Multiple sequence alignment - TraesCS5A01G206500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G206500 chr5A 100.000 2454 0 0 1 2454 417043661 417046114 0.000000e+00 4532.0
1 TraesCS5A01G206500 chr5B 87.507 1913 112 47 415 2253 373042670 373044529 0.000000e+00 2091.0
2 TraesCS5A01G206500 chr5B 97.561 123 3 0 2252 2374 373044626 373044748 6.880000e-51 211.0
3 TraesCS5A01G206500 chr5D 86.892 1892 148 46 420 2257 321899562 321901407 0.000000e+00 2028.0
4 TraesCS5A01G206500 chr5D 93.248 311 21 0 97 407 257238905 257239215 2.220000e-125 459.0
5 TraesCS5A01G206500 chr3B 82.796 930 79 40 415 1322 585728120 585728990 0.000000e+00 756.0
6 TraesCS5A01G206500 chr3B 89.024 574 48 8 1680 2240 585729018 585729589 0.000000e+00 697.0
7 TraesCS5A01G206500 chr4A 85.147 579 37 16 1124 1679 374661865 374661313 4.610000e-152 547.0
8 TraesCS5A01G206500 chr4A 80.000 155 5 8 1666 1809 374661302 374661163 9.350000e-15 91.6
9 TraesCS5A01G206500 chr7A 85.458 557 38 15 1140 1679 3419746 3419216 7.720000e-150 540.0
10 TraesCS5A01G206500 chr7A 80.000 155 5 8 1666 1809 3419206 3419067 9.350000e-15 91.6
11 TraesCS5A01G206500 chr2D 94.212 311 18 0 99 409 76640744 76640434 2.210000e-130 475.0
12 TraesCS5A01G206500 chr2D 93.569 311 20 0 96 406 402238854 402238544 4.780000e-127 464.0
13 TraesCS5A01G206500 chr2D 95.556 45 2 0 2409 2453 542368835 542368879 3.380000e-09 73.1
14 TraesCS5A01G206500 chr7D 93.910 312 19 0 98 409 444356922 444357233 2.860000e-129 472.0
15 TraesCS5A01G206500 chr7D 93.248 311 21 0 98 408 36119991 36120301 2.220000e-125 459.0
16 TraesCS5A01G206500 chr2B 93.291 313 21 0 100 412 96383463 96383151 1.720000e-126 462.0
17 TraesCS5A01G206500 chr4D 93.269 312 21 0 98 409 304420304 304420615 6.180000e-126 460.0
18 TraesCS5A01G206500 chr1D 93.291 313 20 1 95 407 361354647 361354958 6.180000e-126 460.0
19 TraesCS5A01G206500 chr1D 92.971 313 22 0 100 412 481831039 481830727 8.000000e-125 457.0
20 TraesCS5A01G206500 chrUn 84.578 415 25 13 1280 1676 82536247 82536640 2.300000e-100 375.0
21 TraesCS5A01G206500 chrUn 81.731 104 1 7 1679 1779 82536666 82536754 1.220000e-08 71.3
22 TraesCS5A01G206500 chr6B 88.710 62 4 3 2394 2452 566796598 566796537 3.380000e-09 73.1
23 TraesCS5A01G206500 chr4B 91.304 46 4 0 2409 2454 80591023 80591068 2.040000e-06 63.9
24 TraesCS5A01G206500 chr4B 89.130 46 5 0 2409 2454 80563377 80563422 9.480000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G206500 chr5A 417043661 417046114 2453 False 4532.00 4532 100.0000 1 2454 1 chr5A.!!$F1 2453
1 TraesCS5A01G206500 chr5B 373042670 373044748 2078 False 1151.00 2091 92.5340 415 2374 2 chr5B.!!$F1 1959
2 TraesCS5A01G206500 chr5D 321899562 321901407 1845 False 2028.00 2028 86.8920 420 2257 1 chr5D.!!$F2 1837
3 TraesCS5A01G206500 chr3B 585728120 585729589 1469 False 726.50 756 85.9100 415 2240 2 chr3B.!!$F1 1825
4 TraesCS5A01G206500 chr4A 374661163 374661865 702 True 319.30 547 82.5735 1124 1809 2 chr4A.!!$R1 685
5 TraesCS5A01G206500 chr7A 3419067 3419746 679 True 315.80 540 82.7290 1140 1809 2 chr7A.!!$R1 669
6 TraesCS5A01G206500 chrUn 82536247 82536754 507 False 223.15 375 83.1545 1280 1779 2 chrUn.!!$F1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 109 0.03831 GGCAGAGTTAAGGCCCTGTT 59.962 55.0 0.0 0.0 41.9 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1537 1595 0.179045 AAGCTCGCACACAAGAAGGT 60.179 50.0 0.0 0.0 0.0 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.534729 GGCCTTCAACTTTCCATCGT 58.465 50.000 0.00 0.00 0.00 3.73
20 21 1.886542 GGCCTTCAACTTTCCATCGTT 59.113 47.619 0.00 0.00 0.00 3.85
21 22 3.078837 GGCCTTCAACTTTCCATCGTTA 58.921 45.455 0.00 0.00 0.00 3.18
22 23 3.694566 GGCCTTCAACTTTCCATCGTTAT 59.305 43.478 0.00 0.00 0.00 1.89
23 24 4.201920 GGCCTTCAACTTTCCATCGTTATC 60.202 45.833 0.00 0.00 0.00 1.75
24 25 4.394920 GCCTTCAACTTTCCATCGTTATCA 59.605 41.667 0.00 0.00 0.00 2.15
25 26 5.447818 GCCTTCAACTTTCCATCGTTATCAG 60.448 44.000 0.00 0.00 0.00 2.90
26 27 5.447818 CCTTCAACTTTCCATCGTTATCAGC 60.448 44.000 0.00 0.00 0.00 4.26
27 28 3.616821 TCAACTTTCCATCGTTATCAGCG 59.383 43.478 0.00 0.00 0.00 5.18
28 29 1.933853 ACTTTCCATCGTTATCAGCGC 59.066 47.619 0.00 0.00 0.00 5.92
29 30 1.933181 CTTTCCATCGTTATCAGCGCA 59.067 47.619 11.47 0.00 0.00 6.09
30 31 2.238942 TTCCATCGTTATCAGCGCAT 57.761 45.000 11.47 0.00 0.00 4.73
31 32 1.501169 TCCATCGTTATCAGCGCATG 58.499 50.000 11.47 5.22 0.00 4.06
32 33 1.068434 TCCATCGTTATCAGCGCATGA 59.932 47.619 11.47 11.25 43.70 3.07
40 41 3.601277 TCAGCGCATGATGATCCTC 57.399 52.632 11.47 0.00 35.14 3.71
41 42 0.319297 TCAGCGCATGATGATCCTCG 60.319 55.000 11.47 0.00 35.14 4.63
42 43 0.599466 CAGCGCATGATGATCCTCGT 60.599 55.000 11.47 0.00 31.64 4.18
43 44 0.105593 AGCGCATGATGATCCTCGTT 59.894 50.000 11.47 0.00 0.00 3.85
44 45 0.940126 GCGCATGATGATCCTCGTTT 59.060 50.000 0.30 0.00 0.00 3.60
45 46 1.070309 GCGCATGATGATCCTCGTTTC 60.070 52.381 0.30 0.00 0.00 2.78
46 47 2.204237 CGCATGATGATCCTCGTTTCA 58.796 47.619 0.00 0.00 0.00 2.69
47 48 2.220363 CGCATGATGATCCTCGTTTCAG 59.780 50.000 0.00 0.00 0.00 3.02
48 49 2.032204 GCATGATGATCCTCGTTTCAGC 60.032 50.000 0.00 0.00 0.00 4.26
49 50 3.464907 CATGATGATCCTCGTTTCAGCT 58.535 45.455 0.00 0.00 0.00 4.24
50 51 3.616956 TGATGATCCTCGTTTCAGCTT 57.383 42.857 0.00 0.00 0.00 3.74
51 52 3.264947 TGATGATCCTCGTTTCAGCTTG 58.735 45.455 0.00 0.00 0.00 4.01
52 53 2.839486 TGATCCTCGTTTCAGCTTGT 57.161 45.000 0.00 0.00 0.00 3.16
53 54 3.953712 TGATCCTCGTTTCAGCTTGTA 57.046 42.857 0.00 0.00 0.00 2.41
54 55 4.265904 TGATCCTCGTTTCAGCTTGTAA 57.734 40.909 0.00 0.00 0.00 2.41
55 56 4.637276 TGATCCTCGTTTCAGCTTGTAAA 58.363 39.130 0.00 0.00 0.00 2.01
75 76 9.658799 TTGTAAAGATGAACTCTGGATTCTAAG 57.341 33.333 0.00 0.00 33.29 2.18
76 77 7.766278 TGTAAAGATGAACTCTGGATTCTAAGC 59.234 37.037 0.00 0.00 33.29 3.09
77 78 4.942852 AGATGAACTCTGGATTCTAAGCG 58.057 43.478 0.00 0.00 31.12 4.68
78 79 2.893637 TGAACTCTGGATTCTAAGCGC 58.106 47.619 0.00 0.00 0.00 5.92
79 80 2.233676 TGAACTCTGGATTCTAAGCGCA 59.766 45.455 11.47 0.00 0.00 6.09
80 81 2.301577 ACTCTGGATTCTAAGCGCAC 57.698 50.000 11.47 0.00 0.00 5.34
81 82 1.550524 ACTCTGGATTCTAAGCGCACA 59.449 47.619 11.47 0.00 0.00 4.57
82 83 1.929836 CTCTGGATTCTAAGCGCACAC 59.070 52.381 11.47 0.00 0.00 3.82
83 84 1.275010 TCTGGATTCTAAGCGCACACA 59.725 47.619 11.47 0.00 0.00 3.72
84 85 2.076100 CTGGATTCTAAGCGCACACAA 58.924 47.619 11.47 0.00 0.00 3.33
85 86 2.076100 TGGATTCTAAGCGCACACAAG 58.924 47.619 11.47 0.00 0.00 3.16
86 87 2.289382 TGGATTCTAAGCGCACACAAGA 60.289 45.455 11.47 1.25 0.00 3.02
87 88 2.094417 GGATTCTAAGCGCACACAAGAC 59.906 50.000 11.47 0.00 0.00 3.01
88 89 2.526304 TTCTAAGCGCACACAAGACT 57.474 45.000 11.47 0.00 0.00 3.24
89 90 1.783284 TCTAAGCGCACACAAGACTG 58.217 50.000 11.47 0.00 0.00 3.51
90 91 0.792640 CTAAGCGCACACAAGACTGG 59.207 55.000 11.47 0.00 0.00 4.00
91 92 1.227999 TAAGCGCACACAAGACTGGC 61.228 55.000 11.47 0.00 0.00 4.85
92 93 3.279116 GCGCACACAAGACTGGCA 61.279 61.111 0.30 0.00 0.00 4.92
93 94 2.941333 CGCACACAAGACTGGCAG 59.059 61.111 14.16 14.16 0.00 4.85
94 95 1.595109 CGCACACAAGACTGGCAGA 60.595 57.895 23.66 0.00 0.00 4.26
95 96 1.563435 CGCACACAAGACTGGCAGAG 61.563 60.000 23.66 10.24 0.00 3.35
96 97 0.533755 GCACACAAGACTGGCAGAGT 60.534 55.000 23.66 10.90 37.76 3.24
97 98 1.959042 CACACAAGACTGGCAGAGTT 58.041 50.000 23.66 10.86 33.83 3.01
98 99 2.806745 GCACACAAGACTGGCAGAGTTA 60.807 50.000 23.66 0.00 33.83 2.24
99 100 3.466836 CACACAAGACTGGCAGAGTTAA 58.533 45.455 23.66 0.00 33.83 2.01
100 101 3.496130 CACACAAGACTGGCAGAGTTAAG 59.504 47.826 23.66 9.16 33.83 1.85
101 102 3.070018 CACAAGACTGGCAGAGTTAAGG 58.930 50.000 23.66 6.14 33.83 2.69
102 103 2.079925 CAAGACTGGCAGAGTTAAGGC 58.920 52.381 23.66 0.00 33.83 4.35
106 107 4.645809 GGCAGAGTTAAGGCCCTG 57.354 61.111 0.00 0.00 41.90 4.45
107 108 1.685820 GGCAGAGTTAAGGCCCTGT 59.314 57.895 0.00 0.00 41.90 4.00
108 109 0.038310 GGCAGAGTTAAGGCCCTGTT 59.962 55.000 0.00 0.00 41.90 3.16
109 110 1.547901 GGCAGAGTTAAGGCCCTGTTT 60.548 52.381 0.00 0.00 41.90 2.83
110 111 1.541588 GCAGAGTTAAGGCCCTGTTTG 59.458 52.381 0.00 0.00 0.00 2.93
111 112 2.162681 CAGAGTTAAGGCCCTGTTTGG 58.837 52.381 0.00 0.00 0.00 3.28
