT 58.776 36.000 0.00 0.00 41.65 2.27
4867 5125 7.375834 TGAGAAATAGCTCAACGTCTCTTTTA 58.624 34.615 0.00 0.00 41.65 1.52
4875 5133 4.377021 TCAACGTCTCTTTTATGTGCACT 58.623 39.130 19.41 6.22 0.00 4.40
4991 5250 5.970501 TCCCTTTAAATTACTCCCTCCTC 57.029 43.478 0.00 0.00 0.00 3.71
5033 5292 7.704472 TGTCAACTTATTTTGCATTTCGACTTT 59.296 29.630 0.00 0.00 0.00 2.66
5073 5332 4.932146 ACAAAACACAACTAATGCTCCAC 58.068 39.130 0.00 0.00 0.00 4.02
5094 5353 6.943718 TCCACGAAAACTATACCCTTGAATTT 59.056 34.615 0.00 0.00 0.00 1.82
5098 5357 8.724229 ACGAAAACTATACCCTTGAATTTGTAC 58.276 33.333 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.355716 GGCTAGCACAAACTGGGATACA 60.356 50.000 18.24 0.00 39.74 2.29
2 3 2.092914 AGGCTAGCACAAACTGGGATAC 60.093 50.000 18.24 0.00 0.00 2.24
3 4 2.196595 AGGCTAGCACAAACTGGGATA 58.803 47.619 18.24 0.00 0.00 2.59
4 5 0.995024 AGGCTAGCACAAACTGGGAT 59.005 50.000 18.24 0.00 0.00 3.85
5 6 0.771127 AAGGCTAGCACAAACTGGGA 59.229 50.000 18.24 0.00 0.00 4.37
6 7 1.168714 GAAGGCTAGCACAAACTGGG 58.831 55.000 18.24 0.00 0.00 4.45
7 8 2.191128 AGAAGGCTAGCACAAACTGG 57.809 50.000 18.24 0.00 0.00 4.00
8 9 4.154918 CCTTAAGAAGGCTAGCACAAACTG 59.845 45.833 18.24 0.00 42.78 3.16
9 10 4.327680 CCTTAAGAAGGCTAGCACAAACT 58.672 43.478 18.24 0.14 42.78 2.66
10 11 4.686839 CCTTAAGAAGGCTAGCACAAAC 57.313 45.455 18.24 0.00 42.78 2.93
21 22 7.489160 AGTTAAACAAGTTTGCCTTAAGAAGG 58.511 34.615 3.36 0.59 41.41 3.46
22 23 8.926715 AAGTTAAACAAGTTTGCCTTAAGAAG 57.073 30.769 3.36 0.00 34.23 2.85
24 25 9.959749 CATAAGTTAAACAAGTTTGCCTTAAGA 57.040 29.630 3.36 4.25 33.73 2.10
25 26 9.744468 ACATAAGTTAAACAAGTTTGCCTTAAG 57.256 29.630 16.01 14.75 33.73 1.85
26 27 9.738832 GACATAAGTTAAACAAGTTTGCCTTAA 57.261 29.630 16.01 2.70 33.73 1.85
27 28 9.127277 AGACATAAGTTAAACAAGTTTGCCTTA 57.873 29.630 8.37 12.58 34.12 2.69
28 29 7.920682 CAGACATAAGTTAAACAAGTTTGCCTT 59.079 33.333 8.37 11.11 34.23 4.35
29 30 7.068226 ACAGACATAAGTTAAACAAGTTTGCCT 59.932 33.333 8.37 1.61 34.23 4.75
30 31 7.200455 ACAGACATAAGTTAAACAAGTTTGCC 58.800 34.615 8.37 0.00 34.23 4.52
31 32 9.166126 GTACAGACATAAGTTAAACAAGTTTGC 57.834 33.333 8.37 2.03 34.23 3.68
34 35 9.826574 TGAGTACAGACATAAGTTAAACAAGTT 57.173 29.630 0.00 0.00 0.00 2.66
35 36 9.477484 CTGAGTACAGACATAAGTTAAACAAGT 57.523 33.333 0.00 0.00 46.03 3.16
36 37 9.692749 TCTGAGTACAGACATAAGTTAAACAAG 57.307 33.333 0.00 0.00 46.55 3.16
52 53 5.233050 CGGAAGCAACAATATCTGAGTACAG 59.767 44.000 0.00 0.00 44.66 2.74
53 54 5.109210 CGGAAGCAACAATATCTGAGTACA 58.891 41.667 0.00 0.00 0.00 2.90
54 55 5.643339 CGGAAGCAACAATATCTGAGTAC 57.357 43.478 0.00 0.00 0.00 2.73
71 72 1.671328 TCATAGACGAGTCAGCGGAAG 59.329 52.381 5.99 0.00 35.12 3.46
72 73 1.746470 TCATAGACGAGTCAGCGGAA 58.254 50.000 5.99 0.00 35.12 4.30
73 74 1.968704 ATCATAGACGAGTCAGCGGA 58.031 50.000 5.99 0.00 35.12 5.54
74 75 2.033424 TCAATCATAGACGAGTCAGCGG 59.967 50.000 5.99 0.00 35.12 5.52
75 76 3.295785 CTCAATCATAGACGAGTCAGCG 58.704 50.000 5.99 0.00 37.29 5.18
76 77 3.049206 GCTCAATCATAGACGAGTCAGC 58.951 50.000 5.99 0.00 0.00 4.26
77 78 4.275689 AGAGCTCAATCATAGACGAGTCAG 59.724 45.833 17.77 0.00 0.00 3.51
78 79 4.203226 AGAGCTCAATCATAGACGAGTCA 58.797 43.478 17.77 0.00 0.00 3.41
