Multiple sequence alignment - TraesCS5A01G207500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G207500 chr5A 100.000 9091 0 0 1 9091 419680895 419689985 0.000000e+00 16789.0
1 TraesCS5A01G207500 chr5A 94.909 275 13 1 5028 5302 595039049 595039322 6.520000e-116 429.0
2 TraesCS5A01G207500 chr5D 96.346 4707 95 15 380 5041 322954581 322959255 0.000000e+00 7668.0
3 TraesCS5A01G207500 chr5D 98.204 2839 32 9 5298 8124 322959252 322962083 0.000000e+00 4942.0
4 TraesCS5A01G207500 chr5D 89.302 673 49 5 8420 9091 322962328 322962978 0.000000e+00 822.0
5 TraesCS5A01G207500 chr5D 96.316 190 7 0 8230 8419 322962083 322962272 6.850000e-81 313.0
6 TraesCS5A01G207500 chr5D 91.406 128 9 1 8117 8242 512228694 512228821 3.370000e-39 174.0
7 TraesCS5A01G207500 chr5D 83.243 185 29 2 5986 6168 315936149 315935965 1.570000e-37 169.0
8 TraesCS5A01G207500 chr5D 81.667 180 32 1 5986 6164 395733686 395733865 2.050000e-31 148.0
9 TraesCS5A01G207500 chr5B 91.426 2356 109 34 2 2327 375167492 375169784 0.000000e+00 3145.0
10 TraesCS5A01G207500 chr5B 96.500 1343 43 4 6705 8044 375174239 375175580 0.000000e+00 2217.0
11 TraesCS5A01G207500 chr5B 91.278 1479 57 35 2952 4391 375170813 375172258 0.000000e+00 1951.0
12 TraesCS5A01G207500 chr5B 89.035 1213 71 26 5391 6576 375172892 375174069 0.000000e+00 1447.0
13 TraesCS5A01G207500 chr5B 88.401 638 70 4 8420 9055 375175951 375176586 0.000000e+00 765.0
14 TraesCS5A01G207500 chr5B 89.941 507 29 8 4536 5034 375172367 375172859 1.290000e-177 634.0
15 TraesCS5A01G207500 chr5B 93.624 298 17 2 2332 2629 375169927 375170222 2.330000e-120 444.0
16 TraesCS5A01G207500 chr5B 95.506 267 11 1 5038 5304 15570734 15570469 8.440000e-115 425.0
17 TraesCS5A01G207500 chr5B 90.576 191 16 2 8230 8419 375175697 375175886 1.520000e-62 252.0
18 TraesCS5A01G207500 chr5B 94.030 134 6 1 2822 2955 375170483 375170614 1.550000e-47 202.0
19 TraesCS5A01G207500 chr5B 92.793 111 7 1 4376 4486 254944379 254944488 9.450000e-35 159.0
20 TraesCS5A01G207500 chr5B 92.308 91 7 0 8034 8124 375175607 375175697 7.410000e-26 130.0
21 TraesCS5A01G207500 chr5B 92.857 70 5 0 4485 4554 375172257 375172326 1.610000e-17 102.0
22 TraesCS5A01G207500 chr5B 90.541 74 7 0 6571 6644 375174160 375174233 2.090000e-16 99.0
23 TraesCS5A01G207500 chr3B 97.348 264 6 1 5039 5302 420410902 420410640 1.800000e-121 448.0
24 TraesCS5A01G207500 chr6B 96.654 269 6 3 5035 5301 375596428 375596695 2.330000e-120 444.0
25 TraesCS5A01G207500 chr7B 95.849 265 10 1 5037 5301 417932424 417932161 2.350000e-115 427.0
26 TraesCS5A01G207500 chr1B 95.833 264 9 2 5039 5301 561553346 561553084 8.440000e-115 425.0
27 TraesCS5A01G207500 chr4B 95.506 267 9 3 5039 5304 127192012 127191748 3.030000e-114 424.0
28 TraesCS5A01G207500 chr4B 85.987 157 19 3 5994 6148 317763379 317763534 2.030000e-36 165.0
29 TraesCS5A01G207500 chr4B 90.678 118 10 1 4390 4506 570801842 570801959 1.220000e-33 156.0
30 TraesCS5A01G207500 chr4B 91.150 113 10 0 4374 4486 262872620 262872508 4.400000e-33 154.0
31 TraesCS5A01G207500 chr4D 93.357 286 15 4 5040 5322 37936498 37936782 3.930000e-113 420.0
32 TraesCS5A01G207500 chr4D 86.897 145 14 4 8105 8247 440586851 440586710 3.400000e-34 158.0
33 TraesCS5A01G207500 chr4D 86.325 117 13 3 6037 6151 212159257 212159142 3.450000e-24 124.0
34 TraesCS5A01G207500 chr2D 93.080 289 16 4 5040 5325 204112684 204112971 3.930000e-113 420.0
35 TraesCS5A01G207500 chr2D 93.913 115 7 0 8126 8240 326217582 326217468 3.370000e-39 174.0
36 TraesCS5A01G207500 chr2D 95.238 105 3 2 4387 4490 178280731 178280834 2.030000e-36 165.0
37 TraesCS5A01G207500 chr3A 80.632 253 36 11 5924 6164 186047772 186047521 5.610000e-42 183.0
38 TraesCS5A01G207500 chr3A 90.598 117 8 3 4381 4497 614663642 614663529 1.580000e-32 152.0
39 TraesCS5A01G207500 chr7A 96.226 106 4 0 8126 8231 685837727 685837622 3.370000e-39 174.0
40 TraesCS5A01G207500 chr7A 97.059 102 3 0 8130 8231 729073321 729073220 1.210000e-38 172.0
41 TraesCS5A01G207500 chr7A 92.500 120 8 1 8119 8238 277729314 277729196 4.360000e-38 171.0
42 TraesCS5A01G207500 chr7A 92.982 114 7 1 4379 4492 164447451 164447339 2.030000e-36 165.0
43 TraesCS5A01G207500 chr7D 92.562 121 7 2 8119 8238 423304970 423305089 1.210000e-38 172.0
44 TraesCS5A01G207500 chr1A 93.220 118 6 2 8115 8231 449852162 449852278 1.210000e-38 172.0
45 TraesCS5A01G207500 chr1A 93.023 43 3 0 9047 9089 574510292 574510250 7.620000e-06 63.9
46 TraesCS5A01G207500 chr6A 91.803 122 10 0 8116 8237 379262304 379262425 4.360000e-38 171.0
47 TraesCS5A01G207500 chr6A 95.098 102 5 0 4386 4487 507116912 507117013 2.630000e-35 161.0
48 TraesCS5A01G207500 chr4A 84.302 172 24 3 5994 6163 312683337 312683167 2.030000e-36 165.0
49 TraesCS5A01G207500 chr3D 84.906 159 21 3 6007 6164 159794657 159794501 3.400000e-34 158.0
50 TraesCS5A01G207500 chr6D 92.593 108 8 0 4387 4494 467773475 467773582 1.220000e-33 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G207500 chr5A 419680895 419689985 9090 False 16789.00 16789 100.00000 1 9091 1 chr5A.!!$F1 9090
1 TraesCS5A01G207500 chr5D 322954581 322962978 8397 False 3436.25 7668 95.04200 380 9091 4 chr5D.!!$F3 8711
2 TraesCS5A01G207500 chr5B 375167492 375176586 9094 False 949.00 3145 91.70975 2 9055 12 chr5B.!!$F2 9053

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 288 0.460311 AAAGCGATGTACTCCCTCCG 59.540 55.000 0.00 0.00 0.00 4.63 F
1293 1338 1.033746 CCTCCTTCCCGCAGTACGTA 61.034 60.000 0.00 0.00 41.42 3.57 F
2092 2139 1.076192 AGCTGCCTTGGAATGCTGT 59.924 52.632 0.00 0.00 32.32 4.40 F
3321 3813 0.471617 ACAGACCTGCTTCTGCTTGT 59.528 50.000 9.62 0.00 46.09 3.16 F
4330 4855 0.180171 TGATAAGGACCATGTGGCCG 59.820 55.000 0.00 0.00 39.32 6.13 F
5067 5670 1.528161 CCGTTTCTTTTTACTCCGCGT 59.472 47.619 4.92 0.00 0.00 6.01 F
5068 5671 2.730928 CCGTTTCTTTTTACTCCGCGTA 59.269 45.455 4.92 0.00 0.00 4.42 F
6367 6995 1.880027 ACCTCGTTCATTGTTTCAGCC 59.120 47.619 0.00 0.00 0.00 4.85 F
7194 7921 0.529337 CAGACTACCAGATGCGCCTG 60.529 60.000 4.18 5.71 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1850 1897 0.319900 TTCTTGACTGAGCACCTCGC 60.320 55.000 0.00 0.0 42.91 5.03 R
2711 2913 0.332632 TCCCAAGGGAATGCAGGAAG 59.667 55.000 5.09 0.0 42.05 3.46 R
4069 4592 1.176527 AATTCAGAATGTGCGTGGGG 58.823 50.000 0.00 0.0 37.40 4.96 R
5294 5897 0.396811 ACGGCCATGCTAATACTCCC 59.603 55.000 2.24 0.0 0.00 4.30 R
5295 5898 1.873591 CAACGGCCATGCTAATACTCC 59.126 52.381 2.24 0.0 0.00 3.85 R
6330 6958 2.808543 GAGGTACAGTTTGAGCCAACAG 59.191 50.000 0.00 0.0 0.00 3.16 R
6593 7317 5.241728 ACAGCTCACCTTGAAGAAAATAACC 59.758 40.000 0.00 0.0 0.00 2.85 R
8064 8834 1.410850 GCCATAGCCCTGCCAGAGTA 61.411 60.000 0.00 0.0 0.00 2.59 R
8904 9740 0.182775 AGCTGAGGGAACAACCGTTT 59.817 50.000 0.00 0.0 40.11 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 7.556275 TCAAGGGCAGTAGAAATATTTACAAGG 59.444 37.037 0.00 0.00 0.00 3.61
51 52 7.208064 AGGGCAGTAGAAATATTTACAAGGA 57.792 36.000 0.00 0.00 0.00 3.36
