Multiple sequence alignment - TraesCS5A01G206800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G206800 chr5A 100.000 2496 0 0 297 2792 417314416 417311921 0.000000e+00 4610.0
1 TraesCS5A01G206800 chr5A 93.333 270 13 3 297 561 654877741 654877472 7.250000e-106 394.0
2 TraesCS5A01G206800 chr5A 100.000 61 0 0 1 61 417314712 417314652 2.270000e-21 113.0
3 TraesCS5A01G206800 chr5D 89.798 1588 82 18 644 2180 322180856 322179298 0.000000e+00 1962.0
4 TraesCS5A01G206800 chr5D 88.800 500 47 8 2219 2713 322179293 322178798 3.080000e-169 604.0
5 TraesCS5A01G206800 chr5B 90.696 1236 74 14 679 1882 373527044 373525818 0.000000e+00 1607.0
6 TraesCS5A01G206800 chr5B 87.623 913 73 25 1887 2792 373525639 373524760 0.000000e+00 1024.0
7 TraesCS5A01G206800 chr6B 93.609 266 12 3 297 561 689211608 689211347 2.610000e-105 392.0
8 TraesCS5A01G206800 chr6B 91.241 274 16 8 297 568 52118797 52118530 1.580000e-97 366.0
9 TraesCS5A01G206800 chr1B 92.884 267 18 1 297 562 375260913 375260647 1.210000e-103 387.0
10 TraesCS5A01G206800 chr1B 92.193 269 15 6 297 561 46082208 46082474 2.630000e-100 375.0
11 TraesCS5A01G206800 chr1B 91.450 269 19 3 297 561 626669771 626670039 1.580000e-97 366.0
12 TraesCS5A01G206800 chr1B 90.196 51 4 1 3 52 667835540 667835490 6.460000e-07 65.8
13 TraesCS5A01G206800 chr7B 92.193 269 13 6 297 561 123405114 123404850 9.440000e-100 374.0
14 TraesCS5A01G206800 chr7B 91.760 267 18 4 297 559 725315188 725314922 4.390000e-98 368.0
15 TraesCS5A01G206800 chr7A 92.105 266 15 5 297 561 633417571 633417311 1.220000e-98 370.0
16 TraesCS5A01G206800 chr7A 97.727 44 1 0 9 52 210819383 210819340 2.980000e-10 76.8
17 TraesCS5A01G206800 chr7A 100.000 38 0 0 15 52 634934473 634934436 1.390000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G206800 chr5A 417311921 417314712 2791 True 2361.5 4610 100.0000 1 2792 2 chr5A.!!$R2 2791
1 TraesCS5A01G206800 chr5D 322178798 322180856 2058 True 1283.0 1962 89.2990 644 2713 2 chr5D.!!$R1 2069
2 TraesCS5A01G206800 chr5B 373524760 373527044 2284 True 1315.5 1607 89.1595 679 2792 2 chr5B.!!$R1 2113

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 430 0.036388 AGGACACGTTATGGGCTGTG 60.036 55.0 0.0 0.0 38.28 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 1943 0.025898 CAACGAGCGATGCATCACTG 59.974 55.0 25.7 17.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.573261 GTAGGGAAGGGTGTGGGA 57.427 61.111 0.00 0.00 0.00 4.37
18 19 2.297937 GTAGGGAAGGGTGTGGGAG 58.702 63.158 0.00 0.00 0.00 4.30
19 20 0.252558 GTAGGGAAGGGTGTGGGAGA 60.253 60.000 0.00 0.00 0.00 3.71
20 21 0.042731 TAGGGAAGGGTGTGGGAGAG 59.957 60.000 0.00 0.00 0.00 3.20
21 22 2.301738 GGGAAGGGTGTGGGAGAGG 61.302 68.421 0.00 0.00 0.00 3.69
22 23 2.301738 GGAAGGGTGTGGGAGAGGG 61.302 68.421 0.00 0.00 0.00 4.30
23 24 1.229529 GAAGGGTGTGGGAGAGGGA 60.230 63.158 0.00 0.00 0.00 4.20
24 25 1.229658 AAGGGTGTGGGAGAGGGAG 60.230 63.158 0.00 0.00 0.00 4.30
25 26 2.689034 GGGTGTGGGAGAGGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
26 27 2.689034 GGTGTGGGAGAGGGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
27 28 3.403558 GTGTGGGAGAGGGAGGGC 61.404 72.222 0.00 0.00 0.00 5.19
59 60 3.771160 GAGAAGCGGCCTCGGGAA 61.771 66.667 0.00 0.00 36.79 3.97
60 61 3.724914 GAGAAGCGGCCTCGGGAAG 62.725 68.421 0.00 0.00 36.79 3.46
379 380 3.060000 GCGGCGGCTTTAGGGTTT 61.060 61.111 9.78 0.00 35.83 3.27
380 381 1.746239 GCGGCGGCTTTAGGGTTTA 60.746 57.895 9.78 0.00 35.83 2.01
381 382 1.712018 GCGGCGGCTTTAGGGTTTAG 61.712 60.000 9.78 0.00 35.83 1.85
382 383 0.108041 CGGCGGCTTTAGGGTTTAGA 60.108 55.000 7.61 0.00 0.00 2.10
383 384 1.676615 CGGCGGCTTTAGGGTTTAGAA 60.677 52.381 7.61 0.00 0.00 2.10
384 385 2.651455 GGCGGCTTTAGGGTTTAGAAT 58.349 47.619 0.00 0.00 0.00 2.40
385 386 2.617308 GGCGGCTTTAGGGTTTAGAATC 59.383 50.000 0.00 0.00 0.00 2.52
386 387 2.287103 GCGGCTTTAGGGTTTAGAATCG 59.713 50.000 0.00 0.00 0.00 3.34
387 388 3.528532 CGGCTTTAGGGTTTAGAATCGT 58.471 45.455 0.00 0.00 0.00 3.73
388 389 3.308866 CGGCTTTAGGGTTTAGAATCGTG 59.691 47.826 0.00 0.00 0.00 4.35
389 390 3.064958 GGCTTTAGGGTTTAGAATCGTGC 59.935 47.826 0.00 0.00 0.00 5.34
390 391 3.939592 GCTTTAGGGTTTAGAATCGTGCT 59.060 43.478 0.00 0.00 0.00 4.40
391 392 4.201822 GCTTTAGGGTTTAGAATCGTGCTG 60.202 45.833 0.00 0.00 0.00 4.41
392 393 1.739067 AGGGTTTAGAATCGTGCTGC 58.261 50.000 0.00 0.00 0.00 5.25
393 394 0.373716 GGGTTTAGAATCGTGCTGCG 59.626 55.000 0.00 0.00 43.01 5.18
405 406 3.762779 TCGTGCTGCGATAGATATCATG 58.237 45.455 5.32 0.00 45.68 3.07
406 407 3.191371 TCGTGCTGCGATAGATATCATGT 59.809 43.478 5.32 0.00 45.68 3.21
407 408 4.394920 TCGTGCTGCGATAGATATCATGTA 59.605 41.667 5.32 0.00 45.68 2.29
408 409 4.732442 CGTGCTGCGATAGATATCATGTAG 59.268 45.833 5.32 1.94 44.77 2.74
409 410 5.447818 CGTGCTGCGATAGATATCATGTAGA 60.448 44.000 5.32 0.00 44.77 2.59
410 411 6.325596 GTGCTGCGATAGATATCATGTAGAA 58.674 40.000 5.32 0.00 39.76 2.10
411 412 6.471841 GTGCTGCGATAGATATCATGTAGAAG 59.528 42.308 5.32 0.00 39.76 2.85
412 413 5.976534 GCTGCGATAGATATCATGTAGAAGG 59.023 44.000 5.32 0.00 39.76 3.46
413 414 6.183360 GCTGCGATAGATATCATGTAGAAGGA 60.183 42.308 5.32 0.00 39.76 3.36
414 415 7.089770 TGCGATAGATATCATGTAGAAGGAC 57.910 40.000 5.32 0.00 39.76 3.85
415 416 6.659242 TGCGATAGATATCATGTAGAAGGACA 59.341 38.462 5.32 0.00 39.76 4.02
416 417 6.970043 GCGATAGATATCATGTAGAAGGACAC 59.030 42.308 5.32 0.00 39.76 3.67
417 418 7.183433 CGATAGATATCATGTAGAAGGACACG 58.817 42.308 5.32 0.00 39.76 4.49
418 419 7.148390 CGATAGATATCATGTAGAAGGACACGT 60.148 40.741 5.32 0.00 39.76 4.49
419 420 6.716934 AGATATCATGTAGAAGGACACGTT 57.283 37.500 5.32 0.00 30.52 3.99
420 421 7.818997 AGATATCATGTAGAAGGACACGTTA 57.181 36.000 5.32 0.00 30.52 3.18
421 422 8.410673 AGATATCATGTAGAAGGACACGTTAT 57.589 34.615 5.32 0.00 30.52 1.89
422 423 8.300286 AGATATCATGTAGAAGGACACGTTATG 58.700 37.037 5.32 0.00 30.52 1.90
423 424 5.006153 TCATGTAGAAGGACACGTTATGG 57.994 43.478 0.00 0.00 30.52 2.74
424 425 3.880047 TGTAGAAGGACACGTTATGGG 57.120 47.619 0.00 0.00 0.00 4.00
425 426 2.093869 TGTAGAAGGACACGTTATGGGC 60.094 50.000 0.00 0.00 0.00 5.36
426 427 1.276622 AGAAGGACACGTTATGGGCT 58.723 50.000 0.00 0.00 0.00 5.19
427 428 1.066143 AGAAGGACACGTTATGGGCTG 60.066 52.381 0.00 0.00 0.00 4.85
428 429 0.690762 AAGGACACGTTATGGGCTGT 59.309 50.000 0.00 0.00 0.00 4.40
429 430 0.036388 AGGACACGTTATGGGCTGTG 60.036 55.000 0.00 0.00 38.28 3.66