79 80 4.829064 AGAGCTCAATCATAGACGAGTC 57.171 45.455 17.77 0.00 0.00 3.36
80 81 4.400884 ACAAGAGCTCAATCATAGACGAGT 59.599 41.667 17.77 0.00 0.00 4.18
81 82 4.930963 ACAAGAGCTCAATCATAGACGAG 58.069 43.478 17.77 0.00 0.00 4.18
82 83 4.991153 ACAAGAGCTCAATCATAGACGA 57.009 40.909 17.77 0.00 0.00 4.20
83 84 6.087423 CGAATACAAGAGCTCAATCATAGACG 59.913 42.308 17.77 7.31 0.00 4.18
84 85 7.142021 TCGAATACAAGAGCTCAATCATAGAC 58.858 38.462 17.77 0.00 0.00 2.59
85 86 7.277174 TCGAATACAAGAGCTCAATCATAGA 57.723 36.000 17.77 3.46 0.00 1.98
86 87 7.565450 CTCGAATACAAGAGCTCAATCATAG 57.435 40.000 17.77 0.95 0.00 2.23
120 121 2.821969 GCATCATATTACAAGCCAGGGG 59.178 50.000 0.00 0.00 0.00 4.79
121 122 3.759581 AGCATCATATTACAAGCCAGGG 58.240 45.455 0.00 0.00 0.00 4.45
122 123 4.581824 ACAAGCATCATATTACAAGCCAGG 59.418 41.667 0.00 0.00 0.00 4.45
123 124 5.762825 ACAAGCATCATATTACAAGCCAG 57.237 39.130 0.00 0.00 0.00 4.85
124 125 6.997476 TCATACAAGCATCATATTACAAGCCA 59.003 34.615 0.00 0.00 0.00 4.75
125 126 7.173907 AGTCATACAAGCATCATATTACAAGCC 59.826 37.037 0.00 0.00 0.00 4.35
126 127 8.092521 AGTCATACAAGCATCATATTACAAGC 57.907 34.615 0.00 0.00 0.00 4.01
158 159 9.507329 AAGATATCACAACACAACTCTACAAAT 57.493 29.630 5.32 0.00 0.00 2.32
159 160 8.902540 AAGATATCACAACACAACTCTACAAA 57.097 30.769 5.32 0.00 0.00 2.83
160 161 8.902540 AAAGATATCACAACACAACTCTACAA 57.097 30.769 5.32 0.00 0.00 2.41
161 162 7.602644 GGAAAGATATCACAACACAACTCTACA 59.397 37.037 5.32 0.00 0.00 2.74
162 163 7.201444 CGGAAAGATATCACAACACAACTCTAC 60.201 40.741 5.32 0.00 0.00 2.59
163 164 6.811665 CGGAAAGATATCACAACACAACTCTA 59.188 38.462 5.32 0.00 0.00 2.43
164 165 5.639506 CGGAAAGATATCACAACACAACTCT 59.360 40.000 5.32 0.00 0.00 3.24
165 166 5.408604 ACGGAAAGATATCACAACACAACTC 59.591 40.000 5.32 0.00 0.00 3.01
166 167 5.179368 CACGGAAAGATATCACAACACAACT 59.821 40.000 5.32 0.00 0.00 3.16
167 168 5.178623 TCACGGAAAGATATCACAACACAAC 59.821 40.000 5.32 0.00 0.00 3.32
168 169 5.301555 TCACGGAAAGATATCACAACACAA 58.698 37.500 5.32 0.00 0.00 3.33
169 170 4.888917 TCACGGAAAGATATCACAACACA 58.111 39.130 5.32 0.00 0.00 3.72
170 171 4.929808 ACTCACGGAAAGATATCACAACAC 59.070 41.667 5.32 0.00 0.00 3.32
171 172 5.147330 ACTCACGGAAAGATATCACAACA 57.853 39.130 5.32 0.00 0.00 3.33
172 173 4.567159 GGACTCACGGAAAGATATCACAAC 59.433 45.833 5.32 0.00 0.00 3.32
173 174 4.382685 GGGACTCACGGAAAGATATCACAA 60.383 45.833 5.32 0.00 0.00 3.33
174 175 3.132289 GGGACTCACGGAAAGATATCACA 59.868 47.826 5.32 0.00 0.00 3.58
175 176 3.385111 AGGGACTCACGGAAAGATATCAC 59.615 47.826 5.32 0.00 0.00 3.06
176 177 3.384789 CAGGGACTCACGGAAAGATATCA 59.615 47.826 5.32 0.00 34.60 2.15
177 178 3.637229 TCAGGGACTCACGGAAAGATATC 59.363 47.826 0.00 0.00 34.60 1.63
178 179 3.643237 TCAGGGACTCACGGAAAGATAT 58.357 45.455 0.00 0.00 34.60 1.63
179 180 3.095912 TCAGGGACTCACGGAAAGATA 57.904 47.619 0.00 0.00 34.60 1.98
180 181 1.938585 TCAGGGACTCACGGAAAGAT 58.061 50.000 0.00 0.00 34.60 2.40
181 182 1.825474 GATCAGGGACTCACGGAAAGA 59.175 52.381 0.00 0.00 34.60 2.52
182 183 1.827969 AGATCAGGGACTCACGGAAAG 59.172 52.381 0.00 0.00 34.60 2.62
183 184 1.938585 AGATCAGGGACTCACGGAAA 58.061 50.000 0.00 0.00 34.60 3.13
184 185 1.550524 CAAGATCAGGGACTCACGGAA 59.449 52.381 0.00 0.00 34.60 4.30
