Multiple sequence alignment - TraesCS5A01G207200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G207200 chr5A 100.000 3032 0 0 1 3032 417905165 417908196 0.000000e+00 5600.0
1 TraesCS5A01G207200 chr5A 93.011 2461 103 21 611 3032 540625174 540622744 0.000000e+00 3528.0
2 TraesCS5A01G207200 chr1D 95.022 2451 69 10 615 3032 316243968 316241538 0.000000e+00 3801.0
3 TraesCS5A01G207200 chr4D 94.859 2451 74 9 615 3032 491381490 491383921 0.000000e+00 3781.0
4 TraesCS5A01G207200 chr4A 94.842 2443 82 8 615 3032 731637348 731634925 0.000000e+00 3773.0
5 TraesCS5A01G207200 chr4A 94.830 2437 66 9 615 3032 478227133 478229528 0.000000e+00 3747.0
6 TraesCS5A01G207200 chr3D 94.778 2451 76 8 615 3032 334133 336564 0.000000e+00 3770.0
7 TraesCS5A01G207200 chr5D 94.797 2441 75 13 614 3032 552029046 552026636 0.000000e+00 3757.0
8 TraesCS5A01G207200 chr5D 94.295 2454 79 14 614 3032 78602935 78600508 0.000000e+00 3699.0
9 TraesCS5A01G207200 chr5D 96.027 2064 61 6 615 2675 555413536 555415581 0.000000e+00 3338.0
10 TraesCS5A01G207200 chr5D 94.867 1578 39 5 1484 3032 333089982 333091546 0.000000e+00 2427.0
11 TraesCS5A01G207200 chr5D 83.425 181 7 9 1 170 322391128 322390960 2.440000e-31 147.0
12 TraesCS5A01G207200 chr2D 94.540 2454 79 8 615 3032 130079133 130076699 0.000000e+00 3738.0
13 TraesCS5A01G207200 chr2D 94.494 2452 82 10 614 3032 617340744 617343175 0.000000e+00 3731.0
14 TraesCS5A01G207200 chr6D 94.481 2446 88 9 615 3032 420171217 420173643 0.000000e+00 3725.0
15 TraesCS5A01G207200 chr7D 93.888 2454 77 14 615 3032 586698690 586696274 0.000000e+00 3633.0
16 TraesCS5A01G207200 chr1A 93.627 2448 97 19 615 3032 77263366 77265784 0.000000e+00 3602.0
17 TraesCS5A01G207200 chr1A 92.478 2446 112 20 614 3032 25271007 25268607 0.000000e+00 3432.0
18 TraesCS5A01G207200 chr1A 92.026 464 18 5 2588 3032 405513648 405513185 4.260000e-178 634.0
19 TraesCS5A01G207200 chr6A 93.219 2448 108 16 615 3032 587986824 587984405 0.000000e+00 3548.0
20 TraesCS5A01G207200 chr6A 97.436 39 1 0 167 205 324284874 324284912 1.950000e-07 67.6
21 TraesCS5A01G207200 chr3A 93.222 2449 88 23 615 3032 693613629 693611228 0.000000e+00 3531.0
22 TraesCS5A01G207200 chr7B 91.065 2395 160 20 615 2986 672859561 672857198 0.000000e+00 3188.0
23 TraesCS5A01G207200 chr7B 90.476 42 4 0 167 208 728507262 728507221 4.220000e-04 56.5
24 TraesCS5A01G207200 chr7A 93.462 1652 64 13 1403 3032 70256082 70254453 0.000000e+00 2412.0
25 TraesCS5A01G207200 chr5B 85.256 156 8 5 7 162 373691540 373691400 2.440000e-31 147.0
26 TraesCS5A01G207200 chr6B 92.857 42 3 0 167 208 504133658 504133617 9.080000e-06 62.1
27 TraesCS5A01G207200 chr6B 92.683 41 3 0 168 208 134207860 134207900 3.260000e-05 60.2
28 TraesCS5A01G207200 chr6B 89.130 46 3 1 167 210 681236452 681236497 4.220000e-04 56.5
29 TraesCS5A01G207200 chr4B 94.737 38 2 0 171 208 647757401 647757438 3.260000e-05 60.2
30 TraesCS5A01G207200 chr2B 94.737 38 2 0 171 208 717000629 717000592 3.260000e-05 60.2
31 TraesCS5A01G207200 chr3B 90.476 42 4 0 167 208 1596399 1596358 4.220000e-04 56.5
32 TraesCS5A01G207200 chr3B 90.476 42 4 0 167 208 796850106 796850147 4.220000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G207200 chr5A 417905165 417908196 3031 False 5600 5600 100.000 1 3032 1 chr5A.!!$F1 3031
1 TraesCS5A01G207200 chr5A 540622744 540625174 2430 True 3528 3528 93.011 611 3032 1 chr5A.!!$R1 2421
2 TraesCS5A01G207200 chr1D 316241538 316243968 2430 True 3801 3801 95.022 615 3032 1 chr1D.!!$R1 2417
3 TraesCS5A01G207200 chr4D 491381490 491383921 2431 False 3781 3781 94.859 615 3032 1 chr4D.!!$F1 2417
4 TraesCS5A01G207200 chr4A 731634925 731637348 2423 True 3773 3773 94.842 615 3032 1 chr4A.!!$R1 2417
5 TraesCS5A01G207200 chr4A 478227133 478229528 2395 False 3747 3747 94.830 615 3032 1 chr4A.!!$F1 2417
6 TraesCS5A01G207200 chr3D 334133 336564 2431 False 3770 3770 94.778 615 3032 1 chr3D.!!$F1 2417
7 TraesCS5A01G207200 chr5D 552026636 552029046 2410 True 3757 3757 94.797 614 3032 1 chr5D.!!$R3 2418
8 TraesCS5A01G207200 chr5D 78600508 78602935 2427 True 3699 3699 94.295 614 3032 1 chr5D.!!$R1 2418
9 TraesCS5A01G207200 chr5D 555413536 555415581 2045 False 3338 3338 96.027 615 2675 1 chr5D.!!$F2 2060
10 TraesCS5A01G207200 chr5D 333089982 333091546 1564 False 2427 2427 94.867 1484 3032 1 chr5D.!!$F1 1548
11 TraesCS5A01G207200 chr2D 130076699 130079133 2434 True 3738 3738 94.540 615 3032 1 chr2D.!!$R1 2417
12 TraesCS5A01G207200 chr2D 617340744 617343175 2431 False 3731 3731 94.494 614 3032 1 chr2D.!!$F1 2418
13 TraesCS5A01G207200 chr6D 420171217 420173643 2426 False 3725 3725 94.481 615 3032 1 chr6D.!!$F1 2417
14 TraesCS5A01G207200 chr7D 586696274 586698690 2416 True 3633 3633 93.888 615 3032 1 chr7D.!!$R1 2417
15 TraesCS5A01G207200 chr1A 77263366 77265784 2418 False 3602 3602 93.627 615 3032 1 chr1A.!!$F1 2417
16 TraesCS5A01G207200 chr1A 25268607 25271007 2400 True 3432 3432 92.478 614 3032 1 chr1A.!!$R1 2418
17 TraesCS5A01G207200 chr6A 587984405 587986824 2419 True 3548 3548 93.219 615 3032 1 chr6A.!!$R1 2417
18 TraesCS5A01G207200 chr3A 693611228 693613629 2401 True 3531 3531 93.222 615 3032 1 chr3A.!!$R1 2417
19 TraesCS5A01G207200 chr7B 672857198 672859561 2363 True 3188 3188 91.065 615 2986 1 chr7B.!!$R1 2371
20 TraesCS5A01G207200 chr7A 70254453 70256082 1629 True 2412 2412 93.462 1403 3032 1 chr7A.!!$R1 1629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 275 0.029967 TCTCGTCTCGATCAGCATGC 59.970 55.0 10.51 10.51 34.61 4.06 F
409 410 0.039617 GAGGAGGATGATGAGACGCG 60.040 60.0 3.53 3.53 0.00 6.01 F
503 504 0.107410 TCCTGTGTTTTCGTGCAGGT 60.107 50.0 6.26 0.00 46.23 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 1995 1.274167 CTGGCTTGTGCAATCCATGTT 59.726 47.619 7.79 0.0 41.91 2.71 R
2035 2124 1.736681 GCTTGACTCTGAAGGATGCAC 59.263 52.381 0.00 0.0 0.00 4.57 R
2207 2296 3.496692 CCACTTCACTCCTCCATCACAAA 60.497 47.826 0.00 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.562298 AGTAGTTTGGTTTTCCTAGAGCA 57.438 39.130 0.00 0.00 41.38 4.26
23 24 5.306394 AGTAGTTTGGTTTTCCTAGAGCAC 58.694 41.667 0.00 0.00 41.38 4.40
24 25 3.139077 AGTTTGGTTTTCCTAGAGCACG 58.861 45.455 0.00 0.00 41.38 5.34
25 26 2.876550 GTTTGGTTTTCCTAGAGCACGT 59.123 45.455 0.00 0.00 41.38 4.49
26 27 4.060205 GTTTGGTTTTCCTAGAGCACGTA 58.940 43.478 0.00 0.00 41.38 3.57
27 28 3.308438 TGGTTTTCCTAGAGCACGTAC 57.692 47.619 0.00 0.00 41.38 3.67
28 29 2.257034 GGTTTTCCTAGAGCACGTACG 58.743 52.381 15.01 15.01 36.94 3.67
29 30 1.652619 GTTTTCCTAGAGCACGTACGC 59.347 52.381 16.72 0.00 0.00 4.42
30 31 0.179181 TTTCCTAGAGCACGTACGCG 60.179 55.000 16.72 3.53 44.93 6.01
31 32 2.588146 TTCCTAGAGCACGTACGCGC 62.588 60.000 20.08 20.08 42.83 6.86
32 33 2.099638 CTAGAGCACGTACGCGCA 59.900 61.111 27.94 8.67 42.83 6.09
33 34 1.298413 CTAGAGCACGTACGCGCAT 60.298 57.895 27.94 18.62 42.83 4.73
34 35 1.532343 CTAGAGCACGTACGCGCATG 61.532 60.000 27.94 14.37 42.83 4.06
35 36 2.930012 TAGAGCACGTACGCGCATGG 62.930 60.000 27.94 7.09 42.83 3.66
38 39 4.208948 CACGTACGCGCATGGCAG 62.209 66.667 16.72 0.00 43.84 4.85
39 40 4.429212 ACGTACGCGCATGGCAGA 62.429 61.111 16.72 0.00 43.84 4.26
40 41 3.620428 CGTACGCGCATGGCAGAG 61.620 66.667 5.73 0.00 43.84 3.35
41 42 2.509336 GTACGCGCATGGCAGAGT 60.509 61.111 5.73 0.00 43.84 3.24
42 43 2.509111 TACGCGCATGGCAGAGTG 60.509 61.111 5.73 0.00 43.84 3.51
43 44 3.295304 TACGCGCATGGCAGAGTGT 62.295 57.895 5.73 9.96 43.84 3.55
44 45 4.156622 CGCGCATGGCAGAGTGTG 62.157 66.667 8.75 0.00 43.84 3.82
45 46 2.743538 GCGCATGGCAGAGTGTGA 60.744 61.111 0.30 0.00 42.87 3.58
46 47 2.110967 GCGCATGGCAGAGTGTGAT 61.111 57.895 0.30 0.00 42.87 3.06
47 48 1.719709 CGCATGGCAGAGTGTGATG 59.280 57.895 0.00 0.00 0.00 3.07