430 431 1.644786 GGACACGTTATGGGCTGTGC 61.645 60.000 0.00 0.00 35.79 4.57
431 432 0.953471 GACACGTTATGGGCTGTGCA 60.953 55.000 0.00 0.00 35.79 4.57
432 433 0.536233 ACACGTTATGGGCTGTGCAA 60.536 50.000 0.00 0.00 35.79 4.08
433 434 0.810648 CACGTTATGGGCTGTGCAAT 59.189 50.000 0.00 0.00 0.00 3.56
434 435 1.094785 ACGTTATGGGCTGTGCAATC 58.905 50.000 0.00 0.00 0.00 2.67
435 436 1.340017 ACGTTATGGGCTGTGCAATCT 60.340 47.619 0.00 0.00 0.00 2.40
436 437 1.331756 CGTTATGGGCTGTGCAATCTC 59.668 52.381 0.00 0.00 0.00 2.75
437 438 1.331756 GTTATGGGCTGTGCAATCTCG 59.668 52.381 0.00 0.00 0.00 4.04
438 439 0.829990 TATGGGCTGTGCAATCTCGA 59.170 50.000 0.00 0.00 0.00 4.04
439 440 0.182061 ATGGGCTGTGCAATCTCGAT 59.818 50.000 0.00 0.00 0.00 3.59
440 441 0.745486 TGGGCTGTGCAATCTCGATG 60.745 55.000 0.00 0.00 0.00 3.84
441 442 0.745845 GGGCTGTGCAATCTCGATGT 60.746 55.000 0.00 0.00 0.00 3.06
442 443 1.473257 GGGCTGTGCAATCTCGATGTA 60.473 52.381 0.00 0.00 0.00 2.29
443 444 2.487934 GGCTGTGCAATCTCGATGTAT 58.512 47.619 0.00 0.00 0.00 2.29
444 445 2.874701 GGCTGTGCAATCTCGATGTATT 59.125 45.455 0.00 0.00 0.00 1.89
445 446 3.303593 GGCTGTGCAATCTCGATGTATTG 60.304 47.826 9.68 9.68 36.40 1.90
446 447 3.557185 GCTGTGCAATCTCGATGTATTGA 59.443 43.478 15.55 0.00 35.53 2.57
447 448 4.212847 GCTGTGCAATCTCGATGTATTGAT 59.787 41.667 15.55 0.00 35.53 2.57
448 449 5.614231 GCTGTGCAATCTCGATGTATTGATC 60.614 44.000 15.55 9.54 35.53 2.92
449 450 4.445385 TGTGCAATCTCGATGTATTGATCG 59.555 41.667 15.55 0.00 45.43 3.69
450 451 3.989817 TGCAATCTCGATGTATTGATCGG 59.010 43.478 15.55 0.00 44.41 4.18
451 452 3.990469 GCAATCTCGATGTATTGATCGGT 59.010 43.478 15.55 0.00 44.41 4.69
452 453 4.143242 GCAATCTCGATGTATTGATCGGTG 60.143 45.833 15.55 0.00 44.41 4.94
453 454 3.013276 TCTCGATGTATTGATCGGTGC 57.987 47.619 0.00 0.00 44.41 5.01
454 455 2.360801 TCTCGATGTATTGATCGGTGCA 59.639 45.455 0.00 0.00 44.41 4.57
455 456 2.469826 TCGATGTATTGATCGGTGCAC 58.530 47.619 8.80 8.80 44.41 4.57
456 457 1.526887 CGATGTATTGATCGGTGCACC 59.473 52.381 26.78 26.78 41.29 5.01
457 458 2.560504 GATGTATTGATCGGTGCACCA 58.439 47.619 34.16 21.66 35.14 4.17
458 459 2.022764 TGTATTGATCGGTGCACCAG 57.977 50.000 34.16 25.45 35.14 4.00
459 460 1.299541 GTATTGATCGGTGCACCAGG 58.700 55.000 34.16 19.77 35.14 4.45
460 461 0.463654 TATTGATCGGTGCACCAGGC 60.464 55.000 34.16 21.79 45.13 4.85
474 475 4.817517 GCACCAGGCACGTATATATAAGT 58.182 43.478 5.59 5.59 43.97 2.24
475 476 5.957798 GCACCAGGCACGTATATATAAGTA 58.042 41.667 10.46 0.00 43.97 2.24
476 477 5.803967 GCACCAGGCACGTATATATAAGTAC 59.196 44.000 10.46 5.88 43.97 2.73
477 478 6.570957 GCACCAGGCACGTATATATAAGTACA 60.571 42.308 10.46 0.00 43.97 2.90
478 479 7.027760 CACCAGGCACGTATATATAAGTACAG 58.972 42.308 10.46 5.10 0.00 2.74
479 480 6.944290 ACCAGGCACGTATATATAAGTACAGA 59.056 38.462 10.46 0.00 0.00 3.41
480 481 7.614583 ACCAGGCACGTATATATAAGTACAGAT 59.385 37.037 10.46 0.00 0.00 2.90
481 482 7.915923 CCAGGCACGTATATATAAGTACAGATG 59.084 40.741 10.46 6.24 0.00 2.90
482 483 8.459635 CAGGCACGTATATATAAGTACAGATGT 58.540 37.037 10.46 0.00 0.00 3.06
483 484 8.459635 AGGCACGTATATATAAGTACAGATGTG 58.540 37.037 10.46 4.01 0.00 3.21
484 485 7.701078 GGCACGTATATATAAGTACAGATGTGG 59.299 40.741 10.46 0.00 0.00 4.17
485 486 7.701078 GCACGTATATATAAGTACAGATGTGGG 59.299 40.741 10.46 0.00 0.00 4.61
486 487 8.737175 CACGTATATATAAGTACAGATGTGGGT 58.263 37.037 10.46 0.00 0.00 4.51
487 488 8.954350 ACGTATATATAAGTACAGATGTGGGTC 58.046 37.037 9.27 0.00 0.00 4.46
488 489 8.953313 CGTATATATAAGTACAGATGTGGGTCA 58.047 37.037 0.00 0.00 0.00 4.02
501 502 4.986054 TGTGGGTCACAACCTTAACTAT 57.014 40.909 0.00 0.00 45.66 2.12
503 504 5.797051 TGTGGGTCACAACCTTAACTATAC 58.203 41.667 0.00 0.00 45.66 1.47
504 505 5.307456 TGTGGGTCACAACCTTAACTATACA 59.693 40.000 0.00 0.00 45.66 2.29
505 506 6.183361 TGTGGGTCACAACCTTAACTATACAA 60.183 38.462 0.00 0.00 45.66 2.41
506 507 6.370718 GTGGGTCACAACCTTAACTATACAAG 59.629 42.308 0.00 0.00 45.66 3.16
507 508 6.270463 TGGGTCACAACCTTAACTATACAAGA 59.730 38.462 0.00 0.00 45.66 3.02
508 509 7.163441 GGGTCACAACCTTAACTATACAAGAA 58.837 38.462 0.00 0.00 45.66 2.52
509 510 7.662669 GGGTCACAACCTTAACTATACAAGAAA 59.337 37.037 0.00 0.00 45.66 2.52
510 511 9.059260 GGTCACAACCTTAACTATACAAGAAAA 57.941 33.333 0.00 0.00 42.80 2.29
511 512 9.874215 GTCACAACCTTAACTATACAAGAAAAC 57.126 33.333 0.00 0.00 0.00 2.43
512 513 9.616156 TCACAACCTTAACTATACAAGAAAACA 57.384 29.630 0.00 0.00 0.00 2.83
513 514 9.878599 CACAACCTTAACTATACAAGAAAACAG 57.121 33.333 0.00 0.00 0.00 3.16
514 515 9.063615 ACAACCTTAACTATACAAGAAAACAGG 57.936 33.333 0.00 0.00 0.00 4.00
515 516 9.280174 CAACCTTAACTATACAAGAAAACAGGA 57.720 33.333 0.00 0.00 0.00 3.86
516 517 9.503399 AACCTTAACTATACAAGAAAACAGGAG 57.497 33.333 0.00 0.00 0.00 3.69
517 518 8.101419 ACCTTAACTATACAAGAAAACAGGAGG 58.899 37.037 0.00 0.00 0.00 4.30
518 519 8.101419 CCTTAACTATACAAGAAAACAGGAGGT 58.899 37.037 0.00 0.00 0.00 3.85
519 520 8.842358 TTAACTATACAAGAAAACAGGAGGTG 57.158 34.615 0.00 0.00 0.00 4.00
520 521 5.805728 ACTATACAAGAAAACAGGAGGTGG 58.194 41.667 0.00 0.00 0.00 4.61
521 522 4.993705 ATACAAGAAAACAGGAGGTGGA 57.006 40.909 0.00 0.00 0.00 4.02
522 523 2.932261 ACAAGAAAACAGGAGGTGGAC 58.068 47.619 0.00 0.00 0.00 4.02
523 524 2.230660 CAAGAAAACAGGAGGTGGACC 58.769 52.381 0.00 0.00 0.00 4.46
524 525 0.771755 AGAAAACAGGAGGTGGACCC 59.228 55.000 0.00 0.00 36.42 4.46
526 527 1.982958 GAAAACAGGAGGTGGACCCTA 59.017 52.381 0.00 0.00 46.51 3.53
527 528 1.359168 AAACAGGAGGTGGACCCTAC 58.641 55.000 0.00 0.00 46.51 3.18
530 531 4.553144 GGAGGTGGACCCTACACA 57.447 61.111 0.00 0.00 46.51 3.72
531 532 1.980844 GGAGGTGGACCCTACACAC 59.019 63.158 0.00 0.00 46.51 3.82
532 533 0.834687 GGAGGTGGACCCTACACACA 60.835 60.000 0.00 0.00 46.51 3.72
533 534 1.053424 GAGGTGGACCCTACACACAA 58.947 55.000 0.00 0.00 46.51 3.33
534 535 1.418637 GAGGTGGACCCTACACACAAA 59.581 52.381 0.00 0.00 46.51 2.83
535 536 2.039879 GAGGTGGACCCTACACACAAAT 59.960 50.000 0.00 0.00 46.51 2.32
536 537 3.253220 AGGTGGACCCTACACACAAATA 58.747 45.455 0.00 0.00 43.87 1.40
537 538 3.850173 AGGTGGACCCTACACACAAATAT 59.150 43.478 0.00 0.00 43.87 1.28
538 539 5.034200 AGGTGGACCCTACACACAAATATA 58.966 41.667 0.00 0.00 43.87 0.86
539 540 5.104652 AGGTGGACCCTACACACAAATATAC 60.105 44.000 0.00 0.00 43.87 1.47