52 53 7.283329 AGGGCAGTAGAAATATTTACAAGGAG 58.717 38.462 0.00 0.00 0.00 3.69
58 59 9.367444 AGTAGAAATATTTACAAGGAGAACACG 57.633 33.333 0.00 0.00 0.00 4.49
63 64 4.659111 TTTACAAGGAGAACACGAGTCA 57.341 40.909 0.00 0.00 0.00 3.41
72 73 2.230025 AGAACACGAGTCAGTGGATGAG 59.770 50.000 16.00 0.00 45.80 2.90
74 75 1.964223 ACACGAGTCAGTGGATGAGTT 59.036 47.619 16.00 0.00 45.80 3.01
92 93 6.198650 TGAGTTGACATGCCAATTGATAAG 57.801 37.500 7.12 0.00 0.00 1.73
93 94 5.002464 AGTTGACATGCCAATTGATAAGC 57.998 39.130 7.12 1.96 0.00 3.09
97 98 2.101917 ACATGCCAATTGATAAGCTGCC 59.898 45.455 7.12 0.00 0.00 4.85
121 122 7.067008 GCCAGCTTTAGGAAAACTTATATGTGA 59.933 37.037 0.00 0.00 0.00 3.58
125 126 9.937175 GCTTTAGGAAAACTTATATGTGACATC 57.063 33.333 0.00 0.00 0.00 3.06
138 139 9.952030 TTATATGTGACATCTGGAGTAAAAACA 57.048 29.630 0.00 0.00 0.00 2.83
149 150 4.462483 TGGAGTAAAAACATTCCCTCATGC 59.538 41.667 0.00 0.00 0.00 4.06
150 151 4.706962 GGAGTAAAAACATTCCCTCATGCT 59.293 41.667 0.00 0.00 0.00 3.79
151 152 5.885912 GGAGTAAAAACATTCCCTCATGCTA 59.114 40.000 0.00 0.00 0.00 3.49
152 153 6.547510 GGAGTAAAAACATTCCCTCATGCTAT 59.452 38.462 0.00 0.00 0.00 2.97
153 154 7.255277 GGAGTAAAAACATTCCCTCATGCTATC 60.255 40.741 0.00 0.00 0.00 2.08
166 174 6.411906 CCCTCATGCTATCTAGATATCCCTCT 60.412 46.154 12.86 0.00 0.00 3.69
167 175 7.068702 CCTCATGCTATCTAGATATCCCTCTT 58.931 42.308 12.86 0.00 0.00 2.85
172 180 7.474445 TGCTATCTAGATATCCCTCTTGTCTT 58.526 38.462 12.86 0.00 0.00 3.01
181 189 4.706842 TCCCTCTTGTCTTGTTAAAGCT 57.293 40.909 0.00 0.00 33.06 3.74
183 191 4.137543 CCCTCTTGTCTTGTTAAAGCTGT 58.862 43.478 0.00 0.00 33.06 4.40
203 211 4.995124 TGTCGTTCTAGACAAGATAAGGC 58.005 43.478 0.00 0.00 46.81 4.35
209 217 7.033791 CGTTCTAGACAAGATAAGGCTAAACA 58.966 38.462 0.00 0.00 33.05 2.83
279 287 2.552031 GAAAAGCGATGTACTCCCTCC 58.448 52.381 0.00 0.00 0.00 4.30
280 288 0.460311 AAAGCGATGTACTCCCTCCG 59.540 55.000 0.00 0.00 0.00 4.63
283 291 1.102222 GCGATGTACTCCCTCCGTCT 61.102 60.000 0.00 0.00 0.00 4.18
286 294 2.588620 GATGTACTCCCTCCGTCTCAT 58.411 52.381 0.00 0.00 0.00 2.90
291 299 5.068636 TGTACTCCCTCCGTCTCATAATAC 58.931 45.833 0.00 0.00 0.00 1.89
292 300 4.456662 ACTCCCTCCGTCTCATAATACT 57.543 45.455 0.00 0.00 0.00 2.12
294 302 6.142259 ACTCCCTCCGTCTCATAATACTAT 57.858 41.667 0.00 0.00 0.00 2.12
296 304 7.696981 ACTCCCTCCGTCTCATAATACTATAA 58.303 38.462 0.00 0.00 0.00 0.98
298 306 7.925622 TCCCTCCGTCTCATAATACTATAAGA 58.074 38.462 0.00 0.00 0.00 2.10
299 307 8.558312 TCCCTCCGTCTCATAATACTATAAGAT 58.442 37.037 0.00 0.00 0.00 2.40
300 308 9.848710 CCCTCCGTCTCATAATACTATAAGATA 57.151 37.037 0.00 0.00 0.00 1.98
435 451 4.635765 GCTCTGCACCTTGAATGTATGTAA 59.364 41.667 0.00 0.00 0.00 2.41
436 452 5.297776 GCTCTGCACCTTGAATGTATGTAAT 59.702 40.000 0.00 0.00 0.00 1.89
437 453 6.483307 GCTCTGCACCTTGAATGTATGTAATA 59.517 38.462 0.00 0.00 0.00 0.98
438 454 7.012327 GCTCTGCACCTTGAATGTATGTAATAA 59.988 37.037 0.00 0.00 0.00 1.40
440 456 9.407380 TCTGCACCTTGAATGTATGTAATAAAT 57.593 29.630 0.00 0.00 0.00 1.40
480 497 2.664698 GCCAACCGAAAGATCACGTTTC 60.665 50.000 0.00 0.00 0.00 2.78
483 500 2.140717 ACCGAAAGATCACGTTTCACC 58.859 47.619 0.00 0.00 34.16 4.02
601 622 4.717313 GTCCTTGACGGCCACCCC 62.717 72.222 2.24 0.00 0.00 4.95
715 750 4.778143 CCCACGTAGGCAGGCACC 62.778 72.222 0.00 0.00 35.39 5.01
1293 1338 1.033746 CCTCCTTCCCGCAGTACGTA 61.034 60.000 0.00 0.00 41.42 3.57
1354 1399 1.849823 AAGCTGCAGAAGGAGGGGT 60.850 57.895 20.43 0.00 33.18 4.95
1404 1449 4.222847 GGGATCGTCACGGGAGGC 62.223 72.222 1.57 0.00 0.00 4.70
1425 1470 2.771762 GAGCTCTGGGAGGGCCAT 60.772 66.667 6.18 0.00 35.15 4.40
1551 1596 2.413239 CGCGTGTCCGTTAAGTCTCTAA 60.413 50.000 0.00 0.00 36.15 2.10
1761 1806 4.632688 CGCCCTTTCCGTAGATTTCTTTTA 59.367 41.667 0.00 0.00 0.00 1.52
1762 1807 5.296035 CGCCCTTTCCGTAGATTTCTTTTAT 59.704 40.000 0.00 0.00 0.00 1.40
1803 1848 3.010250 TGAGCTGTAGGACTAGAGGTTCA 59.990 47.826 9.19 6.67 37.31 3.18
1832 1877 3.173965 TCTTCTGAAGTCTGGGTTAGGG 58.826 50.000 16.43 0.00 0.00 3.53
1841 1886 4.371681 AGTCTGGGTTAGGGTGTATGATT 58.628 43.478 0.00 0.00 0.00 2.57
1850 1897 4.443978 AGGGTGTATGATTCCTCAATGG 57.556 45.455 0.00 0.00 34.37 3.16
2036 2083 8.161699 ACTGTTTAATTGTGTAAGTACTTGGG 57.838 34.615 18.56 0.00 0.00 4.12
2084 2131 1.542492 ATCACTTTCAGCTGCCTTGG 58.458 50.000 9.47 0.00 0.00 3.61
2092 2139 1.076192 AGCTGCCTTGGAATGCTGT 59.924 52.632 0.00 0.00 32.32 4.40
2577 2762 2.504175 GGGTGGTAATCTTGGTGCTCTA 59.496 50.000 0.00 0.00 0.00 2.43
2711 2913 3.537806 TCGTTTCTTCGTTCAATTTCGC 58.462 40.909 0.00 0.00 0.00 4.70
2840 3125 5.702865 CTGTTACATGGTATATGGCATTGC 58.297 41.667 4.78 0.00 0.00 3.56
2870 3155 7.748847 ACTTTGTCGTAAATACCTGCATTAAG 58.251 34.615 0.00 0.00 0.00 1.85
3321 3813 0.471617 ACAGACCTGCTTCTGCTTGT 59.528 50.000 9.62 0.00 46.09 3.16
3341 3833 8.321353 TGCTTGTAATCTCTTTAATCCTCTTGA 58.679 33.333 0.00 0.00 0.00 3.02
3659 4182 6.674694 ATGATGCTCTGTCATGTTTCTAAC 57.325 37.500 0.00 0.00 35.12 2.34
3973 4496 4.695455 TGCTGTTGCTAGGTAATTCAAGTC 59.305 41.667 0.00 0.00 40.48 3.01
4103 4626 5.885230 TCTGAATTATGCTTGTCAGTTGG 57.115 39.130 0.00 0.00 38.87 3.77
4148 4673 0.462047 CCCGTAGTGGCAAGGACATC 60.462 60.000 0.00 0.00 35.87 3.06
4149 4674 0.249120 CCGTAGTGGCAAGGACATCA 59.751 55.000 0.00 0.00 0.00 3.07
4150 4675 1.338674 CCGTAGTGGCAAGGACATCAA 60.339 52.381 0.00 0.00 0.00 2.57
4151 4676 2.002586 CGTAGTGGCAAGGACATCAAG 58.997 52.381 0.00 0.00 0.00 3.02
4152 4677 2.612972 CGTAGTGGCAAGGACATCAAGT 60.613 50.000 0.00 0.00 0.00 3.16
4153 4678 3.368013 CGTAGTGGCAAGGACATCAAGTA 60.368 47.826 0.00 0.00 0.00 2.24
4154 4679 4.680708 CGTAGTGGCAAGGACATCAAGTAT 60.681 45.833 0.00 0.00 0.00 2.12
4155 4680 4.307032 AGTGGCAAGGACATCAAGTATT 57.693 40.909 0.00 0.00 0.00 1.89
4201 4726 0.728129 TCTCACGTCTTACTTGCGCG 60.728 55.000 0.00 0.00 0.00 6.86
4330 4855 0.180171 TGATAAGGACCATGTGGCCG 59.820 55.000 0.00 0.00 39.32 6.13
4377 4902 9.683069 AGAAGTTTGAAGTTGCATTACATAAAG 57.317 29.630 0.00 0.00 0.00 1.85
4537 5121 7.277174 ACCTTTTGAGGTGAATTTCAAGTAG 57.723 36.000 0.00 0.00 41.33 2.57
4546 5130 8.641498 AGGTGAATTTCAAGTAGACATGATTT 57.359 30.769 0.00 0.00 0.00 2.17
4547 5131 8.734386 AGGTGAATTTCAAGTAGACATGATTTC 58.266 33.333 0.00 0.00 0.00 2.17
4567 5151 9.950680 TGATTTCTCTGACTTATTTTTCACAAC 57.049 29.630 0.00 0.00 0.00 3.32
4575 5159 5.758924 ACTTATTTTTCACAACGGAGAAGC 58.241 37.500 0.00 0.00 0.00 3.86
4592 5176 2.961424 GCACCTGCTGGTATTGGTT 58.039 52.632 15.70 0.00 46.60 3.67
4625 5209 3.906720 TTGAGGCTGGGTAGTTGATAC 57.093 47.619 0.00 0.00 0.00 2.24
4660 5244 7.286313 TGATGATTGCACCCATGTTATAGTTA 58.714 34.615 4.88 0.00 0.00 2.24
4826 5411 2.852449 TGCCATGTTCTTTACAACCGA 58.148 42.857 0.00 0.00 40.89 4.69
5043 5646 5.353394 TGGATGGACCATGTAAAGTACTC 57.647 43.478 12.99 0.00 44.64 2.59
5044 5647 4.163458 TGGATGGACCATGTAAAGTACTCC 59.837 45.833 12.99 4.00 44.64 3.85
5045 5648 4.444449 GGATGGACCATGTAAAGTACTCCC 60.444 50.000 12.99 0.00 38.79 4.30