48 49 1.712018 CGCATGGCAGAGTGTGATGG 61.712 60.000 0.00 0.00 0.00 3.51
49 50 0.393402 GCATGGCAGAGTGTGATGGA 60.393 55.000 0.00 0.00 0.00 3.41
50 51 1.749635 GCATGGCAGAGTGTGATGGAT 60.750 52.381 0.00 0.00 0.00 3.41
51 52 1.947456 CATGGCAGAGTGTGATGGATG 59.053 52.381 0.00 0.00 0.00 3.51
52 53 0.253894 TGGCAGAGTGTGATGGATGG 59.746 55.000 0.00 0.00 0.00 3.51
53 54 0.543277 GGCAGAGTGTGATGGATGGA 59.457 55.000 0.00 0.00 0.00 3.41
54 55 1.065199 GGCAGAGTGTGATGGATGGAA 60.065 52.381 0.00 0.00 0.00 3.53
55 56 2.422519 GGCAGAGTGTGATGGATGGAAT 60.423 50.000 0.00 0.00 0.00 3.01
56 57 2.617308 GCAGAGTGTGATGGATGGAATG 59.383 50.000 0.00 0.00 0.00 2.67
57 58 3.211865 CAGAGTGTGATGGATGGAATGG 58.788 50.000 0.00 0.00 0.00 3.16
58 59 3.117745 AGAGTGTGATGGATGGAATGGA 58.882 45.455 0.00 0.00 0.00 3.41
59 60 3.524789 AGAGTGTGATGGATGGAATGGAA 59.475 43.478 0.00 0.00 0.00 3.53
60 61 4.167502 AGAGTGTGATGGATGGAATGGAAT 59.832 41.667 0.00 0.00 0.00 3.01
61 62 4.212716 AGTGTGATGGATGGAATGGAATG 58.787 43.478 0.00 0.00 0.00 2.67
62 63 3.956199 GTGTGATGGATGGAATGGAATGT 59.044 43.478 0.00 0.00 0.00 2.71
63 64 5.103982 AGTGTGATGGATGGAATGGAATGTA 60.104 40.000 0.00 0.00 0.00 2.29
64 65 5.593909 GTGTGATGGATGGAATGGAATGTAA 59.406 40.000 0.00 0.00 0.00 2.41
65 66 6.266103 GTGTGATGGATGGAATGGAATGTAAT 59.734 38.462 0.00 0.00 0.00 1.89
66 67 6.491062 TGTGATGGATGGAATGGAATGTAATC 59.509 38.462 0.00 0.00 0.00 1.75
67 68 6.491062 GTGATGGATGGAATGGAATGTAATCA 59.509 38.462 0.00 0.00 0.00 2.57
68 69 6.717997 TGATGGATGGAATGGAATGTAATCAG 59.282 38.462 0.00 0.00 0.00 2.90
69 70 6.017211 TGGATGGAATGGAATGTAATCAGT 57.983 37.500 0.00 0.00 0.00 3.41
70 71 5.829391 TGGATGGAATGGAATGTAATCAGTG 59.171 40.000 0.00 0.00 0.00 3.66
71 72 5.242393 GGATGGAATGGAATGTAATCAGTGG 59.758 44.000 0.00 0.00 0.00 4.00
72 73 3.953612 TGGAATGGAATGTAATCAGTGGC 59.046 43.478 0.00 0.00 0.00 5.01
73 74 3.953612 GGAATGGAATGTAATCAGTGGCA 59.046 43.478 0.00 0.00 0.00 4.92
74 75 4.402155 GGAATGGAATGTAATCAGTGGCAA 59.598 41.667 0.00 0.00 0.00 4.52
75 76 5.105392 GGAATGGAATGTAATCAGTGGCAAA 60.105 40.000 0.00 0.00 0.00 3.68
76 77 5.999205 ATGGAATGTAATCAGTGGCAAAA 57.001 34.783 0.00 0.00 0.00 2.44
77 78 5.389859 TGGAATGTAATCAGTGGCAAAAG 57.610 39.130 0.00 0.00 0.00 2.27
78 79 4.220382 TGGAATGTAATCAGTGGCAAAAGG 59.780 41.667 0.00 0.00 0.00 3.11
79 80 4.462483 GGAATGTAATCAGTGGCAAAAGGA 59.538 41.667 0.00 0.00 0.00 3.36
80 81 5.393461 GGAATGTAATCAGTGGCAAAAGGAG 60.393 44.000 0.00 0.00 0.00 3.69
81 82 4.365514 TGTAATCAGTGGCAAAAGGAGA 57.634 40.909 0.00 0.00 0.00 3.71
82 83 4.072131 TGTAATCAGTGGCAAAAGGAGAC 58.928 43.478 0.00 0.00 0.00 3.36
83 84 2.206576 ATCAGTGGCAAAAGGAGACC 57.793 50.000 0.00 0.00 0.00 3.85
84 85 0.250295 TCAGTGGCAAAAGGAGACCG 60.250 55.000 0.00 0.00 0.00 4.79
85 86 1.073199 AGTGGCAAAAGGAGACCGG 59.927 57.895 0.00 0.00 0.00 5.28
86 87 1.228154 GTGGCAAAAGGAGACCGGT 60.228 57.895 6.92 6.92 0.00 5.28
87 88 1.072505 TGGCAAAAGGAGACCGGTC 59.927 57.895 27.67 27.67 0.00 4.79
88 89 2.033194 GGCAAAAGGAGACCGGTCG 61.033 63.158 28.26 13.59 34.09 4.79
89 90 1.005394 GCAAAAGGAGACCGGTCGA 60.005 57.895 28.26 0.00 34.09 4.20
90 91 1.014564 GCAAAAGGAGACCGGTCGAG 61.015 60.000 28.26 14.61 34.09 4.04
91 92 0.389948 CAAAAGGAGACCGGTCGAGG 60.390 60.000 28.26 11.34 37.30 4.63
92 93 2.168666 AAAAGGAGACCGGTCGAGGC 62.169 60.000 28.26 18.10 33.69 4.70
95 96 3.878519 GAGACCGGTCGAGGCGAG 61.879 72.222 28.26 0.00 36.23 5.03
100 101 3.744719 CGGTCGAGGCGAGGTCAA 61.745 66.667 0.00 0.00 36.23 3.18
101 102 2.182030 GGTCGAGGCGAGGTCAAG 59.818 66.667 0.00 0.00 36.23 3.02
102 103 2.507324 GTCGAGGCGAGGTCAAGC 60.507 66.667 0.00 0.00 36.23 4.01
103 104 2.989253 TCGAGGCGAGGTCAAGCA 60.989 61.111 0.00 0.00 34.54 3.91
104 105 2.048222 CGAGGCGAGGTCAAGCAA 60.048 61.111 0.00 0.00 34.54 3.91
105 106 1.667830 CGAGGCGAGGTCAAGCAAA 60.668 57.895 0.00 0.00 34.54 3.68
106 107 1.630244 CGAGGCGAGGTCAAGCAAAG 61.630 60.000 0.00 0.00 34.54 2.77
107 108 1.916697 GAGGCGAGGTCAAGCAAAGC 61.917 60.000 0.00 0.00 34.54 3.51
108 109 2.260869 GGCGAGGTCAAGCAAAGCA 61.261 57.895 0.00 0.00 34.54 3.91
109 110 1.654220 GCGAGGTCAAGCAAAGCAA 59.346 52.632 0.00 0.00 0.00 3.91
110 111 0.030638 GCGAGGTCAAGCAAAGCAAA 59.969 50.000 0.00 0.00 0.00 3.68
111 112 1.927710 GCGAGGTCAAGCAAAGCAAAG 60.928 52.381 0.00 0.00 0.00 2.77
112 113 1.775869 GAGGTCAAGCAAAGCAAAGC 58.224 50.000 0.00 0.00 0.00 3.51
113 114 1.067516 GAGGTCAAGCAAAGCAAAGCA 59.932 47.619 0.00 0.00 0.00 3.91
114 115 1.481772 AGGTCAAGCAAAGCAAAGCAA 59.518 42.857 0.00 0.00 0.00 3.91
115 116 2.093553 AGGTCAAGCAAAGCAAAGCAAA 60.094 40.909 0.00 0.00 0.00 3.68
116 117 2.286025 GGTCAAGCAAAGCAAAGCAAAG 59.714 45.455 0.00 0.00 0.00 2.77
117 118 2.286025 GTCAAGCAAAGCAAAGCAAAGG 59.714 45.455 0.00 0.00 0.00 3.11
118 119 1.003223 CAAGCAAAGCAAAGCAAAGGC 60.003 47.619 0.00 0.00 41.61 4.35
138 139 3.764049 GCGTGCCGTCGTCAAGTC 61.764 66.667 0.00 0.00 0.00 3.01
139 140 3.458579 CGTGCCGTCGTCAAGTCG 61.459 66.667 0.00 0.00 0.00 4.18
140 141 2.050714 GTGCCGTCGTCAAGTCGA 60.051 61.111 0.00 0.00 37.51 4.20
146 147 2.649034 TCGTCAAGTCGACCCAGC 59.351 61.111 13.01 0.00 42.07 4.85
147 148 2.197605 TCGTCAAGTCGACCCAGCA 61.198 57.895 13.01 0.00 42.07 4.41
148 149 2.022129 CGTCAAGTCGACCCAGCAC 61.022 63.158 13.01 1.37 42.07 4.40
149 150 2.022129 GTCAAGTCGACCCAGCACG 61.022 63.158 13.01 0.00 38.85 5.34
150 151 3.414700 CAAGTCGACCCAGCACGC 61.415 66.667 13.01 0.00 0.00 5.34
151 152 3.923864 AAGTCGACCCAGCACGCA 61.924 61.111 13.01 0.00 0.00 5.24
152 153 4.664677 AGTCGACCCAGCACGCAC 62.665 66.667 13.01 0.00 0.00 5.34
171 172 3.711842 CACGCACGCACGGTTCAT 61.712 61.111 2.61 0.00 37.37 2.57
172 173 2.970324 ACGCACGCACGGTTCATT 60.970 55.556 2.61 0.00 37.37 2.57
173 174 2.499520 CGCACGCACGGTTCATTG 60.500 61.111 0.00 0.00 0.00 2.82
174 175 2.637025 GCACGCACGGTTCATTGT 59.363 55.556 0.00 0.00 0.00 2.71
175 176 1.008995 GCACGCACGGTTCATTGTT 60.009 52.632 0.00 0.00 0.00 2.83
176 177 0.593773 GCACGCACGGTTCATTGTTT 60.594 50.000 0.00 0.00 0.00 2.83
177 178 1.833860 CACGCACGGTTCATTGTTTT 58.166 45.000 0.00 0.00 0.00 2.43
178 179 2.189342 CACGCACGGTTCATTGTTTTT 58.811 42.857 0.00 0.00 0.00 1.94
179 180 2.035009 CACGCACGGTTCATTGTTTTTG 60.035 45.455 0.00 0.00 0.00 2.44
180 181 2.159366 ACGCACGGTTCATTGTTTTTGA 60.159 40.909 0.00 0.00 0.00 2.69
181 182 2.467305 CGCACGGTTCATTGTTTTTGAG 59.533 45.455 0.00 0.00 0.00 3.02
182 183 3.701241 GCACGGTTCATTGTTTTTGAGA 58.299 40.909 0.00 0.00 0.00 3.27
183 184 4.298332 GCACGGTTCATTGTTTTTGAGAT 58.702 39.130 0.00 0.00 0.00 2.75
184 185 5.457140 GCACGGTTCATTGTTTTTGAGATA 58.543 37.500 0.00 0.00 0.00 1.98
185 186 5.569059 GCACGGTTCATTGTTTTTGAGATAG 59.431 40.000 0.00 0.00 0.00 2.08
186 187 5.569059 CACGGTTCATTGTTTTTGAGATAGC 59.431 40.000 0.00 0.00 0.00 2.97
187 188 5.473504 ACGGTTCATTGTTTTTGAGATAGCT 59.526 36.000 0.00 0.00 0.00 3.32
188 189 6.653320 ACGGTTCATTGTTTTTGAGATAGCTA 59.347 34.615 0.00 0.00 0.00 3.32
189 190 7.174253 ACGGTTCATTGTTTTTGAGATAGCTAA 59.826 33.333 0.00 0.00 0.00 3.09
190 191 7.481798 CGGTTCATTGTTTTTGAGATAGCTAAC 59.518 37.037 0.00 0.00 0.00 2.34
191 192 7.755373 GGTTCATTGTTTTTGAGATAGCTAACC 59.245 37.037 0.00 0.00 0.00 2.85
192 193 7.994425 TCATTGTTTTTGAGATAGCTAACCA 57.006 32.000 0.00 0.00 0.00 3.67
193 194 7.816640 TCATTGTTTTTGAGATAGCTAACCAC 58.183 34.615 0.00 0.00 0.00 4.16
194 195 7.665559 TCATTGTTTTTGAGATAGCTAACCACT 59.334 33.333 0.00 0.00 0.00 4.00
195 196 7.817418 TTGTTTTTGAGATAGCTAACCACTT 57.183 32.000 0.00 0.00 0.00 3.16
196 197 8.911918 TTGTTTTTGAGATAGCTAACCACTTA 57.088 30.769 0.00 0.00 0.00 2.24
197 198 9.515226 TTGTTTTTGAGATAGCTAACCACTTAT 57.485 29.630 0.00 0.00 0.00 1.73
198 199 8.946085 TGTTTTTGAGATAGCTAACCACTTATG 58.054 33.333 0.00 0.00 0.00 1.90