112 113 1.780919 AGAGTTAAGGCCCTGTTTGGT 59.219 47.619 0.00 0.00 0.00 3.67
113 114 2.177016 AGAGTTAAGGCCCTGTTTGGTT 59.823 45.455 0.00 0.00 0.00 3.67
114 115 2.557056 GAGTTAAGGCCCTGTTTGGTTC 59.443 50.000 0.00 0.00 0.00 3.62
115 116 2.091555 AGTTAAGGCCCTGTTTGGTTCA 60.092 45.455 0.00 0.00 0.00 3.18
116 117 2.286365 TAAGGCCCTGTTTGGTTCAG 57.714 50.000 0.00 0.00 0.00 3.02
117 118 1.115326 AAGGCCCTGTTTGGTTCAGC 61.115 55.000 0.00 0.00 0.00 4.26
118 119 1.531602 GGCCCTGTTTGGTTCAGCT 60.532 57.895 0.00 0.00 0.00 4.24
119 120 1.115326 GGCCCTGTTTGGTTCAGCTT 61.115 55.000 0.00 0.00 0.00 3.74
120 121 0.752658 GCCCTGTTTGGTTCAGCTTT 59.247 50.000 0.00 0.00 0.00 3.51
121 122 1.138859 GCCCTGTTTGGTTCAGCTTTT 59.861 47.619 0.00 0.00 0.00 2.27
122 123 2.364002 GCCCTGTTTGGTTCAGCTTTTA 59.636 45.455 0.00 0.00 0.00 1.52
123 124 3.006859 GCCCTGTTTGGTTCAGCTTTTAT 59.993 43.478 0.00 0.00 0.00 1.40
124 125 4.809673 CCCTGTTTGGTTCAGCTTTTATC 58.190 43.478 0.00 0.00 0.00 1.75
125 126 4.280677 CCCTGTTTGGTTCAGCTTTTATCA 59.719 41.667 0.00 0.00 0.00 2.15
126 127 5.221422 CCCTGTTTGGTTCAGCTTTTATCAA 60.221 40.000 0.00 0.00 0.00 2.57
127 128 5.691754 CCTGTTTGGTTCAGCTTTTATCAAC 59.308 40.000 0.00 0.00 0.00 3.18
128 129 5.277825 TGTTTGGTTCAGCTTTTATCAACG 58.722 37.500 0.00 0.00 0.00 4.10
129 130 4.497473 TTGGTTCAGCTTTTATCAACGG 57.503 40.909 0.00 0.00 0.00 4.44
130 131 3.745799 TGGTTCAGCTTTTATCAACGGA 58.254 40.909 0.00 0.00 0.00 4.69
131 132 4.331968 TGGTTCAGCTTTTATCAACGGAT 58.668 39.130 0.00 0.00 37.55 4.18
132 133 4.764823 TGGTTCAGCTTTTATCAACGGATT 59.235 37.500 0.00 0.00 34.89 3.01
133 134 5.242838 TGGTTCAGCTTTTATCAACGGATTT 59.757 36.000 0.00 0.00 34.89 2.17
134 135 5.800438 GGTTCAGCTTTTATCAACGGATTTC 59.200 40.000 0.00 0.00 34.89 2.17
135 136 5.216566 TCAGCTTTTATCAACGGATTTCG 57.783 39.130 0.00 0.00 45.88 3.46
136 137 3.786048 CAGCTTTTATCAACGGATTTCGC 59.214 43.478 0.00 0.00 43.89 4.70
137 138 3.689649 AGCTTTTATCAACGGATTTCGCT 59.310 39.130 0.00 0.00 43.89 4.93
138 139 3.786048 GCTTTTATCAACGGATTTCGCTG 59.214 43.478 0.00 0.00 43.89 5.18
139 140 3.398954 TTTATCAACGGATTTCGCTGC 57.601 42.857 0.00 0.00 43.89 5.25
140 141 2.309528 TATCAACGGATTTCGCTGCT 57.690 45.000 0.00 0.00 43.89 4.24
141 142 0.729116 ATCAACGGATTTCGCTGCTG 59.271 50.000 0.00 0.00 43.89 4.41
142 143 1.512734 CAACGGATTTCGCTGCTGC 60.513 57.895 5.34 5.34 43.89 5.25
162 163 3.763097 CGCAGCATAATCTGAACCAAA 57.237 42.857 0.00 0.00 36.19 3.28
163 164 3.688272 CGCAGCATAATCTGAACCAAAG 58.312 45.455 0.00 0.00 36.19 2.77
164 165 3.488047 CGCAGCATAATCTGAACCAAAGG 60.488 47.826 0.00 0.00 36.19 3.11
165 166 3.181483 GCAGCATAATCTGAACCAAAGGG 60.181 47.826 0.00 0.00 36.19 3.95
166 167 3.026694 AGCATAATCTGAACCAAAGGGC 58.973 45.455 0.00 0.00 37.90 5.19
167 168 2.223572 GCATAATCTGAACCAAAGGGCG 60.224 50.000 0.00 0.00 37.90 6.13
168 169 3.278574 CATAATCTGAACCAAAGGGCGA 58.721 45.455 0.00 0.00 37.90 5.54
169 170 2.286365 AATCTGAACCAAAGGGCGAA 57.714 45.000 0.00 0.00 37.90 4.70
170 171 1.534729 ATCTGAACCAAAGGGCGAAC 58.465 50.000 0.00 0.00 37.90 3.95
171 172 0.536460 TCTGAACCAAAGGGCGAACC 60.536 55.000 0.00 0.00 37.90 3.62
181 182 3.502572 GGCGAACCCAGCAGAATC 58.497 61.111 0.00 0.00 36.08 2.52
182 183 2.115291 GGCGAACCCAGCAGAATCC 61.115 63.158 0.00 0.00 36.08 3.01
183 184 2.464459 GCGAACCCAGCAGAATCCG 61.464 63.158 0.00 0.00 34.19 4.18
184 185 1.218047 CGAACCCAGCAGAATCCGA 59.782 57.895 0.00 0.00 0.00 4.55
185 186 0.179073 CGAACCCAGCAGAATCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
186 187 1.743772 CGAACCCAGCAGAATCCGATT 60.744 52.381 0.00 0.00 0.00 3.34
187 188 1.943340 GAACCCAGCAGAATCCGATTC 59.057 52.381 12.51 12.51 39.56 2.52
188 189 0.181350 ACCCAGCAGAATCCGATTCC 59.819 55.000 16.09 3.83 40.13 3.01
189 190 0.181114 CCCAGCAGAATCCGATTCCA 59.819 55.000 16.09 0.00 40.13 3.53
190 191 1.590932 CCAGCAGAATCCGATTCCAG 58.409 55.000 16.09 11.03 40.13 3.86
191 192 1.139654 CCAGCAGAATCCGATTCCAGA 59.860 52.381 16.09 0.00 40.13 3.86
192 193 2.420547 CCAGCAGAATCCGATTCCAGAA 60.421 50.000 16.09 0.00 40.13 3.02
193 194 3.273434 CAGCAGAATCCGATTCCAGAAA 58.727 45.455 16.09 0.00 40.13 2.52
194 195 3.881688 CAGCAGAATCCGATTCCAGAAAT 59.118 43.478 16.09 0.00 40.13 2.17
195 196 4.337555 CAGCAGAATCCGATTCCAGAAATT 59.662 41.667 16.09 0.00 40.13 1.82
196 197 4.578105 AGCAGAATCCGATTCCAGAAATTC 59.422 41.667 16.09 0.00 40.13 2.17
197 198 4.553547 GCAGAATCCGATTCCAGAAATTCG 60.554 45.833 16.09 0.00 40.13 3.34
198 199 3.561725 AGAATCCGATTCCAGAAATTCGC 59.438 43.478 16.09 0.00 40.13 4.70
199 200 2.691409 TCCGATTCCAGAAATTCGCT 57.309 45.000 0.00 0.00 0.00 4.93
200 201 2.279741 TCCGATTCCAGAAATTCGCTG 58.720 47.619 2.19 2.19 0.00 5.18
201 202 1.268234 CCGATTCCAGAAATTCGCTGC 60.268 52.381 3.41 0.00 32.06 5.25
202 203 1.268234 CGATTCCAGAAATTCGCTGCC 60.268 52.381 0.00 0.00 32.06 4.85
203 204 1.745087 GATTCCAGAAATTCGCTGCCA 59.255 47.619 0.00 0.00 32.06 4.92
204 205 1.614996 TTCCAGAAATTCGCTGCCAA 58.385 45.000 0.00 0.00 32.06 4.52
205 206 1.614996 TCCAGAAATTCGCTGCCAAA 58.385 45.000 0.00 0.00 32.06 3.28
206 207 1.959985 TCCAGAAATTCGCTGCCAAAA 59.040 42.857 0.00 0.00 32.06 2.44
207 208 2.562298 TCCAGAAATTCGCTGCCAAAAT 59.438 40.909 0.00 0.00 32.06 1.82
208 209 2.925563 CCAGAAATTCGCTGCCAAAATC 59.074 45.455 0.00 0.00 32.06 2.17
209 210 3.367703 CCAGAAATTCGCTGCCAAAATCT 60.368 43.478 0.00 0.00 32.06 2.40
210 211 3.611113 CAGAAATTCGCTGCCAAAATCTG 59.389 43.478 9.62 9.62 0.00 2.90
211 212 3.507233 AGAAATTCGCTGCCAAAATCTGA 59.493 39.130 0.00 0.00 0.00 3.27
212 213 3.940209 AATTCGCTGCCAAAATCTGAA 57.060 38.095 0.00 0.00 0.00 3.02
213 214 2.704725 TTCGCTGCCAAAATCTGAAC 57.295 45.000 0.00 0.00 0.00 3.18
214 215 0.881118 TCGCTGCCAAAATCTGAACC 59.119 50.000 0.00 0.00 0.00 3.62
215 216 0.597568 CGCTGCCAAAATCTGAACCA 59.402 50.000 0.00 0.00 0.00 3.67
216 217 1.000385 CGCTGCCAAAATCTGAACCAA 60.000 47.619 0.00 0.00 0.00 3.67
217 218 2.545532 CGCTGCCAAAATCTGAACCAAA 60.546 45.455 0.00 0.00 0.00 3.28
218 219 3.465871 GCTGCCAAAATCTGAACCAAAA 58.534 40.909 0.00 0.00 0.00 2.44
219 220 3.495753 GCTGCCAAAATCTGAACCAAAAG 59.504 43.478 0.00 0.00 0.00 2.27
220 221 3.465871 TGCCAAAATCTGAACCAAAAGC 58.534 40.909 0.00 0.00 0.00 3.51
221 222 2.476241 GCCAAAATCTGAACCAAAAGCG 59.524 45.455 0.00 0.00 0.00 4.68
222 223 3.059166 CCAAAATCTGAACCAAAAGCGG 58.941 45.455 0.00 0.00 0.00 5.52
223 224 3.243704 CCAAAATCTGAACCAAAAGCGGA 60.244 43.478 0.00 0.00 0.00 5.54
224 225 4.367450 CAAAATCTGAACCAAAAGCGGAA 58.633 39.130 0.00 0.00 0.00 4.30
225 226 3.923017 AATCTGAACCAAAAGCGGAAG 57.077 42.857 0.00 0.00 0.00 3.46
237 238 2.105128 CGGAAGCAGCCTAGGACG 59.895 66.667 14.75 2.80 0.00 4.79
238 239 2.711922 CGGAAGCAGCCTAGGACGT 61.712 63.158 14.75 0.00 0.00 4.34
239 240 1.153549 GGAAGCAGCCTAGGACGTG 60.154 63.158 14.75 7.42 0.00 4.49
240 241 1.811679 GAAGCAGCCTAGGACGTGC 60.812 63.158 14.75 17.30 36.10 5.34
241 242 2.681778 AGCAGCCTAGGACGTGCT 60.682 61.111 21.86 21.86 41.47 4.40
242 243 2.266055 GCAGCCTAGGACGTGCTT 59.734 61.111 16.89 0.00 31.77 3.91
243 244 1.376037 GCAGCCTAGGACGTGCTTT 60.376 57.895 16.89 0.00 31.77 3.51
244 245 0.955919 GCAGCCTAGGACGTGCTTTT 60.956 55.000 16.89 0.00 31.77 2.27
245 246 1.079503 CAGCCTAGGACGTGCTTTTC 58.920 55.000 16.89 4.45 31.77 2.29
246 247 0.685097 AGCCTAGGACGTGCTTTTCA 59.315 50.000 16.89 0.00 29.17 2.69
247 248 1.071699 AGCCTAGGACGTGCTTTTCAA 59.928 47.619 16.89 0.00 29.17 2.69
248 249 1.877443 GCCTAGGACGTGCTTTTCAAA 59.123 47.619 16.89 0.00 0.00 2.69
249 250 2.292292 GCCTAGGACGTGCTTTTCAAAA 59.708 45.455 16.89 0.00 0.00 2.44
250 251 3.057526 GCCTAGGACGTGCTTTTCAAAAT 60.058 43.478 16.89 0.00 0.00 1.82
251 252 4.723248 CCTAGGACGTGCTTTTCAAAATC 58.277 43.478 16.89 0.00 0.00 2.17
252 253 4.455877 CCTAGGACGTGCTTTTCAAAATCT 59.544 41.667 16.89 0.00 0.00 2.40
253 254 4.228912 AGGACGTGCTTTTCAAAATCTG 57.771 40.909 2.68 0.00 0.00 2.90
254 255 3.882888 AGGACGTGCTTTTCAAAATCTGA 59.117 39.130 2.68 0.00 0.00 3.27
255 256 4.520492 AGGACGTGCTTTTCAAAATCTGAT 59.480 37.500 2.68 0.00 32.78 2.90
256 257 5.010012 AGGACGTGCTTTTCAAAATCTGATT 59.990 36.000 2.68 0.00 32.78 2.57
257 258 5.691754 GGACGTGCTTTTCAAAATCTGATTT 59.308 36.000 9.76 9.76 32.78 2.17