185 186 1.186200 CAAGATCAGGGACTCACGGA 58.814 55.000 0.00 0.00 34.60 4.69
186 187 1.186200 TCAAGATCAGGGACTCACGG 58.814 55.000 0.00 0.00 34.60 4.94
187 188 2.542618 CGATCAAGATCAGGGACTCACG 60.543 54.545 10.39 0.00 34.60 4.35
188 189 2.428890 ACGATCAAGATCAGGGACTCAC 59.571 50.000 10.39 0.00 34.60 3.51
189 190 2.739943 ACGATCAAGATCAGGGACTCA 58.260 47.619 10.39 0.00 34.60 3.41
190 191 3.632604 TGTACGATCAAGATCAGGGACTC 59.367 47.826 10.39 0.00 34.60 3.36
191 192 3.381908 GTGTACGATCAAGATCAGGGACT 59.618 47.826 10.39 0.00 43.88 3.85
192 193 3.130516 TGTGTACGATCAAGATCAGGGAC 59.869 47.826 10.39 2.84 37.69 4.46
193 194 3.361786 TGTGTACGATCAAGATCAGGGA 58.638 45.455 10.39 0.00 37.69 4.20
194 195 3.801114 TGTGTACGATCAAGATCAGGG 57.199 47.619 10.39 0.00 37.69 4.45
195 196 5.503031 GCAAATGTGTACGATCAAGATCAGG 60.503 44.000 10.39 0.00 37.69 3.86
196 197 5.496387 GCAAATGTGTACGATCAAGATCAG 58.504 41.667 10.39 5.82 37.69 2.90
197 198 4.032786 CGCAAATGTGTACGATCAAGATCA 59.967 41.667 10.39 0.00 37.69 2.92
198 199 4.032900 ACGCAAATGTGTACGATCAAGATC 59.967 41.667 0.00 0.00 36.94 2.75
199 200 3.932710 ACGCAAATGTGTACGATCAAGAT 59.067 39.130 0.00 0.00 36.94 2.40
200 201 3.122780 CACGCAAATGTGTACGATCAAGA 59.877 43.478 0.00 0.00 36.94 3.02
201 202 3.407252 CACGCAAATGTGTACGATCAAG 58.593 45.455 0.00 0.00 36.94 3.02
202 203 3.447752 CACGCAAATGTGTACGATCAA 57.552 42.857 0.00 0.00 36.94 2.57
211 212 5.868257 ACACTAATCATACACGCAAATGTG 58.132 37.500 0.00 0.00 45.41 3.21
212 213 7.494298 TCATACACTAATCATACACGCAAATGT 59.506 33.333 0.00 0.00 36.56 2.71
213 214 7.850501 TCATACACTAATCATACACGCAAATG 58.149 34.615 0.00 0.00 0.00 2.32
214 215 8.607441 ATCATACACTAATCATACACGCAAAT 57.393 30.769 0.00 0.00 0.00 2.32
215 216 8.334632 CAATCATACACTAATCATACACGCAAA 58.665 33.333 0.00 0.00 0.00 3.68
216 217 7.708752 TCAATCATACACTAATCATACACGCAA 59.291 33.333 0.00 0.00 0.00 4.85
217 218 7.206687 TCAATCATACACTAATCATACACGCA 58.793 34.615 0.00 0.00 0.00 5.24
218 219 7.637709 TCAATCATACACTAATCATACACGC 57.362 36.000 0.00 0.00 0.00 5.34
221 222 9.423061 CCGATTCAATCATACACTAATCATACA 57.577 33.333 0.00 0.00 0.00 2.29
222 223 8.873830 CCCGATTCAATCATACACTAATCATAC 58.126 37.037 0.00 0.00 0.00 2.39
223 224 8.040727 CCCCGATTCAATCATACACTAATCATA 58.959 37.037 0.00 0.00 0.00 2.15
224 225 6.881065 CCCCGATTCAATCATACACTAATCAT 59.119 38.462 0.00 0.00 0.00 2.45
225 226 6.230472 CCCCGATTCAATCATACACTAATCA 58.770 40.000 0.00 0.00 0.00 2.57
226 227 5.643777 CCCCCGATTCAATCATACACTAATC 59.356 44.000 0.00 0.00 0.00 1.75
227 228 5.560724 CCCCCGATTCAATCATACACTAAT 58.439 41.667 0.00 0.00 0.00 1.73
228 229 4.745478 GCCCCCGATTCAATCATACACTAA 60.745 45.833 0.00 0.00 0.00 2.24
229 230 3.244422 GCCCCCGATTCAATCATACACTA 60.244 47.826 0.00 0.00 0.00 2.74
230 231 2.487265 GCCCCCGATTCAATCATACACT 60.487 50.000 0.00 0.00 0.00 3.55
231 232 1.880027 GCCCCCGATTCAATCATACAC 59.120 52.381 0.00 0.00 0.00 2.90
232 233 1.542328 CGCCCCCGATTCAATCATACA 60.542 52.381 0.00 0.00 36.29 2.29
233 234 1.156736 CGCCCCCGATTCAATCATAC 58.843 55.000 0.00 0.00 36.29 2.39
234 235 0.762418 ACGCCCCCGATTCAATCATA 59.238 50.000 0.00 0.00 38.29 2.15
235 236 0.535102 GACGCCCCCGATTCAATCAT 60.535 55.000 0.00 0.00 38.29 2.45