199 200 8.947115 GTTTTTGAGATAGCTAACCACTTATGT 58.053 33.333 0.00 0.00 0.00 2.29
200 201 8.718102 TTTTGAGATAGCTAACCACTTATGTC 57.282 34.615 0.00 0.00 0.00 3.06
201 202 7.418337 TTGAGATAGCTAACCACTTATGTCA 57.582 36.000 0.00 0.00 0.00 3.58
202 203 7.418337 TGAGATAGCTAACCACTTATGTCAA 57.582 36.000 0.00 0.00 0.00 3.18
203 204 7.492524 TGAGATAGCTAACCACTTATGTCAAG 58.507 38.462 0.00 0.00 0.00 3.02
204 205 7.124298 TGAGATAGCTAACCACTTATGTCAAGT 59.876 37.037 0.00 0.00 0.00 3.16
205 206 7.268586 AGATAGCTAACCACTTATGTCAAGTG 58.731 38.462 9.63 9.63 45.33 3.16
212 213 2.157668 CACTTATGTCAAGTGGTCACGC 59.842 50.000 8.88 0.00 42.83 5.34
213 214 2.224185 ACTTATGTCAAGTGGTCACGCA 60.224 45.455 0.00 0.00 36.20 5.24
214 215 1.790755 TATGTCAAGTGGTCACGCAC 58.209 50.000 0.00 0.00 36.20 5.34
215 216 1.221466 ATGTCAAGTGGTCACGCACG 61.221 55.000 0.00 0.00 36.20 5.34
216 217 2.964925 TCAAGTGGTCACGCACGC 60.965 61.111 0.00 0.00 36.20 5.34
217 218 3.268603 CAAGTGGTCACGCACGCA 61.269 61.111 0.00 0.00 36.20 5.24
218 219 3.269347 AAGTGGTCACGCACGCAC 61.269 61.111 0.00 0.00 36.20 5.34
223 224 4.349871 GTCACGCACGCACGGTTC 62.350 66.667 2.61 0.00 37.37 3.62
228 229 3.764049 GCACGCACGGTTCGTCTC 61.764 66.667 2.15 0.00 38.32 3.36
229 230 3.458579 CACGCACGGTTCGTCTCG 61.459 66.667 2.15 9.07 38.32 4.04
230 231 3.957535 ACGCACGGTTCGTCTCGT 61.958 61.111 0.00 10.05 38.32 4.18
231 232 2.174107 CGCACGGTTCGTCTCGTA 59.826 61.111 0.00 0.00 38.32 3.43
232 233 2.142239 CGCACGGTTCGTCTCGTAC 61.142 63.158 0.00 0.00 38.32 3.67
233 234 1.799121 GCACGGTTCGTCTCGTACC 60.799 63.158 7.65 7.65 42.41 3.34
234 235 1.154150 CACGGTTCGTCTCGTACCC 60.154 63.158 11.11 0.24 42.77 3.69
235 236 1.600636 ACGGTTCGTCTCGTACCCA 60.601 57.895 11.11 0.00 42.77 4.51
236 237 1.172180 ACGGTTCGTCTCGTACCCAA 61.172 55.000 11.11 0.00 42.77 4.12
237 238 0.171903 CGGTTCGTCTCGTACCCAAT 59.828 55.000 11.11 0.00 42.77 3.16
238 239 1.401552 CGGTTCGTCTCGTACCCAATA 59.598 52.381 11.11 0.00 42.77 1.90
239 240 2.033801 CGGTTCGTCTCGTACCCAATAT 59.966 50.000 11.11 0.00 42.77 1.28
240 241 3.636381 GGTTCGTCTCGTACCCAATATC 58.364 50.000 6.67 0.00 40.52 1.63
241 242 3.294943 GTTCGTCTCGTACCCAATATCG 58.705 50.000 0.00 0.00 0.00 2.92
242 243 2.837498 TCGTCTCGTACCCAATATCGA 58.163 47.619 0.00 0.00 0.00 3.59
243 244 3.405831 TCGTCTCGTACCCAATATCGAT 58.594 45.455 2.16 2.16 0.00 3.59
244 245 3.434641 TCGTCTCGTACCCAATATCGATC 59.565 47.826 0.00 0.00 0.00 3.69
245 246 3.724128 CGTCTCGTACCCAATATCGATCG 60.724 52.174 9.36 9.36 0.00 3.69
246 247 3.434641 GTCTCGTACCCAATATCGATCGA 59.565 47.826 21.86 21.86 0.00 3.59
247 248 4.094590 GTCTCGTACCCAATATCGATCGAT 59.905 45.833 31.39 31.39 38.54 3.59
248 249 4.331992 TCTCGTACCCAATATCGATCGATC 59.668 45.833 32.50 15.68 36.17 3.69
259 260 3.571735 GATCGATCGATCCGTCTCG 57.428 57.895 36.97 8.65 43.71 4.04
260 261 0.791422 GATCGATCGATCCGTCTCGT 59.209 55.000 36.97 13.70 43.71 4.18
261 262 0.791422 ATCGATCGATCCGTCTCGTC 59.209 55.000 24.60 0.00 39.62 4.20
262 263 0.249363 TCGATCGATCCGTCTCGTCT 60.249 55.000 19.51 0.00 39.62 4.18
263 264 0.162082 CGATCGATCCGTCTCGTCTC 59.838 60.000 19.51 0.00 39.62 3.36
264 265 0.162082 GATCGATCCGTCTCGTCTCG 59.838 60.000 14.76 0.00 39.62 4.04
265 266 0.249363 ATCGATCCGTCTCGTCTCGA 60.249 55.000 12.67 12.67 40.20 4.04
266 267 0.249363 TCGATCCGTCTCGTCTCGAT 60.249 55.000 8.40 0.00 39.62 3.59
267 268 0.162082 CGATCCGTCTCGTCTCGATC 59.838 60.000 0.00 0.00 34.61 3.69
268 269 1.218763 GATCCGTCTCGTCTCGATCA 58.781 55.000 0.00 0.00 34.61 2.92
269 270 1.193650 GATCCGTCTCGTCTCGATCAG 59.806 57.143 0.00 0.00 34.61 2.90
270 271 1.010574 CCGTCTCGTCTCGATCAGC 60.011 63.158 0.00 0.00 34.61 4.26
271 272 1.706287 CCGTCTCGTCTCGATCAGCA 61.706 60.000 0.00 0.00 34.61 4.41
272 273 0.306228 CGTCTCGTCTCGATCAGCAT 59.694 55.000 0.00 0.00 34.61 3.79
273 274 1.752753 GTCTCGTCTCGATCAGCATG 58.247 55.000 0.00 0.00 34.61 4.06
274 275 0.029967 TCTCGTCTCGATCAGCATGC 59.970 55.000 10.51 10.51 34.61 4.06
275 276 0.248784 CTCGTCTCGATCAGCATGCA 60.249 55.000 21.98 0.00 34.61 3.96
276 277 0.248784 TCGTCTCGATCAGCATGCAG 60.249 55.000 21.98 12.90 34.76 4.41
277 278 1.819226 CGTCTCGATCAGCATGCAGC 61.819 60.000 21.98 1.12 46.19 5.25
286 287 4.450122 GCATGCAGCGTGTGTCGG 62.450 66.667 14.21 0.00 40.26 4.79
287 288 2.738139 CATGCAGCGTGTGTCGGA 60.738 61.111 6.43 0.00 40.26 4.55
288 289 2.433145 ATGCAGCGTGTGTCGGAG 60.433 61.111 0.00 0.00 40.26 4.63
289 290 2.931068 ATGCAGCGTGTGTCGGAGA 61.931 57.895 0.00 0.00 40.26 3.71
290 291 2.355837 GCAGCGTGTGTCGGAGAA 60.356 61.111 0.00 0.00 39.69 2.87
291 292 1.954146 GCAGCGTGTGTCGGAGAAA 60.954 57.895 0.00 0.00 39.69 2.52
292 293 1.495584 GCAGCGTGTGTCGGAGAAAA 61.496 55.000 0.00 0.00 39.69 2.29
293 294 0.934496 CAGCGTGTGTCGGAGAAAAA 59.066 50.000 0.00 0.00 39.69 1.94
294 295 0.935196 AGCGTGTGTCGGAGAAAAAC 59.065 50.000 0.00 0.00 39.69 2.43
295 296 0.382636 GCGTGTGTCGGAGAAAAACG 60.383 55.000 0.00 0.00 39.69 3.60
296 297 0.382636 CGTGTGTCGGAGAAAAACGC 60.383 55.000 0.00 0.00 39.69 4.84
297 298 0.041576 GTGTGTCGGAGAAAAACGCC 60.042 55.000 0.00 0.00 39.69 5.68
298 299 1.161563 TGTGTCGGAGAAAAACGCCC 61.162 55.000 0.00 0.00 39.69 6.13
299 300 0.883370 GTGTCGGAGAAAAACGCCCT 60.883 55.000 0.00 0.00 39.69 5.19
300 301 0.601841 TGTCGGAGAAAAACGCCCTC 60.602 55.000 0.00 0.00 39.69 4.30
301 302 1.373748 TCGGAGAAAAACGCCCTCG 60.374 57.895 0.00 0.00 42.43 4.63
302 303 2.388232 CGGAGAAAAACGCCCTCGG 61.388 63.158 0.00 0.00 40.69 4.63
303 304 2.687805 GGAGAAAAACGCCCTCGGC 61.688 63.158 0.00 0.00 46.75 5.54
332 333 4.524318 CGTACCTCCCGCCGCATT 62.524 66.667 0.00 0.00 0.00 3.56
333 334 2.588034 GTACCTCCCGCCGCATTC 60.588 66.667 0.00 0.00 0.00 2.67
334 335 3.857038 TACCTCCCGCCGCATTCC 61.857 66.667 0.00 0.00 0.00 3.01
337 338 4.215742 CTCCCGCCGCATTCCGTA 62.216 66.667 0.00 0.00 34.38 4.02
338 339 4.215742 TCCCGCCGCATTCCGTAG 62.216 66.667 0.00 0.00 34.38 3.51
342 343 3.573491 GCCGCATTCCGTAGCCAC 61.573 66.667 0.00 0.00 34.38 5.01
343 344 2.125310 CCGCATTCCGTAGCCACA 60.125 61.111 0.00 0.00 34.38 4.17
344 345 2.461110 CCGCATTCCGTAGCCACAC 61.461 63.158 0.00 0.00 34.38 3.82
345 346 2.461110 CGCATTCCGTAGCCACACC 61.461 63.158 0.00 0.00 0.00 4.16
346 347 1.078426 GCATTCCGTAGCCACACCT 60.078 57.895 0.00 0.00 0.00 4.00
347 348 0.177141 GCATTCCGTAGCCACACCTA 59.823 55.000 0.00 0.00 0.00 3.08
348 349 1.935933 CATTCCGTAGCCACACCTAC 58.064 55.000 0.00 0.00 35.46 3.18
352 353 4.779819 GTAGCCACACCTACGACG 57.220 61.111 0.00 0.00 0.00 5.12
353 354 1.515736 GTAGCCACACCTACGACGC 60.516 63.158 0.00 0.00 0.00 5.19
354 355 1.676635 TAGCCACACCTACGACGCT 60.677 57.895 0.00 0.00 0.00 5.07
355 356 0.392863 TAGCCACACCTACGACGCTA 60.393 55.000 0.00 0.00 0.00 4.26
356 357 1.515736 GCCACACCTACGACGCTAC 60.516 63.158 0.00 0.00 0.00 3.58
357 358 1.226211 CCACACCTACGACGCTACG 60.226 63.158 0.00 0.00 39.31 3.51
358 359 1.638388 CCACACCTACGACGCTACGA 61.638 60.000 6.42 0.00 37.03 3.43
359 360 0.519999 CACACCTACGACGCTACGAC 60.520 60.000 6.42 0.00 37.03 4.34
360 361 0.671781 ACACCTACGACGCTACGACT 60.672 55.000 6.42 0.00 37.03 4.18
361 362 0.247576 CACCTACGACGCTACGACTG 60.248 60.000 6.42 0.00 37.03 3.51
362 363 1.297451 CCTACGACGCTACGACTGC 60.297 63.158 6.42 0.00 37.03 4.40
363 364 1.703438 CCTACGACGCTACGACTGCT 61.703 60.000 6.42 0.00 37.03 4.24
364 365 0.586748 CTACGACGCTACGACTGCTG 60.587 60.000 6.42 0.00 37.03 4.41
365 366 2.573341 TACGACGCTACGACTGCTGC 62.573 60.000 6.42 0.00 37.03 5.25
366 367 2.179517 GACGCTACGACTGCTGCT 59.820 61.111 0.00 0.00 0.00 4.24
367 368 2.126307 ACGCTACGACTGCTGCTG 60.126 61.111 4.89 4.89 0.00 4.41
368 369 3.549150 CGCTACGACTGCTGCTGC 61.549 66.667 8.89 8.89 40.20 5.25
369 370 2.125753 GCTACGACTGCTGCTGCT 60.126 61.111 17.00 0.00 40.48 4.24
370 371 2.451167 GCTACGACTGCTGCTGCTG 61.451 63.158 18.66 18.66 42.70 4.41