258 259 6.129088 GGACGTGCTTTTCAAAATCTGATTTC 60.129 38.462 15.43 3.00 32.78 2.17
259 260 5.399301 ACGTGCTTTTCAAAATCTGATTTCG 59.601 36.000 15.43 12.94 32.78 3.46
260 261 5.602516 GTGCTTTTCAAAATCTGATTTCGC 58.397 37.500 15.43 11.40 32.78 4.70
261 262 5.403466 GTGCTTTTCAAAATCTGATTTCGCT 59.597 36.000 15.43 0.00 32.78 4.93
262 263 5.403166 TGCTTTTCAAAATCTGATTTCGCTG 59.597 36.000 15.43 10.68 32.78 5.18
263 264 5.667156 GCTTTTCAAAATCTGATTTCGCTGC 60.667 40.000 15.43 11.35 32.78 5.25
264 265 3.121559 TCAAAATCTGATTTCGCTGCG 57.878 42.857 17.25 17.25 0.00 5.18
265 266 2.159531 TCAAAATCTGATTTCGCTGCGG 60.160 45.455 23.03 4.71 0.00 5.69
266 267 0.734889 AAATCTGATTTCGCTGCGGG 59.265 50.000 23.03 6.04 0.00 6.13
267 268 1.718757 AATCTGATTTCGCTGCGGGC 61.719 55.000 23.03 9.52 37.64 6.13
268 269 3.880846 CTGATTTCGCTGCGGGCC 61.881 66.667 23.03 9.62 37.74 5.80
269 270 4.713735 TGATTTCGCTGCGGGCCA 62.714 61.111 23.03 12.06 37.74 5.36
270 271 3.439540 GATTTCGCTGCGGGCCAA 61.440 61.111 23.03 5.96 37.74 4.52
271 272 2.988684 ATTTCGCTGCGGGCCAAA 60.989 55.556 23.03 15.06 35.68 3.28
272 273 2.485188 GATTTCGCTGCGGGCCAAAA 62.485 55.000 23.03 14.68 34.95 2.44
273 274 1.887344 ATTTCGCTGCGGGCCAAAAT 61.887 50.000 23.03 16.27 34.95 1.82
274 275 2.485188 TTTCGCTGCGGGCCAAAATC 62.485 55.000 23.03 0.00 37.74 2.17
275 276 3.443045 CGCTGCGGGCCAAAATCT 61.443 61.111 15.40 0.00 37.74 2.40
276 277 2.112198 CGCTGCGGGCCAAAATCTA 61.112 57.895 15.40 0.00 37.74 1.98
277 278 1.653094 CGCTGCGGGCCAAAATCTAA 61.653 55.000 15.40 0.00 37.74 2.10
278 279 0.530288 GCTGCGGGCCAAAATCTAAA 59.470 50.000 4.39 0.00 34.27 1.85
279 280 1.067213 GCTGCGGGCCAAAATCTAAAA 60.067 47.619 4.39 0.00 34.27 1.52
280 281 2.611722 GCTGCGGGCCAAAATCTAAAAA 60.612 45.455 4.39 0.00 34.27 1.94
304 305 9.930693 AAAAACTGTATTAACTGGTTTGTCAAA 57.069 25.926 0.00 0.00 41.84 2.69
306 307 9.528018 AAACTGTATTAACTGGTTTGTCAAATG 57.472 29.630 0.40 0.00 31.03 2.32
307 308 8.458573 ACTGTATTAACTGGTTTGTCAAATGA 57.541 30.769 0.40 0.00 0.00 2.57
308 309 8.349983 ACTGTATTAACTGGTTTGTCAAATGAC 58.650 33.333 6.60 6.60 44.97 3.06
309 310 7.653647 TGTATTAACTGGTTTGTCAAATGACC 58.346 34.615 10.83 0.00 44.15 4.02
310 311 6.976934 ATTAACTGGTTTGTCAAATGACCT 57.023 33.333 10.83 0.00 44.15 3.85
311 312 9.005777 GTATTAACTGGTTTGTCAAATGACCTA 57.994 33.333 10.83 0.00 44.15 3.08
312 313 5.767816 AACTGGTTTGTCAAATGACCTAC 57.232 39.130 10.83 8.41 44.15 3.18
313 314 4.787551 ACTGGTTTGTCAAATGACCTACA 58.212 39.130 10.83 4.62 44.15 2.74
314 315 5.385198 ACTGGTTTGTCAAATGACCTACAT 58.615 37.500 10.83 0.00 44.15 2.29
315 316 5.473504 ACTGGTTTGTCAAATGACCTACATC 59.526 40.000 10.83 0.00 44.15 3.06
316 317 5.630121 TGGTTTGTCAAATGACCTACATCT 58.370 37.500 10.83 0.00 44.15 2.90
317 318 6.068010 TGGTTTGTCAAATGACCTACATCTT 58.932 36.000 10.83 0.00 44.15 2.40
318 319 6.549364 TGGTTTGTCAAATGACCTACATCTTT 59.451 34.615 10.83 0.00 44.15 2.52
319 320 7.069331 TGGTTTGTCAAATGACCTACATCTTTT 59.931 33.333 10.83 0.00 44.15 2.27
320 321 7.926018 GGTTTGTCAAATGACCTACATCTTTTT 59.074 33.333 10.83 0.00 44.15 1.94
321 322 8.968242 GTTTGTCAAATGACCTACATCTTTTTC 58.032 33.333 10.83 0.00 44.15 2.29
322 323 7.815840 TGTCAAATGACCTACATCTTTTTCA 57.184 32.000 10.83 0.00 44.15 2.69
323 324 7.648142 TGTCAAATGACCTACATCTTTTTCAC 58.352 34.615 10.83 0.00 44.15 3.18
324 325 7.284261 TGTCAAATGACCTACATCTTTTTCACA 59.716 33.333 10.83 0.00 44.15 3.58
325 326 8.299570 GTCAAATGACCTACATCTTTTTCACAT 58.700 33.333 2.04 0.00 38.38 3.21
326 327 8.514594 TCAAATGACCTACATCTTTTTCACATC 58.485 33.333 0.00 0.00 38.38 3.06
327 328 8.298854 CAAATGACCTACATCTTTTTCACATCA 58.701 33.333 0.00 0.00 38.38 3.07
328 329 7.621428 ATGACCTACATCTTTTTCACATCAG 57.379 36.000 0.00 0.00 33.46 2.90
329 330 6.768483 TGACCTACATCTTTTTCACATCAGA 58.232 36.000 0.00 0.00 0.00 3.27
330 331 7.397221 TGACCTACATCTTTTTCACATCAGAT 58.603 34.615 0.00 0.00 0.00 2.90
331 332 7.884877 TGACCTACATCTTTTTCACATCAGATT 59.115 33.333 0.00 0.00 0.00 2.40
332 333 8.641498 ACCTACATCTTTTTCACATCAGATTT 57.359 30.769 0.00 0.00 0.00 2.17
333 334 9.082313 ACCTACATCTTTTTCACATCAGATTTT 57.918 29.630 0.00 0.00 0.00 1.82
334 335 9.918630 CCTACATCTTTTTCACATCAGATTTTT 57.081 29.630 0.00 0.00 0.00 1.94
337 338 9.252962 ACATCTTTTTCACATCAGATTTTTCAC 57.747 29.630 0.00 0.00 0.00 3.18
338 339 9.251792 CATCTTTTTCACATCAGATTTTTCACA 57.748 29.630 0.00 0.00 0.00 3.58
339 340 8.861033 TCTTTTTCACATCAGATTTTTCACAG 57.139 30.769 0.00 0.00 0.00 3.66
340 341 7.436080 TCTTTTTCACATCAGATTTTTCACAGC 59.564 33.333 0.00 0.00 0.00 4.40
341 342 6.395426 TTTCACATCAGATTTTTCACAGCT 57.605 33.333 0.00 0.00 0.00 4.24
342 343 5.366829 TCACATCAGATTTTTCACAGCTG 57.633 39.130 13.48 13.48 0.00 4.24
343 344 4.823442 TCACATCAGATTTTTCACAGCTGT 59.177 37.500 15.25 15.25 0.00 4.40
344 345 5.300034 TCACATCAGATTTTTCACAGCTGTT 59.700 36.000 18.94 0.15 0.00 3.16
345 346 5.981315 CACATCAGATTTTTCACAGCTGTTT 59.019 36.000 18.94 0.00 0.00 2.83
346 347 6.477688 CACATCAGATTTTTCACAGCTGTTTT 59.522 34.615 18.94 0.00 0.00 2.43
347 348 7.010738 CACATCAGATTTTTCACAGCTGTTTTT 59.989 33.333 18.94 0.00 0.00 1.94
367 368 6.890663 TTTTTCACAGCAGATTTTTGACAG 57.109 33.333 0.00 0.00 0.00 3.51
368 369 3.631145 TCACAGCAGATTTTTGACAGC 57.369 42.857 0.00 0.00 0.00 4.40
369 370 3.216800 TCACAGCAGATTTTTGACAGCT 58.783 40.909 0.00 0.00 0.00 4.24
370 371 4.388485 TCACAGCAGATTTTTGACAGCTA 58.612 39.130 0.00 0.00 0.00 3.32
371 372 4.214119 TCACAGCAGATTTTTGACAGCTAC 59.786 41.667 0.00 0.00 0.00 3.58
372 373 4.214971 CACAGCAGATTTTTGACAGCTACT 59.785 41.667 0.00 0.00 0.00 2.57
373 374 4.823989 ACAGCAGATTTTTGACAGCTACTT 59.176 37.500 0.00 0.00 0.00 2.24
374 375 5.300286 ACAGCAGATTTTTGACAGCTACTTT 59.700 36.000 0.00 0.00 0.00 2.66
375 376 6.183360 ACAGCAGATTTTTGACAGCTACTTTT 60.183 34.615 0.00 0.00 0.00 2.27
376 377 7.013274 ACAGCAGATTTTTGACAGCTACTTTTA 59.987 33.333 0.00 0.00 0.00 1.52
377 378 7.536622 CAGCAGATTTTTGACAGCTACTTTTAG 59.463 37.037 0.00 0.00 0.00 1.85
378 379 7.445402 AGCAGATTTTTGACAGCTACTTTTAGA 59.555 33.333 0.00 0.00 0.00 2.10
379 380 8.076178 GCAGATTTTTGACAGCTACTTTTAGAA 58.924 33.333 0.00 0.00 0.00 2.10
380 381 9.950680 CAGATTTTTGACAGCTACTTTTAGAAA 57.049 29.630 0.00 0.00 0.00 2.52
383 384 9.914131 ATTTTTGACAGCTACTTTTAGAAATCC 57.086 29.630 0.00 0.00 0.00 3.01
384 385 8.458573 TTTTGACAGCTACTTTTAGAAATCCA 57.541 30.769 0.00 0.00 0.00 3.41
385 386 7.435068 TTGACAGCTACTTTTAGAAATCCAC 57.565 36.000 0.00 0.00 0.00 4.02
386 387 6.530120 TGACAGCTACTTTTAGAAATCCACA 58.470 36.000 0.00 0.00 0.00 4.17
387 388 6.650807 TGACAGCTACTTTTAGAAATCCACAG 59.349 38.462 0.00 0.00 0.00 3.66
388 389 5.412904 ACAGCTACTTTTAGAAATCCACAGC 59.587 40.000 0.00 0.00 0.00 4.40
389 390 4.944317 AGCTACTTTTAGAAATCCACAGCC 59.056 41.667 0.00 0.00 0.00 4.85
390 391 4.201822 GCTACTTTTAGAAATCCACAGCCG 60.202 45.833 0.00 0.00 0.00 5.52
391 392 4.015872 ACTTTTAGAAATCCACAGCCGA 57.984 40.909 0.00 0.00 0.00 5.54
392 393 4.394729 ACTTTTAGAAATCCACAGCCGAA 58.605 39.130 0.00 0.00 0.00 4.30
393 394 4.215613 ACTTTTAGAAATCCACAGCCGAAC 59.784 41.667 0.00 0.00 0.00 3.95
394 395 2.396590 TAGAAATCCACAGCCGAACC 57.603 50.000 0.00 0.00 0.00 3.62
395 396 0.400213 AGAAATCCACAGCCGAACCA 59.600 50.000 0.00 0.00 0.00 3.67
396 397 1.202879 AGAAATCCACAGCCGAACCAA 60.203 47.619 0.00 0.00 0.00 3.67
397 398 1.611491 GAAATCCACAGCCGAACCAAA 59.389 47.619 0.00 0.00 0.00 3.28
398 399 0.958822 AATCCACAGCCGAACCAAAC 59.041 50.000 0.00 0.00 0.00 2.93
399 400 0.179004 ATCCACAGCCGAACCAAACA 60.179 50.000 0.00 0.00 0.00 2.83
400 401 0.817634 TCCACAGCCGAACCAAACAG 60.818 55.000 0.00 0.00 0.00 3.16
401 402 1.654220 CACAGCCGAACCAAACAGG 59.346 57.895 0.00 0.00 45.67 4.00
402 403 1.528309 ACAGCCGAACCAAACAGGG 60.528 57.895 0.00 0.00 43.89 4.45
403 404 2.597510 AGCCGAACCAAACAGGGC 60.598 61.111 0.00 0.00 43.89 5.19
404 405 3.680786 GCCGAACCAAACAGGGCC 61.681 66.667 0.00 0.00 43.89 5.80
405 406 2.115266 CCGAACCAAACAGGGCCT 59.885 61.111 0.00 0.00 43.89 5.19
406 407 1.377229 CCGAACCAAACAGGGCCTA 59.623 57.895 5.28 0.00 43.89 3.93
407 408 0.250989 CCGAACCAAACAGGGCCTAA 60.251 55.000 5.28 0.00 43.89 2.69
408 409 1.165270 CGAACCAAACAGGGCCTAAG 58.835 55.000 5.28 0.00 43.89 2.18
409 410 1.271163 CGAACCAAACAGGGCCTAAGA 60.271 52.381 5.28 0.00 43.89 2.10