540 541 5.338544 GGTGGACCCTACACACAAATATACA 60.339 44.000 0.00 0.00 40.54 2.29
541 542 5.583457 GTGGACCCTACACACAAATATACAC 59.417 44.000 0.00 0.00 38.67 2.90
542 543 4.807304 GGACCCTACACACAAATATACACG 59.193 45.833 0.00 0.00 0.00 4.49
543 544 5.410355 ACCCTACACACAAATATACACGT 57.590 39.130 0.00 0.00 0.00 4.49
544 545 6.405731 GGACCCTACACACAAATATACACGTA 60.406 42.308 0.00 0.00 0.00 3.57
545 546 6.332630 ACCCTACACACAAATATACACGTAC 58.667 40.000 0.00 0.00 0.00 3.67
546 547 6.071447 ACCCTACACACAAATATACACGTACA 60.071 38.462 0.00 0.00 0.00 2.90
547 548 6.254157 CCCTACACACAAATATACACGTACAC 59.746 42.308 0.00 0.00 0.00 2.90
548 549 6.807720 CCTACACACAAATATACACGTACACA 59.192 38.462 0.00 0.00 0.00 3.72
549 550 7.328982 CCTACACACAAATATACACGTACACAA 59.671 37.037 0.00 0.00 0.00 3.33
550 551 7.661127 ACACACAAATATACACGTACACAAT 57.339 32.000 0.00 0.00 0.00 2.71
551 552 8.760103 ACACACAAATATACACGTACACAATA 57.240 30.769 0.00 0.00 0.00 1.90
552 553 9.373603 ACACACAAATATACACGTACACAATAT 57.626 29.630 0.00 0.00 0.00 1.28
562 563 9.811995 ATACACGTACACAATATACTCAACAAT 57.188 29.630 0.00 0.00 0.00 2.71
563 564 8.181487 ACACGTACACAATATACTCAACAATC 57.819 34.615 0.00 0.00 0.00 2.67
564 565 7.008901 ACACGTACACAATATACTCAACAATCG 59.991 37.037 0.00 0.00 0.00 3.34
565 566 6.020121 ACGTACACAATATACTCAACAATCGC 60.020 38.462 0.00 0.00 0.00 4.58
566 567 6.020201 CGTACACAATATACTCAACAATCGCA 60.020 38.462 0.00 0.00 0.00 5.10
567 568 6.349973 ACACAATATACTCAACAATCGCAG 57.650 37.500 0.00 0.00 0.00 5.18
568 569 6.106003 ACACAATATACTCAACAATCGCAGA 58.894 36.000 0.00 0.00 45.75 4.26
569 570 6.256539 ACACAATATACTCAACAATCGCAGAG 59.743 38.462 0.00 0.00 43.63 3.35
570 571 6.476706 CACAATATACTCAACAATCGCAGAGA 59.523 38.462 0.00 0.00 43.63 3.10
571 572 7.010460 CACAATATACTCAACAATCGCAGAGAA 59.990 37.037 0.00 0.00 43.63 2.87
572 573 7.223582 ACAATATACTCAACAATCGCAGAGAAG 59.776 37.037 0.00 0.00 43.63 2.85
573 574 3.667497 ACTCAACAATCGCAGAGAAGA 57.333 42.857 0.00 0.00 43.63 2.87
574 575 3.321497 ACTCAACAATCGCAGAGAAGAC 58.679 45.455 0.00 0.00 43.63 3.01
575 576 3.006323 ACTCAACAATCGCAGAGAAGACT 59.994 43.478 0.00 0.00 43.63 3.24
576 577 4.218635 ACTCAACAATCGCAGAGAAGACTA 59.781 41.667 0.00 0.00 43.63 2.59
577 578 4.738124 TCAACAATCGCAGAGAAGACTAG 58.262 43.478 0.00 0.00 43.63 2.57
578 579 4.459337 TCAACAATCGCAGAGAAGACTAGA 59.541 41.667 0.00 0.00 43.63 2.43
579 580 5.048013 TCAACAATCGCAGAGAAGACTAGAA 60.048 40.000 0.00 0.00 43.63 2.10
580 581 5.590530 ACAATCGCAGAGAAGACTAGAAT 57.409 39.130 0.00 0.00 43.63 2.40
581 582 6.701145 ACAATCGCAGAGAAGACTAGAATA 57.299 37.500 0.00 0.00 43.63 1.75
582 583 7.101652 ACAATCGCAGAGAAGACTAGAATAA 57.898 36.000 0.00 0.00 43.63 1.40
583 584 7.548097 ACAATCGCAGAGAAGACTAGAATAAA 58.452 34.615 0.00 0.00 43.63 1.40
584 585 8.200792 ACAATCGCAGAGAAGACTAGAATAAAT 58.799 33.333 0.00 0.00 43.63 1.40
585 586 8.698854 CAATCGCAGAGAAGACTAGAATAAATC 58.301 37.037 0.00 0.00 43.63 2.17
586 587 6.740110 TCGCAGAGAAGACTAGAATAAATCC 58.260 40.000 0.00 0.00 0.00 3.01
587 588 6.321435 TCGCAGAGAAGACTAGAATAAATCCA 59.679 38.462 0.00 0.00 0.00 3.41
588 589 6.640499 CGCAGAGAAGACTAGAATAAATCCAG 59.360 42.308 0.00 0.00 0.00 3.86
589 590 7.469318 CGCAGAGAAGACTAGAATAAATCCAGA 60.469 40.741 0.00 0.00 0.00 3.86
590 591 8.200792 GCAGAGAAGACTAGAATAAATCCAGAA 58.799 37.037 0.00 0.00 0.00 3.02
595 596 9.943163 GAAGACTAGAATAAATCCAGAAAATGC 57.057 33.333 0.00 0.00 0.00 3.56
596 597 9.466497 AAGACTAGAATAAATCCAGAAAATGCA 57.534 29.630 0.00 0.00 0.00 3.96
597 598 9.466497 AGACTAGAATAAATCCAGAAAATGCAA 57.534 29.630 0.00 0.00 0.00 4.08
604 605 9.603921 AATAAATCCAGAAAATGCAAATACTGG 57.396 29.630 20.02 20.02 44.02 4.00
605 606 6.610075 AATCCAGAAAATGCAAATACTGGT 57.390 33.333 22.92 13.46 43.39 4.00
606 607 5.389859 TCCAGAAAATGCAAATACTGGTG 57.610 39.130 22.92 8.01 43.39 4.17
607 608 3.928375 CCAGAAAATGCAAATACTGGTGC 59.072 43.478 18.67 0.00 39.68 5.01
608 609 3.928375 CAGAAAATGCAAATACTGGTGCC 59.072 43.478 0.00 0.00 40.14 5.01
609 610 3.577848 AGAAAATGCAAATACTGGTGCCA 59.422 39.130 0.00 0.00 40.14 4.92
610 611 4.040217 AGAAAATGCAAATACTGGTGCCAA 59.960 37.500 0.00 0.00 40.14 4.52
611 612 4.348863 AAATGCAAATACTGGTGCCAAA 57.651 36.364 0.00 0.00 40.14 3.28
612 613 4.348863 AATGCAAATACTGGTGCCAAAA 57.651 36.364 0.00 0.00 40.14 2.44
613 614 4.556592 ATGCAAATACTGGTGCCAAAAT 57.443 36.364 0.00 0.00 40.14 1.82
614 615 4.348863 TGCAAATACTGGTGCCAAAATT 57.651 36.364 0.00 0.00 40.14 1.82
615 616 4.712476 TGCAAATACTGGTGCCAAAATTT 58.288 34.783 0.00 0.00 40.14 1.82
616 617 5.858381 TGCAAATACTGGTGCCAAAATTTA 58.142 33.333 8.97 0.00 40.14 1.40
617 618 5.931146 TGCAAATACTGGTGCCAAAATTTAG 59.069 36.000 8.97 0.00 40.14 1.85
618 619 5.351189 GCAAATACTGGTGCCAAAATTTAGG 59.649 40.000 8.97 0.00 34.58 2.69
619 620 6.696411 CAAATACTGGTGCCAAAATTTAGGA 58.304 36.000 8.97 0.00 0.00 2.94
620 621 5.914898 ATACTGGTGCCAAAATTTAGGAC 57.085 39.130 0.00 0.00 0.00 3.85
621 622 3.844640 ACTGGTGCCAAAATTTAGGACT 58.155 40.909 11.04 0.00 0.00 3.85
622 623 4.223144 ACTGGTGCCAAAATTTAGGACTT 58.777 39.130 11.04 0.00 0.00 3.01
623 624 4.039124 ACTGGTGCCAAAATTTAGGACTTG 59.961 41.667 11.04 7.75 0.00 3.16
624 625 4.219115 TGGTGCCAAAATTTAGGACTTGA 58.781 39.130 11.04 0.00 0.00 3.02
625 626 4.651503 TGGTGCCAAAATTTAGGACTTGAA 59.348 37.500 11.04 0.00 0.00 2.69
626 627 5.306678 TGGTGCCAAAATTTAGGACTTGAAT 59.693 36.000 11.04 0.00 0.00 2.57
627 628 5.869344 GGTGCCAAAATTTAGGACTTGAATC 59.131 40.000 11.04 0.00 0.00 2.52
628 629 5.869344 GTGCCAAAATTTAGGACTTGAATCC 59.131 40.000 5.78 0.00 39.28 3.01
638 639 4.394439 GGACTTGAATCCTGGTAGACTC 57.606 50.000 0.00 0.00 35.68 3.36
639 640 3.769844 GGACTTGAATCCTGGTAGACTCA 59.230 47.826 0.00 0.00 35.68 3.41
640 641 4.382147 GGACTTGAATCCTGGTAGACTCAC 60.382 50.000 0.00 0.00 35.68 3.51
641 642 3.515901 ACTTGAATCCTGGTAGACTCACC 59.484 47.826 0.00 0.00 39.20 4.02
642 643 3.184382 TGAATCCTGGTAGACTCACCA 57.816 47.619 0.00 0.00 46.46 4.17
647 648 3.042682 TCCTGGTAGACTCACCACAAAA 58.957 45.455 0.00 0.00 43.76 2.44
674 675 7.621796 ACCTAACCACCTTAAGCTATATATGC 58.378 38.462 0.00 0.00 0.00 3.14
675 676 7.458170 ACCTAACCACCTTAAGCTATATATGCT 59.542 37.037 0.00 0.00 43.32 3.79
686 687 6.274157 AGCTATATATGCTTAGTTCGCTGT 57.726 37.500 0.00 0.00 37.52 4.40
691 692 9.958234 CTATATATGCTTAGTTCGCTGTATCAT 57.042 33.333 0.00 0.00 0.00 2.45
701 702 6.810911 AGTTCGCTGTATCATCAAGATTAGT 58.189 36.000 0.00 0.00 38.19 2.24
