Multiple sequence alignment - TraesCS5A01G205800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G205800 chr5A 100.000 5972 0 0 1 5972 415573083 415567112 0.000000e+00 11029
1 TraesCS5A01G205800 chr5A 91.933 2442 135 23 2409 4826 413235202 413237605 0.000000e+00 3362
2 TraesCS5A01G205800 chr5A 95.450 945 23 14 1062 1995 413232104 413233039 0.000000e+00 1489
3 TraesCS5A01G205800 chr5A 88.128 438 33 11 551 985 413231554 413231975 2.480000e-138 503
4 TraesCS5A01G205800 chr5A 94.545 275 14 1 116 390 180144616 180144343 1.990000e-114 424
5 TraesCS5A01G205800 chr5A 84.962 399 40 9 2025 2413 413233187 413233575 2.610000e-103 387
6 TraesCS5A01G205800 chr5D 92.262 2869 191 18 2409 5266 318886217 318889065 0.000000e+00 4039
7 TraesCS5A01G205800 chr5D 88.470 1804 121 34 1078 2859 321386071 321384333 0.000000e+00 2098
8 TraesCS5A01G205800 chr5D 94.323 1374 65 4 3457 4827 321378448 321377085 0.000000e+00 2093
9 TraesCS5A01G205800 chr5D 85.018 1375 92 63 988 2290 318883648 318884980 0.000000e+00 1293
10 TraesCS5A01G205800 chr5D 91.549 710 52 5 5264 5972 318889623 318890325 0.000000e+00 972
11 TraesCS5A01G205800 chr5D 95.528 492 22 0 2968 3459 321383916 321383425 0.000000e+00 787
12 TraesCS5A01G205800 chr5D 84.603 604 45 27 386 979 321386792 321386227 1.880000e-154 556
13 TraesCS5A01G205800 chr5D 95.522 268 12 0 115 382 156580823 156580556 4.280000e-116 429
14 TraesCS5A01G205800 chr5D 80.560 607 60 29 386 982 318883028 318883586 1.200000e-111 414
15 TraesCS5A01G205800 chr5B 92.591 2794 168 22 2031 4818 372167329 372164569 0.000000e+00 3976
16 TraesCS5A01G205800 chr5B 94.465 1879 95 5 2975 4849 368720362 368722235 0.000000e+00 2885
17 TraesCS5A01G205800 chr5B 85.880 1296 84 51 499 1743 372168943 372167696 0.000000e+00 1288
18 TraesCS5A01G205800 chr5B 85.842 1010 79 39 1406 2372 368697287 368698275 0.000000e+00 1014
19 TraesCS5A01G205800 chr5B 89.422 709 64 7 5264 5972 368722970 368723667 0.000000e+00 883
20 TraesCS5A01G205800 chr5B 91.618 346 15 8 1066 1404 368695308 368695646 3.260000e-127 466
21 TraesCS5A01G205800 chr5B 80.190 631 50 31 386 986 368694575 368695160 2.590000e-108 403
22 TraesCS5A01G205800 chr5B 90.106 283 11 6 1729 1995 372167686 372167405 9.520000e-93 351
23 TraesCS5A01G205800 chrUn 100.000 387 0 0 1126 1512 480390217 480389831 0.000000e+00 715
24 TraesCS5A01G205800 chr4A 96.958 263 8 0 115 377 541788113 541788375 5.490000e-120 442
25 TraesCS5A01G205800 chr4A 91.349 289 21 1 4542 4826 70976050 70975762 5.610000e-105 392
26 TraesCS5A01G205800 chr7A 96.241 266 10 0 115 380 610710702 610710437 2.560000e-118 436
27 TraesCS5A01G205800 chr7A 95.896 268 11 0 115 382 627156445 627156712 9.190000e-118 435
28 TraesCS5A01G205800 chr7A 87.117 163 9 8 1152 1313 711597700 711597851 2.210000e-39 174
29 TraesCS5A01G205800 chr7A 90.164 122 12 0 2140 2261 711598351 711598472 6.200000e-35 159