410 411 2.618045 CGAACCAAACAGGGCCTAAGAT 60.618 50.000 5.28 0.00 43.89 2.40
411 412 3.431415 GAACCAAACAGGGCCTAAGATT 58.569 45.455 5.28 0.00 43.89 2.40
412 413 2.807676 ACCAAACAGGGCCTAAGATTG 58.192 47.619 5.28 6.30 43.89 2.67
413 414 2.378547 ACCAAACAGGGCCTAAGATTGA 59.621 45.455 5.28 0.00 43.89 2.57
416 417 5.200483 CCAAACAGGGCCTAAGATTGATAA 58.800 41.667 5.28 0.00 0.00 1.75
453 454 8.651588 GGATATCTTCACATAGATTTTGCGTAG 58.348 37.037 2.05 0.00 36.34 3.51
454 455 6.851222 ATCTTCACATAGATTTTGCGTAGG 57.149 37.500 0.00 0.00 30.76 3.18
468 469 2.598686 CGTAGGCTTTCCCTAGGTTC 57.401 55.000 8.29 0.00 46.80 3.62
481 482 2.428890 CCTAGGTTCTTCTCGCTGACAT 59.571 50.000 0.00 0.00 0.00 3.06
485 486 3.068873 AGGTTCTTCTCGCTGACATATCC 59.931 47.826 0.00 0.00 0.00 2.59
487 488 4.502259 GGTTCTTCTCGCTGACATATCCAT 60.502 45.833 0.00 0.00 0.00 3.41
505 506 2.259618 CATCCGTCATCTTCGTTCGTT 58.740 47.619 0.00 0.00 0.00 3.85
562 564 4.816786 TTTTAAACACTGGGTAGTTCGC 57.183 40.909 0.00 0.00 34.07 4.70
563 565 3.756933 TTAAACACTGGGTAGTTCGCT 57.243 42.857 0.00 0.00 34.07 4.93
564 566 4.870123 TTAAACACTGGGTAGTTCGCTA 57.130 40.909 0.00 0.00 34.07 4.26
573 575 2.055684 GTAGTTCGCTACCTCTCCCT 57.944 55.000 0.00 0.00 43.18 4.20
574 576 1.677052 GTAGTTCGCTACCTCTCCCTG 59.323 57.143 0.00 0.00 43.18 4.45
575 577 1.142097 GTTCGCTACCTCTCCCTGC 59.858 63.158 0.00 0.00 0.00 4.85
576 578 1.304962 TTCGCTACCTCTCCCTGCA 60.305 57.895 0.00 0.00 0.00 4.41
577 579 0.687757 TTCGCTACCTCTCCCTGCAT 60.688 55.000 0.00 0.00 0.00 3.96
578 580 0.185175 TCGCTACCTCTCCCTGCATA 59.815 55.000 0.00 0.00 0.00 3.14
579 581 1.203063 TCGCTACCTCTCCCTGCATAT 60.203 52.381 0.00 0.00 0.00 1.78
599 601 1.188863 GGGTCTGAGGCGTAAAGGTA 58.811 55.000 0.00 0.00 0.00 3.08
606 611 4.062991 CTGAGGCGTAAAGGTAAACTGTT 58.937 43.478 0.00 0.00 0.00 3.16
619 627 8.599055 AAGGTAAACTGTTAAGTACAAGCTAC 57.401 34.615 0.00 0.00 34.77 3.58
623 631 4.235360 ACTGTTAAGTACAAGCTACAGCG 58.765 43.478 8.56 0.00 39.75 5.18
635 643 5.289595 CAAGCTACAGCGTGGAAGAATATA 58.710 41.667 9.00 0.00 44.75 0.86
636 644 5.928839 CAAGCTACAGCGTGGAAGAATATAT 59.071 40.000 9.00 0.00 44.75 0.86
637 645 7.090808 CAAGCTACAGCGTGGAAGAATATATA 58.909 38.462 9.00 0.00 44.75 0.86
654 664 7.680310 AGAATATATATCCACAAGCCTACAGGT 59.320 37.037 0.00 0.00 37.57 4.00
673 686 4.702612 CAGGTAGGTATCTCGTATGCAGAT 59.297 45.833 0.00 0.00 34.80 2.90
683 696 2.351418 TCGTATGCAGATCTTTTTGCCG 59.649 45.455 0.00 0.00 39.54 5.69
684 697 2.351418 CGTATGCAGATCTTTTTGCCGA 59.649 45.455 0.00 0.00 39.54 5.54
691 704 4.808558 CAGATCTTTTTGCCGATCCAAAA 58.191 39.130 0.00 5.95 41.46 2.44
692 705 5.229423 CAGATCTTTTTGCCGATCCAAAAA 58.771 37.500 16.69 16.69 46.54 1.94
733 746 1.086696 CATGTTTGCAGGTCCTACCG 58.913 55.000 0.00 0.00 44.90 4.02
740 753 1.677552 CAGGTCCTACCGGCAACTT 59.322 57.895 0.00 0.00 44.90 2.66
776 790 6.506500 AGAACAGATAGCAAAGGAACAATG 57.493 37.500 0.00 0.00 0.00 2.82
836 854 0.666577 ACGAGGAAACGAAGAAGCGG 60.667 55.000 0.00 0.00 37.03 5.52
909 927 3.244911 CCTAAGGTTCCTTGCTTTCCTCA 60.245 47.826 13.64 0.00 0.00 3.86
916 934 3.214328 TCCTTGCTTTCCTCACAACTTC 58.786 45.455 0.00 0.00 0.00 3.01
917 935 3.117888 TCCTTGCTTTCCTCACAACTTCT 60.118 43.478 0.00 0.00 0.00 2.85
953 977 0.894184 AGCTTTCTCCGGTCAGTCGA 60.894 55.000 0.00 0.00 0.00 4.20
957 981 4.813526 CTCCGGTCAGTCGACGCG 62.814 72.222 10.46 3.53 43.61 6.01
987 1011 1.910772 ACCGCAGAGGAAGAGCAGT 60.911 57.895 0.00 0.00 45.00 4.40
988 1012 0.612174 ACCGCAGAGGAAGAGCAGTA 60.612 55.000 0.00 0.00 45.00 2.74
1020 1044 1.200519 TGGACTACAGGGTATGTGCC 58.799 55.000 0.00 0.00 43.80 5.01
1023 1047 2.628657 GGACTACAGGGTATGTGCCTAG 59.371 54.545 0.00 0.00 43.80 3.02
1043 1084 2.744307 GAAGGCAGCAGCAGCAACAC 62.744 60.000 12.41 0.00 45.49 3.32
1057 1098 2.762360 AACACTGACGTGGTGTGTG 58.238 52.632 19.96 11.38 45.64 3.82
1110 1151 1.065854 AGTTCTACTGCATGACCCTGC 60.066 52.381 0.00 0.00 42.62 4.85
1182 1229 1.136305 TCCAGATGCAAGGTACGTAGC 59.864 52.381 16.85 16.85 0.00 3.58
1239 1287 1.665679 CGTGTCTTGCTCTGTGTTGTT 59.334 47.619 0.00 0.00 0.00 2.83
1240 1288 2.863740 CGTGTCTTGCTCTGTGTTGTTA 59.136 45.455 0.00 0.00 0.00 2.41
1241 1289 3.494626 CGTGTCTTGCTCTGTGTTGTTAT 59.505 43.478 0.00 0.00 0.00 1.89
1376 1424 2.842256 AACCGGCGCGTCGAGATAT 61.842 57.895 37.21 12.54 0.00 1.63
1473 1529 0.480690 AACCCACCTTGTATGCACCA 59.519 50.000 0.00 0.00 0.00 4.17
1496 1552 2.789917 GCACTCGGATGCTGCTTG 59.210 61.111 0.00 0.00 42.62 4.01
1497 1553 2.037136 GCACTCGGATGCTGCTTGT 61.037 57.895 0.00 0.00 42.62 3.16
1498 1554 0.740868 GCACTCGGATGCTGCTTGTA 60.741 55.000 0.00 0.00 42.62 2.41
1508 1564 4.578105 GGATGCTGCTTGTATTAGCTTCTT 59.422 41.667 0.00 0.00 41.76 2.52
1509 1565 4.952262 TGCTGCTTGTATTAGCTTCTTG 57.048 40.909 0.00 0.00 41.76 3.02
1516 1573 5.064071 GCTTGTATTAGCTTCTTGACCTGAC 59.936 44.000 0.00 0.00 38.15 3.51
1536 1594 4.262617 GACACTTTCAGGAGGATTTACCC 58.737 47.826 0.00 0.00 40.05 3.69
1537 1595 3.655777 ACACTTTCAGGAGGATTTACCCA 59.344 43.478 0.00 0.00 40.05 4.51
1559 1619 2.094894 CCTTCTTGTGTGCGAGCTTATG 59.905 50.000 0.00 0.00 0.00 1.90
1562 1622 3.398406 TCTTGTGTGCGAGCTTATGAAA 58.602 40.909 0.00 0.00 0.00 2.69
1584 1644 8.896744 TGAAATCATCATTTTGATCTGTAGTCC 58.103 33.333 0.00 0.00 34.28 3.85
1585 1645 9.118300 GAAATCATCATTTTGATCTGTAGTCCT 57.882 33.333 0.00 0.00 34.28 3.85
1588 1648 7.855375 TCATCATTTTGATCTGTAGTCCTCTT 58.145 34.615 0.00 0.00 34.28 2.85
1594 1654 7.962995 TTTGATCTGTAGTCCTCTTATGACT 57.037 36.000 0.00 0.00 44.85 3.41
1637 1714 1.312815 GCGGCCTGCTTAATCTTGAT 58.687 50.000 11.61 0.00 41.73 2.57
1681 1783 4.479619 CAAGCCACAAACAAGCTATTCTC 58.520 43.478 0.00 0.00 35.30 2.87
1735 1840 8.778059 ACCCCAAAGAGTGTAGAATTATTCATA 58.222 33.333 7.74 0.00 0.00 2.15
1737 1842 9.838339 CCCAAAGAGTGTAGAATTATTCATAGT 57.162 33.333 7.74 0.00 0.00 2.12
1833 1946 6.009474 CGCGAATTCTCCATAACATTATTCG 58.991 40.000 0.00 0.00 43.20 3.34
1841 1954 9.435688 TTCTCCATAACATTATTCGTATCATGG 57.564 33.333 0.00 0.00 33.28 3.66
1866 1980 4.640201 CCAATTGGACCAGATAAATCACGT 59.360 41.667 20.50 0.00 37.39 4.49
1867 1981 5.820423 CCAATTGGACCAGATAAATCACGTA 59.180 40.000 20.50 0.00 37.39 3.57
1871 1985 3.795101 GGACCAGATAAATCACGTACACG 59.205 47.826 0.00 0.00 46.33 4.49
1919 2033 0.395862 TAAGCTCTCAGGGTCCTCGG 60.396 60.000 0.00 0.00 0.00 4.63
2043 2157 1.745653 GGGTCCTGAGCTGCATTTTAC 59.254 52.381 1.02 0.00 0.00 2.01
2146 2261 8.932791 TGAAGTACGATCTTAGGAAAAATTCAC 58.067 33.333 0.00 0.00 0.00 3.18
2157 2272 8.804688 TTAGGAAAAATTCACAATAAACACGG 57.195 30.769 0.00 0.00 0.00 4.94
2176 2291 2.095853 CGGCATTTGTAGGTTAGCACTG 59.904 50.000 0.00 0.00 0.00 3.66
2194 2309 4.489810 CACTGAGAATGTACAGTCTGGAC 58.510 47.826 28.96 15.67 44.07 4.02
2202 2317 5.946942 ATGTACAGTCTGGACAGAATCAT 57.053 39.130 22.24 2.56 45.68 2.45
2245 2360 2.985957 ACTGCCACAAAGCACATTTT 57.014 40.000 0.00 0.00 38.00 1.82
2246 2361 4.399004 AACTGCCACAAAGCACATTTTA 57.601 36.364 0.00 0.00 38.00 1.52
2249 2364 4.202243 ACTGCCACAAAGCACATTTTATGT 60.202 37.500 0.00 0.00 46.22 2.29
2347 2558 0.330604 ACAGAACATCCTGCAGCCAT 59.669 50.000 8.66 0.00 37.68 4.40
2381 2592 5.069501 GCATGAAGCAGAAATCTTTTCCT 57.930 39.130 0.00 0.00 44.79 3.36
2382 2593 6.199937 GCATGAAGCAGAAATCTTTTCCTA 57.800 37.500 0.00 0.00 44.79 2.94
2383 2594 6.624423 GCATGAAGCAGAAATCTTTTCCTAA 58.376 36.000 0.00 0.00 44.79 2.69
2384 2595 7.263496 GCATGAAGCAGAAATCTTTTCCTAAT 58.737 34.615 0.00 0.00 44.79 1.73
2385 2596 7.763071 GCATGAAGCAGAAATCTTTTCCTAATT 59.237 33.333 0.00 0.00 44.79 1.40
2438 2649 0.099436 CAAATAGTGCTTCTGCCCGC 59.901 55.000 0.00 0.00 38.71 6.13
2439 2650 1.032114 AAATAGTGCTTCTGCCCGCC 61.032 55.000 0.00 0.00 38.71 6.13
2440 2651 2.893682 AATAGTGCTTCTGCCCGCCC 62.894 60.000 0.00 0.00 38.71 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.534729 ACGATGGAAAGTTGAAGGCC 58.465 50.000 0.00 0.00 0.00 5.19
1 2 4.394920 TGATAACGATGGAAAGTTGAAGGC 59.605 41.667 0.00 0.00 0.00 4.35
2 3 5.447818 GCTGATAACGATGGAAAGTTGAAGG 60.448 44.000 0.00 0.00 0.00 3.46
3 4 5.563842 GCTGATAACGATGGAAAGTTGAAG 58.436 41.667 0.00 0.00 0.00 3.02
4 5 4.092821 CGCTGATAACGATGGAAAGTTGAA 59.907 41.667 0.00 0.00 0.00 2.69