708 709 7.274468 GCTGTATCATCAAGATTAGTATCCACG 59.726 40.741 0.00 0.00 38.19 4.94
712 713 3.702330 TCAAGATTAGTATCCACGCACG 58.298 45.455 0.00 0.00 0.00 5.34
782 793 7.017651 TCTGTTTTCTTCTCTTTATTCCCTCCT 59.982 37.037 0.00 0.00 0.00 3.69
785 796 8.948145 GTTTTCTTCTCTTTATTCCCTCCTTAC 58.052 37.037 0.00 0.00 0.00 2.34
809 820 4.414852 CGACAAGCAAAGGTTATTCATGG 58.585 43.478 0.00 0.00 0.00 3.66
888 916 9.401873 TCCATATGTGTAGTATAAATTCGAACG 57.598 33.333 0.00 0.00 0.00 3.95
934 962 8.546597 AATTGGCATACATTAAACCAACTTTC 57.453 30.769 0.00 0.00 42.81 2.62
946 974 3.837355 ACCAACTTTCAGCCTTCTTCAT 58.163 40.909 0.00 0.00 0.00 2.57
956 988 7.667575 TTCAGCCTTCTTCATAGATAGTTCT 57.332 36.000 0.00 0.00 35.90 3.01
961 993 6.686630 CCTTCTTCATAGATAGTTCTCGCAT 58.313 40.000 0.00 0.00 33.17 4.73
962 994 7.151308 CCTTCTTCATAGATAGTTCTCGCATT 58.849 38.462 0.00 0.00 33.17 3.56
963 995 8.300286 CCTTCTTCATAGATAGTTCTCGCATTA 58.700 37.037 0.00 0.00 33.17 1.90
964 996 9.123709 CTTCTTCATAGATAGTTCTCGCATTAC 57.876 37.037 0.00 0.00 33.17 1.89
965 997 8.397575 TCTTCATAGATAGTTCTCGCATTACT 57.602 34.615 0.00 0.00 33.17 2.24
966 998 8.508062 TCTTCATAGATAGTTCTCGCATTACTC 58.492 37.037 0.00 0.00 33.17 2.59
986 1018 0.465705 TTCCGATCCAGCATCAGGAC 59.534 55.000 0.00 0.00 38.13 3.85
990 1022 1.307097 GATCCAGCATCAGGACAAGC 58.693 55.000 0.00 0.00 38.13 4.01
993 1025 1.310933 CCAGCATCAGGACAAGCCAC 61.311 60.000 0.00 0.00 40.02 5.01
1046 1081 0.030504 TCGACGGTTGTTGCGTCTTA 59.969 50.000 0.00 0.00 0.00 2.10
1053 1088 0.470766 TTGTTGCGTCTTACACCCCT 59.529 50.000 0.00 0.00 0.00 4.79
1054 1089 1.340088 TGTTGCGTCTTACACCCCTA 58.660 50.000 0.00 0.00 0.00 3.53
1055 1090 1.903860 TGTTGCGTCTTACACCCCTAT 59.096 47.619 0.00 0.00 0.00 2.57
1056 1091 2.277084 GTTGCGTCTTACACCCCTATG 58.723 52.381 0.00 0.00 0.00 2.23
1057 1092 1.855295 TGCGTCTTACACCCCTATGA 58.145 50.000 0.00 0.00 0.00 2.15
1058 1093 1.479323 TGCGTCTTACACCCCTATGAC 59.521 52.381 0.00 0.00 0.00 3.06
1246 1281 4.332591 CCCCCACCGGTGCGTAAA 62.333 66.667 29.75 0.00 0.00 2.01
1283 1318 7.407393 TTCATCCTTCATGCATGTCAAATAA 57.593 32.000 25.43 10.88 31.70 1.40
1288 1326 6.263842 TCCTTCATGCATGTCAAATAATCTCC 59.736 38.462 25.43 0.00 0.00 3.71
1293 1331 6.441093 TGCATGTCAAATAATCTCCTTCAC 57.559 37.500 0.00 0.00 0.00 3.18
1311 1349 5.428496 TTCACAGCTGTTGAAATCTGAAG 57.572 39.130 18.94 0.87 0.00 3.02
1315 1353 4.514441 ACAGCTGTTGAAATCTGAAGTCTG 59.486 41.667 15.25 0.00 0.00 3.51
1316 1354 4.514441 CAGCTGTTGAAATCTGAAGTCTGT 59.486 41.667 5.25 0.00 0.00 3.41
1317 1355 4.514441 AGCTGTTGAAATCTGAAGTCTGTG 59.486 41.667 0.00 0.00 0.00 3.66
1318 1356 4.274459 GCTGTTGAAATCTGAAGTCTGTGT 59.726 41.667 0.00 0.00 0.00 3.72
1319 1357 5.739752 TGTTGAAATCTGAAGTCTGTGTG 57.260 39.130 0.00 0.00 0.00 3.82
1320 1358 5.185454 TGTTGAAATCTGAAGTCTGTGTGT 58.815 37.500 0.00 0.00 0.00 3.72
1321 1359 5.065090 TGTTGAAATCTGAAGTCTGTGTGTG 59.935 40.000 0.00 0.00 0.00 3.82
1322 1360 4.769688 TGAAATCTGAAGTCTGTGTGTGT 58.230 39.130 0.00 0.00 0.00 3.72
1323 1361 4.571984 TGAAATCTGAAGTCTGTGTGTGTG 59.428 41.667 0.00 0.00 0.00 3.82
1491 1537 2.184322 GGCGAGGACATGCTCGAA 59.816 61.111 24.55 0.00 44.85 3.71
1504 1550 2.350522 TGCTCGAAATCAAGAGGAAGC 58.649 47.619 0.00 0.00 35.19 3.86
1753 1799 1.135315 CCGAGCTCAAACAATGCCG 59.865 57.895 15.40 0.00 0.00 5.69
1754 1800 1.512734 CGAGCTCAAACAATGCCGC 60.513 57.895 15.40 0.00 0.00 6.53
1755 1801 1.153958 GAGCTCAAACAATGCCGCC 60.154 57.895 9.40 0.00 0.00 6.13
1882 1942 7.657364 CGAAATAAGCAGCTTATGTTTGAAAC 58.343 34.615 25.41 8.50 36.85 2.78
1883 1943 7.201350 CGAAATAAGCAGCTTATGTTTGAAACC 60.201 37.037 25.41 7.87 36.85 3.27
1893 2127 4.877378 ATGTTTGAAACCAGTGATGCAT 57.123 36.364 0.00 0.00 0.00 3.96
1961 2195 8.994429 TTGTTCAAAATTGAGCTCTTTTACAA 57.006 26.923 16.19 16.90 38.92 2.41
2111 2350 3.423154 CGGGGCGCAGTTTCTCAC 61.423 66.667 10.83 0.00 0.00 3.51
2125 2364 3.891586 CTCACGTCCACGACCACGG 62.892 68.421 6.03 0.00 44.46 4.94
2159 2400 2.302733 GGCATGATTTGGGAAAACTGGT 59.697 45.455 0.00 0.00 0.00 4.00
2180 2423 3.487120 ACCCAAGACGCTAAGAAGTTT 57.513 42.857 0.00 0.00 0.00 2.66
2181 2424 3.816994 ACCCAAGACGCTAAGAAGTTTT 58.183 40.909 0.00 0.00 0.00 2.43
2183 2426 5.370679 ACCCAAGACGCTAAGAAGTTTTTA 58.629 37.500 0.00 0.00 0.00 1.52
2184 2427 5.469084 ACCCAAGACGCTAAGAAGTTTTTAG 59.531 40.000 8.47 8.47 0.00 1.85
2185 2428 5.106673 CCCAAGACGCTAAGAAGTTTTTAGG 60.107 44.000 13.43 7.40 0.00 2.69
2186 2429 5.699458 CCAAGACGCTAAGAAGTTTTTAGGA 59.301 40.000 13.43 0.00 0.00 2.94
2187 2430 6.204108 CCAAGACGCTAAGAAGTTTTTAGGAA 59.796 38.462 13.43 0.00 0.00 3.36
2188 2431 7.255001 CCAAGACGCTAAGAAGTTTTTAGGAAA 60.255 37.037 13.43 0.00 0.00 3.13
2189 2432 7.797038 AGACGCTAAGAAGTTTTTAGGAAAA 57.203 32.000 13.43 0.00 32.53 2.29
2190 2433 8.217131 AGACGCTAAGAAGTTTTTAGGAAAAA 57.783 30.769 13.43 0.00 36.56 1.94
2211 2454 4.568152 AAAAACGCTAAGTTGATGCACT 57.432 36.364 0.00 0.00 43.37 4.40
2217 2460 2.159462 GCTAAGTTGATGCACTTGCTCC 60.159 50.000 2.33 0.00 42.66 4.70
2223 2466 1.242076 GATGCACTTGCTCCTTGTGT 58.758 50.000 2.33 0.00 42.66 3.72
2230 2473 2.016318 CTTGCTCCTTGTGTTGTGTGA 58.984 47.619 0.00 0.00 0.00 3.58
2245 2488 4.555348 TGTGTGATATCGTGTGCGTATA 57.445 40.909 0.00 0.00 39.49 1.47
2255 2499 3.379057 TCGTGTGCGTATAAGATCTTGGA 59.621 43.478 18.47 2.61 39.49 3.53
2298 2542 8.829612 CATTTATTTTCTGAAATACCAATGGCC 58.170 33.333 0.00 0.00 37.43 5.36
2319 2564 7.689299 TGGCCATACATTAAGTAGCAGATATT 58.311 34.615 0.00 0.00 35.85 1.28
2421 2669 1.803334 GATGACACCCTGTACGCAAA 58.197 50.000 0.00 0.00 0.00 3.68
2423 2671 2.264005 TGACACCCTGTACGCAAATT 57.736 45.000 0.00 0.00 0.00 1.82
2428 2676 1.472480 ACCCTGTACGCAAATTGATGC 59.528 47.619 0.00 0.00 42.94 3.91
2438 2686 1.098050 AAATTGATGCCGCCTCTGAC 58.902 50.000 0.00 0.00 0.00 3.51
2464 2712 4.695455 TCCATCTTAGCGAAGAAAACTTGG 59.305 41.667 13.49 14.95 44.85 3.61
2496 2744 2.481185 GAGTTTGTAAAATCGGCGGTCA 59.519 45.455 7.21 0.00 0.00 4.02
2501 2749 2.285977 GTAAAATCGGCGGTCAGGAAT 58.714 47.619 7.21 0.00 0.00 3.01
2504 2752 0.251916 AATCGGCGGTCAGGAATTCA 59.748 50.000 7.21 0.00 0.00 2.57
2518 2766 2.751259 GGAATTCAGTGATGCAGAGCAA 59.249 45.455 7.93 0.00 43.62 3.91
2605 2853 2.107705 GAGAACGCTCCAGATCCGA 58.892 57.895 0.00 0.00 35.01 4.55
2701 2949 5.163216 GGAGATGGAGGATCAAGACAGAAAT 60.163 44.000 0.00 0.00 36.25 2.17
2709 2957 3.744238 TCAAGACAGAAATCCACGACA 57.256 42.857 0.00 0.00 0.00 4.35