5046 5649 3.798515 TGGACCATGTAAAGTACTCCCT 58.201 45.455 0.00 0.00 0.00 4.20
5047 5650 3.773119 TGGACCATGTAAAGTACTCCCTC 59.227 47.826 0.00 0.00 0.00 4.30
5048 5651 3.134262 GGACCATGTAAAGTACTCCCTCC 59.866 52.174 0.00 0.00 0.00 4.30
5049 5652 2.764572 ACCATGTAAAGTACTCCCTCCG 59.235 50.000 0.00 0.00 0.00 4.63
5050 5653 2.764572 CCATGTAAAGTACTCCCTCCGT 59.235 50.000 0.00 0.00 0.00 4.69
5051 5654 3.197116 CCATGTAAAGTACTCCCTCCGTT 59.803 47.826 0.00 0.00 0.00 4.44
5052 5655 4.323257 CCATGTAAAGTACTCCCTCCGTTT 60.323 45.833 0.00 0.00 0.00 3.60
5053 5656 4.525912 TGTAAAGTACTCCCTCCGTTTC 57.474 45.455 0.00 0.00 0.00 2.78
5054 5657 4.154942 TGTAAAGTACTCCCTCCGTTTCT 58.845 43.478 0.00 0.00 0.00 2.52
5055 5658 4.590222 TGTAAAGTACTCCCTCCGTTTCTT 59.410 41.667 0.00 0.00 0.00 2.52
5056 5659 4.701651 AAAGTACTCCCTCCGTTTCTTT 57.298 40.909 0.00 0.00 0.00 2.52
5057 5660 4.701651 AAGTACTCCCTCCGTTTCTTTT 57.298 40.909 0.00 0.00 0.00 2.27
5058 5661 4.701651 AGTACTCCCTCCGTTTCTTTTT 57.298 40.909 0.00 0.00 0.00 1.94
5059 5662 5.813513 AGTACTCCCTCCGTTTCTTTTTA 57.186 39.130 0.00 0.00 0.00 1.52
5060 5663 5.545588 AGTACTCCCTCCGTTTCTTTTTAC 58.454 41.667 0.00 0.00 0.00 2.01
5061 5664 4.701651 ACTCCCTCCGTTTCTTTTTACT 57.298 40.909 0.00 0.00 0.00 2.24
5062 5665 4.639334 ACTCCCTCCGTTTCTTTTTACTC 58.361 43.478 0.00 0.00 0.00 2.59
5063 5666 4.001652 CTCCCTCCGTTTCTTTTTACTCC 58.998 47.826 0.00 0.00 0.00 3.85
5064 5667 2.740447 CCCTCCGTTTCTTTTTACTCCG 59.260 50.000 0.00 0.00 0.00 4.63
5065 5668 2.159037 CCTCCGTTTCTTTTTACTCCGC 59.841 50.000 0.00 0.00 0.00 5.54
5066 5669 1.794116 TCCGTTTCTTTTTACTCCGCG 59.206 47.619 0.00 0.00 0.00 6.46
5067 5670 1.528161 CCGTTTCTTTTTACTCCGCGT 59.472 47.619 4.92 0.00 0.00 6.01
5068 5671 2.730928 CCGTTTCTTTTTACTCCGCGTA 59.269 45.455 4.92 0.00 0.00 4.42
5069 5672 3.368843 CCGTTTCTTTTTACTCCGCGTAT 59.631 43.478 4.92 0.00 0.00 3.06
5070 5673 4.562394 CCGTTTCTTTTTACTCCGCGTATA 59.438 41.667 4.92 0.00 0.00 1.47
5071 5674 5.062058 CCGTTTCTTTTTACTCCGCGTATAA 59.938 40.000 4.92 0.00 0.00 0.98
5072 5675 6.173724 CGTTTCTTTTTACTCCGCGTATAAG 58.826 40.000 4.92 0.00 0.00 1.73
5073 5676 6.183360 CGTTTCTTTTTACTCCGCGTATAAGT 60.183 38.462 4.92 5.65 0.00 2.24
5074 5677 7.513132 GTTTCTTTTTACTCCGCGTATAAGTT 58.487 34.615 4.92 0.00 0.00 2.66
5075 5678 7.656707 TTCTTTTTACTCCGCGTATAAGTTT 57.343 32.000 4.92 0.00 0.00 2.66
5076 5679 7.656707 TCTTTTTACTCCGCGTATAAGTTTT 57.343 32.000 4.92 0.00 0.00 2.43
5077 5680 7.512297 TCTTTTTACTCCGCGTATAAGTTTTG 58.488 34.615 4.92 0.00 0.00 2.44
5078 5681 5.783100 TTTACTCCGCGTATAAGTTTTGG 57.217 39.130 4.92 0.00 0.00 3.28
5079 5682 3.323751 ACTCCGCGTATAAGTTTTGGT 57.676 42.857 4.92 0.00 0.00 3.67
5080 5683 3.256558 ACTCCGCGTATAAGTTTTGGTC 58.743 45.455 4.92 0.00 0.00 4.02
5081 5684 3.255725 CTCCGCGTATAAGTTTTGGTCA 58.744 45.455 4.92 0.00 0.00 4.02
5082 5685 3.661944 TCCGCGTATAAGTTTTGGTCAA 58.338 40.909 4.92 0.00 0.00 3.18
5083 5686 4.063689 TCCGCGTATAAGTTTTGGTCAAA 58.936 39.130 4.92 0.00 0.00 2.69
5084 5687 4.152759 TCCGCGTATAAGTTTTGGTCAAAG 59.847 41.667 4.92 0.00 0.00 2.77
5085 5688 4.083696 CCGCGTATAAGTTTTGGTCAAAGT 60.084 41.667 4.92 0.00 0.00 2.66
5086 5689 5.077424 CGCGTATAAGTTTTGGTCAAAGTC 58.923 41.667 0.00 0.00 0.00 3.01
5087 5690 5.333492 CGCGTATAAGTTTTGGTCAAAGTCA 60.333 40.000 0.00 0.00 0.00 3.41
5088 5691 6.432107 GCGTATAAGTTTTGGTCAAAGTCAA 58.568 36.000 0.00 0.00 0.00 3.18
5089 5692 6.913673 GCGTATAAGTTTTGGTCAAAGTCAAA 59.086 34.615 0.00 0.00 0.00 2.69
5090 5693 7.096763 GCGTATAAGTTTTGGTCAAAGTCAAAC 60.097 37.037 0.00 0.00 33.29 2.93
5091 5694 8.126700 CGTATAAGTTTTGGTCAAAGTCAAACT 58.873 33.333 0.00 0.00 33.29 2.66
5094 5697 6.827586 AGTTTTGGTCAAAGTCAAACTACA 57.172 33.333 0.00 0.00 33.29 2.74
5095 5698 6.617879 AGTTTTGGTCAAAGTCAAACTACAC 58.382 36.000 0.00 0.00 33.29 2.90
5096 5699 6.207810 AGTTTTGGTCAAAGTCAAACTACACA 59.792 34.615 0.00 0.00 33.29 3.72
5097 5700 6.576662 TTTGGTCAAAGTCAAACTACACAA 57.423 33.333 0.00 0.00 0.00 3.33
5098 5701 6.576662 TTGGTCAAAGTCAAACTACACAAA 57.423 33.333 0.00 0.00 0.00 2.83
5099 5702 6.189677 TGGTCAAAGTCAAACTACACAAAG 57.810 37.500 0.00 0.00 0.00 2.77
5100 5703 5.708230 TGGTCAAAGTCAAACTACACAAAGT 59.292 36.000 0.00 0.00 0.00 2.66
5101 5704 6.207810 TGGTCAAAGTCAAACTACACAAAGTT 59.792 34.615 0.00 0.00 41.46 2.66
5112 5715 8.840833 AAACTACACAAAGTTTGACCAAATTT 57.159 26.923 22.23 11.30 45.60 1.82
5113 5716 9.930693 AAACTACACAAAGTTTGACCAAATTTA 57.069 25.926 22.23 0.00 45.60 1.40
5182 5785 7.459394 GAAAATACATTTCATGGTGCATCTG 57.541 36.000 0.00 0.00 45.58 2.90
5183 5786 5.524971 AATACATTTCATGGTGCATCTGG 57.475 39.130 0.00 0.00 33.60 3.86
5184 5787 3.090210 ACATTTCATGGTGCATCTGGA 57.910 42.857 0.00 0.00 33.60 3.86
5185 5788 3.433343 ACATTTCATGGTGCATCTGGAA 58.567 40.909 0.00 0.00 33.60 3.53
5186 5789 3.833650 ACATTTCATGGTGCATCTGGAAA 59.166 39.130 15.61 15.61 33.60 3.13
5187 5790 4.468510 ACATTTCATGGTGCATCTGGAAAT 59.531 37.500 17.94 17.94 35.89 2.17
5188 5791 5.657745 ACATTTCATGGTGCATCTGGAAATA 59.342 36.000 21.12 4.36 34.31 1.40
5189 5792 6.325545 ACATTTCATGGTGCATCTGGAAATAT 59.674 34.615 21.12 12.81 34.31 1.28
5190 5793 6.795144 TTTCATGGTGCATCTGGAAATATT 57.205 33.333 11.08 0.00 0.00 1.28
5191 5794 5.777850 TCATGGTGCATCTGGAAATATTG 57.222 39.130 0.00 0.00 0.00 1.90
5192 5795 5.447757 TCATGGTGCATCTGGAAATATTGA 58.552 37.500 0.00 0.00 0.00 2.57
5193 5796 6.072649 TCATGGTGCATCTGGAAATATTGAT 58.927 36.000 0.00 0.00 0.00 2.57
5194 5797 6.551975 TCATGGTGCATCTGGAAATATTGATT 59.448 34.615 0.00 0.00 0.00 2.57
5195 5798 6.795144 TGGTGCATCTGGAAATATTGATTT 57.205 33.333 0.00 0.00 38.00 2.17
5253 5856 8.276252 AGTTAGTCAAACTTTACAAAGCTTGA 57.724 30.769 13.75 13.75 46.61 3.02
5266 5869 3.801114 AAGCTTGACTTTGACCAAACC 57.199 42.857 0.00 0.00 33.71 3.27
5267 5870 3.018423 AGCTTGACTTTGACCAAACCT 57.982 42.857 0.00 0.00 0.00 3.50
5268 5871 3.365472 AGCTTGACTTTGACCAAACCTT 58.635 40.909 0.00 0.00 0.00 3.50
5269 5872 3.769300 AGCTTGACTTTGACCAAACCTTT 59.231 39.130 0.00 0.00 0.00 3.11
5270 5873 4.953579 AGCTTGACTTTGACCAAACCTTTA 59.046 37.500 0.00 0.00 0.00 1.85
5271 5874 5.598417 AGCTTGACTTTGACCAAACCTTTAT 59.402 36.000 0.00 0.00 0.00 1.40
5272 5875 6.775629 AGCTTGACTTTGACCAAACCTTTATA 59.224 34.615 0.00 0.00 0.00 0.98
5273 5876 7.451566 AGCTTGACTTTGACCAAACCTTTATAT 59.548 33.333 0.00 0.00 0.00 0.86
5274 5877 7.542130 GCTTGACTTTGACCAAACCTTTATATG 59.458 37.037 0.00 0.00 0.00 1.78
5275 5878 6.919721 TGACTTTGACCAAACCTTTATATGC 58.080 36.000 0.00 0.00 0.00 3.14
5276 5879 6.491745 TGACTTTGACCAAACCTTTATATGCA 59.508 34.615 0.00 0.00 0.00 3.96
5277 5880 6.924111 ACTTTGACCAAACCTTTATATGCAG 58.076 36.000 0.00 0.00 0.00 4.41
5278 5881 6.719370 ACTTTGACCAAACCTTTATATGCAGA 59.281 34.615 0.00 0.00 0.00 4.26
5279 5882 6.509418 TTGACCAAACCTTTATATGCAGAC 57.491 37.500 0.00 0.00 0.00 3.51
5280 5883 5.815581 TGACCAAACCTTTATATGCAGACT 58.184 37.500 0.00 0.00 0.00 3.24
5281 5884 6.953101 TGACCAAACCTTTATATGCAGACTA 58.047 36.000 0.00 0.00 0.00 2.59