5 6 3.616821 CGCTGATAACGATGGAAAGTTGA 59.383 43.478 0.00 0.00 0.00 3.18
6 7 3.785505 GCGCTGATAACGATGGAAAGTTG 60.786 47.826 0.00 0.00 0.00 3.16
7 8 2.351726 GCGCTGATAACGATGGAAAGTT 59.648 45.455 0.00 0.00 0.00 2.66
8 9 1.933853 GCGCTGATAACGATGGAAAGT 59.066 47.619 0.00 0.00 0.00 2.66
9 10 1.933181 TGCGCTGATAACGATGGAAAG 59.067 47.619 9.73 0.00 0.00 2.62
10 11 2.017138 TGCGCTGATAACGATGGAAA 57.983 45.000 9.73 0.00 0.00 3.13
11 12 1.866601 CATGCGCTGATAACGATGGAA 59.133 47.619 9.73 0.00 0.00 3.53
12 13 1.068434 TCATGCGCTGATAACGATGGA 59.932 47.619 9.73 0.00 0.00 3.41
13 14 1.501169 TCATGCGCTGATAACGATGG 58.499 50.000 9.73 0.00 0.00 3.51
14 15 2.733026 TCATCATGCGCTGATAACGATG 59.267 45.455 17.93 13.73 42.91 3.84
15 16 3.030668 TCATCATGCGCTGATAACGAT 57.969 42.857 17.93 4.15 42.91 3.73
16 17 2.507339 TCATCATGCGCTGATAACGA 57.493 45.000 17.93 11.12 42.91 3.85
17 18 2.093310 GGATCATCATGCGCTGATAACG 59.907 50.000 17.93 9.45 42.91 3.18
18 19 3.332919 AGGATCATCATGCGCTGATAAC 58.667 45.455 17.93 10.98 42.91 1.89
19 20 3.593096 GAGGATCATCATGCGCTGATAA 58.407 45.455 17.93 8.19 42.91 1.75
20 21 2.416431 CGAGGATCATCATGCGCTGATA 60.416 50.000 17.93 10.00 42.91 2.15
21 22 1.672145 CGAGGATCATCATGCGCTGAT 60.672 52.381 9.73 9.53 45.78 2.90
22 23 0.319297 CGAGGATCATCATGCGCTGA 60.319 55.000 9.73 10.58 38.53 4.26
23 24 0.599466 ACGAGGATCATCATGCGCTG 60.599 55.000 9.73 4.58 33.17 5.18
24 25 0.105593 AACGAGGATCATCATGCGCT 59.894 50.000 9.73 0.00 33.17 5.92
25 26 0.940126 AAACGAGGATCATCATGCGC 59.060 50.000 8.28 0.00 33.17 6.09
26 27 2.204237 TGAAACGAGGATCATCATGCG 58.796 47.619 8.28 0.00 33.17 4.73
27 28 2.032204 GCTGAAACGAGGATCATCATGC 60.032 50.000 8.28 0.00 33.17 4.06
28 29 3.464907 AGCTGAAACGAGGATCATCATG 58.535 45.455 8.28 0.00 33.17 3.07
29 30 3.834489 AGCTGAAACGAGGATCATCAT 57.166 42.857 8.28 0.00 33.17 2.45
30 31 3.264947 CAAGCTGAAACGAGGATCATCA 58.735 45.455 8.28 0.00 33.17 3.07
31 32 3.265791 ACAAGCTGAAACGAGGATCATC 58.734 45.455 0.00 0.00 33.17 2.92
32 33 3.340814 ACAAGCTGAAACGAGGATCAT 57.659 42.857 0.00 0.00 33.17 2.45
33 34 2.839486 ACAAGCTGAAACGAGGATCA 57.161 45.000 0.00 0.00 33.17 2.92
34 35 4.929808 TCTTTACAAGCTGAAACGAGGATC 59.070 41.667 0.00 0.00 0.00 3.36
35 36 4.894784 TCTTTACAAGCTGAAACGAGGAT 58.105 39.130 0.00 0.00 0.00 3.24
36 37 4.330944 TCTTTACAAGCTGAAACGAGGA 57.669 40.909 0.00 0.00 0.00 3.71
37 38 4.690748 TCATCTTTACAAGCTGAAACGAGG 59.309 41.667 0.00 0.00 31.29 4.63
38 39 5.845985 TCATCTTTACAAGCTGAAACGAG 57.154 39.130 0.00 0.00 31.29 4.18
39 40 5.758296 AGTTCATCTTTACAAGCTGAAACGA 59.242 36.000 4.73 0.00 43.00 3.85
40 41 5.990408 AGTTCATCTTTACAAGCTGAAACG 58.010 37.500 4.73 0.00 43.00 3.60
41 42 7.074502 CAGAGTTCATCTTTACAAGCTGAAAC 58.925 38.462 4.73 3.64 43.00 2.78
42 43 6.205464 CCAGAGTTCATCTTTACAAGCTGAAA 59.795 38.462 4.73 0.00 43.00 2.69
43 44 5.702670 CCAGAGTTCATCTTTACAAGCTGAA 59.297 40.000 0.00 0.00 40.26 3.02
44 45 5.012046 TCCAGAGTTCATCTTTACAAGCTGA 59.988 40.000 0.00 0.00 35.47 4.26
45 46 5.240891 TCCAGAGTTCATCTTTACAAGCTG 58.759 41.667 0.00 0.00 35.47 4.24
46 47 5.489792 TCCAGAGTTCATCTTTACAAGCT 57.510 39.130 0.00 0.00 35.47 3.74
47 48 6.597280 AGAATCCAGAGTTCATCTTTACAAGC 59.403 38.462 0.00 0.00 35.47 4.01
48 49 9.658799 TTAGAATCCAGAGTTCATCTTTACAAG 57.341 33.333 0.00 0.00 35.47 3.16
49 50 9.658799 CTTAGAATCCAGAGTTCATCTTTACAA 57.341 33.333 0.00 0.00 35.47 2.41
50 51 7.766278 GCTTAGAATCCAGAGTTCATCTTTACA 59.234 37.037 0.00 0.00 35.47 2.41
51 52 7.043059 CGCTTAGAATCCAGAGTTCATCTTTAC 60.043 40.741 0.00 0.00 35.47 2.01
52 53 6.980978 CGCTTAGAATCCAGAGTTCATCTTTA 59.019 38.462 0.00 0.00 35.47 1.85
53 54 5.814705 CGCTTAGAATCCAGAGTTCATCTTT 59.185 40.000 0.00 0.00 35.47 2.52
54 55 5.355596 CGCTTAGAATCCAGAGTTCATCTT 58.644 41.667 0.00 0.00 35.47 2.40
55 56 4.739137 GCGCTTAGAATCCAGAGTTCATCT 60.739 45.833 0.00 0.00 39.56 2.90
56 57 3.492756 GCGCTTAGAATCCAGAGTTCATC 59.507 47.826 0.00 0.00 0.00 2.92
57 58 3.118629 TGCGCTTAGAATCCAGAGTTCAT 60.119 43.478 9.73 0.00 0.00 2.57
58 59 2.233676 TGCGCTTAGAATCCAGAGTTCA 59.766 45.455 9.73 0.00 0.00 3.18
59 60 2.605366 GTGCGCTTAGAATCCAGAGTTC 59.395 50.000 9.73 0.00 0.00 3.01
60 61 2.028112 TGTGCGCTTAGAATCCAGAGTT 60.028 45.455 9.73 0.00 0.00 3.01
61 62 1.550524 TGTGCGCTTAGAATCCAGAGT 59.449 47.619 9.73 0.00 0.00 3.24
62 63 1.929836 GTGTGCGCTTAGAATCCAGAG 59.070 52.381 9.73 0.00 0.00 3.35
63 64 1.275010 TGTGTGCGCTTAGAATCCAGA 59.725 47.619 9.73 0.00 0.00 3.86
64 65 1.725641 TGTGTGCGCTTAGAATCCAG 58.274 50.000 9.73 0.00 0.00 3.86
65 66 2.076100 CTTGTGTGCGCTTAGAATCCA 58.924 47.619 9.73 0.00 0.00 3.41
66 67 2.094417 GTCTTGTGTGCGCTTAGAATCC 59.906 50.000 9.73 0.00 0.00 3.01
67 68 2.996621 AGTCTTGTGTGCGCTTAGAATC 59.003 45.455 9.73 0.00 0.00 2.52
68 69 2.738846 CAGTCTTGTGTGCGCTTAGAAT 59.261 45.455 9.73 0.44 0.00 2.40
69 70 2.135139 CAGTCTTGTGTGCGCTTAGAA 58.865 47.619 9.73 1.13 0.00 2.10
70 71 1.605457 CCAGTCTTGTGTGCGCTTAGA 60.605 52.381 9.73 1.05 0.00 2.10
71 72 0.792640 CCAGTCTTGTGTGCGCTTAG 59.207 55.000 9.73 0.00 0.00 2.18
72 73 1.227999 GCCAGTCTTGTGTGCGCTTA 61.228 55.000 9.73 0.00 0.00 3.09
73 74 2.546494 GCCAGTCTTGTGTGCGCTT 61.546 57.895 9.73 0.00 0.00 4.68
74 75 2.974698 GCCAGTCTTGTGTGCGCT 60.975 61.111 9.73 0.00 0.00 5.92
75 76 3.245948 CTGCCAGTCTTGTGTGCGC 62.246 63.158 0.00 0.00 0.00 6.09
76 77 1.563435 CTCTGCCAGTCTTGTGTGCG 61.563 60.000 0.00 0.00 0.00 5.34
77 78 0.533755 ACTCTGCCAGTCTTGTGTGC 60.534 55.000 0.00 0.00 0.00 4.57
78 79 1.959042 AACTCTGCCAGTCTTGTGTG 58.041 50.000 0.00 0.00 32.30 3.82
79 80 3.495100 CCTTAACTCTGCCAGTCTTGTGT 60.495 47.826 0.00 0.00 32.30 3.72
80 81 3.070018 CCTTAACTCTGCCAGTCTTGTG 58.930 50.000 0.00 0.00 32.30 3.33
81 82 2.551071 GCCTTAACTCTGCCAGTCTTGT 60.551 50.000 0.00 0.00 32.30 3.16
82 83 2.079925 GCCTTAACTCTGCCAGTCTTG 58.920 52.381 0.00 0.00 32.30 3.02
83 84 1.003696 GGCCTTAACTCTGCCAGTCTT 59.996 52.381 0.00 0.00 44.70 3.01
84 85 0.615850 GGCCTTAACTCTGCCAGTCT 59.384 55.000 0.00 0.00 44.70 3.24
85 86 3.160872 GGCCTTAACTCTGCCAGTC 57.839 57.895 0.00 0.00 44.70 3.51
89 90 0.038310 AACAGGGCCTTAACTCTGCC 59.962 55.000 1.32 0.00 44.59 4.85
90 91 1.541588 CAAACAGGGCCTTAACTCTGC 59.458 52.381 1.32 0.00 0.00 4.26
91 92 2.162681 CCAAACAGGGCCTTAACTCTG 58.837 52.381 1.32 2.28 0.00 3.35
92 93 1.780919 ACCAAACAGGGCCTTAACTCT 59.219 47.619 1.32 0.00 43.89 3.24
93 94 2.287977 ACCAAACAGGGCCTTAACTC 57.712 50.000 1.32 0.00 43.89 3.01
94 95 2.091555 TGAACCAAACAGGGCCTTAACT 60.092 45.455 1.32 0.00 43.89 2.24
95 96 2.296190 CTGAACCAAACAGGGCCTTAAC 59.704 50.000 1.32 0.00 43.89 2.01
96 97 2.593026 CTGAACCAAACAGGGCCTTAA 58.407 47.619 1.32 0.00 43.89 1.85
97 98 1.821666 GCTGAACCAAACAGGGCCTTA 60.822 52.381 1.32 0.00 43.89 2.69
98 99 1.115326 GCTGAACCAAACAGGGCCTT 61.115 55.000 1.32 0.00 43.89 4.35
99 100 1.531602 GCTGAACCAAACAGGGCCT 60.532 57.895 0.00 0.00 43.89 5.19
100 101 1.115326 AAGCTGAACCAAACAGGGCC 61.115 55.000 0.00 0.00 43.89 5.80
101 102 0.752658 AAAGCTGAACCAAACAGGGC 59.247 50.000 0.00 0.00 43.89 5.19
102 103 4.280677 TGATAAAAGCTGAACCAAACAGGG 59.719 41.667 0.00 0.00 43.89 4.45
103 104 5.452078 TGATAAAAGCTGAACCAAACAGG 57.548 39.130 0.00 0.00 45.67 4.00
104 105 5.399301 CGTTGATAAAAGCTGAACCAAACAG 59.601 40.000 0.00 0.00 38.27 3.16
105 106 5.277825 CGTTGATAAAAGCTGAACCAAACA 58.722 37.500 0.00 0.00 0.00 2.83
106 107 4.679654 CCGTTGATAAAAGCTGAACCAAAC 59.320 41.667 0.00 0.00 0.00 2.93
107 108 4.580995 TCCGTTGATAAAAGCTGAACCAAA 59.419 37.500 0.00 0.00 0.00 3.28
108 109 4.138290 TCCGTTGATAAAAGCTGAACCAA 58.862 39.130 0.00 0.00 0.00 3.67
109 110 3.745799 TCCGTTGATAAAAGCTGAACCA 58.254 40.909 0.00 0.00 0.00 3.67
110 111 4.965119 ATCCGTTGATAAAAGCTGAACC 57.035 40.909 0.00 0.00 0.00 3.62
111 112 5.508224 CGAAATCCGTTGATAAAAGCTGAAC 59.492 40.000 0.00 0.00 0.00 3.18
112 113 5.627172 CGAAATCCGTTGATAAAAGCTGAA 58.373 37.500 0.00 0.00 0.00 3.02
113 114 4.436852 GCGAAATCCGTTGATAAAAGCTGA 60.437 41.667 0.00 0.00 41.15 4.26
114 115 3.786048 GCGAAATCCGTTGATAAAAGCTG 59.214 43.478 0.00 0.00 41.15 4.24
115 116 3.689649 AGCGAAATCCGTTGATAAAAGCT 59.310 39.130 0.00 0.00 41.15 3.74
116 117 4.016113 AGCGAAATCCGTTGATAAAAGC 57.984 40.909 0.00 0.00 41.15 3.51
125 126 2.870372 GCAGCAGCGAAATCCGTT 59.130 55.556 0.00 0.00 41.15 4.44