2714 2962 3.259374 AGACAGAAATCCACGACACATCT 59.741 43.478 0.00 0.00 0.00 2.90
2715 2963 3.329386 ACAGAAATCCACGACACATCTG 58.671 45.455 0.00 0.00 38.91 2.90
2720 2968 1.919240 TCCACGACACATCTGTAGGT 58.081 50.000 0.00 0.00 0.00 3.08
2746 2996 2.524569 TCGAGACAGACATGCACAAA 57.475 45.000 0.00 0.00 0.00 2.83
2782 3032 6.037172 CCATATAACAAGACGAAGGGACAAAG 59.963 42.308 0.00 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.252558 TCTCCCACACCCTTCCCTAC 60.253 60.000 0.00 0.00 0.00 3.18
1 2 0.042731 CTCTCCCACACCCTTCCCTA 59.957 60.000 0.00 0.00 0.00 3.53
2 3 1.229658 CTCTCCCACACCCTTCCCT 60.230 63.158 0.00 0.00 0.00 4.20
3 4 2.301738 CCTCTCCCACACCCTTCCC 61.302 68.421 0.00 0.00 0.00 3.97
4 5 2.301738 CCCTCTCCCACACCCTTCC 61.302 68.421 0.00 0.00 0.00 3.46
5 6 1.229529 TCCCTCTCCCACACCCTTC 60.230 63.158 0.00 0.00 0.00 3.46
6 7 1.229658 CTCCCTCTCCCACACCCTT 60.230 63.158 0.00 0.00 0.00 3.95
7 8 2.452114 CTCCCTCTCCCACACCCT 59.548 66.667 0.00 0.00 0.00 4.34
8 9 2.689034 CCTCCCTCTCCCACACCC 60.689 72.222 0.00 0.00 0.00 4.61
9 10 2.689034 CCCTCCCTCTCCCACACC 60.689 72.222 0.00 0.00 0.00 4.16
10 11 3.403558 GCCCTCCCTCTCCCACAC 61.404 72.222 0.00 0.00 0.00 3.82
30 31 4.840005 CTTCTCCCGCTTCCGCCC 62.840 72.222 0.00 0.00 0.00 6.13
42 43 3.724914 CTTCCCGAGGCCGCTTCTC 62.725 68.421 4.53 0.00 0.00 2.87
43 44 3.775654 CTTCCCGAGGCCGCTTCT 61.776 66.667 4.53 0.00 0.00 2.85
362 363 1.712018 CTAAACCCTAAAGCCGCCGC 61.712 60.000 0.00 0.00 0.00 6.53
363 364 0.108041 TCTAAACCCTAAAGCCGCCG 60.108 55.000 0.00 0.00 0.00 6.46
364 365 2.118313 TTCTAAACCCTAAAGCCGCC 57.882 50.000 0.00 0.00 0.00 6.13
365 366 2.287103 CGATTCTAAACCCTAAAGCCGC 59.713 50.000 0.00 0.00 0.00 6.53
366 367 3.308866 CACGATTCTAAACCCTAAAGCCG 59.691 47.826 0.00 0.00 0.00 5.52
367 368 3.064958 GCACGATTCTAAACCCTAAAGCC 59.935 47.826 0.00 0.00 0.00 4.35
368 369 3.939592 AGCACGATTCTAAACCCTAAAGC 59.060 43.478 0.00 0.00 0.00 3.51
369 370 4.201822 GCAGCACGATTCTAAACCCTAAAG 60.202 45.833 0.00 0.00 0.00 1.85
370 371 3.687698 GCAGCACGATTCTAAACCCTAAA 59.312 43.478 0.00 0.00 0.00 1.85
371 372 3.267483 GCAGCACGATTCTAAACCCTAA 58.733 45.455 0.00 0.00 0.00 2.69
372 373 2.901249 GCAGCACGATTCTAAACCCTA 58.099 47.619 0.00 0.00 0.00 3.53
373 374 1.739067 GCAGCACGATTCTAAACCCT 58.261 50.000 0.00 0.00 0.00 4.34
385 386 3.505836 ACATGATATCTATCGCAGCACG 58.494 45.455 0.00 0.00 45.62 5.34
386 387 5.884771 TCTACATGATATCTATCGCAGCAC 58.115 41.667 0.00 0.00 35.48 4.40
387 388 6.405176 CCTTCTACATGATATCTATCGCAGCA 60.405 42.308 0.00 0.00 35.48 4.41
388 389 5.976534 CCTTCTACATGATATCTATCGCAGC 59.023 44.000 0.00 0.00 35.48 5.25
389 390 7.148171 TGTCCTTCTACATGATATCTATCGCAG 60.148 40.741 0.00 0.00 35.48 5.18
390 391 6.659242 TGTCCTTCTACATGATATCTATCGCA 59.341 38.462 0.00 0.00 35.48 5.10
391 392 6.970043 GTGTCCTTCTACATGATATCTATCGC 59.030 42.308 0.00 0.00 35.48 4.58
392 393 7.148390 ACGTGTCCTTCTACATGATATCTATCG 60.148 40.741 0.00 0.00 38.42 2.92
393 394 8.046294 ACGTGTCCTTCTACATGATATCTATC 57.954 38.462 0.00 0.00 38.42 2.08
394 395 8.410673 AACGTGTCCTTCTACATGATATCTAT 57.589 34.615 0.00 0.00 38.42 1.98
395 396 7.818997 AACGTGTCCTTCTACATGATATCTA 57.181 36.000 0.00 0.00 38.42 1.98
396 397 6.716934 AACGTGTCCTTCTACATGATATCT 57.283 37.500 0.00 0.00 38.42 1.98
397 398 7.542477 CCATAACGTGTCCTTCTACATGATATC 59.458 40.741 0.00 0.00 38.42 1.63
398 399 7.378966 CCATAACGTGTCCTTCTACATGATAT 58.621 38.462 0.00 0.00 38.42 1.63
399 400 6.239204 CCCATAACGTGTCCTTCTACATGATA 60.239 42.308 0.00 0.00 38.42 2.15
400 401 5.453339 CCCATAACGTGTCCTTCTACATGAT 60.453 44.000 0.00 0.00 38.42 2.45
401 402 4.142026 CCCATAACGTGTCCTTCTACATGA 60.142 45.833 0.00 0.00 38.42 3.07
402 403 4.119862 CCCATAACGTGTCCTTCTACATG 58.880 47.826 0.00 0.00 41.29 3.21
403 404 3.431766 GCCCATAACGTGTCCTTCTACAT 60.432 47.826 0.00 0.00 0.00 2.29
404 405 2.093869 GCCCATAACGTGTCCTTCTACA 60.094 50.000 0.00 0.00 0.00 2.74
405 406 2.167900 AGCCCATAACGTGTCCTTCTAC 59.832 50.000 0.00 0.00 0.00 2.59
406 407 2.167693 CAGCCCATAACGTGTCCTTCTA 59.832 50.000 0.00 0.00 0.00 2.10
407 408 1.066143 CAGCCCATAACGTGTCCTTCT 60.066 52.381 0.00 0.00 0.00 2.85
408 409 1.338769 ACAGCCCATAACGTGTCCTTC 60.339 52.381 0.00 0.00 0.00 3.46
409 410 0.690762 ACAGCCCATAACGTGTCCTT 59.309 50.000 0.00 0.00 0.00 3.36
410 411 0.036388 CACAGCCCATAACGTGTCCT 60.036 55.000 0.00 0.00 0.00 3.85
411 412 1.644786 GCACAGCCCATAACGTGTCC 61.645 60.000 0.00 0.00 0.00 4.02
412 413 0.953471 TGCACAGCCCATAACGTGTC 60.953 55.000 0.00 0.00 0.00 3.67
413 414 0.536233 TTGCACAGCCCATAACGTGT 60.536 50.000 0.00 0.00 0.00 4.49
414 415 0.810648 ATTGCACAGCCCATAACGTG 59.189 50.000 0.00 0.00 0.00 4.49
415 416 1.094785 GATTGCACAGCCCATAACGT 58.905 50.000 0.00 0.00 0.00 3.99
416 417 1.331756 GAGATTGCACAGCCCATAACG 59.668 52.381 0.00 0.00 0.00 3.18
417 418 1.331756 CGAGATTGCACAGCCCATAAC 59.668 52.381 0.00 0.00 0.00 1.89
418 419 1.209261 TCGAGATTGCACAGCCCATAA 59.791 47.619 0.00 0.00 0.00 1.90
419 420 0.829990 TCGAGATTGCACAGCCCATA 59.170 50.000 0.00 0.00 0.00 2.74
420 421 0.182061 ATCGAGATTGCACAGCCCAT 59.818 50.000 0.00 0.00 0.00 4.00
421 422 0.745486 CATCGAGATTGCACAGCCCA 60.745 55.000 0.00 0.00 0.00 5.36
422 423 0.745845 ACATCGAGATTGCACAGCCC 60.746 55.000 0.00 0.00 0.00 5.19
423 424 1.939974 TACATCGAGATTGCACAGCC 58.060 50.000 0.00 0.00 0.00 4.85
424 425 3.557185 TCAATACATCGAGATTGCACAGC 59.443 43.478 10.94 0.00 33.82 4.40
425 426 5.913637 GATCAATACATCGAGATTGCACAG 58.086 41.667 10.94 0.00 33.82 3.66
426 427 5.912360 GATCAATACATCGAGATTGCACA 57.088 39.130 10.94 0.00 33.82 4.57
436 437 1.526887 GGTGCACCGATCAATACATCG 59.473 52.381 22.49 0.00 44.45 3.84
437 438 2.545526 CTGGTGCACCGATCAATACATC 59.454 50.000 30.07 2.63 39.43 3.06
438 439 2.564771 CTGGTGCACCGATCAATACAT 58.435 47.619 30.07 0.00 39.43 2.29
439 440 1.406751 CCTGGTGCACCGATCAATACA 60.407 52.381 30.07 8.97 39.43 2.29
440 441 1.299541 CCTGGTGCACCGATCAATAC 58.700 55.000 30.07 4.16 39.43 1.89
441 442 0.463654 GCCTGGTGCACCGATCAATA 60.464 55.000 30.07 10.51 40.77 1.90
442 443 1.750399 GCCTGGTGCACCGATCAAT 60.750 57.895 30.07 0.00 40.77 2.57
443 444 2.359850 GCCTGGTGCACCGATCAA 60.360 61.111 30.07 12.05 40.77 2.57
452 453 4.817517 ACTTATATATACGTGCCTGGTGC 58.182 43.478 0.00 0.00 41.77 5.01
453 454 6.916440 TGTACTTATATATACGTGCCTGGTG 58.084 40.000 11.18 0.00 0.00 4.17
454 455 6.944290 TCTGTACTTATATATACGTGCCTGGT 59.056 38.462 11.18 0.00 0.00 4.00