236 237 1.153249 GACGCCCCCGATTCAATCA 60.153 57.895 0.00 0.00 38.29 2.57
237 238 1.153249 TGACGCCCCCGATTCAATC 60.153 57.895 0.00 0.00 38.29 2.67
238 239 1.451387 GTGACGCCCCCGATTCAAT 60.451 57.895 0.00 0.00 38.29 2.57
239 240 2.046700 GTGACGCCCCCGATTCAA 60.047 61.111 0.00 0.00 38.29 2.69
240 241 3.309436 CTGTGACGCCCCCGATTCA 62.309 63.158 0.00 0.00 38.29 2.57
241 242 2.511600 CTGTGACGCCCCCGATTC 60.512 66.667 0.00 0.00 38.29 2.52
242 243 4.778143 GCTGTGACGCCCCCGATT 62.778 66.667 0.00 0.00 38.29 3.34
245 246 3.849951 ATAGCTGTGACGCCCCCG 61.850 66.667 0.00 0.00 41.14 5.73
246 247 2.203070 CATAGCTGTGACGCCCCC 60.203 66.667 4.09 0.00 0.00 5.40
247 248 2.028125 TAGCATAGCTGTGACGCCCC 62.028 60.000 15.47 0.00 40.10 5.80
248 249 0.179084 TTAGCATAGCTGTGACGCCC 60.179 55.000 15.47 0.00 40.10 6.13
249 250 1.651987 TTTAGCATAGCTGTGACGCC 58.348 50.000 15.47 0.00 40.10 5.68
250 251 4.637574 CTATTTAGCATAGCTGTGACGC 57.362 45.455 15.47 0.00 40.10 5.19
308 309 8.838365 ACATACAATTGTCCGTAAAGTTACAAA 58.162 29.630 15.85 0.00 35.63 2.83
315 318 6.971527 TGGTACATACAATTGTCCGTAAAG 57.028 37.500 15.85 0.00 0.00 1.85
348 351 4.209538 AGGCTAAACTAACCCAAAAACGT 58.790 39.130 0.00 0.00 0.00 3.99
356 359 7.698506 AGACATTTTTAGGCTAAACTAACCC 57.301 36.000 18.87 7.56 32.97 4.11
383 386 6.057321 TGGTACTCCCTTCGTATCAAAATT 57.943 37.500 0.00 0.00 0.00 1.82
397 400 0.179468 TGCCGCTAAATGGTACTCCC 59.821 55.000 0.00 0.00 0.00 4.30
423 426 7.834881 CTATAGTCACCCTATAGTGGTTTGA 57.165 40.000 9.48 4.17 45.72 2.69
433 436 5.775701 CCAGCTACAACTATAGTCACCCTAT 59.224 44.000 5.70 0.00 39.71 2.57
437 440 5.340439 AACCAGCTACAACTATAGTCACC 57.660 43.478 5.70 0.00 0.00 4.02
534 540 2.733956 ACAAACAAGCAAGACAAGGGA 58.266 42.857 0.00 0.00 0.00 4.20
535 541 4.321230 GGATACAAACAAGCAAGACAAGGG 60.321 45.833 0.00 0.00 0.00 3.95
569 576 6.761714 ACCGAGAAATCCTCACATGTTTATAC 59.238 38.462 0.00 0.00 42.06 1.47
570 577 6.761242 CACCGAGAAATCCTCACATGTTTATA 59.239 38.462 0.00 0.00 42.06 0.98
571 578 5.586243 CACCGAGAAATCCTCACATGTTTAT 59.414 40.000 0.00 0.00 42.06 1.40
572 579 4.935205 CACCGAGAAATCCTCACATGTTTA 59.065 41.667 0.00 0.00 42.06 2.01
573 580 3.753272 CACCGAGAAATCCTCACATGTTT 59.247 43.478 0.00 0.00 42.06 2.83
574 581 3.007940 TCACCGAGAAATCCTCACATGTT 59.992 43.478 0.00 0.00 42.06 2.71
575 582 2.567169 TCACCGAGAAATCCTCACATGT 59.433 45.455 0.00 0.00 42.06 3.21
577 584 4.494091 AATCACCGAGAAATCCTCACAT 57.506 40.909 0.00 0.00 42.06 3.21
578 585 3.981071 AATCACCGAGAAATCCTCACA 57.019 42.857 0.00 0.00 42.06 3.58
579 586 6.927294 AAATAATCACCGAGAAATCCTCAC 57.073 37.500 0.00 0.00 42.06 3.51
580 587 9.273016 GATAAAATAATCACCGAGAAATCCTCA 57.727 33.333 0.00 0.00 42.06 3.86
581 588 9.273016 TGATAAAATAATCACCGAGAAATCCTC 57.727 33.333 0.00 0.00 33.47 3.71
582 589 9.277783 CTGATAAAATAATCACCGAGAAATCCT 57.722 33.333 0.00 0.00 32.51 3.24
583 590 9.057089 ACTGATAAAATAATCACCGAGAAATCC 57.943 33.333 0.00 0.00 32.51 3.01
585 592 9.838339 AGACTGATAAAATAATCACCGAGAAAT 57.162 29.630 0.00 0.00 32.51 2.17
587 594 9.967346 CTAGACTGATAAAATAATCACCGAGAA 57.033 33.333 0.00 0.00 32.51 2.87
588 595 8.082852 GCTAGACTGATAAAATAATCACCGAGA 58.917 37.037 0.00 0.00 32.51 4.04
589 596 8.085296 AGCTAGACTGATAAAATAATCACCGAG 58.915 37.037 0.00 0.00 32.51 4.63