5282 5885 7.398829 TGACCAAACCTTTATATGCAGACTAA 58.601 34.615 0.00 0.00 0.00 2.24
5283 5886 7.885922 TGACCAAACCTTTATATGCAGACTAAA 59.114 33.333 0.00 0.00 0.00 1.85
5284 5887 8.644374 ACCAAACCTTTATATGCAGACTAAAA 57.356 30.769 0.00 0.00 0.00 1.52
5285 5888 9.084533 ACCAAACCTTTATATGCAGACTAAAAA 57.915 29.630 0.00 0.00 0.00 1.94
5286 5889 9.573133 CCAAACCTTTATATGCAGACTAAAAAG 57.427 33.333 0.00 0.00 0.00 2.27
5291 5894 9.490663 CCTTTATATGCAGACTAAAAAGAAACG 57.509 33.333 0.00 0.00 0.00 3.60
5292 5895 9.490663 CTTTATATGCAGACTAAAAAGAAACGG 57.509 33.333 0.00 0.00 0.00 4.44
5293 5896 8.780846 TTATATGCAGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
5294 5897 5.613358 ATGCAGACTAAAAAGAAACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
5295 5898 3.813166 TGCAGACTAAAAAGAAACGGAGG 59.187 43.478 0.00 0.00 0.00 4.30
5296 5899 3.188667 GCAGACTAAAAAGAAACGGAGGG 59.811 47.826 0.00 0.00 0.00 4.30
5297 5900 4.638304 CAGACTAAAAAGAAACGGAGGGA 58.362 43.478 0.00 0.00 0.00 4.20
5367 5970 9.043548 ACTGTTTTGAGTATATAGGTTACTGGT 57.956 33.333 0.00 0.00 30.15 4.00
6140 6767 8.647796 TGACTTAGGACAATTCTAAGACTTCAA 58.352 33.333 15.64 0.00 43.72 2.69
6242 6869 6.370593 ACATGTATTCAGTTTGTTAGTTGCG 58.629 36.000 0.00 0.00 0.00 4.85
6367 6995 1.880027 ACCTCGTTCATTGTTTCAGCC 59.120 47.619 0.00 0.00 0.00 4.85
7111 7838 4.552355 CATGGCGATCATGCATACAAAAT 58.448 39.130 0.00 0.00 45.58 1.82
7185 7912 4.761739 TCCTTTTCATTTGCAGACTACCAG 59.238 41.667 0.00 0.00 0.00 4.00
7194 7921 0.529337 CAGACTACCAGATGCGCCTG 60.529 60.000 4.18 5.71 0.00 4.85
7493 8220 1.036707 CTCCACCCTCGAATCTCCTC 58.963 60.000 0.00 0.00 0.00 3.71
8072 8842 7.811117 TTATTCTCTTCTACTCTACTCTGGC 57.189 40.000 0.00 0.00 0.00 4.85
8136 8906 9.709495 ATCTGAAATTATATGCTCTCTCTGTTC 57.291 33.333 0.00 0.00 0.00 3.18
8137 8907 8.699130 TCTGAAATTATATGCTCTCTCTGTTCA 58.301 33.333 0.00 0.00 0.00 3.18
8138 8908 8.654230 TGAAATTATATGCTCTCTCTGTTCAC 57.346 34.615 0.00 0.00 0.00 3.18
8139 8909 8.481314 TGAAATTATATGCTCTCTCTGTTCACT 58.519 33.333 0.00 0.00 0.00 3.41
8140 8910 9.323985 GAAATTATATGCTCTCTCTGTTCACTT 57.676 33.333 0.00 0.00 0.00 3.16
8141 8911 9.678260 AAATTATATGCTCTCTCTGTTCACTTT 57.322 29.630 0.00 0.00 0.00 2.66
8142 8912 8.885494 ATTATATGCTCTCTCTGTTCACTTTC 57.115 34.615 0.00 0.00 0.00 2.62
8143 8913 4.613925 ATGCTCTCTCTGTTCACTTTCA 57.386 40.909 0.00 0.00 0.00 2.69
8144 8914 4.613925 TGCTCTCTCTGTTCACTTTCAT 57.386 40.909 0.00 0.00 0.00 2.57
8145 8915 5.728637 TGCTCTCTCTGTTCACTTTCATA 57.271 39.130 0.00 0.00 0.00 2.15
8146 8916 6.101650 TGCTCTCTCTGTTCACTTTCATAA 57.898 37.500 0.00 0.00 0.00 1.90
8147 8917 6.162079 TGCTCTCTCTGTTCACTTTCATAAG 58.838 40.000 0.00 0.00 37.40 1.73
8148 8918 6.015095 TGCTCTCTCTGTTCACTTTCATAAGA 60.015 38.462 0.00 0.00 35.30 2.10
8149 8919 6.310224 GCTCTCTCTGTTCACTTTCATAAGAC 59.690 42.308 0.00 0.00 35.30 3.01
8150 8920 6.692486 TCTCTCTGTTCACTTTCATAAGACC 58.308 40.000 0.00 0.00 35.30 3.85
8151 8921 6.495181 TCTCTCTGTTCACTTTCATAAGACCT 59.505 38.462 0.00 0.00 35.30 3.85
8152 8922 7.015682 TCTCTCTGTTCACTTTCATAAGACCTT 59.984 37.037 0.00 0.00 35.30 3.50
8153 8923 6.931281 TCTCTGTTCACTTTCATAAGACCTTG 59.069 38.462 0.00 0.00 35.30 3.61
8154 8924 6.826668 TCTGTTCACTTTCATAAGACCTTGA 58.173 36.000 0.00 0.00 35.30 3.02
8155 8925 7.279615 TCTGTTCACTTTCATAAGACCTTGAA 58.720 34.615 0.00 0.00 35.30 2.69
8156 8926 7.773224 TCTGTTCACTTTCATAAGACCTTGAAA 59.227 33.333 0.00 0.00 39.00 2.69
8157 8927 8.287439 TGTTCACTTTCATAAGACCTTGAAAA 57.713 30.769 0.00 0.00 40.31 2.29
8158 8928 8.188139 TGTTCACTTTCATAAGACCTTGAAAAC 58.812 33.333 0.00 0.00 40.31 2.43
8159 8929 7.873719 TCACTTTCATAAGACCTTGAAAACA 57.126 32.000 0.00 0.00 40.31 2.83
8160 8930 8.463930 TCACTTTCATAAGACCTTGAAAACAT 57.536 30.769 0.00 0.00 40.31 2.71
8161 8931 8.912988 TCACTTTCATAAGACCTTGAAAACATT 58.087 29.630 0.00 0.00 40.31 2.71
8162 8932 9.533253 CACTTTCATAAGACCTTGAAAACATTT 57.467 29.630 0.00 0.00 40.31 2.32
8163 8933 9.750125 ACTTTCATAAGACCTTGAAAACATTTC 57.250 29.630 0.00 0.00 40.31 2.17
8164 8934 9.748708 CTTTCATAAGACCTTGAAAACATTTCA 57.251 29.630 1.57 1.57 40.31 2.69
8165 8935 9.748708 TTTCATAAGACCTTGAAAACATTTCAG 57.251 29.630 5.75 0.00 38.52 3.02
8166 8936 8.690203 TCATAAGACCTTGAAAACATTTCAGA 57.310 30.769 5.75 0.00 0.00 3.27
8167 8937 8.567948 TCATAAGACCTTGAAAACATTTCAGAC 58.432 33.333 5.75 0.00 0.00 3.51
8168 8938 6.773976 AAGACCTTGAAAACATTTCAGACA 57.226 33.333 5.75 0.00 0.00 3.41
8169 8939 6.773976 AGACCTTGAAAACATTTCAGACAA 57.226 33.333 5.75 0.00 0.00 3.18
8170 8940 7.352079 AGACCTTGAAAACATTTCAGACAAT 57.648 32.000 5.75 0.00 0.00 2.71
8171 8941 7.205297 AGACCTTGAAAACATTTCAGACAATG 58.795 34.615 5.75 0.00 39.67 2.82
8173 8943 8.006298 ACCTTGAAAACATTTCAGACAATGTA 57.994 30.769 5.75 0.00 44.95 2.29
8174 8944 7.920682 ACCTTGAAAACATTTCAGACAATGTAC 59.079 33.333 5.75 0.00 44.95 2.90
8175 8945 7.920151 CCTTGAAAACATTTCAGACAATGTACA 59.080 33.333 0.00 0.00 44.95 2.90
8176 8946 9.299963 CTTGAAAACATTTCAGACAATGTACAA 57.700 29.630 0.00 12.90 44.95 2.41
8177 8947 9.645059 TTGAAAACATTTCAGACAATGTACAAA 57.355 25.926 0.00 0.00 44.95 2.83
8178 8948 9.645059 TGAAAACATTTCAGACAATGTACAAAA 57.355 25.926 0.00 0.00 44.95 2.44
8179 8949 9.900264 GAAAACATTTCAGACAATGTACAAAAC 57.100 29.630 0.00 0.00 44.95 2.43
8180 8950 8.994429 AAACATTTCAGACAATGTACAAAACA 57.006 26.923 0.00 0.00 44.95 2.83
8181 8951 8.994429 AACATTTCAGACAATGTACAAAACAA 57.006 26.923 0.00 0.00 44.95 2.83
8182 8952 8.406172 ACATTTCAGACAATGTACAAAACAAC 57.594 30.769 0.00 0.00 44.08 3.32
8183 8953 7.491048 ACATTTCAGACAATGTACAAAACAACC 59.509 33.333 0.00 0.00 44.08 3.77
8184 8954 5.508200 TCAGACAATGTACAAAACAACCC 57.492 39.130 0.00 0.00 42.70 4.11
8185 8955 4.950475 TCAGACAATGTACAAAACAACCCA 59.050 37.500 0.00 0.00 42.70 4.51
8186 8956 5.596361 TCAGACAATGTACAAAACAACCCAT 59.404 36.000 0.00 0.00 42.70 4.00
8187 8957 6.097554 TCAGACAATGTACAAAACAACCCATT 59.902 34.615 0.00 0.00 42.70 3.16
8188 8958 6.760770 CAGACAATGTACAAAACAACCCATTT 59.239 34.615 0.00 0.00 42.70 2.32
8189 8959 7.279758 CAGACAATGTACAAAACAACCCATTTT 59.720 33.333 0.00 0.00 42.70 1.82
8191 8961 7.106239 ACAATGTACAAAACAACCCATTTTGA 58.894 30.769 15.13 0.00 45.75 2.69
8192 8962 7.279758 ACAATGTACAAAACAACCCATTTTGAG 59.720 33.333 15.13 3.16 45.75 3.02
8193 8963 6.287589 TGTACAAAACAACCCATTTTGAGT 57.712 33.333 15.13 0.00 45.75 3.41
8194 8964 6.702329 TGTACAAAACAACCCATTTTGAGTT 58.298 32.000 15.13 0.00 45.75 3.01
8195 8965 6.591834 TGTACAAAACAACCCATTTTGAGTTG 59.408 34.615 15.13 3.42 45.75 3.16
8200 8970 4.916983 CAACCCATTTTGAGTTGTCTGA 57.083 40.909 0.00 0.00 36.87 3.27
8201 8971 5.261209 CAACCCATTTTGAGTTGTCTGAA 57.739 39.130 0.00 0.00 36.87 3.02
8202 8972 5.659463 CAACCCATTTTGAGTTGTCTGAAA 58.341 37.500 0.00 0.00 36.87 2.69
8203 8973 6.282930 CAACCCATTTTGAGTTGTCTGAAAT 58.717 36.000 0.00 0.00 36.87 2.17
8204 8974 5.846203 ACCCATTTTGAGTTGTCTGAAATG 58.154 37.500 0.00 0.00 37.04 2.32
8205 8975 5.598005 ACCCATTTTGAGTTGTCTGAAATGA 59.402 36.000 8.27 0.00 38.18 2.57