371 372 2.433145 TACGACTGCTGCTGCTGC 60.433 61.111 22.51 22.51 41.07 5.25
372 373 2.832368 CTACGACTGCTGCTGCTGCT 62.832 60.000 27.67 12.31 41.07 4.24
373 374 1.595093 TACGACTGCTGCTGCTGCTA 61.595 55.000 27.67 15.49 41.07 3.49
374 375 2.451167 CGACTGCTGCTGCTGCTAC 61.451 63.158 27.67 18.27 41.07 3.58
375 376 1.375140 GACTGCTGCTGCTGCTACA 60.375 57.895 27.67 12.96 41.07 2.74
376 377 1.633852 GACTGCTGCTGCTGCTACAC 61.634 60.000 27.67 14.87 41.07 2.90
377 378 2.737688 CTGCTGCTGCTGCTACACG 61.738 63.158 27.67 10.67 40.48 4.49
378 379 3.494336 GCTGCTGCTGCTACACGG 61.494 66.667 22.10 1.89 40.48 4.94
379 380 2.262603 CTGCTGCTGCTACACGGA 59.737 61.111 17.00 0.00 40.48 4.69
380 381 1.808799 CTGCTGCTGCTACACGGAG 60.809 63.158 17.00 0.00 40.48 4.63
381 382 2.510238 GCTGCTGCTACACGGAGG 60.510 66.667 8.53 0.00 36.03 4.30
382 383 2.185350 CTGCTGCTACACGGAGGG 59.815 66.667 0.00 0.00 0.00 4.30
383 384 3.376935 CTGCTGCTACACGGAGGGG 62.377 68.421 0.00 0.00 0.00 4.79
384 385 4.162690 GCTGCTACACGGAGGGGG 62.163 72.222 0.00 0.00 0.00 5.40
385 386 2.363795 CTGCTACACGGAGGGGGA 60.364 66.667 0.00 0.00 0.00 4.81
386 387 2.363795 TGCTACACGGAGGGGGAG 60.364 66.667 0.00 0.00 0.00 4.30
387 388 3.155167 GCTACACGGAGGGGGAGG 61.155 72.222 0.00 0.00 0.00 4.30
388 389 2.687902 CTACACGGAGGGGGAGGA 59.312 66.667 0.00 0.00 0.00 3.71
389 390 1.455959 CTACACGGAGGGGGAGGAG 60.456 68.421 0.00 0.00 0.00 3.69
390 391 2.930777 CTACACGGAGGGGGAGGAGG 62.931 70.000 0.00 0.00 0.00 4.30
391 392 4.075793 CACGGAGGGGGAGGAGGA 62.076 72.222 0.00 0.00 0.00 3.71
392 393 3.756783 ACGGAGGGGGAGGAGGAG 61.757 72.222 0.00 0.00 0.00 3.69
393 394 4.548513 CGGAGGGGGAGGAGGAGG 62.549 77.778 0.00 0.00 0.00 4.30
394 395 3.036959 GGAGGGGGAGGAGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
395 396 2.612251 GAGGGGGAGGAGGAGGAG 59.388 72.222 0.00 0.00 0.00 3.69
396 397 3.039526 AGGGGGAGGAGGAGGAGG 61.040 72.222 0.00 0.00 0.00 4.30
397 398 3.036959 GGGGGAGGAGGAGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
398 399 2.416923 GGGGGAGGAGGAGGAGGAT 61.417 68.421 0.00 0.00 0.00 3.24
399 400 1.152139 GGGGAGGAGGAGGAGGATG 60.152 68.421 0.00 0.00 0.00 3.51
400 401 1.669927 GGGGAGGAGGAGGAGGATGA 61.670 65.000 0.00 0.00 0.00 2.92
401 402 0.491371 GGGAGGAGGAGGAGGATGAT 59.509 60.000 0.00 0.00 0.00 2.45
402 403 1.643310 GGAGGAGGAGGAGGATGATG 58.357 60.000 0.00 0.00 0.00 3.07
403 404 1.148867 GGAGGAGGAGGAGGATGATGA 59.851 57.143 0.00 0.00 0.00 2.92
404 405 2.528564 GAGGAGGAGGAGGATGATGAG 58.471 57.143 0.00 0.00 0.00 2.90
405 406 2.109834 GAGGAGGAGGAGGATGATGAGA 59.890 54.545 0.00 0.00 0.00 3.27
406 407 2.158325 AGGAGGAGGAGGATGATGAGAC 60.158 54.545 0.00 0.00 0.00 3.36
407 408 1.885887 GAGGAGGAGGATGATGAGACG 59.114 57.143 0.00 0.00 0.00 4.18
408 409 0.316841 GGAGGAGGATGATGAGACGC 59.683 60.000 0.00 0.00 0.00 5.19
409 410 0.039617 GAGGAGGATGATGAGACGCG 60.040 60.000 3.53 3.53 0.00 6.01
410 411 1.663074 GGAGGATGATGAGACGCGC 60.663 63.158 5.73 0.00 0.00 6.86
411 412 2.013483 GAGGATGATGAGACGCGCG 61.013 63.158 30.96 30.96 0.00 6.86
412 413 3.696426 GGATGATGAGACGCGCGC 61.696 66.667 32.58 23.91 0.00 6.86
445 446 3.782244 CGCGCAGGTGCAGAGAAC 61.782 66.667 8.75 0.00 42.21 3.01
446 447 3.426568 GCGCAGGTGCAGAGAACC 61.427 66.667 0.30 0.00 42.21 3.62
447 448 2.031012 CGCAGGTGCAGAGAACCA 59.969 61.111 2.33 0.00 40.40 3.67
448 449 1.597854 CGCAGGTGCAGAGAACCAA 60.598 57.895 2.33 0.00 40.40 3.67
449 450 1.845809 CGCAGGTGCAGAGAACCAAC 61.846 60.000 2.33 0.00 40.40 3.77
450 451 1.518903 GCAGGTGCAGAGAACCAACC 61.519 60.000 0.00 0.00 40.40 3.77
451 452 0.179020 CAGGTGCAGAGAACCAACCA 60.179 55.000 0.00 0.00 40.40 3.67
452 453 0.179018 AGGTGCAGAGAACCAACCAC 60.179 55.000 0.00 0.00 40.40 4.16
453 454 0.465460 GGTGCAGAGAACCAACCACA 60.465 55.000 0.00 0.00 37.65 4.17
454 455 1.609208 GTGCAGAGAACCAACCACAT 58.391 50.000 0.00 0.00 0.00 3.21
455 456 1.537202 GTGCAGAGAACCAACCACATC 59.463 52.381 0.00 0.00 0.00 3.06
456 457 0.798776 GCAGAGAACCAACCACATCG 59.201 55.000 0.00 0.00 0.00 3.84
457 458 1.878102 GCAGAGAACCAACCACATCGT 60.878 52.381 0.00 0.00 0.00 3.73
458 459 1.800586 CAGAGAACCAACCACATCGTG 59.199 52.381 0.00 0.00 0.00 4.35
459 460 0.517316 GAGAACCAACCACATCGTGC 59.483 55.000 0.00 0.00 31.34 5.34
460 461 1.206578 GAACCAACCACATCGTGCG 59.793 57.895 0.00 0.00 31.34 5.34
461 462 2.780149 GAACCAACCACATCGTGCGC 62.780 60.000 0.00 0.00 31.34 6.09
462 463 3.353029 CCAACCACATCGTGCGCA 61.353 61.111 5.66 5.66 31.34 6.09
463 464 2.127270 CAACCACATCGTGCGCAC 60.127 61.111 30.42 30.42 31.34 5.34
494 495 3.284449 GCGGCGGTCCTGTGTTTT 61.284 61.111 9.78 0.00 0.00 2.43
495 496 2.943653 CGGCGGTCCTGTGTTTTC 59.056 61.111 0.00 0.00 0.00 2.29
496 497 2.943653 GGCGGTCCTGTGTTTTCG 59.056 61.111 0.00 0.00 0.00 3.46
497 498 1.890510 GGCGGTCCTGTGTTTTCGT 60.891 57.895 0.00 0.00 0.00 3.85
498 499 1.278637 GCGGTCCTGTGTTTTCGTG 59.721 57.895 0.00 0.00 0.00 4.35
499 500 1.278637 CGGTCCTGTGTTTTCGTGC 59.721 57.895 0.00 0.00 0.00 5.34
500 501 1.433053 CGGTCCTGTGTTTTCGTGCA 61.433 55.000 0.00 0.00 0.00 4.57
501 502 0.307760 GGTCCTGTGTTTTCGTGCAG 59.692 55.000 0.00 0.00 0.00 4.41
503 504 0.107410 TCCTGTGTTTTCGTGCAGGT 60.107 50.000 6.26 0.00 46.23 4.00
504 505 0.738389 CCTGTGTTTTCGTGCAGGTT 59.262 50.000 6.26 0.00 42.47 3.50
505 506 1.268539 CCTGTGTTTTCGTGCAGGTTC 60.269 52.381 6.26 0.00 42.47 3.62
506 507 1.400142 CTGTGTTTTCGTGCAGGTTCA 59.600 47.619 6.26 0.00 0.00 3.18
507 508 2.020720 TGTGTTTTCGTGCAGGTTCAT 58.979 42.857 6.26 0.00 0.00 2.57
508 509 2.425312 TGTGTTTTCGTGCAGGTTCATT 59.575 40.909 6.26 0.00 0.00 2.57
509 510 2.788786 GTGTTTTCGTGCAGGTTCATTG 59.211 45.455 6.26 0.00 0.00 2.82
510 511 1.786579 GTTTTCGTGCAGGTTCATTGC 59.213 47.619 6.26 0.00 41.86 3.56
515 516 2.644887 TGCAGGTTCATTGCACTCC 58.355 52.632 0.00 0.00 45.89 3.85
516 517 0.178995 TGCAGGTTCATTGCACTCCA 60.179 50.000 0.00 0.00 45.89 3.86
517 518 0.242017 GCAGGTTCATTGCACTCCAC 59.758 55.000 0.00 0.00 41.17 4.02
518 519 0.518636 CAGGTTCATTGCACTCCACG 59.481 55.000 0.00 0.00 0.00 4.94
519 520 1.210155 GGTTCATTGCACTCCACGC 59.790 57.895 0.00 0.00 0.00 5.34
520 521 1.154413 GTTCATTGCACTCCACGCG 60.154 57.895 3.53 3.53 0.00 6.01
521 522 1.596752 TTCATTGCACTCCACGCGT 60.597 52.632 5.58 5.58 0.00 6.01
522 523 1.840630 TTCATTGCACTCCACGCGTG 61.841 55.000 31.77 31.77 35.53 5.34
548 549 3.009140 CGACACCTCGCATGCATC 58.991 61.111 19.57 3.94 31.91 3.91
549 550 1.520120 CGACACCTCGCATGCATCT 60.520 57.895 19.57 0.00 31.91 2.90
550 551 1.485838 CGACACCTCGCATGCATCTC 61.486 60.000 19.57 1.87 31.91 2.75
551 552 1.485838 GACACCTCGCATGCATCTCG 61.486 60.000 19.57 10.66 0.00 4.04
552 553 1.227060 CACCTCGCATGCATCTCGA 60.227 57.895 19.57 16.69 0.00 4.04
553 554 0.599466 CACCTCGCATGCATCTCGAT 60.599 55.000 19.57 5.02 0.00 3.59
554 555 0.319383 ACCTCGCATGCATCTCGATC 60.319 55.000 19.57 0.00 0.00 3.69
555 556 1.342796 CCTCGCATGCATCTCGATCG 61.343 60.000 19.57 9.36 0.00 3.69
556 557 1.342796 CTCGCATGCATCTCGATCGG 61.343 60.000 19.57 6.26 0.00 4.18
557 558 1.662760 CGCATGCATCTCGATCGGT 60.663 57.895 19.57 0.00 0.00 4.69
558 559 1.612469 CGCATGCATCTCGATCGGTC 61.612 60.000 19.57 0.95 0.00 4.79
570 571 3.635271 ATCGGTCGATCGATCCTCT 57.365 52.632 27.20 6.53 45.43 3.69
571 572 1.444836 ATCGGTCGATCGATCCTCTC 58.555 55.000 27.20 6.85 45.43 3.20
572 573 2.268953 ATCGGTCGATCGATCCTCTCG 61.269 57.143 27.20 16.73 45.43 4.04
573 574 4.807105 ATCGGTCGATCGATCCTCTCGT 62.807 54.545 27.20 4.08 45.43 4.18
581 582 2.493713 CGATCCTCTCGTGGTAAAGG 57.506 55.000 0.00 0.00 42.56 3.11
582 583 1.749634 CGATCCTCTCGTGGTAAAGGT 59.250 52.381 0.00 0.00 42.56 3.50
583 584 2.947652 CGATCCTCTCGTGGTAAAGGTA 59.052 50.000 0.00 0.00 42.56 3.08
584 585 3.243002 CGATCCTCTCGTGGTAAAGGTAC 60.243 52.174 0.00 0.00 42.56 3.34