139 140 1.003116 GGTTCAGATTATGCTGCGCAG 60.003 52.381 32.83 32.83 43.65 5.18
140 141 1.016627 GGTTCAGATTATGCTGCGCA 58.983 50.000 10.98 10.98 44.86 6.09
141 142 1.016627 TGGTTCAGATTATGCTGCGC 58.983 50.000 0.00 0.00 35.86 6.09
142 143 3.488047 CCTTTGGTTCAGATTATGCTGCG 60.488 47.826 0.00 0.00 35.86 5.18
143 144 3.181483 CCCTTTGGTTCAGATTATGCTGC 60.181 47.826 0.00 0.00 35.86 5.25
144 145 3.181483 GCCCTTTGGTTCAGATTATGCTG 60.181 47.826 0.00 0.00 37.24 4.41
145 146 3.026694 GCCCTTTGGTTCAGATTATGCT 58.973 45.455 0.00 0.00 0.00 3.79
146 147 2.223572 CGCCCTTTGGTTCAGATTATGC 60.224 50.000 0.00 0.00 0.00 3.14
147 148 3.278574 TCGCCCTTTGGTTCAGATTATG 58.721 45.455 0.00 0.00 0.00 1.90
148 149 3.644966 TCGCCCTTTGGTTCAGATTAT 57.355 42.857 0.00 0.00 0.00 1.28
149 150 3.078837 GTTCGCCCTTTGGTTCAGATTA 58.921 45.455 0.00 0.00 0.00 1.75
150 151 1.886542 GTTCGCCCTTTGGTTCAGATT 59.113 47.619 0.00 0.00 0.00 2.40
151 152 1.534729 GTTCGCCCTTTGGTTCAGAT 58.465 50.000 0.00 0.00 0.00 2.90
152 153 0.536460 GGTTCGCCCTTTGGTTCAGA 60.536 55.000 0.00 0.00 0.00 3.27
153 154 1.956802 GGTTCGCCCTTTGGTTCAG 59.043 57.895 0.00 0.00 0.00 3.02
154 155 4.167597 GGTTCGCCCTTTGGTTCA 57.832 55.556 0.00 0.00 0.00 3.18
164 165 2.115291 GGATTCTGCTGGGTTCGCC 61.115 63.158 0.00 0.00 0.00 5.54
165 166 2.464459 CGGATTCTGCTGGGTTCGC 61.464 63.158 0.00 0.00 0.00 4.70
166 167 0.179073 ATCGGATTCTGCTGGGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
167 168 1.943340 GAATCGGATTCTGCTGGGTTC 59.057 52.381 20.70 0.00 36.37 3.62
168 169 1.408822 GGAATCGGATTCTGCTGGGTT 60.409 52.381 25.29 0.00 39.24 4.11
169 170 0.181350 GGAATCGGATTCTGCTGGGT 59.819 55.000 25.29 0.00 39.24 4.51
170 171 0.181114 TGGAATCGGATTCTGCTGGG 59.819 55.000 25.29 0.00 39.24 4.45
171 172 1.139654 TCTGGAATCGGATTCTGCTGG 59.860 52.381 25.29 13.47 39.24 4.85
172 173 2.609427 TCTGGAATCGGATTCTGCTG 57.391 50.000 25.29 15.51 39.24 4.41
173 174 3.634397 TTTCTGGAATCGGATTCTGCT 57.366 42.857 25.29 0.00 39.24 4.24
174 175 4.553547 CGAATTTCTGGAATCGGATTCTGC 60.554 45.833 25.29 13.44 39.24 4.26
175 176 4.553547 GCGAATTTCTGGAATCGGATTCTG 60.554 45.833 25.29 19.01 39.24 3.02
176 177 3.561725 GCGAATTTCTGGAATCGGATTCT 59.438 43.478 25.29 8.12 39.24 2.40
177 178 3.561725 AGCGAATTTCTGGAATCGGATTC 59.438 43.478 20.01 20.01 38.55 2.52
178 179 3.313526 CAGCGAATTTCTGGAATCGGATT 59.686 43.478 2.19 2.19 0.00 3.01
179 180 2.874701 CAGCGAATTTCTGGAATCGGAT 59.125 45.455 7.95 0.00 0.00 4.18
180 181 2.279741 CAGCGAATTTCTGGAATCGGA 58.720 47.619 7.95 0.00 0.00 4.55
181 182 1.268234 GCAGCGAATTTCTGGAATCGG 60.268 52.381 9.70 0.00 32.41 4.18
182 183 1.268234 GGCAGCGAATTTCTGGAATCG 60.268 52.381 9.70 3.02 32.41 3.34
183 184 1.745087 TGGCAGCGAATTTCTGGAATC 59.255 47.619 9.70 0.00 32.41 2.52
184 185 1.838112 TGGCAGCGAATTTCTGGAAT 58.162 45.000 9.70 0.00 32.41 3.01
185 186 1.614996 TTGGCAGCGAATTTCTGGAA 58.385 45.000 9.70 0.00 32.41 3.53
186 187 1.614996 TTTGGCAGCGAATTTCTGGA 58.385 45.000 9.70 0.00 32.41 3.86
187 188 2.437200 TTTTGGCAGCGAATTTCTGG 57.563 45.000 9.70 0.00 32.41 3.86
188 189 3.611113 CAGATTTTGGCAGCGAATTTCTG 59.389 43.478 12.45 12.45 34.79 3.02
189 190 3.507233 TCAGATTTTGGCAGCGAATTTCT 59.493 39.130 0.00 0.00 0.00 2.52
190 191 3.836949 TCAGATTTTGGCAGCGAATTTC 58.163 40.909 0.00 0.00 0.00 2.17
191 192 3.940209 TCAGATTTTGGCAGCGAATTT 57.060 38.095 0.00 0.00 0.00 1.82
192 193 3.578688 GTTCAGATTTTGGCAGCGAATT 58.421 40.909 0.00 0.00 0.00 2.17
193 194 2.094545 GGTTCAGATTTTGGCAGCGAAT 60.095 45.455 0.00 0.00 0.00 3.34
194 195 1.269448 GGTTCAGATTTTGGCAGCGAA 59.731 47.619 0.00 0.00 0.00 4.70
195 196 0.881118 GGTTCAGATTTTGGCAGCGA 59.119 50.000 0.00 0.00 0.00 4.93
196 197 0.597568 TGGTTCAGATTTTGGCAGCG 59.402 50.000 0.00 0.00 0.00 5.18
197 198 2.818130 TTGGTTCAGATTTTGGCAGC 57.182 45.000 0.00 0.00 0.00 5.25
198 199 3.495753 GCTTTTGGTTCAGATTTTGGCAG 59.504 43.478 0.00 0.00 0.00 4.85
199 200 3.465871 GCTTTTGGTTCAGATTTTGGCA 58.534 40.909 0.00 0.00 0.00 4.92
200 201 2.476241 CGCTTTTGGTTCAGATTTTGGC 59.524 45.455 0.00 0.00 0.00 4.52
201 202 3.059166 CCGCTTTTGGTTCAGATTTTGG 58.941 45.455 0.00 0.00 0.00 3.28
202 203 3.976169 TCCGCTTTTGGTTCAGATTTTG 58.024 40.909 0.00 0.00 0.00 2.44
203 204 4.620982 CTTCCGCTTTTGGTTCAGATTTT 58.379 39.130 0.00 0.00 0.00 1.82
204 205 3.552890 GCTTCCGCTTTTGGTTCAGATTT 60.553 43.478 0.00 0.00 0.00 2.17
205 206 2.029918 GCTTCCGCTTTTGGTTCAGATT 60.030 45.455 0.00 0.00 0.00 2.40
206 207 1.541588 GCTTCCGCTTTTGGTTCAGAT 59.458 47.619 0.00 0.00 0.00 2.90
207 208 0.951558 GCTTCCGCTTTTGGTTCAGA 59.048 50.000 0.00 0.00 0.00 3.27
208 209 0.667993 TGCTTCCGCTTTTGGTTCAG 59.332 50.000 0.00 0.00 36.97 3.02
209 210 0.667993 CTGCTTCCGCTTTTGGTTCA 59.332 50.000 0.00 0.00 36.97 3.18
210 211 0.664466 GCTGCTTCCGCTTTTGGTTC 60.664 55.000 0.00 0.00 36.97 3.62
211 212 1.363807 GCTGCTTCCGCTTTTGGTT 59.636 52.632 0.00 0.00 36.97 3.67
212 213 2.564721 GGCTGCTTCCGCTTTTGGT 61.565 57.895 0.00 0.00 36.97 3.67
213 214 0.960364 TAGGCTGCTTCCGCTTTTGG 60.960 55.000 0.00 0.00 36.97 3.28
214 215 0.449388 CTAGGCTGCTTCCGCTTTTG 59.551 55.000 0.00 0.00 36.97 2.44
215 216 0.678048 CCTAGGCTGCTTCCGCTTTT 60.678 55.000 0.00 0.00 36.97 2.27
216 217 1.078143 CCTAGGCTGCTTCCGCTTT 60.078 57.895 0.00 0.00 36.97 3.51
217 218 1.990060 TCCTAGGCTGCTTCCGCTT 60.990 57.895 2.96 0.00 36.97 4.68
218 219 2.364317 TCCTAGGCTGCTTCCGCT 60.364 61.111 2.96 0.00 36.97 5.52
219 220 2.202946 GTCCTAGGCTGCTTCCGC 60.203 66.667 2.96 0.00 0.00 5.54
220 221 2.105128 CGTCCTAGGCTGCTTCCG 59.895 66.667 2.96 0.00 0.00 4.30
221 222 1.153549 CACGTCCTAGGCTGCTTCC 60.154 63.158 2.96 0.00 0.00 3.46
222 223 1.811679 GCACGTCCTAGGCTGCTTC 60.812 63.158 2.96 0.00 0.00 3.86
223 224 1.831652 AAGCACGTCCTAGGCTGCTT 61.832 55.000 24.61 24.61 43.55 3.91
224 225 1.831652 AAAGCACGTCCTAGGCTGCT 61.832 55.000 18.01 18.01 41.83 4.24
225 226 0.955919 AAAAGCACGTCCTAGGCTGC 60.956 55.000 14.83 14.83 38.04 5.25
226 227 1.079503 GAAAAGCACGTCCTAGGCTG 58.920 55.000 2.96 0.65 38.04 4.85
227 228 0.685097 TGAAAAGCACGTCCTAGGCT 59.315 50.000 2.96 0.00 40.14 4.58
228 229 1.519408 TTGAAAAGCACGTCCTAGGC 58.481 50.000 2.96 0.00 0.00 3.93
229 230 4.455877 AGATTTTGAAAAGCACGTCCTAGG 59.544 41.667 8.71 0.82 0.00 3.02
230 231 5.179368 TCAGATTTTGAAAAGCACGTCCTAG 59.821 40.000 8.71 0.00 31.34 3.02
231 232 5.060506 TCAGATTTTGAAAAGCACGTCCTA 58.939 37.500 8.71 0.00 31.34 2.94
232 233 3.882888 TCAGATTTTGAAAAGCACGTCCT 59.117 39.130 8.71 0.00 31.34 3.85
233 234 4.223320 TCAGATTTTGAAAAGCACGTCC 57.777 40.909 8.71 0.00 31.34 4.79
234 235 6.397894 CGAAATCAGATTTTGAAAAGCACGTC 60.398 38.462 15.82 0.00 39.77 4.34
235 236 5.399301 CGAAATCAGATTTTGAAAAGCACGT 59.601 36.000 15.82 0.00 39.77 4.49
236 237 5.663773 GCGAAATCAGATTTTGAAAAGCACG 60.664 40.000 22.82 13.19 39.77 5.34
237 238 5.403466 AGCGAAATCAGATTTTGAAAAGCAC 59.597 36.000 22.82 6.85 39.77 4.40
238 239 5.403166 CAGCGAAATCAGATTTTGAAAAGCA 59.597 36.000 22.82 0.00 39.77 3.91
239 240 5.667156 GCAGCGAAATCAGATTTTGAAAAGC 60.667 40.000 22.82 16.08 39.77 3.51
240 241 5.442390 CGCAGCGAAATCAGATTTTGAAAAG 60.442 40.000 22.82 11.62 39.77 2.27
241 242 4.382457 CGCAGCGAAATCAGATTTTGAAAA 59.618 37.500 22.82 0.00 39.77 2.29
242 243 3.913763 CGCAGCGAAATCAGATTTTGAAA 59.086 39.130 22.82 0.00 39.77 2.69
243 244 3.491356 CGCAGCGAAATCAGATTTTGAA 58.509 40.909 22.82 0.00 39.77 2.69
244 245 2.159531 CCGCAGCGAAATCAGATTTTGA 60.160 45.455 22.82 0.00 40.85 2.69
245 246 2.179589 CCGCAGCGAAATCAGATTTTG 58.820 47.619 18.75 16.37 36.84 2.44
246 247 1.133025 CCCGCAGCGAAATCAGATTTT 59.867 47.619 18.75 0.00 31.47 1.82
247 248 0.734889 CCCGCAGCGAAATCAGATTT 59.265 50.000 18.75 8.20 34.64 2.17
248 249 1.718757 GCCCGCAGCGAAATCAGATT 61.719 55.000 18.75 0.00 0.00 2.40
249 250 2.182842 GCCCGCAGCGAAATCAGAT 61.183 57.895 18.75 0.00 0.00 2.90
250 251 2.819595 GCCCGCAGCGAAATCAGA 60.820 61.111 18.75 0.00 0.00 3.27
251 252 3.880846 GGCCCGCAGCGAAATCAG 61.881 66.667 18.75 0.00 45.17 2.90
252 253 4.713735 TGGCCCGCAGCGAAATCA 62.714 61.111 18.75 6.18 45.17 2.57
253 254 2.485188 TTTTGGCCCGCAGCGAAATC 62.485 55.000 18.75 3.37 46.76 2.17
254 255 1.887344 ATTTTGGCCCGCAGCGAAAT 61.887 50.000 18.75 10.95 46.76 2.17