590 597 7.952671 AGCTAGACTGATAAAATAATCACCGA 58.047 34.615 0.00 0.00 32.51 4.69
591 598 9.130312 GTAGCTAGACTGATAAAATAATCACCG 57.870 37.037 0.00 0.00 32.51 4.94
592 599 9.982651 TGTAGCTAGACTGATAAAATAATCACC 57.017 33.333 0.00 0.00 32.51 4.02
598 605 9.764363 CCAACATGTAGCTAGACTGATAAAATA 57.236 33.333 0.00 0.00 0.00 1.40
599 606 8.267894 ACCAACATGTAGCTAGACTGATAAAAT 58.732 33.333 0.00 0.00 0.00 1.82
600 607 7.620880 ACCAACATGTAGCTAGACTGATAAAA 58.379 34.615 0.00 0.00 0.00 1.52
601 608 7.093509 TGACCAACATGTAGCTAGACTGATAAA 60.094 37.037 0.00 0.00 0.00 1.40
602 609 6.379988 TGACCAACATGTAGCTAGACTGATAA 59.620 38.462 0.00 0.00 0.00 1.75
603 610 5.891551 TGACCAACATGTAGCTAGACTGATA 59.108 40.000 0.00 0.00 0.00 2.15
604 611 4.711846 TGACCAACATGTAGCTAGACTGAT 59.288 41.667 0.00 0.00 0.00 2.90
610 617 6.741992 TTCAATTGACCAACATGTAGCTAG 57.258 37.500 7.89 0.00 0.00 3.42
622 629 5.931146 CCCGAATTCAAAATTCAATTGACCA 59.069 36.000 7.89 0.00 36.57 4.02
623 630 5.351189 CCCCGAATTCAAAATTCAATTGACC 59.649 40.000 7.89 0.00 36.57 4.02
625 632 6.107901 ACCCCGAATTCAAAATTCAATTGA 57.892 33.333 3.38 3.38 35.11 2.57
627 634 7.676004 ACTAACCCCGAATTCAAAATTCAATT 58.324 30.769 6.22 0.00 0.00 2.32
628 635 7.239763 ACTAACCCCGAATTCAAAATTCAAT 57.760 32.000 6.22 0.00 0.00 2.57
633 640 4.581868 TCGACTAACCCCGAATTCAAAAT 58.418 39.130 6.22 0.00 0.00 1.82
637 644 3.899052 AATCGACTAACCCCGAATTCA 57.101 42.857 6.22 0.00 38.36 2.57
665 672 0.544223 GAGGCCCTTCTCCTTCCTTC 59.456 60.000 0.00 0.00 33.24 3.46
666 673 1.268283 CGAGGCCCTTCTCCTTCCTT 61.268 60.000 0.00 0.00 33.24 3.36
667 674 1.687493 CGAGGCCCTTCTCCTTCCT 60.687 63.158 0.00 0.00 33.24 3.36
668 675 2.904131 CGAGGCCCTTCTCCTTCC 59.096 66.667 0.00 0.00 33.24 3.46
669 676 2.188207 GCGAGGCCCTTCTCCTTC 59.812 66.667 0.00 0.00 33.24 3.46
670 677 3.403558 GGCGAGGCCCTTCTCCTT 61.404 66.667 0.00 0.00 44.06 3.36
679 686 4.214327 CTTCTCTCCGGCGAGGCC 62.214 72.222 20.95 0.00 46.75 5.19
680 687 4.214327 CCTTCTCTCCGGCGAGGC 62.214 72.222 20.95 0.00 40.77 4.70
681 688 2.010582 CTTCCTTCTCTCCGGCGAGG 62.011 65.000 20.95 6.02 42.97 4.63
682 689 1.435515 CTTCCTTCTCTCCGGCGAG 59.564 63.158 15.55 15.55 37.48 5.03
683 690 2.052690 CCTTCCTTCTCTCCGGCGA 61.053 63.158 9.30 0.00 0.00 5.54
684 691 2.496817 CCTTCCTTCTCTCCGGCG 59.503 66.667 0.00 0.00 0.00 6.46
685 692 2.736826 CCCCTTCCTTCTCTCCGGC 61.737 68.421 0.00 0.00 0.00 6.13
686 693 2.736826 GCCCCTTCCTTCTCTCCGG 61.737 68.421 0.00 0.00 0.00 5.14
687 694 1.681486 GAGCCCCTTCCTTCTCTCCG 61.681 65.000 0.00 0.00 0.00 4.63
688 695 1.681486 CGAGCCCCTTCCTTCTCTCC 61.681 65.000 0.00 0.00 0.00 3.71
689 696 1.681486 CCGAGCCCCTTCCTTCTCTC 61.681 65.000 0.00 0.00 0.00 3.20
690 697 1.687493 CCGAGCCCCTTCCTTCTCT 60.687 63.158 0.00 0.00 0.00 3.10
691 698 2.904131 CCGAGCCCCTTCCTTCTC 59.096 66.667 0.00 0.00 0.00 2.87
692 699 3.403558 GCCGAGCCCCTTCCTTCT 61.404 66.667 0.00 0.00 0.00 2.85
708 715 1.202758 TGGATAATGGGGTGATGACGC 60.203 52.381 0.00 0.00 0.00 5.19
731 740 1.344763 CGTCCCCATCCTAAAGCCTAG 59.655 57.143 0.00 0.00 0.00 3.02
736 745 0.180406 CCACCGTCCCCATCCTAAAG 59.820 60.000 0.00 0.00 0.00 1.85
739 748 1.687840 CACCACCGTCCCCATCCTA 60.688 63.158 0.00 0.00 0.00 2.94