585 586 6.275738 CGATCCTCTCGTGGTAAAGGTACC 62.276 54.167 2.73 2.73 43.29 3.34
594 595 2.079158 GGTAAAGGTACCTTGTTCGCC 58.921 52.381 27.75 19.27 45.72 5.54
595 596 1.728425 GTAAAGGTACCTTGTTCGCCG 59.272 52.381 27.75 0.00 36.26 6.46
596 597 0.604511 AAAGGTACCTTGTTCGCCGG 60.605 55.000 27.75 0.00 36.26 6.13
597 598 3.122971 GGTACCTTGTTCGCCGGC 61.123 66.667 19.07 19.07 0.00 6.13
598 599 2.357760 GTACCTTGTTCGCCGGCA 60.358 61.111 28.98 11.20 0.00 5.69
599 600 2.047655 TACCTTGTTCGCCGGCAG 60.048 61.111 28.98 19.33 0.00 4.85
771 780 3.799137 TTGACCGTTTTAACAGCGATC 57.201 42.857 0.00 0.00 0.00 3.69
852 871 2.181021 CCGTTAGAGCCGCTCGTT 59.819 61.111 14.71 0.98 35.36 3.85
1034 1072 2.089121 CGAACAACAATGAGACGTCGAG 59.911 50.000 10.46 2.20 0.00 4.04
1385 1458 7.238710 TCATAGGATGTGCTACTGAGGTAATA 58.761 38.462 0.00 0.00 0.00 0.98
1422 1495 6.071952 TGTGGATTTGAGTAGCTTGAATTTCC 60.072 38.462 0.00 0.00 0.00 3.13
1474 1548 5.835257 TGCTGTTCTTCTGAAATTTCCTTG 58.165 37.500 15.48 6.22 33.52 3.61
1869 1958 1.065636 CAGCTGGTGGATGATGTGTCT 60.066 52.381 5.57 0.00 32.28 3.41
1972 2061 1.696336 AGAAGCAACTTGAGGAGCAGA 59.304 47.619 0.00 0.00 0.00 4.26
2027 2116 4.500375 GCTCAAGAAAGAACAAAGGTGCAT 60.500 41.667 0.00 0.00 0.00 3.96
2028 2117 5.186996 TCAAGAAAGAACAAAGGTGCATC 57.813 39.130 0.00 0.00 0.00 3.91
2029 2118 4.889409 TCAAGAAAGAACAAAGGTGCATCT 59.111 37.500 0.00 0.00 0.00 2.90
2030 2119 4.843220 AGAAAGAACAAAGGTGCATCTG 57.157 40.909 0.00 0.00 0.00 2.90
2031 2120 4.464008 AGAAAGAACAAAGGTGCATCTGA 58.536 39.130 0.00 0.00 0.00 3.27
2032 2121 4.889409 AGAAAGAACAAAGGTGCATCTGAA 59.111 37.500 0.00 0.00 0.00 3.02
2033 2122 5.360714 AGAAAGAACAAAGGTGCATCTGAAA 59.639 36.000 0.00 0.00 0.00 2.69
2034 2123 4.843220 AGAACAAAGGTGCATCTGAAAG 57.157 40.909 0.00 0.00 0.00 2.62
2035 2124 3.571401 AGAACAAAGGTGCATCTGAAAGG 59.429 43.478 0.00 0.00 0.00 3.11
2207 2296 6.153510 GGAAAAGCTGGACAAGATAAAGGAAT 59.846 38.462 0.00 0.00 0.00 3.01
2330 2451 7.239438 CCCTGATCTACCTATGAACTACCTTA 58.761 42.308 0.00 0.00 0.00 2.69
2568 2692 6.206243 CACAGGTTCAGACAAATTCAGAGAAT 59.794 38.462 0.00 0.00 0.00 2.40
2583 2707 9.702494 AATTCAGAGAATTTTGGAAGACATTTC 57.298 29.630 0.00 0.00 0.00 2.17
2703 2843 4.211125 TGCAAACACCCTGATAAACTGAA 58.789 39.130 0.00 0.00 0.00 3.02
2823 3019 2.037251 GCTTGACTTGAGTGGTAGGTGA 59.963 50.000 0.00 0.00 0.00 4.02
2859 3055 2.556189 CCTCTTCGTCTCCATCGATGAT 59.444 50.000 26.86 0.00 39.44 2.45
2922 3118 0.179062 GCGATGATCTGCAGGTCCTT 60.179 55.000 24.06 11.74 0.00 3.36
3009 3205 1.000396 GTTCCCTCTGCCCAGCATT 60.000 57.895 0.00 0.00 38.13 3.56
3011 3207 1.792757 TTCCCTCTGCCCAGCATTGT 61.793 55.000 0.00 0.00 38.13 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.151867 CGTGCTCTAGGAAAACCAAACTAC 59.848 45.833 0.00 0.00 0.00 2.73
2 3 4.202284 ACGTGCTCTAGGAAAACCAAACTA 60.202 41.667 0.00 0.00 0.00 2.24
4 5 2.876550 ACGTGCTCTAGGAAAACCAAAC 59.123 45.455 0.00 0.00 0.00 2.93
5 6 3.202829 ACGTGCTCTAGGAAAACCAAA 57.797 42.857 0.00 0.00 0.00 3.28
6 7 2.922740 ACGTGCTCTAGGAAAACCAA 57.077 45.000 0.00 0.00 0.00 3.67
7 8 2.352030 CGTACGTGCTCTAGGAAAACCA 60.352 50.000 7.22 0.00 0.00 3.67
8 9 2.257034 CGTACGTGCTCTAGGAAAACC 58.743 52.381 7.22 0.00 0.00 3.27
9 10 1.652619 GCGTACGTGCTCTAGGAAAAC 59.347 52.381 17.90 0.00 0.00 2.43
10 11 1.730121 CGCGTACGTGCTCTAGGAAAA 60.730 52.381 16.78 0.00 33.53 2.29
11 12 0.179181 CGCGTACGTGCTCTAGGAAA 60.179 55.000 16.78 0.00 33.53 3.13
12 13 1.426621 CGCGTACGTGCTCTAGGAA 59.573 57.895 16.78 0.00 33.53 3.36
13 14 3.095911 CGCGTACGTGCTCTAGGA 58.904 61.111 16.78 0.00 33.53 2.94
14 15 2.651232 GCGCGTACGTGCTCTAGG 60.651 66.667 38.55 10.91 46.85 3.02
21 22 4.208948 CTGCCATGCGCGTACGTG 62.209 66.667 23.94 23.94 42.08 4.49
22 23 4.429212 TCTGCCATGCGCGTACGT 62.429 61.111 17.90 0.00 42.08 3.57
23 24 3.620428 CTCTGCCATGCGCGTACG 61.620 66.667 11.84 11.84 42.08 3.67
24 25 2.509336 ACTCTGCCATGCGCGTAC 60.509 61.111 8.43 0.00 42.08 3.67
25 26 2.509111 CACTCTGCCATGCGCGTA 60.509 61.111 8.43 2.40 42.08 4.42
26 27 4.687215 ACACTCTGCCATGCGCGT 62.687 61.111 8.43 0.00 42.08 6.01
27 28 4.156622 CACACTCTGCCATGCGCG 62.157 66.667 0.00 0.00 42.08 6.86
28 29 2.110967 ATCACACTCTGCCATGCGC 61.111 57.895 0.00 0.00 38.31 6.09
29 30 1.712018 CCATCACACTCTGCCATGCG 61.712 60.000 0.00 0.00 0.00 4.73
30 31 0.393402 TCCATCACACTCTGCCATGC 60.393 55.000 0.00 0.00 0.00 4.06
31 32 1.947456 CATCCATCACACTCTGCCATG 59.053 52.381 0.00 0.00 0.00 3.66
32 33 1.133884 CCATCCATCACACTCTGCCAT 60.134 52.381 0.00 0.00 0.00 4.40
33 34 0.253894 CCATCCATCACACTCTGCCA 59.746 55.000 0.00 0.00 0.00 4.92
34 35 0.543277 TCCATCCATCACACTCTGCC 59.457 55.000 0.00 0.00 0.00 4.85
35 36 2.408271 TTCCATCCATCACACTCTGC 57.592 50.000 0.00 0.00 0.00 4.26
36 37 3.118149 TCCATTCCATCCATCACACTCTG 60.118 47.826 0.00 0.00 0.00 3.35
37 38 3.117745 TCCATTCCATCCATCACACTCT 58.882 45.455 0.00 0.00 0.00 3.24
38 39 3.565764 TCCATTCCATCCATCACACTC 57.434 47.619 0.00 0.00 0.00 3.51
39 40 4.212716 CATTCCATTCCATCCATCACACT 58.787 43.478 0.00 0.00 0.00 3.55
40 41 3.956199 ACATTCCATTCCATCCATCACAC 59.044 43.478 0.00 0.00 0.00 3.82
41 42 4.254039 ACATTCCATTCCATCCATCACA 57.746 40.909 0.00 0.00 0.00 3.58
42 43 6.491062 TGATTACATTCCATTCCATCCATCAC 59.509 38.462 0.00 0.00 0.00 3.06
43 44 6.612741 TGATTACATTCCATTCCATCCATCA 58.387 36.000 0.00 0.00 0.00 3.07
44 45 6.718454 ACTGATTACATTCCATTCCATCCATC 59.282 38.462 0.00 0.00 0.00 3.51
45 46 6.492429 CACTGATTACATTCCATTCCATCCAT 59.508 38.462 0.00 0.00 0.00 3.41
46 47 5.829391 CACTGATTACATTCCATTCCATCCA 59.171 40.000 0.00 0.00 0.00 3.41
47 48 5.242393 CCACTGATTACATTCCATTCCATCC 59.758 44.000 0.00 0.00 0.00 3.51
48 49 5.278660 GCCACTGATTACATTCCATTCCATC 60.279 44.000 0.00 0.00 0.00 3.51
49 50 4.586001 GCCACTGATTACATTCCATTCCAT 59.414 41.667 0.00 0.00 0.00 3.41
50 51 3.953612 GCCACTGATTACATTCCATTCCA 59.046 43.478 0.00 0.00 0.00 3.53
51 52 3.953612 TGCCACTGATTACATTCCATTCC 59.046 43.478 0.00 0.00 0.00 3.01
52 53 5.581126 TTGCCACTGATTACATTCCATTC 57.419 39.130 0.00 0.00 0.00 2.67
53 54 5.999205 TTTGCCACTGATTACATTCCATT 57.001 34.783 0.00 0.00 0.00 3.16
54 55 5.105228 CCTTTTGCCACTGATTACATTCCAT 60.105 40.000 0.00 0.00 0.00 3.41
55 56 4.220382 CCTTTTGCCACTGATTACATTCCA 59.780 41.667 0.00 0.00 0.00 3.53
56 57 4.462483 TCCTTTTGCCACTGATTACATTCC 59.538 41.667 0.00 0.00 0.00 3.01
57 58 5.415701 TCTCCTTTTGCCACTGATTACATTC 59.584 40.000 0.00 0.00 0.00 2.67
58 59 5.183904 GTCTCCTTTTGCCACTGATTACATT 59.816 40.000 0.00 0.00 0.00 2.71
59 60 4.702131 GTCTCCTTTTGCCACTGATTACAT 59.298 41.667 0.00 0.00 0.00 2.29
60 61 4.072131 GTCTCCTTTTGCCACTGATTACA 58.928 43.478 0.00 0.00 0.00 2.41
61 62 3.440522 GGTCTCCTTTTGCCACTGATTAC 59.559 47.826 0.00 0.00 0.00 1.89
62 63 3.686016 GGTCTCCTTTTGCCACTGATTA 58.314 45.455 0.00 0.00 0.00 1.75
63 64 2.519013 GGTCTCCTTTTGCCACTGATT 58.481 47.619 0.00 0.00 0.00 2.57
64 65 1.611673 CGGTCTCCTTTTGCCACTGAT 60.612 52.381 0.00 0.00 0.00 2.90
65 66 0.250295 CGGTCTCCTTTTGCCACTGA 60.250 55.000 0.00 0.00 0.00 3.41
66 67 1.237285 CCGGTCTCCTTTTGCCACTG 61.237 60.000 0.00 0.00 0.00 3.66
67 68 1.073199 CCGGTCTCCTTTTGCCACT 59.927 57.895 0.00 0.00 0.00 4.00
68 69 1.228154 ACCGGTCTCCTTTTGCCAC 60.228 57.895 0.00 0.00 0.00 5.01
69 70 1.072505 GACCGGTCTCCTTTTGCCA 59.927 57.895 27.64 0.00 0.00 4.92
70 71 2.033194 CGACCGGTCTCCTTTTGCC 61.033 63.158 30.92 2.61 0.00 4.52
71 72 1.005394 TCGACCGGTCTCCTTTTGC 60.005 57.895 30.92 3.41 0.00 3.68
72 73 0.389948 CCTCGACCGGTCTCCTTTTG 60.390 60.000 30.92 14.47 0.00 2.44
73 74 1.972978 CCTCGACCGGTCTCCTTTT 59.027 57.895 30.92 0.00 0.00 2.27
74 75 2.647158 GCCTCGACCGGTCTCCTTT 61.647 63.158 30.92 0.00 0.00 3.11
75 76 3.069318 GCCTCGACCGGTCTCCTT 61.069 66.667 30.92 0.00 0.00 3.36