8206 8976 5.922544 CCCATTTTGAGTTGTCTGAAATGAC 59.077 40.000 8.27 0.00 38.18 3.06
8207 8977 6.239120 CCCATTTTGAGTTGTCTGAAATGACT 60.239 38.462 8.27 0.00 38.18 3.41
8208 8978 7.205297 CCATTTTGAGTTGTCTGAAATGACTT 58.795 34.615 8.27 0.00 38.18 3.01
8209 8979 8.352201 CCATTTTGAGTTGTCTGAAATGACTTA 58.648 33.333 8.27 0.00 38.18 2.24
8210 8980 9.173939 CATTTTGAGTTGTCTGAAATGACTTAC 57.826 33.333 0.00 0.00 38.18 2.34
8211 8981 7.857734 TTTGAGTTGTCTGAAATGACTTACA 57.142 32.000 0.00 0.00 37.79 2.41
8212 8982 7.857734 TTGAGTTGTCTGAAATGACTTACAA 57.142 32.000 0.00 0.00 37.79 2.41
8213 8983 7.857734 TGAGTTGTCTGAAATGACTTACAAA 57.142 32.000 0.00 0.00 37.79 2.83
8214 8984 8.275015 TGAGTTGTCTGAAATGACTTACAAAA 57.725 30.769 0.00 0.00 37.79 2.44
8215 8985 8.397906 TGAGTTGTCTGAAATGACTTACAAAAG 58.602 33.333 0.00 0.00 37.79 2.27
8217 8987 8.184192 AGTTGTCTGAAATGACTTACAAAAGTG 58.816 33.333 0.00 0.00 46.09 3.16
8218 8988 7.857734 TGTCTGAAATGACTTACAAAAGTGA 57.142 32.000 0.00 0.00 46.09 3.41
8219 8989 8.275015 TGTCTGAAATGACTTACAAAAGTGAA 57.725 30.769 0.00 0.00 46.09 3.18
8220 8990 8.181573 TGTCTGAAATGACTTACAAAAGTGAAC 58.818 33.333 0.00 0.00 46.09 3.18
8221 8991 7.373441 GTCTGAAATGACTTACAAAAGTGAACG 59.627 37.037 0.00 0.00 46.09 3.95
8222 8992 6.491394 TGAAATGACTTACAAAAGTGAACGG 58.509 36.000 0.00 0.00 46.09 4.44
8223 8993 6.316640 TGAAATGACTTACAAAAGTGAACGGA 59.683 34.615 0.00 0.00 46.09 4.69
8224 8994 5.924475 ATGACTTACAAAAGTGAACGGAG 57.076 39.130 0.00 0.00 46.09 4.63
8225 8995 4.124238 TGACTTACAAAAGTGAACGGAGG 58.876 43.478 0.00 0.00 46.09 4.30
8226 8996 3.473625 ACTTACAAAAGTGAACGGAGGG 58.526 45.455 0.00 0.00 44.40 4.30
8227 8997 3.135167 ACTTACAAAAGTGAACGGAGGGA 59.865 43.478 0.00 0.00 44.40 4.20
8228 8998 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
8233 9003 5.012354 ACAAAAGTGAACGGAGGGAGTAATA 59.988 40.000 0.00 0.00 0.00 0.98
8263 9033 6.455360 AAGATAATGTGATTCAATTGCCGT 57.545 33.333 0.00 0.00 0.00 5.68
8264 9034 6.455360 AGATAATGTGATTCAATTGCCGTT 57.545 33.333 0.00 0.00 0.00 4.44
8387 9157 4.341806 TGTTGATCAAGGCAGATTTTGTGT 59.658 37.500 8.80 0.00 0.00 3.72
8394 9164 1.000843 GGCAGATTTTGTGTGGTTCCC 59.999 52.381 0.00 0.00 0.00 3.97
8401 9171 5.425217 AGATTTTGTGTGGTTCCCTTTTTCT 59.575 36.000 0.00 0.00 0.00 2.52
8495 9330 1.389106 GCGACATGTGACCTAACGAAC 59.611 52.381 1.15 0.00 0.00 3.95
8508 9343 1.795768 AACGAACGATGTGACTGCAT 58.204 45.000 0.14 0.00 0.00 3.96
8511 9346 1.929169 CGAACGATGTGACTGCATGAT 59.071 47.619 0.00 0.00 0.00 2.45
8513 9348 3.181178 CGAACGATGTGACTGCATGATAG 59.819 47.826 0.00 0.00 0.00 2.08
8520 9355 2.353889 GTGACTGCATGATAGCACCTTG 59.646 50.000 0.00 0.00 40.11 3.61
8571 9406 0.539438 GGCTGGTCAAACCACATGGA 60.539 55.000 4.53 0.00 44.79 3.41
8627 9462 3.138304 CGACCCAACATCTTCAACAAGA 58.862 45.455 0.00 0.00 43.06 3.02
8632 9467 6.888105 ACCCAACATCTTCAACAAGAAAAAT 58.112 32.000 0.00 0.00 42.14 1.82
8654 9489 1.285641 GTGTGGACATTGGCGTTGG 59.714 57.895 0.00 0.00 0.00 3.77
8661 9496 3.055719 ATTGGCGTTGGCTGACCG 61.056 61.111 0.00 0.00 39.70 4.79
8689 9524 5.238650 CAGAAGGTTAAATCACGTGTTTCCT 59.761 40.000 16.51 12.98 0.00 3.36
8750 9585 2.616330 CGCCGCACCATCACAAACT 61.616 57.895 0.00 0.00 0.00 2.66
8762 9597 6.655003 CACCATCACAAACTATTGGTCTAGTT 59.345 38.462 0.00 0.00 42.36 2.24
8769 9604 8.621286 CACAAACTATTGGTCTAGTTCAAAAGT 58.379 33.333 5.04 0.00 40.25 2.66
8785 9620 9.057089 AGTTCAAAAGTTAGAAATGAATCGAGT 57.943 29.630 0.00 0.00 33.12 4.18
8822 9657 7.483580 TGTTGAACTTTAAGGGAAGGAAAAA 57.516 32.000 0.00 0.00 0.00 1.94
8854 9689 6.676950 TCATTGTTATGCTCAACGACATTTT 58.323 32.000 0.00 0.00 0.00 1.82
8904 9740 1.340399 CCTAGATGGTGGCCAGAGCA 61.340 60.000 5.11 0.00 42.56 4.26
8918 9754 0.182775 AGAGCAAACGGTTGTTCCCT 59.817 50.000 24.16 8.55 43.84 4.20
8925 9761 1.053424 ACGGTTGTTCCCTCAGCTAA 58.947 50.000 0.00 0.00 0.00 3.09
8968 9804 0.394216 CATGCGTTCCCTCCCAATGA 60.394 55.000 0.00 0.00 0.00 2.57
9036 9872 1.359130 CCTTTCCCCCTCCTCAACAAT 59.641 52.381 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.180017 CCATGCACCTCGCTTTGC 59.820 61.111 0.00 0.00 43.06 3.68
20 21 6.775594 AATATTTCTACTGCCCTTGAAACC 57.224 37.500 0.00 0.00 32.32 3.27
21 22 8.736244 TGTAAATATTTCTACTGCCCTTGAAAC 58.264 33.333 3.39 0.00 32.32 2.78
25 26 7.556275 TCCTTGTAAATATTTCTACTGCCCTTG 59.444 37.037 3.39 0.00 0.00 3.61
32 33 9.367444 CGTGTTCTCCTTGTAAATATTTCTACT 57.633 33.333 3.39 0.00 0.00 2.57
50 51 2.229062 TCATCCACTGACTCGTGTTCTC 59.771 50.000 0.00 0.00 33.07 2.87
51 52 2.230025 CTCATCCACTGACTCGTGTTCT 59.770 50.000 0.00 0.00 33.07 3.01
52 53 2.029828 ACTCATCCACTGACTCGTGTTC 60.030 50.000 0.00 0.00 33.07 3.18
58 59 3.667497 TGTCAACTCATCCACTGACTC 57.333 47.619 3.06 0.00 39.15 3.36
63 64 1.352017 TGGCATGTCAACTCATCCACT 59.648 47.619 0.00 0.00 0.00 4.00
72 73 4.802039 CAGCTTATCAATTGGCATGTCAAC 59.198 41.667 16.33 0.00 0.00 3.18
74 75 3.181484 GCAGCTTATCAATTGGCATGTCA 60.181 43.478 5.42 0.00 0.00 3.58
92 93 1.889170 AGTTTTCCTAAAGCTGGCAGC 59.111 47.619 31.56 31.56 42.84 5.25
93 94 5.904362 ATAAGTTTTCCTAAAGCTGGCAG 57.096 39.130 10.94 10.94 31.98 4.85
97 98 8.946085 TGTCACATATAAGTTTTCCTAAAGCTG 58.054 33.333 0.00 0.00 31.98 4.24
105 106 7.770897 ACTCCAGATGTCACATATAAGTTTTCC 59.229 37.037 0.00 0.00 0.00 3.13
106 107 8.723942 ACTCCAGATGTCACATATAAGTTTTC 57.276 34.615 0.00 0.00 0.00 2.29
121 122 5.892348 AGGGAATGTTTTTACTCCAGATGT 58.108 37.500 0.00 0.00 0.00 3.06
125 126 5.393461 GCATGAGGGAATGTTTTTACTCCAG 60.393 44.000 0.00 0.00 0.00 3.86
136 137 7.289782 GGATATCTAGATAGCATGAGGGAATGT 59.710 40.741 25.18 1.99 31.70 2.71
138 139 6.786959 GGGATATCTAGATAGCATGAGGGAAT 59.213 42.308 25.18 3.51 31.70 3.01
149 150 8.877864 ACAAGACAAGAGGGATATCTAGATAG 57.122 38.462 17.22 4.56 0.00 2.08
151 152 9.661954 TTAACAAGACAAGAGGGATATCTAGAT 57.338 33.333 10.73 10.73 0.00 1.98
152 153 9.488762 TTTAACAAGACAAGAGGGATATCTAGA 57.511 33.333 2.05 0.00 0.00 2.43
153 154 9.757227 CTTTAACAAGACAAGAGGGATATCTAG 57.243 37.037 2.05 0.00 30.57 2.43
166 174 4.873827 AGAACGACAGCTTTAACAAGACAA 59.126 37.500 0.00 0.00 30.57 3.18
167 175 4.439057 AGAACGACAGCTTTAACAAGACA 58.561 39.130 0.00 0.00 30.57 3.41
172 180 5.190992 TGTCTAGAACGACAGCTTTAACA 57.809 39.130 0.00 0.00 38.89 2.41
181 189 4.705507 AGCCTTATCTTGTCTAGAACGACA 59.294 41.667 0.00 0.00 41.82 4.35
183 191 7.094075 TGTTTAGCCTTATCTTGTCTAGAACGA 60.094 37.037 0.00 0.00 36.22 3.85
201 209 9.908152 ACTAGTCACAAATTTTAATGTTTAGCC 57.092 29.630 0.00 0.00 0.00 3.93
303 311 9.621629 TCATTAACTATTTATGGAATCCAACGT 57.378 29.630 5.89 0.00 36.95 3.99
383 399 9.512588 GATCCATTCTCATGTAATAATGGACTT 57.487 33.333 23.36 15.20 39.43 3.01
493 513 2.293399 GCCAAAACGTGATCTTTCTGGT 59.707 45.455 0.00 0.00 0.00 4.00
601 622 3.868200 GAACCTGTGTGGGGCCCAG 62.868 68.421 29.66 17.08 41.11 4.45
615 636 3.217626 CCTGCCTCTATTGATTGGAACC 58.782 50.000 0.00 0.00 0.00 3.62
1293 1338 4.096003 CCCGTGATGGCCTCCGTT 62.096 66.667 3.32 0.00 35.87 4.44
1398 1443 3.535962 CAGAGCTCGAGGCCTCCC 61.536 72.222 27.20 15.16 43.05 4.30