455 456 7.387119 TCTGTACTTATATATACGTGCCTGG 57.613 40.000 11.18 0.00 0.00 4.45
456 457 8.459635 ACATCTGTACTTATATATACGTGCCTG 58.540 37.037 11.18 9.67 0.00 4.85
457 458 8.459635 CACATCTGTACTTATATATACGTGCCT 58.540 37.037 11.18 0.00 0.00 4.75
458 459 7.701078 CCACATCTGTACTTATATATACGTGCC 59.299 40.741 11.18 3.91 0.00 5.01
459 460 7.701078 CCCACATCTGTACTTATATATACGTGC 59.299 40.741 11.18 10.35 0.00 5.34
460 461 8.737175 ACCCACATCTGTACTTATATATACGTG 58.263 37.037 11.18 0.06 0.00 4.49
461 462 8.874744 ACCCACATCTGTACTTATATATACGT 57.125 34.615 7.04 7.04 0.00 3.57
462 463 8.953313 TGACCCACATCTGTACTTATATATACG 58.047 37.037 0.00 0.00 0.00 3.06
464 465 9.816787 TGTGACCCACATCTGTACTTATATATA 57.183 33.333 0.00 0.00 39.62 0.86
465 466 8.721133 TGTGACCCACATCTGTACTTATATAT 57.279 34.615 0.00 0.00 39.62 0.86
466 467 8.418662 GTTGTGACCCACATCTGTACTTATATA 58.581 37.037 0.27 0.00 44.16 0.86
467 468 7.272978 GTTGTGACCCACATCTGTACTTATAT 58.727 38.462 0.27 0.00 44.16 0.86
468 469 6.351541 GGTTGTGACCCACATCTGTACTTATA 60.352 42.308 0.27 0.00 44.16 0.98
469 470 5.488341 GTTGTGACCCACATCTGTACTTAT 58.512 41.667 0.27 0.00 44.16 1.73
470 471 4.262721 GGTTGTGACCCACATCTGTACTTA 60.263 45.833 0.27 0.00 44.16 2.24
471 472 3.496160 GGTTGTGACCCACATCTGTACTT 60.496 47.826 0.27 0.00 44.16 2.24
472 473 2.038557 GGTTGTGACCCACATCTGTACT 59.961 50.000 0.27 0.00 44.16 2.73
473 474 2.423577 GGTTGTGACCCACATCTGTAC 58.576 52.381 0.27 0.00 44.16 2.90
474 475 2.851263 GGTTGTGACCCACATCTGTA 57.149 50.000 0.27 0.00 44.16 2.74
475 476 3.725754 GGTTGTGACCCACATCTGT 57.274 52.632 0.27 0.00 44.16 3.41
484 485 8.611654 TTTCTTGTATAGTTAAGGTTGTGACC 57.388 34.615 0.00 0.00 46.92 4.02
485 486 9.874215 GTTTTCTTGTATAGTTAAGGTTGTGAC 57.126 33.333 0.00 0.00 0.00 3.67
486 487 9.616156 TGTTTTCTTGTATAGTTAAGGTTGTGA 57.384 29.630 0.00 0.00 0.00 3.58
487 488 9.878599 CTGTTTTCTTGTATAGTTAAGGTTGTG 57.121 33.333 0.00 0.00 0.00 3.33
488 489 9.063615 CCTGTTTTCTTGTATAGTTAAGGTTGT 57.936 33.333 0.00 0.00 0.00 3.32
489 490 9.280174 TCCTGTTTTCTTGTATAGTTAAGGTTG 57.720 33.333 0.00 0.00 0.00 3.77
490 491 9.503399 CTCCTGTTTTCTTGTATAGTTAAGGTT 57.497 33.333 0.00 0.00 0.00 3.50
491 492 8.101419 CCTCCTGTTTTCTTGTATAGTTAAGGT 58.899 37.037 0.00 0.00 0.00 3.50
492 493 8.101419 ACCTCCTGTTTTCTTGTATAGTTAAGG 58.899 37.037 0.00 0.00 0.00 2.69
493 494 8.936864 CACCTCCTGTTTTCTTGTATAGTTAAG 58.063 37.037 0.00 0.00 0.00 1.85
494 495 7.881232 CCACCTCCTGTTTTCTTGTATAGTTAA 59.119 37.037 0.00 0.00 0.00 2.01
495 496 7.236019 TCCACCTCCTGTTTTCTTGTATAGTTA 59.764 37.037 0.00 0.00 0.00 2.24
496 497 6.043938 TCCACCTCCTGTTTTCTTGTATAGTT 59.956 38.462 0.00 0.00 0.00 2.24
497 498 5.546499 TCCACCTCCTGTTTTCTTGTATAGT 59.454 40.000 0.00 0.00 0.00 2.12
498 499 5.875359 GTCCACCTCCTGTTTTCTTGTATAG 59.125 44.000 0.00 0.00 0.00 1.31
499 500 5.280317 GGTCCACCTCCTGTTTTCTTGTATA 60.280 44.000 0.00 0.00 0.00 1.47
500 501 4.506802 GGTCCACCTCCTGTTTTCTTGTAT 60.507 45.833 0.00 0.00 0.00 2.29
501 502 3.181448 GGTCCACCTCCTGTTTTCTTGTA 60.181 47.826 0.00 0.00 0.00 2.41
502 503 2.422945 GGTCCACCTCCTGTTTTCTTGT 60.423 50.000 0.00 0.00 0.00 3.16
503 504 2.230660 GGTCCACCTCCTGTTTTCTTG 58.769 52.381 0.00 0.00 0.00 3.02
504 505 1.145119 GGGTCCACCTCCTGTTTTCTT 59.855 52.381 0.00 0.00 35.85 2.52
505 506 0.771755 GGGTCCACCTCCTGTTTTCT 59.228 55.000 0.00 0.00 35.85 2.52
506 507 3.341263 GGGTCCACCTCCTGTTTTC 57.659 57.895 0.00 0.00 35.85 2.29
516 517 2.579410 ATTTGTGTGTAGGGTCCACC 57.421 50.000 0.00 0.00 40.67 4.61
517 518 5.583457 GTGTATATTTGTGTGTAGGGTCCAC 59.417 44.000 0.00 0.00 0.00 4.02
518 519 5.624967 CGTGTATATTTGTGTGTAGGGTCCA 60.625 44.000 0.00 0.00 0.00 4.02
519 520 4.807304 CGTGTATATTTGTGTGTAGGGTCC 59.193 45.833 0.00 0.00 0.00 4.46
520 521 5.413499 ACGTGTATATTTGTGTGTAGGGTC 58.587 41.667 0.00 0.00 0.00 4.46
521 522 5.410355 ACGTGTATATTTGTGTGTAGGGT 57.590 39.130 0.00 0.00 0.00 4.34
522 523 6.254157 GTGTACGTGTATATTTGTGTGTAGGG 59.746 42.308 0.00 0.00 0.00 3.53
523 524 6.807720 TGTGTACGTGTATATTTGTGTGTAGG 59.192 38.462 0.00 0.00 0.00 3.18
524 525 7.800015 TGTGTACGTGTATATTTGTGTGTAG 57.200 36.000 0.00 0.00 0.00 2.74
525 526 8.760103 ATTGTGTACGTGTATATTTGTGTGTA 57.240 30.769 0.00 0.00 0.00 2.90
526 527 7.661127 ATTGTGTACGTGTATATTTGTGTGT 57.339 32.000 0.00 0.00 0.00 3.72
536 537 9.811995 ATTGTTGAGTATATTGTGTACGTGTAT 57.188 29.630 0.00 0.00 0.00 2.29
537 538 9.292846 GATTGTTGAGTATATTGTGTACGTGTA 57.707 33.333 0.00 0.00 0.00 2.90
538 539 7.008901 CGATTGTTGAGTATATTGTGTACGTGT 59.991 37.037 0.00 0.00 0.00 4.49
539 540 7.327378 CGATTGTTGAGTATATTGTGTACGTG 58.673 38.462 0.00 0.00 0.00 4.49
540 541 6.020121 GCGATTGTTGAGTATATTGTGTACGT 60.020 38.462 0.00 0.00 0.00 3.57
541 542 6.020201 TGCGATTGTTGAGTATATTGTGTACG 60.020 38.462 0.00 0.00 0.00 3.67
542 543 7.222031 TCTGCGATTGTTGAGTATATTGTGTAC 59.778 37.037 0.00 0.00 0.00 2.90
543 544 7.262048 TCTGCGATTGTTGAGTATATTGTGTA 58.738 34.615 0.00 0.00 0.00 2.90
544 545 6.106003 TCTGCGATTGTTGAGTATATTGTGT 58.894 36.000 0.00 0.00 0.00 3.72
545 546 6.476706 TCTCTGCGATTGTTGAGTATATTGTG 59.523 38.462 0.00 0.00 0.00 3.33
546 547 6.573434 TCTCTGCGATTGTTGAGTATATTGT 58.427 36.000 0.00 0.00 0.00 2.71
547 548 7.436376 TCTTCTCTGCGATTGTTGAGTATATTG 59.564 37.037 0.00 0.00 0.00 1.90
548 549 7.436673 GTCTTCTCTGCGATTGTTGAGTATATT 59.563 37.037 0.00 0.00 0.00 1.28
549 550 6.920758 GTCTTCTCTGCGATTGTTGAGTATAT 59.079 38.462 0.00 0.00 0.00 0.86
550 551 6.095580 AGTCTTCTCTGCGATTGTTGAGTATA 59.904 38.462 0.00 0.00 0.00 1.47
551 552 5.105554 AGTCTTCTCTGCGATTGTTGAGTAT 60.106 40.000 0.00 0.00 0.00 2.12
552 553 4.218635 AGTCTTCTCTGCGATTGTTGAGTA 59.781 41.667 0.00 0.00 0.00 2.59
553 554 3.006323 AGTCTTCTCTGCGATTGTTGAGT 59.994 43.478 0.00 0.00 0.00 3.41
554 555 3.583806 AGTCTTCTCTGCGATTGTTGAG 58.416 45.455 0.00 0.00 0.00 3.02
555 556 3.667497 AGTCTTCTCTGCGATTGTTGA 57.333 42.857 0.00 0.00 0.00 3.18
556 557 4.738124 TCTAGTCTTCTCTGCGATTGTTG 58.262 43.478 0.00 0.00 0.00 3.33
557 558 5.392767 TTCTAGTCTTCTCTGCGATTGTT 57.607 39.130 0.00 0.00 0.00 2.83
558 559 5.590530 ATTCTAGTCTTCTCTGCGATTGT 57.409 39.130 0.00 0.00 0.00 2.71
559 560 7.993821 TTTATTCTAGTCTTCTCTGCGATTG 57.006 36.000 0.00 0.00 0.00 2.67
560 561 7.870445 GGATTTATTCTAGTCTTCTCTGCGATT 59.130 37.037 0.00 0.00 0.00 3.34
561 562 7.014711 TGGATTTATTCTAGTCTTCTCTGCGAT 59.985 37.037 0.00 0.00 0.00 4.58
562 563 6.321435 TGGATTTATTCTAGTCTTCTCTGCGA 59.679 38.462 0.00 0.00 0.00 5.10