800 832 2.601299 GCCTAACATCCCACCCCC 59.399 66.667 0.00 0.00 0.00 5.40
805 923 4.169696 CGCCGGCCTAACATCCCA 62.170 66.667 23.46 0.00 0.00 4.37
806 924 4.929707 CCGCCGGCCTAACATCCC 62.930 72.222 23.46 0.00 0.00 3.85
809 927 2.819550 CTACCGCCGGCCTAACAT 59.180 61.111 23.46 2.16 0.00 2.71
810 928 4.151582 GCTACCGCCGGCCTAACA 62.152 66.667 23.46 0.22 0.00 2.41
821 939 1.065928 CTTCCACCGCTAGCTACCG 59.934 63.158 13.93 1.28 0.00 4.02
829 947 1.599047 CACATCTCCTTCCACCGCT 59.401 57.895 0.00 0.00 0.00 5.52
868 990 1.247419 ATGCGAAATCAACGGCCCAA 61.247 50.000 0.00 0.00 0.00 4.12
877 999 4.940654 TGTGAACCATTAGATGCGAAATCA 59.059 37.500 0.00 0.00 0.00 2.57
889 1011 6.152661 GGATCAGTCCATTTTGTGAACCATTA 59.847 38.462 0.00 0.00 44.42 1.90
890 1012 5.047092 GGATCAGTCCATTTTGTGAACCATT 60.047 40.000 0.00 0.00 44.42 3.16
978 1113 0.392595 GTTCTAGGGTTTGAGGCGGG 60.393 60.000 0.00 0.00 0.00 6.13
1053 1231 4.021925 GTGCGGCCTCCTTCACCT 62.022 66.667 0.00 0.00 0.00 4.00
1273 1451 3.160047 CAGCGGAGGAGGATGCCT 61.160 66.667 0.00 0.00 42.17 4.75
1507 1687 3.916438 TAGCTCCGGGAAGGCCACA 62.916 63.158 5.01 0.00 40.77 4.17
1534 1714 2.029964 TGGACGTTTGCGAGGGTC 59.970 61.111 0.00 0.00 42.00 4.46
1537 1717 1.068474 CTAAGTGGACGTTTGCGAGG 58.932 55.000 0.00 0.00 42.00 4.63
1576 1757 4.679373 TGTCCTAATGATCTCCTCAAGC 57.321 45.455 0.00 0.00 37.44 4.01
1696 1877 9.330063 CAGCCATAATAGTTCTCTGAACAAATA 57.670 33.333 12.16 3.40 0.00 1.40
1753 1934 2.483877 GTCAAACCAATCGATGACTGCA 59.516 45.455 0.00 0.00 39.21 4.41
1787 1968 4.808895 GGAAAGAAACTTGGCAAAATCGTT 59.191 37.500 0.00 4.59 0.00 3.85
1970 2154 9.778741 TTAGCTTTTCAGACAGATTAAAGAGAA 57.221 29.630 0.00 0.00 29.40 2.87
1971 2155 9.429359 CTTAGCTTTTCAGACAGATTAAAGAGA 57.571 33.333 0.00 0.00 29.40 3.10
1972 2156 8.174422 GCTTAGCTTTTCAGACAGATTAAAGAG 58.826 37.037 0.00 0.00 29.40 2.85
1973 2157 7.880195 AGCTTAGCTTTTCAGACAGATTAAAGA 59.120 33.333 0.00 0.00 33.89 2.52
1986 2170 1.881973 CTGTGGCAGCTTAGCTTTTCA 59.118 47.619 3.00 0.09 36.40 2.69
2174 2358 1.680207 GGAGTACCTAGATCGCGGTTT 59.320 52.381 6.13 0.00 34.76 3.27
2175 2359 1.316651 GGAGTACCTAGATCGCGGTT 58.683 55.000 6.13 0.00 34.76 4.44
2176 2360 0.182061 TGGAGTACCTAGATCGCGGT 59.818 55.000 6.13 0.00 37.04 5.68
2346 2532 3.751698 CAGACTAAAAAGAAACGGAGGGG 59.248 47.826 0.00 0.00 0.00 4.79
2347 2533 3.188667 GCAGACTAAAAAGAAACGGAGGG 59.811 47.826 0.00 0.00 0.00 4.30
2348 2534 3.813166 TGCAGACTAAAAAGAAACGGAGG 59.187 43.478 0.00 0.00 0.00 4.30
2349 2535 5.613358 ATGCAGACTAAAAAGAAACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
2350 2536 8.780846 TTATATGCAGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
2351 2537 8.879759 TCTTATATGCAGACTAAAAAGAAACGG 58.120 33.333 0.00 0.00 0.00 4.44
2551 2737 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
2552 2738 8.801299 TGCATATAAGATTTGGTCAAAGTCAAA 58.199 29.630 2.55 0.00 37.29 2.69
2553 2739 8.347004 TGCATATAAGATTTGGTCAAAGTCAA 57.653 30.769 2.55 0.00 33.32 3.18
2554 2740 7.828717 TCTGCATATAAGATTTGGTCAAAGTCA 59.171 33.333 2.55 0.00 33.32 3.41
2555 2741 8.125448 GTCTGCATATAAGATTTGGTCAAAGTC 58.875 37.037 2.55 1.51 33.32 3.01
2556 2742 7.831193 AGTCTGCATATAAGATTTGGTCAAAGT 59.169 33.333 2.55 0.00 33.32 2.66