30 TraesCS5A01G205800 chr6A 95.926 270 10 1 115 384 38758079 38757811 2.560000e-118 436
31 TraesCS5A01G205800 chr6A 100.000 119 0 0 1 119 144514097 144513979 2.800000e-53 220
32 TraesCS5A01G205800 chr3B 96.198 263 10 0 115 377 423737225 423737487 1.190000e-116 431
33 TraesCS5A01G205800 chr3D 95.203 271 13 0 115 385 385871043 385870773 4.280000e-116 429
34 TraesCS5A01G205800 chr7B 95.203 271 12 1 116 385 132966615 132966885 1.540000e-115 427
35 TraesCS5A01G205800 chr7B 86.207 174 10 10 1142 1312 712080324 712080162 6.150000e-40 176
36 TraesCS5A01G205800 chr7B 87.500 120 15 0 2140 2259 711888586 711888705 8.070000e-29 139
37 TraesCS5A01G205800 chr7B 83.333 150 22 3 2144 2292 712079615 712079468 1.040000e-27 135
38 TraesCS5A01G205800 chr7B 88.462 104 6 3 1209 1312 711886712 711886809 2.920000e-23 121
39 TraesCS5A01G205800 chr4B 100.000 119 0 0 1 119 4887526 4887408 2.800000e-53 220
40 TraesCS5A01G205800 chr4B 100.000 119 0 0 1 119 128541069 128541187 2.800000e-53 220
41 TraesCS5A01G205800 chr4B 100.000 119 0 0 1 119 240174915 240175033 2.800000e-53 220
42 TraesCS5A01G205800 chr4B 100.000 119 0 0 1 119 245685974 245686092 2.800000e-53 220
43 TraesCS5A01G205800 chr4B 100.000 119 0 0 1 119 363006883 363006765 2.800000e-53 220
44 TraesCS5A01G205800 chr4B 100.000 119 0 0 1 119 370705778 370705896 2.800000e-53 220
45 TraesCS5A01G205800 chr4B 100.000 119 0 0 1 119 371984900 371984782 2.800000e-53 220
46 TraesCS5A01G205800 chr4B 100.000 119 0 0 1 119 492204541 492204659 2.800000e-53 220
47 TraesCS5A01G205800 chr7D 85.876 177 11 10 1142 1315 617824520 617824355 6.150000e-40 176
48 TraesCS5A01G205800 chr7D 84.783 138 18 2 2121 2258 617823850 617823716 1.040000e-27 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G205800 chr5A 415567112 415573083 5971 True 11029.000000 11029 100.000000 1 5972 1 chr5A.!!$R2 5971
1 TraesCS5A01G205800 chr5A 413231554 413237605 6051 False 1435.250000 3362 90.118250 551 4826 4 chr5A.!!$F1 4275
2 TraesCS5A01G205800 chr5D 321377085 321378448 1363 True 2093.000000 2093 94.323000 3457 4827 1 chr5D.!!$R2 1370
3 TraesCS5A01G205800 chr5D 318883028 318890325 7297 False 1679.500000 4039 87.347250 386 5972 4 chr5D.!!$F1 5586
4 TraesCS5A01G205800 chr5D 321383425 321386792 3367 True 1147.000000 2098 89.533667 386 3459 3 chr5D.!!$R3 3073
5 TraesCS5A01G205800 chr5B 368720362 368723667 3305 False 1884.000000 2885 91.943500 2975 5972 2 chr5B.!!$F2 2997
6 TraesCS5A01G205800 chr5B 372164569 372168943 4374 True 1871.666667 3976 89.525667 499 4818 3 chr5B.!!$R1 4319
7 TraesCS5A01G205800 chr5B 368694575 368698275 3700 False 627.666667 1014 85.883333 386 2372 3 chr5B.!!$F1 1986

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 237 0.034756 CCGGAACATCACACACTCCA 59.965 55.0 0.0 0.00 0.00 3.86 F
676 743 0.321919 AGAATGCAAGGCGAGCTCAA 60.322 50.0 15.4 0.00 0.00 3.02 F