78 79 3.878519 CTCGCCTCGACCGGTCTC 61.879 72.222 30.92 16.13 0.00 3.36
83 84 3.685214 CTTGACCTCGCCTCGACCG 62.685 68.421 0.00 0.00 0.00 4.79
84 85 2.182030 CTTGACCTCGCCTCGACC 59.818 66.667 0.00 0.00 0.00 4.79
85 86 2.507324 GCTTGACCTCGCCTCGAC 60.507 66.667 0.00 0.00 0.00 4.20
86 87 2.094757 TTTGCTTGACCTCGCCTCGA 62.095 55.000 0.00 0.00 0.00 4.04
87 88 1.630244 CTTTGCTTGACCTCGCCTCG 61.630 60.000 0.00 0.00 0.00 4.63
88 89 1.916697 GCTTTGCTTGACCTCGCCTC 61.917 60.000 0.00 0.00 0.00 4.70
89 90 1.968540 GCTTTGCTTGACCTCGCCT 60.969 57.895 0.00 0.00 0.00 5.52
90 91 1.795170 TTGCTTTGCTTGACCTCGCC 61.795 55.000 0.00 0.00 0.00 5.54
91 92 0.030638 TTTGCTTTGCTTGACCTCGC 59.969 50.000 0.00 0.00 0.00 5.03
92 93 1.927710 GCTTTGCTTTGCTTGACCTCG 60.928 52.381 0.00 0.00 0.00 4.63
93 94 1.067516 TGCTTTGCTTTGCTTGACCTC 59.932 47.619 0.00 0.00 0.00 3.85
94 95 1.113788 TGCTTTGCTTTGCTTGACCT 58.886 45.000 0.00 0.00 0.00 3.85
95 96 1.938625 TTGCTTTGCTTTGCTTGACC 58.061 45.000 0.00 0.00 0.00 4.02
96 97 2.286025 CCTTTGCTTTGCTTTGCTTGAC 59.714 45.455 0.00 0.00 0.00 3.18
97 98 2.553086 CCTTTGCTTTGCTTTGCTTGA 58.447 42.857 0.00 0.00 0.00 3.02
98 99 1.003223 GCCTTTGCTTTGCTTTGCTTG 60.003 47.619 0.00 0.00 33.53 4.01
99 100 1.302366 GCCTTTGCTTTGCTTTGCTT 58.698 45.000 0.00 0.00 33.53 3.91
100 101 0.877213 CGCCTTTGCTTTGCTTTGCT 60.877 50.000 0.00 0.00 34.43 3.91
101 102 1.566077 CGCCTTTGCTTTGCTTTGC 59.434 52.632 0.00 0.00 34.43 3.68
102 103 1.566077 GCGCCTTTGCTTTGCTTTG 59.434 52.632 0.00 0.00 34.43 2.77
103 104 1.950630 CGCGCCTTTGCTTTGCTTT 60.951 52.632 0.00 0.00 34.43 3.51
104 105 2.355009 CGCGCCTTTGCTTTGCTT 60.355 55.556 0.00 0.00 34.43 3.91
107 108 4.980903 ACGCGCGCCTTTGCTTTG 62.981 61.111 32.58 10.62 34.43 2.77
108 109 4.980903 CACGCGCGCCTTTGCTTT 62.981 61.111 32.58 3.21 34.43 3.51
123 124 2.050714 TCGACTTGACGACGGCAC 60.051 61.111 0.80 0.00 37.37 5.01
132 133 2.338620 CGTGCTGGGTCGACTTGA 59.661 61.111 16.46 0.00 0.00 3.02
133 134 3.414700 GCGTGCTGGGTCGACTTG 61.415 66.667 16.46 7.04 0.00 3.16
134 135 3.923864 TGCGTGCTGGGTCGACTT 61.924 61.111 16.46 0.00 0.00 3.01
135 136 4.664677 GTGCGTGCTGGGTCGACT 62.665 66.667 16.46 0.00 0.00 4.18
154 155 3.235292 AATGAACCGTGCGTGCGTG 62.235 57.895 0.00 0.00 0.00 5.34
155 156 2.970324 AATGAACCGTGCGTGCGT 60.970 55.556 0.00 0.00 0.00 5.24
156 157 2.499520 CAATGAACCGTGCGTGCG 60.500 61.111 0.00 0.00 0.00 5.34
157 158 0.593773 AAACAATGAACCGTGCGTGC 60.594 50.000 0.00 0.00 0.00 5.34
158 159 1.833860 AAAACAATGAACCGTGCGTG 58.166 45.000 0.00 0.00 0.00 5.34
159 160 2.159366 TCAAAAACAATGAACCGTGCGT 60.159 40.909 0.00 0.00 0.00 5.24
160 161 2.455032 TCAAAAACAATGAACCGTGCG 58.545 42.857 0.00 0.00 0.00 5.34
161 162 3.701241 TCTCAAAAACAATGAACCGTGC 58.299 40.909 0.00 0.00 0.00 5.34
162 163 5.569059 GCTATCTCAAAAACAATGAACCGTG 59.431 40.000 0.00 0.00 0.00 4.94
163 164 5.473504 AGCTATCTCAAAAACAATGAACCGT 59.526 36.000 0.00 0.00 0.00 4.83
164 165 5.942872 AGCTATCTCAAAAACAATGAACCG 58.057 37.500 0.00 0.00 0.00 4.44
165 166 7.755373 GGTTAGCTATCTCAAAAACAATGAACC 59.245 37.037 0.00 0.00 0.00 3.62
166 167 8.296713 TGGTTAGCTATCTCAAAAACAATGAAC 58.703 33.333 0.00 0.00 0.00 3.18
167 168 8.296713 GTGGTTAGCTATCTCAAAAACAATGAA 58.703 33.333 0.00 0.00 0.00 2.57
168 169 7.665559 AGTGGTTAGCTATCTCAAAAACAATGA 59.334 33.333 0.00 0.00 0.00 2.57
169 170 7.820648 AGTGGTTAGCTATCTCAAAAACAATG 58.179 34.615 0.00 0.00 0.00 2.82
170 171 8.409358 AAGTGGTTAGCTATCTCAAAAACAAT 57.591 30.769 0.00 0.00 0.00 2.71
171 172 7.817418 AAGTGGTTAGCTATCTCAAAAACAA 57.183 32.000 0.00 0.00 0.00 2.83
172 173 8.946085 CATAAGTGGTTAGCTATCTCAAAAACA 58.054 33.333 0.00 0.00 0.00 2.83
173 174 8.947115 ACATAAGTGGTTAGCTATCTCAAAAAC 58.053 33.333 0.00 0.00 0.00 2.43
174 175 9.162764 GACATAAGTGGTTAGCTATCTCAAAAA 57.837 33.333 0.00 0.00 0.00 1.94
175 176 8.318412 TGACATAAGTGGTTAGCTATCTCAAAA 58.682 33.333 0.00 0.00 0.00 2.44
176 177 7.847096 TGACATAAGTGGTTAGCTATCTCAAA 58.153 34.615 0.00 0.00 0.00 2.69
177 178 7.418337 TGACATAAGTGGTTAGCTATCTCAA 57.582 36.000 0.00 0.00 0.00 3.02
178 179 7.124298 ACTTGACATAAGTGGTTAGCTATCTCA 59.876 37.037 0.00 0.00 0.00 3.27
179 180 7.436673 CACTTGACATAAGTGGTTAGCTATCTC 59.563 40.741 11.01 0.00 42.83 2.75
180 181 7.268586 CACTTGACATAAGTGGTTAGCTATCT 58.731 38.462 11.01 0.00 42.83 1.98
181 182 7.470289 CACTTGACATAAGTGGTTAGCTATC 57.530 40.000 11.01 0.00 42.83 2.08
191 192 2.157668 GCGTGACCACTTGACATAAGTG 59.842 50.000 11.72 11.72 45.33 3.16
192 193 2.224185 TGCGTGACCACTTGACATAAGT 60.224 45.455 0.00 0.00 0.00 2.24
193 194 2.157668 GTGCGTGACCACTTGACATAAG 59.842 50.000 0.00 0.00 33.02 1.73
194 195 2.139917 GTGCGTGACCACTTGACATAA 58.860 47.619 0.00 0.00 33.02 1.90
195 196 1.790755 GTGCGTGACCACTTGACATA 58.209 50.000 0.00 0.00 33.02 2.29
196 197 1.221466 CGTGCGTGACCACTTGACAT 61.221 55.000 0.00 0.00 33.60 3.06
197 198 1.880796 CGTGCGTGACCACTTGACA 60.881 57.895 0.00 0.00 33.60 3.58
198 199 2.928361 CGTGCGTGACCACTTGAC 59.072 61.111 0.00 0.00 33.60 3.18
199 200 2.964925 GCGTGCGTGACCACTTGA 60.965 61.111 0.00 0.00 33.60 3.02
200 201 3.268603 TGCGTGCGTGACCACTTG 61.269 61.111 0.00 0.00 33.60 3.16
201 202 3.269347 GTGCGTGCGTGACCACTT 61.269 61.111 0.00 0.00 33.60 3.16
206 207 4.349871 GAACCGTGCGTGCGTGAC 62.350 66.667 0.00 0.00 0.00 3.67
211 212 3.764049 GAGACGAACCGTGCGTGC 61.764 66.667 9.93 1.37 41.37 5.34
212 213 2.769000 TACGAGACGAACCGTGCGTG 62.769 60.000 9.93 0.00 43.37 5.34
213 214 2.606961 TACGAGACGAACCGTGCGT 61.607 57.895 3.57 3.57 44.72 5.24
214 215 2.142239 GTACGAGACGAACCGTGCG 61.142 63.158 0.00 0.00 41.37 5.34
215 216 1.799121 GGTACGAGACGAACCGTGC 60.799 63.158 0.00 8.68 41.37 5.34
216 217 1.154150 GGGTACGAGACGAACCGTG 60.154 63.158 0.00 0.00 41.37 4.94
217 218 1.172180 TTGGGTACGAGACGAACCGT 61.172 55.000 0.00 0.00 45.10 4.83
218 219 0.171903 ATTGGGTACGAGACGAACCG 59.828 55.000 0.00 0.00 33.89 4.44
219 220 3.636381 GATATTGGGTACGAGACGAACC 58.364 50.000 0.00 0.00 0.00 3.62
220 221 3.002656 TCGATATTGGGTACGAGACGAAC 59.997 47.826 0.00 0.00 0.00 3.95
221 222 3.205338 TCGATATTGGGTACGAGACGAA 58.795 45.455 0.00 0.00 0.00 3.85
222 223 2.837498 TCGATATTGGGTACGAGACGA 58.163 47.619 0.00 0.00 0.00 4.20
223 224 3.724128 CGATCGATATTGGGTACGAGACG 60.724 52.174 10.26 0.00 38.12 4.18
224 225 3.434641 TCGATCGATATTGGGTACGAGAC 59.565 47.826 15.15 0.00 38.12 3.36
225 226 3.667360 TCGATCGATATTGGGTACGAGA 58.333 45.455 15.15 0.00 38.12 4.04
226 227 4.589252 GATCGATCGATATTGGGTACGAG 58.411 47.826 29.45 0.00 38.12 4.18
227 228 4.611310 GATCGATCGATATTGGGTACGA 57.389 45.455 29.45 0.36 39.01 3.43
242 243 0.791422 GACGAGACGGATCGATCGAT 59.209 55.000 29.76 29.76 45.56 3.59
243 244 0.249363 AGACGAGACGGATCGATCGA 60.249 55.000 21.86 21.86 45.56 3.59
244 245 0.162082 GAGACGAGACGGATCGATCG 59.838 60.000 18.81 9.36 45.56 3.69
245 246 0.162082 CGAGACGAGACGGATCGATC 59.838 60.000 17.36 17.36 45.56 3.69
246 247 0.249363 TCGAGACGAGACGGATCGAT 60.249 55.000 16.95 0.00 45.56 3.59
247 248 0.249363 ATCGAGACGAGACGGATCGA 60.249 55.000 16.95 18.77 45.80 3.59
249 250 1.193650 CTGATCGAGACGAGACGGATC 59.806 57.143 0.00 0.00 39.91 3.36
250 251 1.222300 CTGATCGAGACGAGACGGAT 58.778 55.000 0.00 0.00 39.91 4.18
251 252 1.429927 GCTGATCGAGACGAGACGGA 61.430 60.000 0.00 0.00 39.91 4.69
252 253 1.010574 GCTGATCGAGACGAGACGG 60.011 63.158 0.00 0.00 39.91 4.79
253 254 0.306228 ATGCTGATCGAGACGAGACG 59.694 55.000 0.00 0.00 39.91 4.18
254 255 1.752753 CATGCTGATCGAGACGAGAC 58.247 55.000 0.00 0.00 39.91 3.36
255 256 0.029967 GCATGCTGATCGAGACGAGA 59.970 55.000 11.37 0.00 39.91 4.04
256 257 0.248784 TGCATGCTGATCGAGACGAG 60.249 55.000 20.33 0.00 39.91 4.18
257 258 0.248784 CTGCATGCTGATCGAGACGA 60.249 55.000 20.33 0.00 41.13 4.20
258 259 1.819226 GCTGCATGCTGATCGAGACG 61.819 60.000 26.71 0.00 38.95 4.18