2557 2743 8.218338 AGTCTGCATATAAGATTTGGTCAAAG 57.782 34.615 2.55 0.00 33.32 2.77
2558 2744 9.679661 TTAGTCTGCATATAAGATTTGGTCAAA 57.320 29.630 0.00 0.00 34.46 2.69
2559 2745 9.679661 TTTAGTCTGCATATAAGATTTGGTCAA 57.320 29.630 0.00 0.00 0.00 3.18
2560 2746 9.679661 TTTTAGTCTGCATATAAGATTTGGTCA 57.320 29.630 0.00 0.00 0.00 4.02
2568 2754 8.879759 CCGTTTCTTTTTAGTCTGCATATAAGA 58.120 33.333 0.00 0.00 0.00 2.10
2569 2755 8.879759 TCCGTTTCTTTTTAGTCTGCATATAAG 58.120 33.333 0.00 0.00 0.00 1.73
2570 2756 8.780846 TCCGTTTCTTTTTAGTCTGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
2571 2757 7.494625 CCTCCGTTTCTTTTTAGTCTGCATATA 59.505 37.037 0.00 0.00 0.00 0.86
2572 2758 6.316390 CCTCCGTTTCTTTTTAGTCTGCATAT 59.684 38.462 0.00 0.00 0.00 1.78
2573 2759 5.642063 CCTCCGTTTCTTTTTAGTCTGCATA 59.358 40.000 0.00 0.00 0.00 3.14
2574 2760 4.455877 CCTCCGTTTCTTTTTAGTCTGCAT 59.544 41.667 0.00 0.00 0.00 3.96
2575 2761 3.813166 CCTCCGTTTCTTTTTAGTCTGCA 59.187 43.478 0.00 0.00 0.00 4.41
2576 2762 3.188667 CCCTCCGTTTCTTTTTAGTCTGC 59.811 47.826 0.00 0.00 0.00 4.26
2577 2763 4.638304 TCCCTCCGTTTCTTTTTAGTCTG 58.362 43.478 0.00 0.00 0.00 3.51
2578 2764 4.347292 ACTCCCTCCGTTTCTTTTTAGTCT 59.653 41.667 0.00 0.00 0.00 3.24
2579 2765 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
2580 2766 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
2581 2767 5.791666 AGTACTCCCTCCGTTTCTTTTTAG 58.208 41.667 0.00 0.00 0.00 1.85
2582 2768 5.813513 AGTACTCCCTCCGTTTCTTTTTA 57.186 39.130 0.00 0.00 0.00 1.52
2583 2769 4.701651 AGTACTCCCTCCGTTTCTTTTT 57.298 40.909 0.00 0.00 0.00 1.94
2584 2770 4.701651 AAGTACTCCCTCCGTTTCTTTT 57.298 40.909 0.00 0.00 0.00 2.27
2585 2771 5.813513 TTAAGTACTCCCTCCGTTTCTTT 57.186 39.130 0.00 0.00 0.00 2.52
2586 2772 6.370186 AATTAAGTACTCCCTCCGTTTCTT 57.630 37.500 0.00 0.00 0.00 2.52
2587 2773 7.672122 ATAATTAAGTACTCCCTCCGTTTCT 57.328 36.000 0.00 0.00 0.00 2.52
2588 2774 9.636879 GATATAATTAAGTACTCCCTCCGTTTC 57.363 37.037 0.00 0.00 0.00 2.78
2589 2775 9.151177 TGATATAATTAAGTACTCCCTCCGTTT 57.849 33.333 0.00 0.00 0.00 3.60
2590 2776 8.716674 TGATATAATTAAGTACTCCCTCCGTT 57.283 34.615 0.00 0.00 0.00 4.44
2591 2777 8.750298 CATGATATAATTAAGTACTCCCTCCGT 58.250 37.037 0.00 0.00 0.00 4.69
2592 2778 8.750298 ACATGATATAATTAAGTACTCCCTCCG 58.250 37.037 0.00 0.00 0.00 4.63
2720 2906 9.875691 AAAAAGGAAAAATATACATCAGCCTTC 57.124 29.630 0.00 0.00 32.46 3.46
2748 2934 8.838365 ACACACAAATCAATACATTTTGCAAAT 58.162 25.926 13.65 0.28 34.47 2.32
2768 2954 1.678627 GCACACCATAAACCACACACA 59.321 47.619 0.00 0.00 0.00 3.72
2769 2955 1.953686 AGCACACCATAAACCACACAC 59.046 47.619 0.00 0.00 0.00 3.82
2826 3012 6.574350 ACGAAGGGACAGATATTGTTTCTAG 58.426 40.000 0.00 0.00 41.05 2.43
2895 3081 8.088981 GGACAAAGAGAAAGCGAGGATAATATA 58.911 37.037 0.00 0.00 0.00 0.86
2910 3096 7.041098 GCACTCTGAAAAATAGGACAAAGAGAA 60.041 37.037 0.00 0.00 35.13 2.87
3080 3266 8.692710 CATGGGGATATTCATAAATCAGGATTG 58.307 37.037 0.00 0.00 0.00 2.67
3098 3284 9.496710 AATGTTATATGAAATATGCATGGGGAT 57.503 29.630 10.16 0.00 40.40 3.85
3100 3286 8.533657 ACAATGTTATATGAAATATGCATGGGG 58.466 33.333 10.16 0.00 40.40 4.96
3284 3471 1.454201 TTCGACGCCAATTAATGCCA 58.546 45.000 0.00 0.00 0.00 4.92