1817 3719 0.620410 TTGATCCCCACCACCGAGAT 60.620 55.0 0.0 0.00 0.00 2.75 F
2829 6652 0.670546 CACGATGGTTCAGCTTCGGT 60.671 55.0 15.9 2.79 35.98 4.69 F
3859 8042 0.685097 CTTGGAGGACCGTCTTGGAA 59.315 55.0 0.0 0.00 42.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1822 3724 0.659417 TCGAACGCGACTGTTCAGTC 60.659 55.000 15.93 19.32 46.77 3.51 R
2492 6309 0.607112 TCTGCTCTGTTCAGCTCCTG 59.393 55.000 0.00 0.00 40.39 3.86 R
3126 7303 1.066430 ACTTACCATCATGGACGCGTT 60.066 47.619 15.53 0.00 40.96 4.84 R
4561 8754 0.250234 CCTCATCACCTCCTGCGAAA 59.750 55.000 0.00 0.00 0.00 3.46 R
5620 10467 0.112995 AAATCCCAAGTGCTGCAGGA 59.887 50.000 17.12 10.66 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.704076 TGGATTGGAGGGTTTGGAGG 59.296 55.000 0.00 0.00 0.00 4.30
20 21 0.999712 GGATTGGAGGGTTTGGAGGA 59.000 55.000 0.00 0.00 0.00 3.71
21 22 1.570979 GGATTGGAGGGTTTGGAGGAT 59.429 52.381 0.00 0.00 0.00 3.24
22 23 2.783510 GGATTGGAGGGTTTGGAGGATA 59.216 50.000 0.00 0.00 0.00 2.59
23 24 3.204382 GGATTGGAGGGTTTGGAGGATAA 59.796 47.826 0.00 0.00 0.00 1.75
24 25 4.140924 GGATTGGAGGGTTTGGAGGATAAT 60.141 45.833 0.00 0.00 0.00 1.28
25 26 5.074515 GGATTGGAGGGTTTGGAGGATAATA 59.925 44.000 0.00 0.00 0.00 0.98
26 27 6.411554 GGATTGGAGGGTTTGGAGGATAATAA 60.412 42.308 0.00 0.00 0.00 1.40
27 28 6.410222 TTGGAGGGTTTGGAGGATAATAAA 57.590 37.500 0.00 0.00 0.00 1.40
28 29 6.606241 TGGAGGGTTTGGAGGATAATAAAT 57.394 37.500 0.00 0.00 0.00 1.40
29 30 6.372931 TGGAGGGTTTGGAGGATAATAAATG 58.627 40.000 0.00 0.00 0.00 2.32
30 31 5.243954 GGAGGGTTTGGAGGATAATAAATGC 59.756 44.000 0.00 0.00 0.00 3.56
31 32 6.030727 AGGGTTTGGAGGATAATAAATGCT 57.969 37.500 0.00 0.00 0.00 3.79
32 33 6.071320 AGGGTTTGGAGGATAATAAATGCTC 58.929 40.000 0.00 0.00 36.02 4.26
33 34 5.833131 GGGTTTGGAGGATAATAAATGCTCA 59.167 40.000 8.48 0.00 38.10 4.26
34 35 6.323739 GGGTTTGGAGGATAATAAATGCTCAA 59.676 38.462 8.48 0.00 38.10 3.02
35 36 7.015584 GGGTTTGGAGGATAATAAATGCTCAAT 59.984 37.037 8.48 0.00 38.10 2.57
36 37 9.077885 GGTTTGGAGGATAATAAATGCTCAATA 57.922 33.333 8.48 0.00 38.10 1.90
39 40 9.866655 TTGGAGGATAATAAATGCTCAATAACT 57.133 29.630 8.48 0.00 38.10 2.24
72 73 7.051000 AGTCTCTTTAGTATTTGGATCCAAGC 58.949 38.462 25.69 19.18 37.24 4.01
73 74 6.823689 GTCTCTTTAGTATTTGGATCCAAGCA 59.176 38.462 25.69 14.00 37.24 3.91
74 75 7.500559 GTCTCTTTAGTATTTGGATCCAAGCAT 59.499 37.037 25.69 19.69 37.24 3.79
75 76 7.500227 TCTCTTTAGTATTTGGATCCAAGCATG 59.500 37.037 25.69 12.43 37.24 4.06
86 87 2.322355 CCAAGCATGGGTGAGACTAG 57.678 55.000 0.00 0.00 43.51 2.57
87 88 1.661341 CAAGCATGGGTGAGACTAGC 58.339 55.000 0.00 0.00 0.00 3.42
88 89 1.065926 CAAGCATGGGTGAGACTAGCA 60.066 52.381 0.00 0.00 0.00 3.49
89 90 1.279496 AGCATGGGTGAGACTAGCAA 58.721 50.000 0.00 0.00 0.00 3.91
90 91 1.209019 AGCATGGGTGAGACTAGCAAG 59.791 52.381 0.00 0.00 0.00 4.01