259 260 1.819226 CGCTGCATGCTGATCGAGAC 61.819 60.000 26.71 7.31 40.11 3.36
260 261 1.590792 CGCTGCATGCTGATCGAGA 60.591 57.895 26.71 0.00 40.11 4.04
261 262 1.881709 ACGCTGCATGCTGATCGAG 60.882 57.895 26.71 12.09 40.11 4.04
262 263 2.169146 CACGCTGCATGCTGATCGA 61.169 57.895 26.71 0.48 40.11 3.59
263 264 2.323447 CACGCTGCATGCTGATCG 59.677 61.111 26.71 21.93 40.11 3.69
264 265 1.062047 CACACGCTGCATGCTGATC 59.938 57.895 26.71 10.04 40.11 2.92
265 266 1.642037 GACACACGCTGCATGCTGAT 61.642 55.000 26.71 11.79 40.11 2.90
266 267 2.281002 ACACACGCTGCATGCTGA 60.281 55.556 26.71 2.89 40.11 4.26
267 268 2.175078 GACACACGCTGCATGCTG 59.825 61.111 20.33 19.80 40.11 4.41
268 269 3.417224 CGACACACGCTGCATGCT 61.417 61.111 20.33 0.00 40.11 3.79
269 270 4.450122 CCGACACACGCTGCATGC 62.450 66.667 11.82 11.82 41.07 4.06
270 271 2.733671 CTCCGACACACGCTGCATG 61.734 63.158 0.00 0.00 41.07 4.06
271 272 2.433145 CTCCGACACACGCTGCAT 60.433 61.111 0.00 0.00 41.07 3.96
272 273 2.636778 TTTCTCCGACACACGCTGCA 62.637 55.000 0.00 0.00 41.07 4.41
273 274 1.495584 TTTTCTCCGACACACGCTGC 61.496 55.000 0.00 0.00 41.07 5.25
274 275 0.934496 TTTTTCTCCGACACACGCTG 59.066 50.000 0.00 0.00 41.07 5.18
275 276 0.935196 GTTTTTCTCCGACACACGCT 59.065 50.000 0.00 0.00 41.07 5.07
276 277 0.382636 CGTTTTTCTCCGACACACGC 60.383 55.000 0.00 0.00 41.07 5.34
277 278 0.382636 GCGTTTTTCTCCGACACACG 60.383 55.000 0.00 0.00 42.18 4.49
278 279 0.041576 GGCGTTTTTCTCCGACACAC 60.042 55.000 0.00 0.00 30.77 3.82
279 280 1.161563 GGGCGTTTTTCTCCGACACA 61.162 55.000 0.00 0.00 32.45 3.72
280 281 0.883370 AGGGCGTTTTTCTCCGACAC 60.883 55.000 0.00 0.00 32.45 3.67
281 282 0.601841 GAGGGCGTTTTTCTCCGACA 60.602 55.000 0.00 0.00 32.45 4.35
282 283 1.623973 CGAGGGCGTTTTTCTCCGAC 61.624 60.000 0.00 0.00 0.00 4.79
283 284 1.373748 CGAGGGCGTTTTTCTCCGA 60.374 57.895 0.00 0.00 0.00 4.55
284 285 2.388232 CCGAGGGCGTTTTTCTCCG 61.388 63.158 0.00 0.00 35.23 4.63
285 286 2.687805 GCCGAGGGCGTTTTTCTCC 61.688 63.158 0.00 0.00 39.62 3.71
286 287 2.868196 GCCGAGGGCGTTTTTCTC 59.132 61.111 0.00 0.00 39.62 2.87
315 316 4.524318 AATGCGGCGGGAGGTACG 62.524 66.667 9.78 0.00 0.00 3.67
316 317 2.588034 GAATGCGGCGGGAGGTAC 60.588 66.667 9.78 0.00 0.00 3.34
317 318 3.857038 GGAATGCGGCGGGAGGTA 61.857 66.667 9.78 0.00 0.00 3.08
320 321 4.215742 TACGGAATGCGGCGGGAG 62.216 66.667 9.78 0.00 0.00 4.30
321 322 4.215742 CTACGGAATGCGGCGGGA 62.216 66.667 9.78 0.00 0.00 5.14
325 326 3.573491 GTGGCTACGGAATGCGGC 61.573 66.667 0.00 0.00 0.00 6.53
326 327 2.125310 TGTGGCTACGGAATGCGG 60.125 61.111 0.00 0.00 0.00 5.69
327 328 2.461110 GGTGTGGCTACGGAATGCG 61.461 63.158 0.00 0.00 0.00 4.73
328 329 0.177141 TAGGTGTGGCTACGGAATGC 59.823 55.000 0.00 0.00 0.00 3.56
329 330 1.801395 CGTAGGTGTGGCTACGGAATG 60.801 57.143 0.00 0.00 43.36 2.67
330 331 0.458669 CGTAGGTGTGGCTACGGAAT 59.541 55.000 0.00 0.00 43.36 3.01
331 332 0.608856 TCGTAGGTGTGGCTACGGAA 60.609 55.000 2.81 0.00 45.99 4.30
332 333 1.002257 TCGTAGGTGTGGCTACGGA 60.002 57.895 2.81 0.00 45.99 4.69
333 334 1.138247 GTCGTAGGTGTGGCTACGG 59.862 63.158 2.81 0.00 45.99 4.02
334 335 1.226211 CGTCGTAGGTGTGGCTACG 60.226 63.158 0.00 0.00 46.95 3.51
335 336 1.515736 GCGTCGTAGGTGTGGCTAC 60.516 63.158 0.00 0.00 0.00 3.58
336 337 0.392863 TAGCGTCGTAGGTGTGGCTA 60.393 55.000 0.00 0.00 32.29 3.93
337 338 1.676635 TAGCGTCGTAGGTGTGGCT 60.677 57.895 0.00 0.00 34.69 4.75
338 339 1.515736 GTAGCGTCGTAGGTGTGGC 60.516 63.158 0.00 0.00 0.00 5.01
339 340 1.226211 CGTAGCGTCGTAGGTGTGG 60.226 63.158 0.00 0.00 0.00 4.17
340 341 0.519999 GTCGTAGCGTCGTAGGTGTG 60.520 60.000 0.00 0.00 0.00 3.82
341 342 0.671781 AGTCGTAGCGTCGTAGGTGT 60.672 55.000 0.00 0.00 0.00 4.16
342 343 0.247576 CAGTCGTAGCGTCGTAGGTG 60.248 60.000 0.00 0.00 0.00 4.00
343 344 1.975363 GCAGTCGTAGCGTCGTAGGT 61.975 60.000 0.00 0.00 0.00 3.08
344 345 1.297451 GCAGTCGTAGCGTCGTAGG 60.297 63.158 0.00 0.00 0.00 3.18
345 346 0.586748 CAGCAGTCGTAGCGTCGTAG 60.587 60.000 0.00 0.00 37.01 3.51
346 347 1.422662 CAGCAGTCGTAGCGTCGTA 59.577 57.895 0.00 0.00 37.01 3.43
347 348 2.176055 CAGCAGTCGTAGCGTCGT 59.824 61.111 0.00 0.00 37.01 4.34
348 349 3.241059 GCAGCAGTCGTAGCGTCG 61.241 66.667 0.00 0.00 37.01 5.12
349 350 2.155194 CAGCAGCAGTCGTAGCGTC 61.155 63.158 0.00 0.00 37.01 5.19
350 351 2.126307 CAGCAGCAGTCGTAGCGT 60.126 61.111 0.00 0.00 37.01 5.07
351 352 3.549150 GCAGCAGCAGTCGTAGCG 61.549 66.667 0.00 0.00 41.58 4.26
352 353 2.125753 AGCAGCAGCAGTCGTAGC 60.126 61.111 3.17 0.00 45.49 3.58
353 354 2.451167 GCAGCAGCAGCAGTCGTAG 61.451 63.158 4.63 0.00 45.49 3.51
354 355 1.595093 TAGCAGCAGCAGCAGTCGTA 61.595 55.000 12.92 0.00 45.49 3.43
355 356 2.935740 TAGCAGCAGCAGCAGTCGT 61.936 57.895 12.92 0.00 45.49 4.34
356 357 2.125793 TAGCAGCAGCAGCAGTCG 60.126 61.111 12.92 0.00 45.49 4.18
357 358 1.375140 TGTAGCAGCAGCAGCAGTC 60.375 57.895 12.92 2.58 45.49 3.51
358 359 1.670406 GTGTAGCAGCAGCAGCAGT 60.670 57.895 12.92 0.00 45.49 4.40
359 360 2.737688 CGTGTAGCAGCAGCAGCAG 61.738 63.158 12.92 0.00 45.49 4.24
360 361 2.739671 CGTGTAGCAGCAGCAGCA 60.740 61.111 12.92 0.00 45.49 4.41
361 362 3.494336 CCGTGTAGCAGCAGCAGC 61.494 66.667 3.17 0.46 45.49 5.25
362 363 1.808799 CTCCGTGTAGCAGCAGCAG 60.809 63.158 3.17 0.00 45.49 4.24
363 364 2.262603 CTCCGTGTAGCAGCAGCA 59.737 61.111 3.17 0.00 45.49 4.41
364 365 2.510238 CCTCCGTGTAGCAGCAGC 60.510 66.667 0.00 0.00 42.56 5.25
365 366 2.185350 CCCTCCGTGTAGCAGCAG 59.815 66.667 0.00 0.00 0.00 4.24
366 367 3.390521 CCCCTCCGTGTAGCAGCA 61.391 66.667 0.00 0.00 0.00 4.41
367 368 4.162690 CCCCCTCCGTGTAGCAGC 62.163 72.222 0.00 0.00 0.00 5.25
368 369 2.363795 TCCCCCTCCGTGTAGCAG 60.364 66.667 0.00 0.00 0.00 4.24
369 370 2.363795 CTCCCCCTCCGTGTAGCA 60.364 66.667 0.00 0.00 0.00 3.49
370 371 3.155167 CCTCCCCCTCCGTGTAGC 61.155 72.222 0.00 0.00 0.00 3.58
371 372 1.455959 CTCCTCCCCCTCCGTGTAG 60.456 68.421 0.00 0.00 0.00 2.74
372 373 2.687902 CTCCTCCCCCTCCGTGTA 59.312 66.667 0.00 0.00 0.00 2.90
373 374 4.400251 CCTCCTCCCCCTCCGTGT 62.400 72.222 0.00 0.00 0.00 4.49
374 375 4.075793 TCCTCCTCCCCCTCCGTG 62.076 72.222 0.00 0.00 0.00 4.94
375 376 3.756783 CTCCTCCTCCCCCTCCGT 61.757 72.222 0.00 0.00 0.00 4.69
376 377 4.548513 CCTCCTCCTCCCCCTCCG 62.549 77.778 0.00 0.00 0.00 4.63
377 378 3.036959 TCCTCCTCCTCCCCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
378 379 2.612251 CTCCTCCTCCTCCCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
379 380 2.929738 ATCCTCCTCCTCCTCCCCCT 62.930 65.000 0.00 0.00 0.00 4.79
380 381 2.416923 ATCCTCCTCCTCCTCCCCC 61.417 68.421 0.00 0.00 0.00 5.40
381 382 1.152139 CATCCTCCTCCTCCTCCCC 60.152 68.421 0.00 0.00 0.00 4.81
382 383 0.491371 ATCATCCTCCTCCTCCTCCC 59.509 60.000 0.00 0.00 0.00 4.30
383 384 1.148867 TCATCATCCTCCTCCTCCTCC 59.851 57.143 0.00 0.00 0.00 4.30
384 385 2.109834 TCTCATCATCCTCCTCCTCCTC 59.890 54.545 0.00 0.00 0.00 3.71
385 386 2.151266 TCTCATCATCCTCCTCCTCCT 58.849 52.381 0.00 0.00 0.00 3.69
386 387 2.247358 GTCTCATCATCCTCCTCCTCC 58.753 57.143 0.00 0.00 0.00 4.30
387 388 1.885887 CGTCTCATCATCCTCCTCCTC 59.114 57.143 0.00 0.00 0.00 3.71
388 389 1.993956 CGTCTCATCATCCTCCTCCT 58.006 55.000 0.00 0.00 0.00 3.69
389 390 0.316841 GCGTCTCATCATCCTCCTCC 59.683 60.000 0.00 0.00 0.00 4.30
390 391 0.039617 CGCGTCTCATCATCCTCCTC 60.040 60.000 0.00 0.00 0.00 3.71
391 392 2.037053 CGCGTCTCATCATCCTCCT 58.963 57.895 0.00 0.00 0.00 3.69
392 393 1.663074 GCGCGTCTCATCATCCTCC 60.663 63.158 8.43 0.00 0.00 4.30
393 394 2.013483 CGCGCGTCTCATCATCCTC 61.013 63.158 24.19 0.00 0.00 3.71
394 395 2.026734 CGCGCGTCTCATCATCCT 59.973 61.111 24.19 0.00 0.00 3.24
395 396 3.696426 GCGCGCGTCTCATCATCC 61.696 66.667 32.35 6.30 0.00 3.51
396 397 4.039601 CGCGCGCGTCTCATCATC 62.040 66.667 42.49 10.04 34.35 2.92