563 564 6.507900 TGGATTTATTCTAGTCTTCTCTGCG 58.492 40.000 0.00 0.00 0.00 5.18
564 565 7.721402 TCTGGATTTATTCTAGTCTTCTCTGC 58.279 38.462 0.00 0.00 34.67 4.26
569 570 9.943163 GCATTTTCTGGATTTATTCTAGTCTTC 57.057 33.333 0.00 0.00 34.67 2.87
570 571 9.466497 TGCATTTTCTGGATTTATTCTAGTCTT 57.534 29.630 0.00 0.00 34.67 3.01
571 572 9.466497 TTGCATTTTCTGGATTTATTCTAGTCT 57.534 29.630 0.00 0.00 34.67 3.24
578 579 9.603921 CCAGTATTTGCATTTTCTGGATTTATT 57.396 29.630 17.75 0.00 43.28 1.40
579 580 8.761689 ACCAGTATTTGCATTTTCTGGATTTAT 58.238 29.630 24.83 8.31 43.28 1.40
580 581 8.034215 CACCAGTATTTGCATTTTCTGGATTTA 58.966 33.333 24.83 0.00 43.28 1.40
581 582 6.875195 CACCAGTATTTGCATTTTCTGGATTT 59.125 34.615 24.83 8.83 43.28 2.17
582 583 6.400568 CACCAGTATTTGCATTTTCTGGATT 58.599 36.000 24.83 9.35 43.28 3.01
583 584 5.625197 GCACCAGTATTTGCATTTTCTGGAT 60.625 40.000 24.83 12.80 43.28 3.41
584 585 4.321899 GCACCAGTATTTGCATTTTCTGGA 60.322 41.667 24.83 0.00 43.28 3.86
585 586 3.928375 GCACCAGTATTTGCATTTTCTGG 59.072 43.478 19.71 19.71 45.24 3.86
586 587 3.928375 GGCACCAGTATTTGCATTTTCTG 59.072 43.478 0.00 0.00 40.75 3.02
587 588 3.577848 TGGCACCAGTATTTGCATTTTCT 59.422 39.130 0.00 0.00 40.75 2.52
588 589 3.924144 TGGCACCAGTATTTGCATTTTC 58.076 40.909 0.00 0.00 40.75 2.29
589 590 4.348863 TTGGCACCAGTATTTGCATTTT 57.651 36.364 0.00 0.00 40.75 1.82
590 591 4.348863 TTTGGCACCAGTATTTGCATTT 57.651 36.364 0.00 0.00 40.75 2.32
591 592 4.348863 TTTTGGCACCAGTATTTGCATT 57.651 36.364 0.00 0.00 40.75 3.56
592 593 4.556592 ATTTTGGCACCAGTATTTGCAT 57.443 36.364 0.00 0.00 40.75 3.96
593 594 4.348863 AATTTTGGCACCAGTATTTGCA 57.651 36.364 0.00 0.00 40.75 4.08
594 595 5.351189 CCTAAATTTTGGCACCAGTATTTGC 59.649 40.000 5.72 0.00 38.06 3.68
595 596 6.589907 GTCCTAAATTTTGGCACCAGTATTTG 59.410 38.462 13.17 9.21 0.00 2.32
596 597 6.496911 AGTCCTAAATTTTGGCACCAGTATTT 59.503 34.615 13.17 12.70 0.00 1.40
597 598 6.016555 AGTCCTAAATTTTGGCACCAGTATT 58.983 36.000 13.17 0.00 0.00 1.89
598 599 5.580022 AGTCCTAAATTTTGGCACCAGTAT 58.420 37.500 13.17 0.00 0.00 2.12
599 600 4.993028 AGTCCTAAATTTTGGCACCAGTA 58.007 39.130 13.17 0.00 0.00 2.74
600 601 3.844640 AGTCCTAAATTTTGGCACCAGT 58.155 40.909 13.17 0.00 0.00 4.00
601 602 4.280677 TCAAGTCCTAAATTTTGGCACCAG 59.719 41.667 13.17 8.25 0.00 4.00
602 603 4.219115 TCAAGTCCTAAATTTTGGCACCA 58.781 39.130 13.17 0.00 0.00 4.17
603 604 4.864704 TCAAGTCCTAAATTTTGGCACC 57.135 40.909 13.17 4.69 0.00 5.01
604 605 5.869344 GGATTCAAGTCCTAAATTTTGGCAC 59.131 40.000 13.17 11.77 35.32 5.01
605 606 5.779771 AGGATTCAAGTCCTAAATTTTGGCA 59.220 36.000 13.17 1.13 46.70 4.92
606 607 6.101997 CAGGATTCAAGTCCTAAATTTTGGC 58.898 40.000 13.17 8.85 46.85 4.52
607 608 6.211384 ACCAGGATTCAAGTCCTAAATTTTGG 59.789 38.462 11.94 11.94 46.85 3.28
608 609 7.232118 ACCAGGATTCAAGTCCTAAATTTTG 57.768 36.000 0.00 0.00 46.85 2.44
609 610 8.390921 TCTACCAGGATTCAAGTCCTAAATTTT 58.609 33.333 0.00 0.00 46.85 1.82
610 611 7.829706 GTCTACCAGGATTCAAGTCCTAAATTT 59.170 37.037 0.00 0.00 46.85 1.82
611 612 7.182930 AGTCTACCAGGATTCAAGTCCTAAATT 59.817 37.037 0.00 0.00 46.85 1.82
612 613 6.674419 AGTCTACCAGGATTCAAGTCCTAAAT 59.326 38.462 0.00 0.00 46.85 1.40
613 614 6.023603 AGTCTACCAGGATTCAAGTCCTAAA 58.976 40.000 0.00 0.00 46.85 1.85
614 615 5.590818 AGTCTACCAGGATTCAAGTCCTAA 58.409 41.667 0.00 0.00 46.85 2.69
615 616 5.202004 GAGTCTACCAGGATTCAAGTCCTA 58.798 45.833 0.00 0.00 46.85 2.94
617 618 3.769844 TGAGTCTACCAGGATTCAAGTCC 59.230 47.826 0.00 0.00 38.62 3.85
618 619 4.382147 GGTGAGTCTACCAGGATTCAAGTC 60.382 50.000 0.00 0.00 40.54 3.01
619 620 3.515901 GGTGAGTCTACCAGGATTCAAGT 59.484 47.826 0.00 0.00 40.54 3.16
620 621 3.515502 TGGTGAGTCTACCAGGATTCAAG 59.484 47.826 9.55 0.00 45.46 3.02
621 622 3.516586 TGGTGAGTCTACCAGGATTCAA 58.483 45.455 9.55 0.00 45.46 2.69
622 623 3.184382 TGGTGAGTCTACCAGGATTCA 57.816 47.619 9.55 0.00 45.46 2.57
669 670 6.691508 TGATGATACAGCGAACTAAGCATAT 58.308 36.000 0.00 0.00 37.01 1.78
670 671 6.084326 TGATGATACAGCGAACTAAGCATA 57.916 37.500 0.00 0.00 37.01 3.14
671 672 4.948847 TGATGATACAGCGAACTAAGCAT 58.051 39.130 0.00 0.00 37.01 3.79
672 673 4.385358 TGATGATACAGCGAACTAAGCA 57.615 40.909 0.00 0.00 37.01 3.91
673 674 5.043903 TCTTGATGATACAGCGAACTAAGC 58.956 41.667 0.00 0.00 0.00 3.09
674 675 7.706281 AATCTTGATGATACAGCGAACTAAG 57.294 36.000 0.00 0.00 34.45 2.18
675 676 8.414003 ACTAATCTTGATGATACAGCGAACTAA 58.586 33.333 0.00 0.00 34.45 2.24
676 677 7.941919 ACTAATCTTGATGATACAGCGAACTA 58.058 34.615 0.00 0.00 34.45 2.24
681 682 7.274468 GTGGATACTAATCTTGATGATACAGCG 59.726 40.741 0.00 0.00 33.73 5.18
686 687 7.090808 GTGCGTGGATACTAATCTTGATGATA 58.909 38.462 0.00 0.00 33.73 2.15
691 692 3.702330 CGTGCGTGGATACTAATCTTGA 58.298 45.455 0.00 0.00 37.61 3.02
701 702 0.179121 ATTCTTCGCGTGCGTGGATA 60.179 50.000 14.47 5.66 40.74 2.59
708 709 1.002366 AGTGATGATTCTTCGCGTGC 58.998 50.000 5.77 0.00 0.00 5.34
712 713 5.234543 GGTAGGTAAAGTGATGATTCTTCGC 59.765 44.000 5.25 5.25 0.00 4.70
752 761 7.549488 GGGAATAAAGAGAAGAAAACAGATCGA 59.451 37.037 0.00 0.00 0.00 3.59
782 793 2.351706 AACCTTTGCTTGTCGGGTAA 57.648 45.000 0.00 0.00 0.00 2.85
785 796 2.817258 TGAATAACCTTTGCTTGTCGGG 59.183 45.455 0.00 0.00 0.00 5.14
835 846 0.665972 GCATAGAGCGAGGTAGCAGC 60.666 60.000 4.53 4.53 40.15 5.25
888 916 0.902531 TTGGCTACTAGTGTGAGGCC 59.097 55.000 13.46 13.96 37.78 5.19
918 946 5.598417 AGAAGGCTGAAAGTTGGTTTAATGT 59.402 36.000 0.00 0.00 35.30 2.71
934 962 6.148948 CGAGAACTATCTATGAAGAAGGCTG 58.851 44.000 0.00 0.00 35.54 4.85
946 974 6.073167 CGGAAGAGTAATGCGAGAACTATCTA 60.073 42.308 0.00 0.00 35.54 1.98
966 998 0.755079 TCCTGATGCTGGATCGGAAG 59.245 55.000 18.30 4.07 39.59 3.46
986 1018 3.276857 ACTTGCATCTATCAGTGGCTTG 58.723 45.455 0.00 0.00 0.00 4.01
990 1022 4.445453 TGCTAACTTGCATCTATCAGTGG 58.555 43.478 0.00 0.00 38.12 4.00
1012 1044 2.540515 CGTCGACATTAGACCTGCAAT 58.459 47.619 17.16 0.00 35.33 3.56
1017 1049 1.891150 ACAACCGTCGACATTAGACCT 59.109 47.619 17.16 0.00 35.33 3.85
1046 1081 3.223435 CGACTCATAGTCATAGGGGTGT 58.777 50.000 7.75 0.00 45.30 4.16
1053 1088 1.535896 GGCGAGCGACTCATAGTCATA 59.464 52.381 7.75 0.00 45.30 2.15
1054 1089 0.312416 GGCGAGCGACTCATAGTCAT 59.688 55.000 7.75 0.00 45.30 3.06
1055 1090 1.725557 GGGCGAGCGACTCATAGTCA 61.726 60.000 7.75 0.00 45.30 3.41
1056 1091 1.008309 GGGCGAGCGACTCATAGTC 60.008 63.158 0.00 0.00 41.71 2.59