3361 3548 4.332428 ACGTTCCCACCATAGCTAATAC 57.668 45.455 0.00 0.00 0.00 1.89
3691 3878 3.502211 CGAGGCACTGACCAAACTAAAAT 59.498 43.478 0.00 0.00 41.55 1.82
3713 3900 0.331616 ATTCCACTTGTACCCCTGCC 59.668 55.000 0.00 0.00 0.00 4.85
3835 4048 4.630505 GGTTTAAGCTGCTTGGAGTAGTAC 59.369 45.833 24.35 9.86 30.12 2.73
3863 4076 6.985188 TTCGCTTAAGCAAGATACAGAATT 57.015 33.333 26.29 0.00 42.21 2.17
3870 4083 5.874810 ACACAGATTTCGCTTAAGCAAGATA 59.125 36.000 26.29 12.13 42.21 1.98
3891 4104 4.637534 ACCATGCATCTAAGTCAATCACAC 59.362 41.667 0.00 0.00 0.00 3.82
3911 4124 1.663643 GATGCATTACGCGAAAGACCA 59.336 47.619 15.93 2.55 46.97 4.02
3945 4158 1.679641 CAGACACATGCATGGCCCA 60.680 57.895 29.41 0.00 0.00 5.36
4078 4291 5.477984 TCTTCTGCTTTACCTGCATGAAAAT 59.522 36.000 0.00 0.00 39.86 1.82
4081 4294 4.005650 CTCTTCTGCTTTACCTGCATGAA 58.994 43.478 0.00 0.00 39.86 2.57
4147 4360 2.143594 AACTGTCTCGTCGGAGCCAC 62.144 60.000 0.00 0.00 40.26 5.01
4148 4361 1.863662 GAACTGTCTCGTCGGAGCCA 61.864 60.000 0.00 0.00 40.26 4.75
4221 4436 6.601332 TCTAACAGAACTGGTTCCTTTTGAT 58.399 36.000 9.51 0.66 40.33 2.57
4244 4459 4.939052 TGCTAGCAGTCCCTTTATACTC 57.061 45.455 14.93 0.00 0.00 2.59
4245 4460 5.896073 AATGCTAGCAGTCCCTTTATACT 57.104 39.130 23.89 0.00 0.00 2.12
4246 4461 6.318900 ACAAAATGCTAGCAGTCCCTTTATAC 59.681 38.462 23.89 0.00 0.00 1.47
4247 4462 6.318648 CACAAAATGCTAGCAGTCCCTTTATA 59.681 38.462 23.89 0.00 0.00 0.98
4248 4463 5.126061 CACAAAATGCTAGCAGTCCCTTTAT 59.874 40.000 23.89 7.44 0.00 1.40
4249 4464 4.458989 CACAAAATGCTAGCAGTCCCTTTA 59.541 41.667 23.89 0.00 0.00 1.85
4255 4470 5.043248 ACAAAACACAAAATGCTAGCAGTC 58.957 37.500 23.89 0.00 0.00 3.51
4300 4515 0.527817 GACCGAAGCACCGATGGTAG 60.528 60.000 0.00 0.00 34.76 3.18
4302 4517 2.264794 GACCGAAGCACCGATGGT 59.735 61.111 0.00 0.00 38.52 3.55
4316 4531 1.064946 CTCATCGTCGGCTCTGACC 59.935 63.158 3.48 0.00 35.40 4.02
4415 4632 2.616842 GAGGCCTGAAAAGTCAAACGAA 59.383 45.455 12.00 0.00 31.88 3.85
4428 4645 2.440409 GCTTCATTTTCAGAGGCCTGA 58.560 47.619 12.00 0.00 46.95 3.86
4449 4666 6.923508 GGATATAATACCAAAAGGCAAAGTGC 59.076 38.462 0.00 0.00 44.08 4.40
4520 4740 8.084684 GTGCAGTTTTTCTTAAGAATGGAAGAT 58.915 33.333 18.37 4.27 33.54 2.40
4584 4811 1.977293 GCCTAAGACTGGGGGCTCAG 61.977 65.000 6.80 6.80 41.20 3.35
4630 4859 5.224821 ACAAACCTTCTCTTGGTACCTAC 57.775 43.478 14.36 0.00 36.69 3.18
4723 4981 5.279106 CCCAATCAGCAAATGTTTCTCTCAA 60.279 40.000 0.00 0.00 0.00 3.02
4860 5118 4.456911 ACCATGTCAGTGCACATAAAAGAG 59.543 41.667 21.04 3.72 35.10 2.85
4866 5124 5.392919 GCAAAATACCATGTCAGTGCACATA 60.393 40.000 21.04 2.90 35.10 2.29
4867 5125 4.618927 GCAAAATACCATGTCAGTGCACAT 60.619 41.667 21.04 0.00 37.49 3.21
4875 5133 9.579768 GTATATTTTGTGCAAAATACCATGTCA 57.420 29.630 23.89 9.00 43.38 3.58
5007 5266 6.734137 AGTCGAAATGCAAAATAAGTTGACA 58.266 32.000 0.00 0.00 0.00 3.58
5033 5292 9.262358 GTGTTTTGTTGGCCAAGTTAATAATTA 57.738 29.630 21.21 0.00 33.75 1.40
5039 5298 4.537135 TGTGTTTTGTTGGCCAAGTTAA 57.463 36.364 21.21 11.98 33.75 2.01
5047 5306 4.119136 AGCATTAGTTGTGTTTTGTTGGC 58.881 39.130 0.00 0.00 0.00 4.52
5073 5332 8.943002 AGTACAAATTCAAGGGTATAGTTTTCG 58.057 33.333 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.