428 429 3.782244 GTTCTCTGCACCTGCGCG 61.782 66.667 0.00 0.00 45.83 6.86
429 430 3.426568 GGTTCTCTGCACCTGCGC 61.427 66.667 0.00 0.00 45.83 6.09
430 431 1.597854 TTGGTTCTCTGCACCTGCG 60.598 57.895 0.00 0.00 45.83 5.18
431 432 1.518903 GGTTGGTTCTCTGCACCTGC 61.519 60.000 0.00 0.00 42.50 4.85
432 433 0.179020 TGGTTGGTTCTCTGCACCTG 60.179 55.000 0.00 0.00 35.07 4.00
433 434 0.179018 GTGGTTGGTTCTCTGCACCT 60.179 55.000 0.00 0.00 35.07 4.00
434 435 0.465460 TGTGGTTGGTTCTCTGCACC 60.465 55.000 0.00 0.00 34.52 5.01
435 436 1.537202 GATGTGGTTGGTTCTCTGCAC 59.463 52.381 0.00 0.00 0.00 4.57
436 437 1.877680 CGATGTGGTTGGTTCTCTGCA 60.878 52.381 0.00 0.00 0.00 4.41
437 438 0.798776 CGATGTGGTTGGTTCTCTGC 59.201 55.000 0.00 0.00 0.00 4.26
438 439 1.800586 CACGATGTGGTTGGTTCTCTG 59.199 52.381 0.00 0.00 0.00 3.35
439 440 1.878102 GCACGATGTGGTTGGTTCTCT 60.878 52.381 0.00 0.00 33.64 3.10
440 441 0.517316 GCACGATGTGGTTGGTTCTC 59.483 55.000 0.00 0.00 33.64 2.87
441 442 1.227999 CGCACGATGTGGTTGGTTCT 61.228 55.000 0.00 0.00 33.64 3.01
442 443 1.206578 CGCACGATGTGGTTGGTTC 59.793 57.895 0.00 0.00 33.64 3.62
443 444 2.903547 GCGCACGATGTGGTTGGTT 61.904 57.895 0.30 0.00 33.64 3.67
444 445 3.353836 GCGCACGATGTGGTTGGT 61.354 61.111 0.30 0.00 33.64 3.67
445 446 3.353029 TGCGCACGATGTGGTTGG 61.353 61.111 5.66 0.00 33.64 3.77
446 447 2.127270 GTGCGCACGATGTGGTTG 60.127 61.111 26.77 0.00 33.64 3.77
477 478 3.249973 GAAAACACAGGACCGCCGC 62.250 63.158 0.00 0.00 39.96 6.53
478 479 2.943653 GAAAACACAGGACCGCCG 59.056 61.111 0.00 0.00 39.96 6.46
479 480 1.890510 ACGAAAACACAGGACCGCC 60.891 57.895 0.00 0.00 0.00 6.13
480 481 1.278637 CACGAAAACACAGGACCGC 59.721 57.895 0.00 0.00 0.00 5.68
481 482 1.278637 GCACGAAAACACAGGACCG 59.721 57.895 0.00 0.00 0.00 4.79
482 483 0.307760 CTGCACGAAAACACAGGACC 59.692 55.000 0.00 0.00 0.00 4.46
483 484 3.825812 CTGCACGAAAACACAGGAC 57.174 52.632 0.00 0.00 0.00 3.85
486 487 1.400142 TGAACCTGCACGAAAACACAG 59.600 47.619 0.00 0.00 0.00 3.66
487 488 1.454201 TGAACCTGCACGAAAACACA 58.546 45.000 0.00 0.00 0.00 3.72
488 489 2.774439 ATGAACCTGCACGAAAACAC 57.226 45.000 0.00 0.00 0.00 3.32
489 490 2.797792 GCAATGAACCTGCACGAAAACA 60.798 45.455 0.00 0.00 39.69 2.83
490 491 1.786579 GCAATGAACCTGCACGAAAAC 59.213 47.619 0.00 0.00 39.69 2.43
491 492 1.406898 TGCAATGAACCTGCACGAAAA 59.593 42.857 0.00 0.00 44.67 2.29
492 493 1.028130 TGCAATGAACCTGCACGAAA 58.972 45.000 0.00 0.00 44.67 3.46
493 494 2.712984 TGCAATGAACCTGCACGAA 58.287 47.368 0.00 0.00 44.67 3.85
494 495 4.471761 TGCAATGAACCTGCACGA 57.528 50.000 0.00 0.00 44.67 4.35
498 499 0.242017 GTGGAGTGCAATGAACCTGC 59.758 55.000 0.00 0.00 40.35 4.85
499 500 0.518636 CGTGGAGTGCAATGAACCTG 59.481 55.000 0.00 0.00 0.00 4.00
500 501 1.237285 GCGTGGAGTGCAATGAACCT 61.237 55.000 0.00 0.00 0.00 3.50
501 502 1.210155 GCGTGGAGTGCAATGAACC 59.790 57.895 0.00 0.00 0.00 3.62
502 503 1.154413 CGCGTGGAGTGCAATGAAC 60.154 57.895 0.00 0.00 0.00 3.18
503 504 1.596752 ACGCGTGGAGTGCAATGAA 60.597 52.632 12.93 0.00 0.00 2.57
504 505 2.030412 ACGCGTGGAGTGCAATGA 59.970 55.556 12.93 0.00 0.00 2.57
505 506 2.174107 CACGCGTGGAGTGCAATG 59.826 61.111 31.15 0.89 32.52 2.82
532 533 1.485838 CGAGATGCATGCGAGGTGTC 61.486 60.000 14.09 6.27 0.00 3.67
533 534 1.520120 CGAGATGCATGCGAGGTGT 60.520 57.895 14.09 0.00 0.00 4.16
534 535 0.599466 ATCGAGATGCATGCGAGGTG 60.599 55.000 21.20 2.85 37.48 4.00
535 536 0.319383 GATCGAGATGCATGCGAGGT 60.319 55.000 21.20 9.83 37.48 3.85
536 537 1.342796 CGATCGAGATGCATGCGAGG 61.343 60.000 21.20 14.09 37.48 4.63
537 538 1.342796 CCGATCGAGATGCATGCGAG 61.343 60.000 18.66 11.84 37.48 5.03
538 539 1.372128 CCGATCGAGATGCATGCGA 60.372 57.895 18.66 19.62 38.51 5.10
539 540 1.612469 GACCGATCGAGATGCATGCG 61.612 60.000 18.66 8.19 0.00 4.73
540 541 2.148687 GACCGATCGAGATGCATGC 58.851 57.895 18.66 11.82 0.00 4.06
553 554 2.915775 GAGAGGATCGATCGACCGA 58.084 57.895 22.06 3.30 42.67 4.69
562 563 6.275738 GGTACCTTTACCACGAGAGGATCG 62.276 54.167 4.06 0.00 46.59 3.69
563 564 3.067883 GGTACCTTTACCACGAGAGGATC 59.932 52.174 4.06 0.00 46.59 3.36
564 565 3.029570 GGTACCTTTACCACGAGAGGAT 58.970 50.000 4.06 0.00 46.59 3.24
565 566 2.450476 GGTACCTTTACCACGAGAGGA 58.550 52.381 4.06 0.00 46.59 3.71
566 567 2.955477 GGTACCTTTACCACGAGAGG 57.045 55.000 4.06 0.00 46.59 3.69
575 576 1.728425 CGGCGAACAAGGTACCTTTAC 59.272 52.381 24.99 16.40 33.42 2.01
576 577 1.338011 CCGGCGAACAAGGTACCTTTA 60.338 52.381 24.99 0.00 33.42 1.85
577 578 0.604511 CCGGCGAACAAGGTACCTTT 60.605 55.000 24.99 11.72 33.42 3.11
578 579 1.004200 CCGGCGAACAAGGTACCTT 60.004 57.895 21.96 21.96 36.60 3.50
579 580 2.660802 CCGGCGAACAAGGTACCT 59.339 61.111 9.21 9.21 0.00 3.08
580 581 3.122971 GCCGGCGAACAAGGTACC 61.123 66.667 12.58 2.73 0.00 3.34
581 582 2.357760 TGCCGGCGAACAAGGTAC 60.358 61.111 23.90 0.00 0.00 3.34
582 583 2.047655 CTGCCGGCGAACAAGGTA 60.048 61.111 23.90 0.00 0.00 3.08
598 599 0.324460 ACTCGTACAGCTTAGGGGCT 60.324 55.000 0.00 0.00 44.10 5.19
599 600 0.179108 CACTCGTACAGCTTAGGGGC 60.179 60.000 0.00 0.00 0.00 5.80
600 601 1.471119 TCACTCGTACAGCTTAGGGG 58.529 55.000 0.00 0.00 0.00 4.79
601 602 3.130516 TCAATCACTCGTACAGCTTAGGG 59.869 47.826 0.00 0.00 0.00 3.53
602 603 4.106197 GTCAATCACTCGTACAGCTTAGG 58.894 47.826 0.00 0.00 0.00 2.69
603 604 4.733850 TGTCAATCACTCGTACAGCTTAG 58.266 43.478 0.00 0.00 0.00 2.18
604 605 4.776795 TGTCAATCACTCGTACAGCTTA 57.223 40.909 0.00 0.00 0.00 3.09
605 606 3.660501 TGTCAATCACTCGTACAGCTT 57.339 42.857 0.00 0.00 0.00 3.74
606 607 3.660501 TTGTCAATCACTCGTACAGCT 57.339 42.857 0.00 0.00 0.00 4.24
607 608 4.725556 TTTTGTCAATCACTCGTACAGC 57.274 40.909 0.00 0.00 0.00 4.40
636 640 6.172630 GGACACGAACCCCTAAAGTATTTTA 58.827 40.000 0.00 0.00 40.09 1.52
637 641 5.005740 GGACACGAACCCCTAAAGTATTTT 58.994 41.667 0.00 0.00 40.09 1.82
638 642 4.566278 GGGACACGAACCCCTAAAGTATTT 60.566 45.833 0.00 0.00 40.82 1.40
639 643 3.054875 GGGACACGAACCCCTAAAGTATT 60.055 47.826 0.00 0.00 41.38 1.89
640 644 2.502947 GGGACACGAACCCCTAAAGTAT 59.497 50.000 0.00 0.00 41.38 2.12
641 645 1.901833 GGGACACGAACCCCTAAAGTA 59.098 52.381 0.00 0.00 41.38 2.24
745 754 4.284485 GCTGTTAAAACGGTCAAAACGAT 58.716 39.130 3.75 0.00 37.60 3.73
771 780 1.144057 GTGGGCCACTATCGTCAGG 59.856 63.158 29.22 0.00 0.00 3.86
862 881 1.070289 GGTTATGACCTGATCCGACCC 59.930 57.143 0.00 0.00 42.99 4.46
1034 1072 1.113253 CATGTACTCGTCATCGTCGC 58.887 55.000 0.00 0.00 38.33 5.19
1422 1495 5.833082 ACAGTCTATTTCCACTACATAGCG 58.167 41.667 0.00 0.00 0.00 4.26
1438 1511 6.701841 CAGAAGAACAGCAACTAAACAGTCTA 59.298 38.462 0.00 0.00 0.00 2.59
1474 1548 6.650807 TCAGACATACCAATGTTTTCAGACTC 59.349 38.462 0.00 0.00 46.49 3.36
1869 1958 9.699410 ATTCCATCCTGATAATCAAACAACTTA 57.301 29.630 0.00 0.00 0.00 2.24
1906 1995 1.274167 CTGGCTTGTGCAATCCATGTT 59.726 47.619 7.79 0.00 41.91 2.71
1972 2061 5.771666 TCTCCATTTGAAGCTCAATCTTTGT 59.228 36.000 0.00 0.00 36.11 2.83
2034 2123 2.354259 CTTGACTCTGAAGGATGCACC 58.646 52.381 0.00 0.00 39.35 5.01
2035 2124 1.736681 GCTTGACTCTGAAGGATGCAC 59.263 52.381 0.00 0.00 0.00 4.57
2207 2296 3.496692 CCACTTCACTCCTCCATCACAAA 60.497 47.826 0.00 0.00 0.00 2.83
2330 2451 6.729569 ACCCATTACAGTTCTTAGGTAGTTCT 59.270 38.462 0.00 0.00 0.00 3.01
2583 2707 6.151985 AGACTAAATGCTATCTATGGGAGACG 59.848 42.308 0.00 0.00 36.87 4.18
2703 2843 7.930865 GCCAGATCTATGTTAGATTCAGTTCTT 59.069 37.037 0.00 0.00 45.16 2.52
2772 2968 1.153647 CGGTCAGGTCGCATAGCAA 60.154 57.895 0.00 0.00 0.00 3.91
2823 3019 2.203907 AGGAGGTGCCAGAGCTGT 60.204 61.111 0.00 0.00 40.80 4.40
2859 3055 0.032117 ACGTCCTCCTCCCATCATCA 60.032 55.000 0.00 0.00 0.00 3.07
2922 3118 1.133598 CTACTATGGGCAACGACGACA 59.866 52.381 0.00 0.00 37.60 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.