1404 1449 2.837291 CCCTCCCAGAGCTCGAGG 60.837 72.222 22.62 22.62 42.48 4.63
1551 1596 4.216902 GCCCTAATAACGACCAAACAAAGT 59.783 41.667 0.00 0.00 0.00 2.66
1583 1628 2.802787 AAGGATCCTAGCGTCGATTG 57.197 50.000 16.55 0.00 0.00 2.67
1778 1823 3.211045 CCTCTAGTCCTACAGCTCAGAC 58.789 54.545 0.00 0.00 0.00 3.51
1820 1865 4.444449 GGAATCATACACCCTAACCCAGAC 60.444 50.000 0.00 0.00 0.00 3.51
1828 1873 4.202461 GCCATTGAGGAATCATACACCCTA 60.202 45.833 0.00 0.00 41.22 3.53
1832 1877 3.466836 TCGCCATTGAGGAATCATACAC 58.533 45.455 0.00 0.00 41.22 2.90
1850 1897 0.319900 TTCTTGACTGAGCACCTCGC 60.320 55.000 0.00 0.00 42.91 5.03
1940 1987 3.732048 AATCCCTCCACCGTAACAAAT 57.268 42.857 0.00 0.00 0.00 2.32
2036 2083 8.902806 TCACACCCAACATTTCATAGAAATATC 58.097 33.333 4.81 0.00 0.00 1.63
2043 2090 5.703978 TTGTCACACCCAACATTTCATAG 57.296 39.130 0.00 0.00 0.00 2.23
2305 2352 1.800805 GGCATCCCATGACTACATCG 58.199 55.000 0.00 0.00 34.69 3.84
2577 2762 6.633856 AGAATCTGAAGTTTTGCAAACAAGT 58.366 32.000 12.39 0.00 37.04 3.16
2711 2913 0.332632 TCCCAAGGGAATGCAGGAAG 59.667 55.000 5.09 0.00 42.05 3.46
3181 3673 3.552684 GCAGGCAAAACATAAAGAGCACA 60.553 43.478 0.00 0.00 0.00 4.57
3341 3833 5.702209 CAGCATAAAGGCCTGAAAAATGTTT 59.298 36.000 5.69 0.00 0.00 2.83
3973 4496 9.906660 TTAAACATCAGCTACCAAACTTTTATG 57.093 29.630 0.00 0.00 0.00 1.90
4068 4591 1.315257 ATTCAGAATGTGCGTGGGGC 61.315 55.000 0.00 0.00 37.40 5.80
4069 4592 1.176527 AATTCAGAATGTGCGTGGGG 58.823 50.000 0.00 0.00 37.40 4.96
4070 4593 3.793129 GCATAATTCAGAATGTGCGTGGG 60.793 47.826 14.63 0.00 37.40 4.61
4071 4594 3.065786 AGCATAATTCAGAATGTGCGTGG 59.934 43.478 20.10 1.51 37.97 4.94
4330 4855 8.751242 ACTTCTAAACTAGATCAAGTACTTCCC 58.249 37.037 4.77 0.00 34.22 3.97
4377 4902 4.826183 ACGGAGGGAGTAGTACATAATGAC 59.174 45.833 2.52 0.00 0.00 3.06
4450 4975 6.374333 GTCCCAAAATAAGTGACTCAGCATTA 59.626 38.462 0.00 0.00 0.00 1.90
4546 5130 6.285224 TCCGTTGTGAAAAATAAGTCAGAGA 58.715 36.000 0.00 0.00 0.00 3.10
4547 5131 6.423905 TCTCCGTTGTGAAAAATAAGTCAGAG 59.576 38.462 0.00 0.00 0.00 3.35
4592 5176 3.119173 CCAGCCTCAAAACAACTGAAACA 60.119 43.478 0.00 0.00 0.00 2.83
4625 5209 3.063997 GGTGCAATCATCAGTTTAGACGG 59.936 47.826 0.00 0.00 0.00 4.79
4660 5244 6.176183 ACACAGAATTGCTTAGACTGCTTAT 58.824 36.000 0.00 0.00 32.67 1.73
5038 5641 5.545588 AGTAAAAAGAAACGGAGGGAGTAC 58.454 41.667 0.00 0.00 0.00 2.73
5039 5642 5.279657 GGAGTAAAAAGAAACGGAGGGAGTA 60.280 44.000 0.00 0.00 0.00 2.59
5040 5643 4.504514 GGAGTAAAAAGAAACGGAGGGAGT 60.505 45.833 0.00 0.00 0.00 3.85
5041 5644 4.001652 GGAGTAAAAAGAAACGGAGGGAG 58.998 47.826 0.00 0.00 0.00 4.30
5042 5645 3.555586 CGGAGTAAAAAGAAACGGAGGGA 60.556 47.826 0.00 0.00 0.00 4.20
5043 5646 2.740447 CGGAGTAAAAAGAAACGGAGGG 59.260 50.000 0.00 0.00 0.00 4.30
5044 5647 2.159037 GCGGAGTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30
5045 5648 2.159881 CGCGGAGTAAAAAGAAACGGAG 60.160 50.000 0.00 0.00 0.00 4.63
5046 5649 1.794116 CGCGGAGTAAAAAGAAACGGA 59.206 47.619 0.00 0.00 0.00 4.69
5047 5650 1.528161 ACGCGGAGTAAAAAGAAACGG 59.472 47.619 12.47 0.00 0.00 4.44
5048 5651 2.936050 ACGCGGAGTAAAAAGAAACG 57.064 45.000 12.47 0.00 0.00 3.60
5049 5652 7.053710 ACTTATACGCGGAGTAAAAAGAAAC 57.946 36.000 12.47 0.00 39.04 2.78
5050 5653 7.656707 AACTTATACGCGGAGTAAAAAGAAA 57.343 32.000 12.47 0.00 39.04 2.52
5051 5654 7.656707 AAACTTATACGCGGAGTAAAAAGAA 57.343 32.000 12.47 1.31 39.04 2.52
5052 5655 7.360269 CCAAAACTTATACGCGGAGTAAAAAGA 60.360 37.037 12.47 0.00 39.04 2.52
5053 5656 6.739550 CCAAAACTTATACGCGGAGTAAAAAG 59.260 38.462 12.47 4.87 39.04 2.27
5054 5657 6.204495 ACCAAAACTTATACGCGGAGTAAAAA 59.796 34.615 12.47 0.00 39.04 1.94
5055 5658 5.700373 ACCAAAACTTATACGCGGAGTAAAA 59.300 36.000 12.47 0.00 39.04 1.52
5056 5659 5.237048 ACCAAAACTTATACGCGGAGTAAA 58.763 37.500 12.47 0.00 39.04 2.01
5057 5660 4.819769 ACCAAAACTTATACGCGGAGTAA 58.180 39.130 12.47 5.50 39.04 2.24
5058 5661 4.082300 TGACCAAAACTTATACGCGGAGTA 60.082 41.667 12.47 0.00 40.03 2.59
5059 5662 3.256558 GACCAAAACTTATACGCGGAGT 58.743 45.455 12.47 5.94 0.00 3.85
5060 5663 3.255725 TGACCAAAACTTATACGCGGAG 58.744 45.455 12.47 5.24 0.00 4.63
5061 5664 3.316071 TGACCAAAACTTATACGCGGA 57.684 42.857 12.47 0.00 0.00 5.54
5062 5665 4.083696 ACTTTGACCAAAACTTATACGCGG 60.084 41.667 12.47 0.00 0.00 6.46
5063 5666 5.025986 ACTTTGACCAAAACTTATACGCG 57.974 39.130 3.53 3.53 0.00 6.01
5064 5667 5.992729 TGACTTTGACCAAAACTTATACGC 58.007 37.500 0.00 0.00 0.00 4.42
5065 5668 8.126700 AGTTTGACTTTGACCAAAACTTATACG 58.873 33.333 0.00 0.00 34.52 3.06
5068 5671 8.962679 TGTAGTTTGACTTTGACCAAAACTTAT 58.037 29.630 4.61 0.00 34.52 1.73
5069 5672 8.238631 GTGTAGTTTGACTTTGACCAAAACTTA 58.761 33.333 4.61 0.00 34.52 2.24
5070 5673 7.088272 GTGTAGTTTGACTTTGACCAAAACTT 58.912 34.615 4.61 0.00 34.52 2.66
5071 5674 6.207810 TGTGTAGTTTGACTTTGACCAAAACT 59.792 34.615 4.69 4.69 34.52 2.66
5072 5675 6.383415 TGTGTAGTTTGACTTTGACCAAAAC 58.617 36.000 0.00 0.00 34.52 2.43
5073 5676 6.576662 TGTGTAGTTTGACTTTGACCAAAA 57.423 33.333 0.00 0.00 34.52 2.44
5074 5677 6.576662 TTGTGTAGTTTGACTTTGACCAAA 57.423 33.333 0.00 0.00 0.00 3.28
5075 5678 6.207810 ACTTTGTGTAGTTTGACTTTGACCAA 59.792 34.615 0.00 0.00 0.00 3.67
5076 5679 5.708230 ACTTTGTGTAGTTTGACTTTGACCA 59.292 36.000 0.00 0.00 0.00 4.02
5077 5680 6.190954 ACTTTGTGTAGTTTGACTTTGACC 57.809 37.500 0.00 0.00 0.00 4.02
5087 5690 8.840833 AAATTTGGTCAAACTTTGTGTAGTTT 57.159 26.923 1.44 0.00 46.42 2.66
5158 5761 6.477688 CCAGATGCACCATGAAATGTATTTTC 59.522 38.462 0.00 0.00 44.81 2.29
5159 5762 6.154877 TCCAGATGCACCATGAAATGTATTTT 59.845 34.615 0.00 0.00 44.81 1.82
5160 5763 5.657745 TCCAGATGCACCATGAAATGTATTT 59.342 36.000 0.00 0.00 44.81 1.40
5161 5764 5.202765 TCCAGATGCACCATGAAATGTATT 58.797 37.500 0.00 0.00 44.81 1.89
5162 5765 4.795469 TCCAGATGCACCATGAAATGTAT 58.205 39.130 0.00 0.00 44.81 2.29
5163 5766 4.233632 TCCAGATGCACCATGAAATGTA 57.766 40.909 0.00 0.00 44.81 2.29
5164 5767 3.090210 TCCAGATGCACCATGAAATGT 57.910 42.857 0.00 0.00 44.81 2.71
5165 5768 4.459390 TTTCCAGATGCACCATGAAATG 57.541 40.909 0.00 0.00 46.21 2.32
5166 5769 6.989155 ATATTTCCAGATGCACCATGAAAT 57.011 33.333 15.87 15.87 36.63 2.17
5167 5770 6.380560 TCAATATTTCCAGATGCACCATGAAA 59.619 34.615 0.00 0.00 0.00 2.69
5168 5771 5.892686 TCAATATTTCCAGATGCACCATGAA 59.107 36.000 0.00 0.00 0.00 2.57
5169 5772 5.447757 TCAATATTTCCAGATGCACCATGA 58.552 37.500 0.00 0.00 0.00 3.07
5170 5773 5.777850 TCAATATTTCCAGATGCACCATG 57.222 39.130 0.00 0.00 0.00 3.66
5171 5774 6.989155 AATCAATATTTCCAGATGCACCAT 57.011 33.333 0.00 0.00 0.00 3.55
5172 5775 6.795144 AAATCAATATTTCCAGATGCACCA 57.205 33.333 0.00 0.00 28.88 4.17
5246 5849 3.365472 AGGTTTGGTCAAAGTCAAGCTT 58.635 40.909 0.00 0.00 39.52 3.74
5247 5850 3.018423 AGGTTTGGTCAAAGTCAAGCT 57.982 42.857 0.00 0.00 0.00 3.74
5248 5851 3.801114 AAGGTTTGGTCAAAGTCAAGC 57.199 42.857 0.00 0.00 0.00 4.01
5249 5852 7.542130 GCATATAAAGGTTTGGTCAAAGTCAAG 59.458 37.037 0.00 0.00 0.00 3.02