255 256 2.485188 GATTTTGGCCCGCAGCGAAA 62.485 55.000 18.75 8.83 46.03 3.46
256 257 2.988684 ATTTTGGCCCGCAGCGAA 60.989 55.556 18.75 0.75 45.17 4.70
257 258 2.529454 TAGATTTTGGCCCGCAGCGA 62.529 55.000 18.75 0.00 45.17 4.93
258 259 1.653094 TTAGATTTTGGCCCGCAGCG 61.653 55.000 8.18 8.18 45.17 5.18
259 260 0.530288 TTTAGATTTTGGCCCGCAGC 59.470 50.000 0.00 0.00 42.60 5.25
260 261 3.311486 TTTTTAGATTTTGGCCCGCAG 57.689 42.857 0.00 0.00 0.00 5.18
278 279 9.930693 TTTGACAAACCAGTTAATACAGTTTTT 57.069 25.926 0.00 0.00 33.40 1.94
280 281 9.528018 CATTTGACAAACCAGTTAATACAGTTT 57.472 29.630 1.94 0.00 34.97 2.66
281 282 8.908903 TCATTTGACAAACCAGTTAATACAGTT 58.091 29.630 1.94 0.00 0.00 3.16
282 283 8.349983 GTCATTTGACAAACCAGTTAATACAGT 58.650 33.333 1.94 0.00 44.18 3.55
283 284 7.807907 GGTCATTTGACAAACCAGTTAATACAG 59.192 37.037 12.43 0.00 46.47 2.74
284 285 7.504238 AGGTCATTTGACAAACCAGTTAATACA 59.496 33.333 12.43 0.00 46.47 2.29
285 286 7.882179 AGGTCATTTGACAAACCAGTTAATAC 58.118 34.615 12.43 0.00 46.47 1.89
286 287 9.005777 GTAGGTCATTTGACAAACCAGTTAATA 57.994 33.333 12.43 0.00 46.47 0.98
287 288 6.976934 AGGTCATTTGACAAACCAGTTAAT 57.023 33.333 12.43 0.00 46.47 1.40
288 289 6.829298 TGTAGGTCATTTGACAAACCAGTTAA 59.171 34.615 12.43 0.00 46.47 2.01
289 290 6.358178 TGTAGGTCATTTGACAAACCAGTTA 58.642 36.000 12.43 0.00 46.47 2.24
290 291 5.197451 TGTAGGTCATTTGACAAACCAGTT 58.803 37.500 12.43 0.00 46.47 3.16
291 292 4.787551 TGTAGGTCATTTGACAAACCAGT 58.212 39.130 12.43 0.00 46.47 4.00
292 293 5.707298 AGATGTAGGTCATTTGACAAACCAG 59.293 40.000 12.43 0.00 46.47 4.00
293 294 5.630121 AGATGTAGGTCATTTGACAAACCA 58.370 37.500 12.43 4.12 46.47 3.67
294 295 6.575162 AAGATGTAGGTCATTTGACAAACC 57.425 37.500 12.43 0.82 46.47 3.27
295 296 8.871686 AAAAAGATGTAGGTCATTTGACAAAC 57.128 30.769 12.43 9.59 46.47 2.93
296 297 8.690884 TGAAAAAGATGTAGGTCATTTGACAAA 58.309 29.630 12.43 2.48 46.47 2.83
297 298 8.134895 GTGAAAAAGATGTAGGTCATTTGACAA 58.865 33.333 12.43 0.00 46.47 3.18
298 299 7.284261 TGTGAAAAAGATGTAGGTCATTTGACA 59.716 33.333 12.43 0.00 46.47 3.58
299 300 7.648142 TGTGAAAAAGATGTAGGTCATTTGAC 58.352 34.615 1.99 1.99 44.04 3.18
300 301 7.815840 TGTGAAAAAGATGTAGGTCATTTGA 57.184 32.000 0.00 0.00 36.83 2.69
301 302 8.298854 TGATGTGAAAAAGATGTAGGTCATTTG 58.701 33.333 0.00 0.00 36.83 2.32
302 303 8.408043 TGATGTGAAAAAGATGTAGGTCATTT 57.592 30.769 0.00 0.00 36.83 2.32
303 304 7.884877 TCTGATGTGAAAAAGATGTAGGTCATT 59.115 33.333 0.00 0.00 36.83 2.57
304 305 7.397221 TCTGATGTGAAAAAGATGTAGGTCAT 58.603 34.615 0.00 0.00 39.77 3.06
305 306 6.768483 TCTGATGTGAAAAAGATGTAGGTCA 58.232 36.000 0.00 0.00 0.00 4.02
306 307 7.856145 ATCTGATGTGAAAAAGATGTAGGTC 57.144 36.000 0.00 0.00 0.00 3.85
307 308 8.641498 AAATCTGATGTGAAAAAGATGTAGGT 57.359 30.769 0.00 0.00 29.93 3.08
308 309 9.918630 AAAAATCTGATGTGAAAAAGATGTAGG 57.081 29.630 0.00 0.00 29.93 3.18
311 312 9.252962 GTGAAAAATCTGATGTGAAAAAGATGT 57.747 29.630 0.00 0.00 29.93 3.06
312 313 9.251792 TGTGAAAAATCTGATGTGAAAAAGATG 57.748 29.630 0.00 0.00 29.93 2.90
313 314 9.472361 CTGTGAAAAATCTGATGTGAAAAAGAT 57.528 29.630 0.00 0.00 0.00 2.40
314 315 7.436080 GCTGTGAAAAATCTGATGTGAAAAAGA 59.564 33.333 0.00 0.00 0.00 2.52
315 316 7.437267 AGCTGTGAAAAATCTGATGTGAAAAAG 59.563 33.333 0.00 0.00 0.00 2.27
316 317 7.223193 CAGCTGTGAAAAATCTGATGTGAAAAA 59.777 33.333 5.25 0.00 0.00 1.94
317 318 6.698329 CAGCTGTGAAAAATCTGATGTGAAAA 59.302 34.615 5.25 0.00 0.00 2.29
318 319 6.183360 ACAGCTGTGAAAAATCTGATGTGAAA 60.183 34.615 20.97 0.00 32.73 2.69
319 320 5.300034 ACAGCTGTGAAAAATCTGATGTGAA 59.700 36.000 20.97 0.00 32.73 3.18
320 321 4.823442 ACAGCTGTGAAAAATCTGATGTGA 59.177 37.500 20.97 0.00 32.73 3.58
321 322 5.117355 ACAGCTGTGAAAAATCTGATGTG 57.883 39.130 20.97 0.00 32.73 3.21
322 323 5.779529 AACAGCTGTGAAAAATCTGATGT 57.220 34.783 22.49 0.00 34.67 3.06
323 324 7.473027 AAAAACAGCTGTGAAAAATCTGATG 57.527 32.000 22.49 0.00 0.00 3.07
344 345 5.291614 GCTGTCAAAAATCTGCTGTGAAAAA 59.708 36.000 0.00 0.00 0.00 1.94
345 346 4.805192 GCTGTCAAAAATCTGCTGTGAAAA 59.195 37.500 0.00 0.00 0.00 2.29
346 347 4.098349 AGCTGTCAAAAATCTGCTGTGAAA 59.902 37.500 0.00 0.00 37.44 2.69
347 348 3.633525 AGCTGTCAAAAATCTGCTGTGAA 59.366 39.130 0.00 0.00 37.44 3.18
348 349 3.216800 AGCTGTCAAAAATCTGCTGTGA 58.783 40.909 0.00 0.00 37.44 3.58
349 350 3.637998 AGCTGTCAAAAATCTGCTGTG 57.362 42.857 0.00 0.00 37.44 3.66
350 351 4.392940 AGTAGCTGTCAAAAATCTGCTGT 58.607 39.130 0.00 0.00 38.77 4.40
351 352 5.368256 AAGTAGCTGTCAAAAATCTGCTG 57.632 39.130 0.00 0.00 38.77 4.41
352 353 6.396829 AAAAGTAGCTGTCAAAAATCTGCT 57.603 33.333 0.00 0.00 40.71 4.24
353 354 7.584987 TCTAAAAGTAGCTGTCAAAAATCTGC 58.415 34.615 0.00 0.00 0.00 4.26
354 355 9.950680 TTTCTAAAAGTAGCTGTCAAAAATCTG 57.049 29.630 0.00 0.00 0.00 2.90
357 358 9.914131 GGATTTCTAAAAGTAGCTGTCAAAAAT 57.086 29.630 0.00 0.00 0.00 1.82
358 359 8.908903 TGGATTTCTAAAAGTAGCTGTCAAAAA 58.091 29.630 0.00 0.00 0.00 1.94
359 360 8.349983 GTGGATTTCTAAAAGTAGCTGTCAAAA 58.650 33.333 0.00 0.00 0.00 2.44
360 361 7.500892 TGTGGATTTCTAAAAGTAGCTGTCAAA 59.499 33.333 0.00 0.00 0.00 2.69
361 362 6.995686 TGTGGATTTCTAAAAGTAGCTGTCAA 59.004 34.615 0.00 0.00 0.00 3.18
362 363 6.530120 TGTGGATTTCTAAAAGTAGCTGTCA 58.470 36.000 0.00 0.00 0.00 3.58
363 364 6.402658 GCTGTGGATTTCTAAAAGTAGCTGTC 60.403 42.308 0.00 0.00 0.00 3.51
364 365 5.412904 GCTGTGGATTTCTAAAAGTAGCTGT 59.587 40.000 0.00 0.00 0.00 4.40
365 366 5.163713 GGCTGTGGATTTCTAAAAGTAGCTG 60.164 44.000 0.00 0.00 0.00 4.24
366 367 4.944317 GGCTGTGGATTTCTAAAAGTAGCT 59.056 41.667 0.00 0.00 0.00 3.32
367 368 4.201822 CGGCTGTGGATTTCTAAAAGTAGC 60.202 45.833 0.00 0.00 0.00 3.58
368 369 5.175859 TCGGCTGTGGATTTCTAAAAGTAG 58.824 41.667 0.00 0.00 0.00 2.57
369 370 5.155278 TCGGCTGTGGATTTCTAAAAGTA 57.845 39.130 0.00 0.00 0.00 2.24
370 371 4.015872 TCGGCTGTGGATTTCTAAAAGT 57.984 40.909 0.00 0.00 0.00 2.66
371 372 4.379499 GGTTCGGCTGTGGATTTCTAAAAG 60.379 45.833 0.00 0.00 0.00 2.27
372 373 3.504520 GGTTCGGCTGTGGATTTCTAAAA 59.495 43.478 0.00 0.00 0.00 1.52
373 374 3.078837 GGTTCGGCTGTGGATTTCTAAA 58.921 45.455 0.00 0.00 0.00 1.85
374 375 2.039216 TGGTTCGGCTGTGGATTTCTAA 59.961 45.455 0.00 0.00 0.00 2.10
375 376 1.626321 TGGTTCGGCTGTGGATTTCTA 59.374 47.619 0.00 0.00 0.00 2.10
376 377 0.400213 TGGTTCGGCTGTGGATTTCT 59.600 50.000 0.00 0.00 0.00 2.52
377 378 1.243902 TTGGTTCGGCTGTGGATTTC 58.756 50.000 0.00 0.00 0.00 2.17
378 379 1.339929 GTTTGGTTCGGCTGTGGATTT 59.660 47.619 0.00 0.00 0.00 2.17
379 380 0.958822 GTTTGGTTCGGCTGTGGATT 59.041 50.000 0.00 0.00 0.00 3.01
380 381 0.179004 TGTTTGGTTCGGCTGTGGAT 60.179 50.000 0.00 0.00 0.00 3.41
381 382 0.817634 CTGTTTGGTTCGGCTGTGGA 60.818 55.000 0.00 0.00 0.00 4.02
382 383 1.654220 CTGTTTGGTTCGGCTGTGG 59.346 57.895 0.00 0.00 0.00 4.17
383 384 1.654220 CCTGTTTGGTTCGGCTGTG 59.346 57.895 0.00 0.00 0.00 3.66
384 385 1.528309 CCCTGTTTGGTTCGGCTGT 60.528 57.895 0.00 0.00 0.00 4.40
385 386 2.919494 GCCCTGTTTGGTTCGGCTG 61.919 63.158 0.00 0.00 36.65 4.85
386 387 2.597510 GCCCTGTTTGGTTCGGCT 60.598 61.111 0.00 0.00 36.65 5.52
387 388 2.757980 TAGGCCCTGTTTGGTTCGGC 62.758 60.000 0.00 0.00 38.96 5.54
388 389 0.250989 TTAGGCCCTGTTTGGTTCGG 60.251 55.000 0.00 0.00 0.00 4.30
389 390 1.165270 CTTAGGCCCTGTTTGGTTCG 58.835 55.000 0.00 0.00 0.00 3.95
390 391 2.579410 TCTTAGGCCCTGTTTGGTTC 57.421 50.000 0.00 0.00 0.00 3.62
391 392 3.165071 CAATCTTAGGCCCTGTTTGGTT 58.835 45.455 0.00 0.00 0.00 3.67
392 393 2.378547 TCAATCTTAGGCCCTGTTTGGT 59.621 45.455 0.00 0.00 0.00 3.67
393 394 3.085952 TCAATCTTAGGCCCTGTTTGG 57.914 47.619 0.00 0.00 0.00 3.28
394 395 6.773976 TTTATCAATCTTAGGCCCTGTTTG 57.226 37.500 0.00 1.99 0.00 2.93
395 396 7.790782 TTTTTATCAATCTTAGGCCCTGTTT 57.209 32.000 0.00 0.00 0.00 2.83
433 434 4.572389 AGCCTACGCAAAATCTATGTGAAG 59.428 41.667 0.00 0.00 37.52 3.02
440 441 3.054655 AGGGAAAGCCTACGCAAAATCTA 60.055 43.478 0.00 0.00 37.52 1.98
453 454 2.418884 CGAGAAGAACCTAGGGAAAGCC 60.419 54.545 14.81 0.00 0.00 4.35
454 455 2.894902 CGAGAAGAACCTAGGGAAAGC 58.105 52.381 14.81 0.00 0.00 3.51
468 469 3.583806 GGATGGATATGTCAGCGAGAAG 58.416 50.000 0.00 0.00 0.00 2.85
481 482 3.304458 CGAACGAAGATGACGGATGGATA 60.304 47.826 0.00 0.00 34.93 2.59