1057 1092 2.835705 CGGGCGAGCGACTCATAGT 61.836 63.158 0.00 0.00 0.00 2.12
1058 1093 2.050895 CGGGCGAGCGACTCATAG 60.051 66.667 0.00 0.00 0.00 2.23
1136 1171 1.797713 CGGCGAGAGAATTAGCGAACA 60.798 52.381 0.00 0.00 0.00 3.18
1141 1176 1.855360 CTTGACGGCGAGAGAATTAGC 59.145 52.381 16.62 0.00 0.00 3.09
1244 1279 2.228822 GGATGAATGTGGAGTGCGTTTT 59.771 45.455 0.00 0.00 0.00 2.43
1246 1281 1.003580 AGGATGAATGTGGAGTGCGTT 59.996 47.619 0.00 0.00 0.00 4.84
1251 1286 3.285484 GCATGAAGGATGAATGTGGAGT 58.715 45.455 0.00 0.00 33.31 3.85
1283 1318 3.777106 TTCAACAGCTGTGAAGGAGAT 57.223 42.857 22.49 0.00 0.00 2.75
1288 1326 5.008415 ACTTCAGATTTCAACAGCTGTGAAG 59.992 40.000 25.77 25.77 43.38 3.02
1293 1331 4.514441 ACAGACTTCAGATTTCAACAGCTG 59.486 41.667 13.48 13.48 0.00 4.24
1311 1349 1.128507 CACACACACACACACACAGAC 59.871 52.381 0.00 0.00 0.00 3.51
1315 1353 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1316 1354 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1317 1355 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1318 1356 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1319 1357 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1320 1358 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1321 1359 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1322 1360 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1323 1361 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1453 1499 1.352404 CGGTGATCTCGAGGTCGTC 59.648 63.158 20.39 15.13 40.80 4.20
1587 1633 2.673368 GTCCTCGCTGTTGTATTCCTTG 59.327 50.000 0.00 0.00 0.00 3.61
1753 1799 3.527427 GGCGCCATTACCTTGGGC 61.527 66.667 24.80 0.00 44.27 5.36
1754 1800 1.823899 GAGGCGCCATTACCTTGGG 60.824 63.158 31.54 0.00 36.05 4.12
1755 1801 1.077787 TGAGGCGCCATTACCTTGG 60.078 57.895 31.54 0.00 36.05 3.61
1806 1855 2.341846 AGGGAAAAACGCACTGAAGA 57.658 45.000 0.00 0.00 0.00 2.87
1882 1942 1.086067 AACGAGCGATGCATCACTGG 61.086 55.000 25.70 23.14 0.00 4.00
1883 1943 0.025898 CAACGAGCGATGCATCACTG 59.974 55.000 25.70 17.00 0.00 3.66
1893 2127 2.964925 GCACACCACAACGAGCGA 60.965 61.111 0.00 0.00 0.00 4.93
1925 2159 7.517259 GCTCAATTTTGAACAAACAATCTCCAC 60.517 37.037 0.00 0.00 36.64 4.02
1961 2195 9.886132 AACGGACTATATTAATTTCTGAAGTGT 57.114 29.630 0.00 0.00 0.00 3.55
2125 2364 0.323725 TCATGCCCTTGAAGGAAGCC 60.324 55.000 13.97 0.00 37.67 4.35
2159 2400 4.612264 AAACTTCTTAGCGTCTTGGGTA 57.388 40.909 0.00 0.00 0.00 3.69
2190 2433 4.568152 AGTGCATCAACTTAGCGTTTTT 57.432 36.364 0.00 0.00 32.27 1.94
2191 2434 4.290155 CAAGTGCATCAACTTAGCGTTTT 58.710 39.130 0.00 0.00 38.34 2.43
2192 2435 3.853307 GCAAGTGCATCAACTTAGCGTTT 60.853 43.478 0.00 0.00 38.34 3.60
2193 2436 2.350772 GCAAGTGCATCAACTTAGCGTT 60.351 45.455 0.00 0.00 38.34 4.84
2194 2437 1.197721 GCAAGTGCATCAACTTAGCGT 59.802 47.619 0.00 0.00 38.34 5.07
2195 2438 1.466167 AGCAAGTGCATCAACTTAGCG 59.534 47.619 6.00 0.00 45.16 4.26
2196 2439 2.159462 GGAGCAAGTGCATCAACTTAGC 60.159 50.000 6.00 0.00 45.16 3.09
2197 2440 3.341823 AGGAGCAAGTGCATCAACTTAG 58.658 45.455 6.00 0.00 45.16 2.18
2198 2441 3.423539 AGGAGCAAGTGCATCAACTTA 57.576 42.857 6.00 0.00 45.16 2.24
2199 2442 2.283145 AGGAGCAAGTGCATCAACTT 57.717 45.000 6.00 0.00 45.16 2.66
2200 2443 1.884579 CAAGGAGCAAGTGCATCAACT 59.115 47.619 6.00 0.00 45.16 3.16
2201 2444 1.610522 ACAAGGAGCAAGTGCATCAAC 59.389 47.619 6.00 0.00 45.16 3.18
2202 2445 1.610038 CACAAGGAGCAAGTGCATCAA 59.390 47.619 6.00 0.00 45.16 2.57
2203 2446 1.241165 CACAAGGAGCAAGTGCATCA 58.759 50.000 6.00 0.00 45.16 3.07
2204 2447 1.242076 ACACAAGGAGCAAGTGCATC 58.758 50.000 6.00 0.60 45.16 3.91
2205 2448 1.338973 CAACACAAGGAGCAAGTGCAT 59.661 47.619 6.00 0.00 45.16 3.96
2206 2449 0.740149 CAACACAAGGAGCAAGTGCA 59.260 50.000 6.00 0.00 45.16 4.57
2207 2450 0.740737 ACAACACAAGGAGCAAGTGC 59.259 50.000 0.00 0.00 42.49 4.40
2208 2451 1.745087 ACACAACACAAGGAGCAAGTG 59.255 47.619 0.00 0.00 39.12 3.16
2209 2452 1.745087 CACACAACACAAGGAGCAAGT 59.255 47.619 0.00 0.00 0.00 3.16
2210 2453 2.016318 TCACACAACACAAGGAGCAAG 58.984 47.619 0.00 0.00 0.00 4.01
2211 2454 2.121291 TCACACAACACAAGGAGCAA 57.879 45.000 0.00 0.00 0.00 3.91
2217 2460 4.701361 CACACGATATCACACAACACAAG 58.299 43.478 3.12 0.00 0.00 3.16
2223 2466 2.073117 ACGCACACGATATCACACAA 57.927 45.000 3.12 0.00 43.93 3.33
2230 2473 6.072119 TCCAAGATCTTATACGCACACGATAT 60.072 38.462 7.86 0.00 43.93 1.63
2245 2488 5.902613 TGCGAATTTCAATCCAAGATCTT 57.097 34.783 0.88 0.88 0.00 2.40
2288 2532 6.001460 GCTACTTAATGTATGGCCATTGGTA 58.999 40.000 26.37 14.19 35.85 3.25
2340 2585 6.128200 GGGACTTGGATGCATTTTTCAATTTC 60.128 38.462 0.00 4.12 0.00 2.17
2421 2669 1.153086 GGTCAGAGGCGGCATCAAT 60.153 57.895 17.58 0.00 0.00 2.57
2423 2671 3.785859 GGGTCAGAGGCGGCATCA 61.786 66.667 17.58 0.00 0.00 3.07
2428 2676 2.765807 ATGGAGGGTCAGAGGCGG 60.766 66.667 0.00 0.00 0.00 6.13
2438 2686 3.543680 TTTCTTCGCTAAGATGGAGGG 57.456 47.619 0.96 0.00 41.36 4.30
2464 2712 7.749126 CCGATTTTACAAACTCCTATGTTTCAC 59.251 37.037 0.00 0.00 37.98 3.18
2496 2744 2.026542 TGCTCTGCATCACTGAATTCCT 60.027 45.455 2.27 0.00 31.71 3.36
2501 2749 3.251729 GTCTTTTGCTCTGCATCACTGAA 59.748 43.478 0.00 0.00 38.76 3.02
2504 2752 1.802960 CGTCTTTTGCTCTGCATCACT 59.197 47.619 0.00 0.00 38.76 3.41
2518 2766 2.677003 CCGCAATGCCGACGTCTTT 61.677 57.895 14.70 0.00 0.00 2.52
2571 2819 0.556258 TCTCCAGGCCCTCTTCGATA 59.444 55.000 0.00 0.00 0.00 2.92
2576 2824 2.960688 GCGTTCTCCAGGCCCTCTT 61.961 63.158 0.00 0.00 0.00 2.85
2605 2853 1.674962 GCGTCCCTCGACTTAGTATGT 59.325 52.381 0.00 0.00 42.86 2.29
2618 2866 0.606401 CATGTGAGGTTTGCGTCCCT 60.606 55.000 0.00 0.00 0.00 4.20
2658 2906 0.391263 CGGTTCCTACCAGTGAAGGC 60.391 60.000 6.62 0.00 45.31 4.35
2701 2949 1.816835 GACCTACAGATGTGTCGTGGA 59.183 52.381 13.83 0.00 38.19 4.02
2709 2957 1.410517 CGATGGCAGACCTACAGATGT 59.589 52.381 0.00 0.00 36.63 3.06
2714 2962 1.103803 GTCTCGATGGCAGACCTACA 58.896 55.000 0.00 0.00 35.19 2.74
2715 2963 1.103803 TGTCTCGATGGCAGACCTAC 58.896 55.000 0.00 0.00 39.78 3.18
2750 3000 6.542370 CCTTCGTCTTGTTATATGGATTGGTT 59.458 38.462 0.00 0.00 0.00 3.67
2751 3001 6.055588 CCTTCGTCTTGTTATATGGATTGGT 58.944 40.000 0.00 0.00 0.00 3.67
2765 3015 1.523758 CCCTTTGTCCCTTCGTCTTG 58.476 55.000 0.00 0.00 0.00 3.02
2770 3020 1.675641 CTGGCCCTTTGTCCCTTCG 60.676 63.158 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.