5250 5853 7.014711 TGCATATAAAGGTTTGGTCAAAGTCAA 59.985 33.333 0.00 0.00 0.00 3.18
5251 5854 6.491745 TGCATATAAAGGTTTGGTCAAAGTCA 59.508 34.615 0.00 0.00 0.00 3.41
5252 5855 6.919721 TGCATATAAAGGTTTGGTCAAAGTC 58.080 36.000 0.00 0.00 0.00 3.01
5253 5856 6.719370 TCTGCATATAAAGGTTTGGTCAAAGT 59.281 34.615 0.00 0.00 0.00 2.66
5254 5857 7.029563 GTCTGCATATAAAGGTTTGGTCAAAG 58.970 38.462 0.00 0.00 0.00 2.77
5255 5858 6.719370 AGTCTGCATATAAAGGTTTGGTCAAA 59.281 34.615 0.00 0.00 0.00 2.69
5256 5859 6.245408 AGTCTGCATATAAAGGTTTGGTCAA 58.755 36.000 0.00 0.00 0.00 3.18
5257 5860 5.815581 AGTCTGCATATAAAGGTTTGGTCA 58.184 37.500 0.00 0.00 0.00 4.02
5258 5861 7.859325 TTAGTCTGCATATAAAGGTTTGGTC 57.141 36.000 0.00 0.00 0.00 4.02
5259 5862 8.644374 TTTTAGTCTGCATATAAAGGTTTGGT 57.356 30.769 0.00 0.00 0.00 3.67
5260 5863 9.573133 CTTTTTAGTCTGCATATAAAGGTTTGG 57.427 33.333 0.00 0.00 0.00 3.28
5265 5868 9.490663 CGTTTCTTTTTAGTCTGCATATAAAGG 57.509 33.333 8.13 3.45 0.00 3.11
5266 5869 9.490663 CCGTTTCTTTTTAGTCTGCATATAAAG 57.509 33.333 0.00 0.00 0.00 1.85
5267 5870 9.221933 TCCGTTTCTTTTTAGTCTGCATATAAA 57.778 29.630 0.00 0.00 0.00 1.40
5268 5871 8.780846 TCCGTTTCTTTTTAGTCTGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
5269 5872 7.494625 CCTCCGTTTCTTTTTAGTCTGCATATA 59.505 37.037 0.00 0.00 0.00 0.86
5270 5873 6.316390 CCTCCGTTTCTTTTTAGTCTGCATAT 59.684 38.462 0.00 0.00 0.00 1.78
5271 5874 5.642063 CCTCCGTTTCTTTTTAGTCTGCATA 59.358 40.000 0.00 0.00 0.00 3.14
5272 5875 4.455877 CCTCCGTTTCTTTTTAGTCTGCAT 59.544 41.667 0.00 0.00 0.00 3.96
5273 5876 3.813166 CCTCCGTTTCTTTTTAGTCTGCA 59.187 43.478 0.00 0.00 0.00 4.41
5274 5877 3.188667 CCCTCCGTTTCTTTTTAGTCTGC 59.811 47.826 0.00 0.00 0.00 4.26
5275 5878 4.638304 TCCCTCCGTTTCTTTTTAGTCTG 58.362 43.478 0.00 0.00 0.00 3.51
5276 5879 4.347292 ACTCCCTCCGTTTCTTTTTAGTCT 59.653 41.667 0.00 0.00 0.00 3.24
5277 5880 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
5278 5881 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
5279 5882 7.011202 GCTAATACTCCCTCCGTTTCTTTTTAG 59.989 40.741 0.00 0.00 0.00 1.85
5280 5883 6.820152 GCTAATACTCCCTCCGTTTCTTTTTA 59.180 38.462 0.00 0.00 0.00 1.52
5281 5884 5.646793 GCTAATACTCCCTCCGTTTCTTTTT 59.353 40.000 0.00 0.00 0.00 1.94
5282 5885 5.183969 GCTAATACTCCCTCCGTTTCTTTT 58.816 41.667 0.00 0.00 0.00 2.27
5283 5886 4.224370 TGCTAATACTCCCTCCGTTTCTTT 59.776 41.667 0.00 0.00 0.00 2.52
5284 5887 3.773119 TGCTAATACTCCCTCCGTTTCTT 59.227 43.478 0.00 0.00 0.00 2.52
5285 5888 3.371965 TGCTAATACTCCCTCCGTTTCT 58.628 45.455 0.00 0.00 0.00 2.52
5286 5889 3.814005 TGCTAATACTCCCTCCGTTTC 57.186 47.619 0.00 0.00 0.00 2.78
5287 5890 3.181454 CCATGCTAATACTCCCTCCGTTT 60.181 47.826 0.00 0.00 0.00 3.60
5288 5891 2.368875 CCATGCTAATACTCCCTCCGTT 59.631 50.000 0.00 0.00 0.00 4.44
5289 5892 1.971357 CCATGCTAATACTCCCTCCGT 59.029 52.381 0.00 0.00 0.00 4.69
5290 5893 1.338200 GCCATGCTAATACTCCCTCCG 60.338 57.143 0.00 0.00 0.00 4.63
5291 5894 1.003696 GGCCATGCTAATACTCCCTCC 59.996 57.143 0.00 0.00 0.00 4.30
5292 5895 1.338200 CGGCCATGCTAATACTCCCTC 60.338 57.143 2.24 0.00 0.00 4.30
5293 5896 0.687354 CGGCCATGCTAATACTCCCT 59.313 55.000 2.24 0.00 0.00 4.20
5294 5897 0.396811 ACGGCCATGCTAATACTCCC 59.603 55.000 2.24 0.00 0.00 4.30
5295 5898 1.873591 CAACGGCCATGCTAATACTCC 59.126 52.381 2.24 0.00 0.00 3.85
5296 5899 2.561569 ACAACGGCCATGCTAATACTC 58.438 47.619 2.24 0.00 0.00 2.59
5297 5900 2.710096 ACAACGGCCATGCTAATACT 57.290 45.000 2.24 0.00 0.00 2.12
5367 5970 8.394121 GGCAACAAATTTATGTTTCAAGTGAAA 58.606 29.630 2.32 2.32 41.44 2.69
5519 6122 5.574970 AGGTCTGAAGTCCAAGAAAATCT 57.425 39.130 0.00 0.00 0.00 2.40
5567 6170 4.787260 TGACATTGTTGAATCCCATGTG 57.213 40.909 0.00 0.00 0.00 3.21
5860 6464 7.420184 TGCATGTATGATGGTCGTAAATAAG 57.580 36.000 0.00 0.00 0.00 1.73
5864 6468 6.317391 TGATTTGCATGTATGATGGTCGTAAA 59.683 34.615 0.00 0.00 0.00 2.01
6140 6767 9.014297 CAAGTACTCCCTCAGTTCAAAAATAAT 57.986 33.333 0.00 0.00 36.43 1.28
6242 6869 8.810652 TTGATGGAGTTTAACAAAATAACAGC 57.189 30.769 0.00 0.00 0.00 4.40
6330 6958 2.808543 GAGGTACAGTTTGAGCCAACAG 59.191 50.000 0.00 0.00 0.00 3.16
6593 7317 5.241728 ACAGCTCACCTTGAAGAAAATAACC 59.758 40.000 0.00 0.00 0.00 2.85
7136 7863 8.220755 TGTAAGATAGCATTCATAAACCAACC 57.779 34.615 0.00 0.00 0.00 3.77
7185 7912 2.877043 ATTTCCATTTCAGGCGCATC 57.123 45.000 10.83 0.00 0.00 3.91
7493 8220 4.641645 TGTGTGCCCCTGCCTTCG 62.642 66.667 0.00 0.00 36.33 3.79
7683 8410 2.254546 AAATCTGCTTCGTCACCACA 57.745 45.000 0.00 0.00 0.00 4.17
8064 8834 1.410850 GCCATAGCCCTGCCAGAGTA 61.411 60.000 0.00 0.00 0.00 2.59
8072 8842 3.118112 CCCTTCATATAGCCATAGCCCTG 60.118 52.174 0.00 0.00 41.25 4.45
8123 8893 4.613925 ATGAAAGTGAACAGAGAGAGCA 57.386 40.909 0.00 0.00 0.00 4.26
8124 8894 6.310224 GTCTTATGAAAGTGAACAGAGAGAGC 59.690 42.308 0.00 0.00 34.13 4.09
8125 8895 6.811170 GGTCTTATGAAAGTGAACAGAGAGAG 59.189 42.308 0.00 0.00 34.13 3.20
8126 8896 6.495181 AGGTCTTATGAAAGTGAACAGAGAGA 59.505 38.462 0.00 0.00 34.13 3.10
8127 8897 6.696411 AGGTCTTATGAAAGTGAACAGAGAG 58.304 40.000 0.00 0.00 34.13 3.20
8128 8898 6.672266 AGGTCTTATGAAAGTGAACAGAGA 57.328 37.500 0.00 0.00 34.13 3.10
8129 8899 6.931281 TCAAGGTCTTATGAAAGTGAACAGAG 59.069 38.462 0.00 0.00 34.13 3.35
8130 8900 6.826668 TCAAGGTCTTATGAAAGTGAACAGA 58.173 36.000 0.00 0.00 34.13 3.41
8131 8901 7.496529 TTCAAGGTCTTATGAAAGTGAACAG 57.503 36.000 0.00 0.00 32.89 3.16
8132 8902 7.873719 TTTCAAGGTCTTATGAAAGTGAACA 57.126 32.000 0.00 0.00 39.81 3.18
8133 8903 8.188139 TGTTTTCAAGGTCTTATGAAAGTGAAC 58.812 33.333 0.00 0.00 43.95 3.18
8134 8904 8.287439 TGTTTTCAAGGTCTTATGAAAGTGAA 57.713 30.769 0.00 0.00 43.95 3.18
8135 8905 7.873719 TGTTTTCAAGGTCTTATGAAAGTGA 57.126 32.000 0.00 0.00 43.95 3.41
8136 8906 9.533253 AAATGTTTTCAAGGTCTTATGAAAGTG 57.467 29.630 0.00 0.00 43.95 3.16
8137 8907 9.750125 GAAATGTTTTCAAGGTCTTATGAAAGT 57.250 29.630 0.00 0.00 43.95 2.66
8138 8908 9.748708 TGAAATGTTTTCAAGGTCTTATGAAAG 57.251 29.630 0.37 0.00 43.95 2.62
8139 8909 9.748708 CTGAAATGTTTTCAAGGTCTTATGAAA 57.251 29.630 4.43 0.00 42.17 2.69
8140 8910 9.130661 TCTGAAATGTTTTCAAGGTCTTATGAA 57.869 29.630 4.43 0.00 33.93 2.57
8141 8911 8.567948 GTCTGAAATGTTTTCAAGGTCTTATGA 58.432 33.333 4.43 0.00 0.00 2.15
8142 8912 8.352201 TGTCTGAAATGTTTTCAAGGTCTTATG 58.648 33.333 4.43 0.00 0.00 1.90
8143 8913 8.463930 TGTCTGAAATGTTTTCAAGGTCTTAT 57.536 30.769 4.43 0.00 0.00 1.73
8144 8914 7.873719 TGTCTGAAATGTTTTCAAGGTCTTA 57.126 32.000 4.43 0.00 0.00 2.10
8145 8915 6.773976 TGTCTGAAATGTTTTCAAGGTCTT 57.226 33.333 4.43 0.00 0.00 3.01
8146 8916 6.773976 TTGTCTGAAATGTTTTCAAGGTCT 57.226 33.333 4.43 0.00 0.00 3.85
8147 8917 6.980397 ACATTGTCTGAAATGTTTTCAAGGTC 59.020 34.615 10.41 0.00 46.19 3.85
8148 8918 6.877236 ACATTGTCTGAAATGTTTTCAAGGT 58.123 32.000 10.41 0.00 46.19 3.50
8149 8919 7.920151 TGTACATTGTCTGAAATGTTTTCAAGG 59.080 33.333 17.18 4.34 46.19 3.61