485 486 1.909376 ACGAACGAAGATGACGGATG 58.091 50.000 0.14 0.00 34.93 3.51
487 488 2.427232 AAACGAACGAAGATGACGGA 57.573 45.000 0.14 0.00 34.93 4.69
505 506 5.301835 TCTGGAAAAATCATGGCCAAAAA 57.698 34.783 10.96 0.00 0.00 1.94
510 511 5.490159 TGAAAATCTGGAAAAATCATGGCC 58.510 37.500 0.00 0.00 0.00 5.36
511 512 7.046033 AGATGAAAATCTGGAAAAATCATGGC 58.954 34.615 0.00 0.00 0.00 4.40
544 546 4.178545 GTAGCGAACTACCCAGTGTTTA 57.821 45.455 0.00 0.00 42.60 2.01
546 548 2.738013 GTAGCGAACTACCCAGTGTT 57.262 50.000 0.00 0.00 42.60 3.32
554 556 1.677052 CAGGGAGAGGTAGCGAACTAC 59.323 57.143 0.00 0.00 46.85 2.73
555 557 2.022754 GCAGGGAGAGGTAGCGAACTA 61.023 57.143 0.00 0.00 0.00 2.24
556 558 1.324005 GCAGGGAGAGGTAGCGAACT 61.324 60.000 0.00 0.00 0.00 3.01
557 559 1.142097 GCAGGGAGAGGTAGCGAAC 59.858 63.158 0.00 0.00 0.00 3.95
558 560 0.687757 ATGCAGGGAGAGGTAGCGAA 60.688 55.000 0.00 0.00 0.00 4.70
559 561 0.185175 TATGCAGGGAGAGGTAGCGA 59.815 55.000 0.00 0.00 0.00 4.93
560 562 1.067283 CATATGCAGGGAGAGGTAGCG 60.067 57.143 0.00 0.00 0.00 4.26
561 563 1.277557 CCATATGCAGGGAGAGGTAGC 59.722 57.143 0.00 0.00 0.00 3.58
571 573 0.250640 GCCTCAGACCCATATGCAGG 60.251 60.000 0.00 0.00 0.00 4.85
572 574 0.602106 CGCCTCAGACCCATATGCAG 60.602 60.000 0.00 0.00 0.00 4.41
573 575 1.337384 ACGCCTCAGACCCATATGCA 61.337 55.000 0.00 0.00 0.00 3.96
574 576 0.679505 TACGCCTCAGACCCATATGC 59.320 55.000 0.00 0.00 0.00 3.14
575 577 3.393800 CTTTACGCCTCAGACCCATATG 58.606 50.000 0.00 0.00 0.00 1.78
576 578 2.368875 CCTTTACGCCTCAGACCCATAT 59.631 50.000 0.00 0.00 0.00 1.78
577 579 1.760613 CCTTTACGCCTCAGACCCATA 59.239 52.381 0.00 0.00 0.00 2.74
578 580 0.541863 CCTTTACGCCTCAGACCCAT 59.458 55.000 0.00 0.00 0.00 4.00
579 581 0.834687 ACCTTTACGCCTCAGACCCA 60.835 55.000 0.00 0.00 0.00 4.51
599 601 5.176958 CGCTGTAGCTTGTACTTAACAGTTT 59.823 40.000 9.97 0.00 37.31 2.66
606 611 2.821378 TCCACGCTGTAGCTTGTACTTA 59.179 45.455 9.14 0.00 38.46 2.24
619 627 6.893958 GTGGATATATATTCTTCCACGCTG 57.106 41.667 18.67 0.00 46.12 5.18
626 634 9.593134 CTGTAGGCTTGTGGATATATATTCTTC 57.407 37.037 2.65 0.00 0.00 2.87
628 636 7.680310 ACCTGTAGGCTTGTGGATATATATTCT 59.320 37.037 2.65 0.00 39.32 2.40
635 643 3.904339 CCTACCTGTAGGCTTGTGGATAT 59.096 47.826 10.29 0.00 45.36 1.63
636 644 3.305720 CCTACCTGTAGGCTTGTGGATA 58.694 50.000 10.29 0.00 45.36 2.59
637 645 2.119495 CCTACCTGTAGGCTTGTGGAT 58.881 52.381 10.29 0.00 45.36 3.41
654 664 7.526142 AAAAGATCTGCATACGAGATACCTA 57.474 36.000 0.00 0.00 29.97 3.08
673 686 9.712305 TTTATAATTTTTGGATCGGCAAAAAGA 57.288 25.926 20.15 14.16 41.57 2.52
707 720 1.675310 CCTGCAAACATGCTCCGGA 60.675 57.895 2.93 2.93 35.49 5.14
709 722 1.503542 GACCTGCAAACATGCTCCG 59.496 57.895 2.22 0.00 35.49 4.63
710 723 0.610232 AGGACCTGCAAACATGCTCC 60.610 55.000 0.00 1.37 35.49 4.70
733 746 6.315393 TGTTCTTCGGATCTTTATAAGTTGCC 59.685 38.462 0.00 0.00 0.00 4.52
740 753 8.178313 TGCTATCTGTTCTTCGGATCTTTATA 57.822 34.615 0.00 0.00 41.76 0.98
776 790 1.943340 GAATCCGATTCTGCTTCCCAC 59.057 52.381 13.04 0.00 36.37 4.61
804 818 4.039357 CTCGTGGGCTCGACGTGT 62.039 66.667 0.00 0.00 38.04 4.49
871 889 0.984230 TAGGTGCAGAAAGTGGGGAG 59.016 55.000 0.00 0.00 0.00 4.30
909 927 0.841289 TTCCGGGGAACAGAAGTTGT 59.159 50.000 0.00 0.00 43.45 3.32
932 950 1.433534 GACTGACCGGAGAAAGCTTG 58.566 55.000 9.46 0.00 0.00 4.01
965 989 3.997064 CTCTTCCTCTGCGGTGGCG 62.997 68.421 8.86 2.95 44.10 5.69
966 990 2.125350 CTCTTCCTCTGCGGTGGC 60.125 66.667 8.86 0.00 40.52 5.01
969 993 0.612174 TACTGCTCTTCCTCTGCGGT 60.612 55.000 0.00 0.00 46.44 5.68
974 998 1.944024 CGACGATACTGCTCTTCCTCT 59.056 52.381 0.00 0.00 0.00 3.69
987 1011 4.193865 TGTAGTCCATGAAGACGACGATA 58.806 43.478 0.00 0.00 43.06 2.92
988 1012 3.014623 TGTAGTCCATGAAGACGACGAT 58.985 45.455 0.00 0.00 43.06 3.73
1020 1044 1.818785 GCTGCTGCTGCCTTCCTAG 60.819 63.158 19.30 3.64 38.71 3.02
1023 1047 2.987547 TTGCTGCTGCTGCCTTCC 60.988 61.111 25.44 2.06 40.48 3.46
1043 1084 0.385751 AGAGACACACACCACGTCAG 59.614 55.000 0.00 0.00 31.92 3.51
1047 1088 2.293677 AGAGTAAGAGACACACACCACG 59.706 50.000 0.00 0.00 0.00 4.94
1054 1095 3.821600 GGAGACACAGAGTAAGAGACACA 59.178 47.826 0.00 0.00 0.00 3.72
1055 1096 4.076394 AGGAGACACAGAGTAAGAGACAC 58.924 47.826 0.00 0.00 0.00 3.67
1056 1097 4.075682 CAGGAGACACAGAGTAAGAGACA 58.924 47.826 0.00 0.00 0.00 3.41
1057 1098 4.076394 ACAGGAGACACAGAGTAAGAGAC 58.924 47.826 0.00 0.00 0.00 3.36
1182 1229 0.679505 TGTGGAAAGAGGAGGACGTG 59.320 55.000 0.00 0.00 0.00 4.49
1239 1287 7.308770 CCAGCTCTGTCATTTTTGTTTCAGATA 60.309 37.037 0.00 0.00 32.73 1.98
1240 1288 6.444633 CAGCTCTGTCATTTTTGTTTCAGAT 58.555 36.000 0.00 0.00 32.73 2.90
1241 1289 5.221106 CCAGCTCTGTCATTTTTGTTTCAGA 60.221 40.000 0.00 0.00 0.00 3.27
1253 1301 0.616964 TGGCTCTCCAGCTCTGTCAT 60.617 55.000 0.00 0.00 46.03 3.06
1256 1304 3.386592 GTGGCTCTCCAGCTCTGT 58.613 61.111 0.00 0.00 46.03 3.41
1376 1424 3.011517 GGCCTCCCTGAGCTCCAA 61.012 66.667 12.15 0.00 0.00 3.53
1473 1529 2.186384 GCATCCGAGTGCTCTGCT 59.814 61.111 0.00 0.00 41.82 4.24
1495 1551 5.246203 AGTGTCAGGTCAAGAAGCTAATACA 59.754 40.000 0.00 0.00 33.36 2.29
1496 1552 5.725362 AGTGTCAGGTCAAGAAGCTAATAC 58.275 41.667 0.00 0.00 33.36 1.89
1497 1553 6.360370 AAGTGTCAGGTCAAGAAGCTAATA 57.640 37.500 0.00 0.00 33.36 0.98
1498 1554 4.899352 AGTGTCAGGTCAAGAAGCTAAT 57.101 40.909 0.00 0.00 33.36 1.73
1516 1573 4.010349 GTGGGTAAATCCTCCTGAAAGTG 58.990 47.826 0.00 0.00 36.25 3.16
1524 1582 3.010250 ACAAGAAGGTGGGTAAATCCTCC 59.990 47.826 0.00 0.00 39.95 4.30
1536 1594 0.882042 AGCTCGCACACAAGAAGGTG 60.882 55.000 0.00 0.00 44.35 4.00
1537 1595 0.179045 AAGCTCGCACACAAGAAGGT 60.179 50.000 0.00 0.00 0.00 3.50
1559 1619 9.118300 AGGACTACAGATCAAAATGATGATTTC 57.882 33.333 0.00 0.00 40.08 2.17
1562 1622 8.032045 AGAGGACTACAGATCAAAATGATGAT 57.968 34.615 0.00 0.00 42.62 2.45
1581 1641 6.223852 TCACTCAAACAAGTCATAAGAGGAC 58.776 40.000 0.00 0.00 35.50 3.85
1584 1644 7.721286 AGTTCACTCAAACAAGTCATAAGAG 57.279 36.000 0.00 0.00 0.00 2.85
1585 1645 7.768582 TGAAGTTCACTCAAACAAGTCATAAGA 59.231 33.333 0.08 0.00 0.00 2.10
1588 1648 6.260050 GGTGAAGTTCACTCAAACAAGTCATA 59.740 38.462 29.89 0.00 46.19 2.15
1594 1654 4.155826 CAGTGGTGAAGTTCACTCAAACAA 59.844 41.667 29.89 9.22 46.19 2.83
1618 1695 1.312815 ATCAAGATTAAGCAGGCCGC 58.687 50.000 11.02 11.02 42.91 6.53
1735 1840 7.437713 TGTAGATACCCTGATTCATCAAACT 57.562 36.000 0.00 0.00 36.18 2.66
1737 1842 7.072328 TGGATGTAGATACCCTGATTCATCAAA 59.928 37.037 0.00 0.00 36.18 2.69
1741 1846 7.392766 TTTGGATGTAGATACCCTGATTCAT 57.607 36.000 0.00 0.00 0.00 2.57
1864 1978 1.069378 GTTCCTCGGAAGCGTGTACG 61.069 60.000 0.00 0.00 43.27 3.67
1866 1980 0.963962 AAGTTCCTCGGAAGCGTGTA 59.036 50.000 0.00 0.00 34.49 2.90
1867 1981 0.319641 GAAGTTCCTCGGAAGCGTGT 60.320 55.000 0.00 0.00 34.49 4.49
1871 1985 2.232696 AGAAGAGAAGTTCCTCGGAAGC 59.767 50.000 0.00 0.00 38.19 3.86
2146 2261 5.054390 ACCTACAAATGCCGTGTTTATTG 57.946 39.130 0.00 0.00 0.00 1.90
2157 2272 4.253685 TCTCAGTGCTAACCTACAAATGC 58.746 43.478 0.00 0.00 0.00 3.56
2176 2291 5.392767 TTCTGTCCAGACTGTACATTCTC 57.607 43.478 12.47 3.56 37.14 2.87
2194 2309 2.366533 ACTGCTTGCCTCATGATTCTG 58.633 47.619 0.00 0.00 0.00 3.02
2202 2317 4.019792 TCAAGAAATACTGCTTGCCTCA 57.980 40.909 0.00 0.00 40.89 3.86
2245 2360 4.582973 TGGTTTGGGACATCATCACATA 57.417 40.909 0.00 0.00 41.66 2.29
2246 2361 3.454719 TGGTTTGGGACATCATCACAT 57.545 42.857 0.00 0.00 41.66 3.21
2249 2364 3.005261 CGTTTTGGTTTGGGACATCATCA 59.995 43.478 0.00 0.00 39.30 3.07
2250 2365 3.574614 CGTTTTGGTTTGGGACATCATC 58.425 45.455 0.00 0.00 39.30 2.92
2307 2518 5.876357 TGTTTACCTGAGCTGGTTTCTAAT 58.124 37.500 0.33 0.00 41.22 1.73
2347 2558 3.619419 TGCTTCATGCCACAGCTAAATA 58.381 40.909 0.00 0.00 42.00 1.40
2419 2630 0.099436 GCGGGCAGAAGCACTATTTG 59.901 55.000 0.00 0.00 43.86 2.32
2420 2631 1.032114 GGCGGGCAGAAGCACTATTT 61.032 55.000 0.00 0.00 43.86 1.40
2421 2632 1.452108 GGCGGGCAGAAGCACTATT 60.452 57.895 0.00 0.00 43.86 1.73
2422 2633 2.190578 GGCGGGCAGAAGCACTAT 59.809 61.111 0.00 0.00 43.86 2.12
2423 2634 4.096003 GGGCGGGCAGAAGCACTA 62.096 66.667 3.27 0.00 43.86 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.