8150 8920 8.854979 TGTACATTGTCTGAAATGTTTTCAAG 57.145 30.769 17.18 0.45 46.19 3.02
8151 8921 9.645059 TTTGTACATTGTCTGAAATGTTTTCAA 57.355 25.926 17.18 16.10 46.19 2.69
8152 8922 9.645059 TTTTGTACATTGTCTGAAATGTTTTCA 57.355 25.926 17.18 2.96 46.19 2.69
8153 8923 9.900264 GTTTTGTACATTGTCTGAAATGTTTTC 57.100 29.630 17.18 11.68 46.19 2.29
8154 8924 9.429359 TGTTTTGTACATTGTCTGAAATGTTTT 57.571 25.926 17.18 3.31 46.19 2.43
8155 8925 8.994429 TGTTTTGTACATTGTCTGAAATGTTT 57.006 26.923 17.18 3.79 46.19 2.83
8156 8926 8.868916 GTTGTTTTGTACATTGTCTGAAATGTT 58.131 29.630 17.18 7.55 46.19 2.71
8158 8928 7.042791 GGGTTGTTTTGTACATTGTCTGAAATG 60.043 37.037 0.00 9.50 42.21 2.32
8159 8929 6.983890 GGGTTGTTTTGTACATTGTCTGAAAT 59.016 34.615 0.00 0.00 36.44 2.17
8160 8930 6.071334 TGGGTTGTTTTGTACATTGTCTGAAA 60.071 34.615 0.00 0.00 36.44 2.69
8161 8931 5.419155 TGGGTTGTTTTGTACATTGTCTGAA 59.581 36.000 0.00 0.00 36.44 3.02
8162 8932 4.950475 TGGGTTGTTTTGTACATTGTCTGA 59.050 37.500 0.00 0.00 36.44 3.27
8163 8933 5.255710 TGGGTTGTTTTGTACATTGTCTG 57.744 39.130 0.00 0.00 36.44 3.51
8164 8934 6.478512 AATGGGTTGTTTTGTACATTGTCT 57.521 33.333 0.00 0.00 36.44 3.41
8165 8935 7.278868 TCAAAATGGGTTGTTTTGTACATTGTC 59.721 33.333 0.00 0.00 43.52 3.18
8166 8936 7.106239 TCAAAATGGGTTGTTTTGTACATTGT 58.894 30.769 0.00 0.00 43.52 2.71
8167 8937 7.279758 ACTCAAAATGGGTTGTTTTGTACATTG 59.720 33.333 0.00 0.00 43.52 2.82
8168 8938 7.334858 ACTCAAAATGGGTTGTTTTGTACATT 58.665 30.769 0.00 0.00 43.52 2.71
8169 8939 6.883744 ACTCAAAATGGGTTGTTTTGTACAT 58.116 32.000 0.00 0.00 43.52 2.29
8170 8940 6.287589 ACTCAAAATGGGTTGTTTTGTACA 57.712 33.333 10.12 0.00 43.52 2.90
8180 8950 5.930837 TTTCAGACAACTCAAAATGGGTT 57.069 34.783 0.00 0.00 42.84 4.11
8181 8951 5.598005 TCATTTCAGACAACTCAAAATGGGT 59.402 36.000 0.00 0.00 37.16 4.51
8182 8952 5.922544 GTCATTTCAGACAACTCAAAATGGG 59.077 40.000 0.00 0.00 37.16 4.00
8183 8953 6.742109 AGTCATTTCAGACAACTCAAAATGG 58.258 36.000 0.00 0.00 40.98 3.16
8184 8954 9.173939 GTAAGTCATTTCAGACAACTCAAAATG 57.826 33.333 0.00 0.00 40.98 2.32
8185 8955 8.902806 TGTAAGTCATTTCAGACAACTCAAAAT 58.097 29.630 0.00 0.00 40.98 1.82
8186 8956 8.275015 TGTAAGTCATTTCAGACAACTCAAAA 57.725 30.769 0.00 0.00 40.98 2.44
8187 8957 7.857734 TGTAAGTCATTTCAGACAACTCAAA 57.142 32.000 0.00 0.00 40.98 2.69
8188 8958 7.857734 TTGTAAGTCATTTCAGACAACTCAA 57.142 32.000 0.00 0.00 40.98 3.02
8189 8959 7.857734 TTTGTAAGTCATTTCAGACAACTCA 57.142 32.000 0.00 0.00 40.98 3.41
8190 8960 8.398665 ACTTTTGTAAGTCATTTCAGACAACTC 58.601 33.333 0.00 0.00 40.60 3.01
8191 8961 8.184192 CACTTTTGTAAGTCATTTCAGACAACT 58.816 33.333 0.00 0.00 42.67 3.16
8192 8962 8.181573 TCACTTTTGTAAGTCATTTCAGACAAC 58.818 33.333 0.00 0.00 42.67 3.32
8193 8963 8.275015 TCACTTTTGTAAGTCATTTCAGACAA 57.725 30.769 0.00 0.00 42.67 3.18
8194 8964 7.857734 TCACTTTTGTAAGTCATTTCAGACA 57.142 32.000 0.00 0.00 42.67 3.41
8195 8965 7.373441 CGTTCACTTTTGTAAGTCATTTCAGAC 59.627 37.037 0.00 0.00 42.67 3.51
8196 8966 7.406553 CGTTCACTTTTGTAAGTCATTTCAGA 58.593 34.615 0.00 0.00 42.67 3.27
8197 8967 6.632834 CCGTTCACTTTTGTAAGTCATTTCAG 59.367 38.462 0.00 0.00 42.67 3.02
8198 8968 6.316640 TCCGTTCACTTTTGTAAGTCATTTCA 59.683 34.615 0.00 0.00 42.67 2.69
8199 8969 6.721321 TCCGTTCACTTTTGTAAGTCATTTC 58.279 36.000 0.00 0.00 42.67 2.17
8200 8970 6.238648 CCTCCGTTCACTTTTGTAAGTCATTT 60.239 38.462 0.00 0.00 42.67 2.32
8201 8971 5.238650 CCTCCGTTCACTTTTGTAAGTCATT 59.761 40.000 0.00 0.00 42.67 2.57
8202 8972 4.755123 CCTCCGTTCACTTTTGTAAGTCAT 59.245 41.667 0.00 0.00 42.67 3.06
8203 8973 4.124238 CCTCCGTTCACTTTTGTAAGTCA 58.876 43.478 0.00 0.00 42.67 3.41
8204 8974 3.497262 CCCTCCGTTCACTTTTGTAAGTC 59.503 47.826 0.00 0.00 42.67 3.01
8205 8975 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
8206 8976 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
8207 8977 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
8208 8978 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
8209 8979 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
8210 8980 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
8211 8981 4.635699 ATTACTCCCTCCGTTCACTTTT 57.364 40.909 0.00 0.00 0.00 2.27
8212 8982 5.952347 ATATTACTCCCTCCGTTCACTTT 57.048 39.130 0.00 0.00 0.00 2.66
8213 8983 5.952347 AATATTACTCCCTCCGTTCACTT 57.048 39.130 0.00 0.00 0.00 3.16
8214 8984 5.189145 ACAAATATTACTCCCTCCGTTCACT 59.811 40.000 0.00 0.00 0.00 3.41
8215 8985 5.425630 ACAAATATTACTCCCTCCGTTCAC 58.574 41.667 0.00 0.00 0.00 3.18
8216 8986 5.687166 ACAAATATTACTCCCTCCGTTCA 57.313 39.130 0.00 0.00 0.00 3.18
8217 8987 7.983484 TCTTAACAAATATTACTCCCTCCGTTC 59.017 37.037 0.00 0.00 0.00 3.95
8218 8988 7.854337 TCTTAACAAATATTACTCCCTCCGTT 58.146 34.615 0.00 0.00 0.00 4.44
8219 8989 7.427989 TCTTAACAAATATTACTCCCTCCGT 57.572 36.000 0.00 0.00 0.00 4.69
8220 8990 9.991906 TTATCTTAACAAATATTACTCCCTCCG 57.008 33.333 0.00 0.00 0.00 4.63
8495 9330 2.220363 GTGCTATCATGCAGTCACATCG 59.780 50.000 0.00 0.00 44.20 3.84
8508 9343 4.842531 TTCCATCTTCAAGGTGCTATCA 57.157 40.909 0.00 0.00 0.00 2.15
8511 9346 4.842531 TGATTCCATCTTCAAGGTGCTA 57.157 40.909 0.00 0.00 0.00 3.49
8513 9348 3.067742 CCATGATTCCATCTTCAAGGTGC 59.932 47.826 0.00 0.00 0.00 5.01
8520 9355 2.547211 CGTGAGCCATGATTCCATCTTC 59.453 50.000 0.00 0.00 0.00 2.87
8534 9369 0.447801 CCAACATTAGCACGTGAGCC 59.552 55.000 22.23 0.78 34.23 4.70
8541 9376 1.533625 TGACCAGCCAACATTAGCAC 58.466 50.000 0.00 0.00 0.00 4.40
8571 9406 2.557869 TGGTGATAGCCCTAGGTTTGT 58.442 47.619 8.29 0.00 0.00 2.83
8627 9462 4.317488 GCCAATGTCCACACATCATTTTT 58.683 39.130 0.00 0.00 42.89 1.94
8632 9467 0.250684 ACGCCAATGTCCACACATCA 60.251 50.000 0.00 0.00 42.89 3.07
8661 9496 3.125316 CACGTGATTTAACCTTCTGGCTC 59.875 47.826 10.90 0.00 36.63 4.70
8689 9524 4.382040 CCTCGAAACTGCATTTCCTCTAGA 60.382 45.833 12.83 0.00 43.40 2.43
8706 9541 1.640428 GATGCGACACAATCCTCGAA 58.360 50.000 0.00 0.00 31.24 3.71
8736 9571 3.758554 AGACCAATAGTTTGTGATGGTGC 59.241 43.478 0.00 0.00 44.12 5.01
8742 9577 8.740123 TTTTGAACTAGACCAATAGTTTGTGA 57.260 30.769 0.00 0.00 44.16 3.58
8771 9606 7.557719 ACCCAAATCATAACTCGATTCATTTCT 59.442 33.333 0.00 0.00 31.90 2.52
8773 9608 7.645058 ACCCAAATCATAACTCGATTCATTT 57.355 32.000 0.00 0.00 31.90 2.32
8784 9619 9.535878 TTAAAGTTCAACAACCCAAATCATAAC 57.464 29.630 0.00 0.00 32.22 1.89
8785 9620 9.757227 CTTAAAGTTCAACAACCCAAATCATAA 57.243 29.630 0.00 0.00 32.22 1.90
8822 9657 9.325198 TCGTTGAGCATAACAATGAATAAGTAT 57.675 29.630 0.00 0.00 0.00 2.12
8830 9665 5.878332 AATGTCGTTGAGCATAACAATGA 57.122 34.783 0.00 0.00 0.00 2.57
8904 9740 0.182775 AGCTGAGGGAACAACCGTTT 59.817 50.000 0.00 0.00 40.11 3.60
8918 9754 1.269361 TGCTCGTTTGACGTTAGCTGA 60.269 47.619 13.02 0.00 40.63 4.26
8925 9761 1.000884 TTCGTTTGCTCGTTTGACGT 58.999 45.000 0.00 0.00 43.14 4.34
8968 9804 1.668151 GAGCGTTCGCTTGGAAGGT 60.668 57.895 20.26 0.00 42.08 3.50
9050 9886 5.655532 AGCATGGCAATTTCTCTTTGATAGT 59.344 36.000 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.