91 92 1.065854 GCATGGGTGAGACTAGCAAGT 60.066 52.381 0.00 0.00 39.21 3.16
92 93 2.616510 GCATGGGTGAGACTAGCAAGTT 60.617 50.000 0.00 0.00 35.56 2.66
93 94 3.679389 CATGGGTGAGACTAGCAAGTTT 58.321 45.455 0.00 0.00 35.56 2.66
94 95 3.857157 TGGGTGAGACTAGCAAGTTTT 57.143 42.857 0.00 0.00 35.56 2.43
95 96 4.967084 TGGGTGAGACTAGCAAGTTTTA 57.033 40.909 0.00 0.00 35.56 1.52
96 97 4.894784 TGGGTGAGACTAGCAAGTTTTAG 58.105 43.478 0.00 0.00 35.56 1.85
97 98 4.347000 TGGGTGAGACTAGCAAGTTTTAGT 59.653 41.667 0.00 0.00 35.56 2.24
98 99 4.930405 GGGTGAGACTAGCAAGTTTTAGTC 59.070 45.833 13.08 13.08 43.83 2.59
99 100 4.930405 GGTGAGACTAGCAAGTTTTAGTCC 59.070 45.833 15.72 10.59 44.32 3.85
100 101 4.930405 GTGAGACTAGCAAGTTTTAGTCCC 59.070 45.833 15.72 8.76 44.32 4.46
101 102 4.591498 TGAGACTAGCAAGTTTTAGTCCCA 59.409 41.667 15.72 10.61 44.32 4.37
102 103 4.895961 AGACTAGCAAGTTTTAGTCCCAC 58.104 43.478 15.72 0.00 44.32 4.61
103 104 4.593634 AGACTAGCAAGTTTTAGTCCCACT 59.406 41.667 15.72 1.62 44.32 4.00
104 105 5.778750 AGACTAGCAAGTTTTAGTCCCACTA 59.221 40.000 15.72 0.00 44.32 2.74
105 106 5.791666 ACTAGCAAGTTTTAGTCCCACTAC 58.208 41.667 0.00 0.00 27.15 2.73
106 107 4.976540 AGCAAGTTTTAGTCCCACTACT 57.023 40.909 0.00 0.00 28.93 2.57
107 108 5.306114 AGCAAGTTTTAGTCCCACTACTT 57.694 39.130 0.00 0.00 28.93 2.24
108 109 5.691896 AGCAAGTTTTAGTCCCACTACTTT 58.308 37.500 0.00 0.00 28.93 2.66
109 110 6.127101 AGCAAGTTTTAGTCCCACTACTTTT 58.873 36.000 0.00 0.00 28.93 2.27
110 111 7.284820 AGCAAGTTTTAGTCCCACTACTTTTA 58.715 34.615 0.00 0.00 28.93 1.52
111 112 7.444487 AGCAAGTTTTAGTCCCACTACTTTTAG 59.556 37.037 0.00 0.00 28.93 1.85
112 113 7.228108 GCAAGTTTTAGTCCCACTACTTTTAGT 59.772 37.037 0.00 0.00 39.30 2.24
113 114 8.771766 CAAGTTTTAGTCCCACTACTTTTAGTC 58.228 37.037 0.00 0.00 36.31 2.59
114 115 8.026396 AGTTTTAGTCCCACTACTTTTAGTCA 57.974 34.615 0.00 0.00 36.31 3.41
115 116 8.657712 AGTTTTAGTCCCACTACTTTTAGTCAT 58.342 33.333 0.00 0.00 36.31 3.06
116 117 8.718734 GTTTTAGTCCCACTACTTTTAGTCATG 58.281 37.037 0.00 0.00 36.31 3.07
117 118 5.422214 AGTCCCACTACTTTTAGTCATGG 57.578 43.478 0.00 0.00 36.31 3.66
118 119 4.225267 AGTCCCACTACTTTTAGTCATGGG 59.775 45.833 16.70 16.70 46.94 4.00
119 120 3.521937 TCCCACTACTTTTAGTCATGGGG 59.478 47.826 20.12 11.46 46.19 4.96
120 121 3.521937 CCCACTACTTTTAGTCATGGGGA 59.478 47.826 15.66 0.00 44.16 4.81
121 122 4.384208 CCCACTACTTTTAGTCATGGGGAG 60.384 50.000 15.66 0.00 44.16 4.30
122 123 4.384208 CCACTACTTTTAGTCATGGGGAGG 60.384 50.000 0.00 0.00 36.31 4.30
123 124 4.469945 CACTACTTTTAGTCATGGGGAGGA 59.530 45.833 0.00 0.00 36.31 3.71
124 125 5.045869 CACTACTTTTAGTCATGGGGAGGAA 60.046 44.000 0.00 0.00 36.31 3.36
125 126 4.302559 ACTTTTAGTCATGGGGAGGAAC 57.697 45.455 0.00 0.00 0.00 3.62
126 127 7.213227 ACTACTTTTAGTCATGGGGAGGAACT 61.213 42.308 0.00 0.00 35.54 3.01
127 128 4.354087 ACTTTTAGTCATGGGGAGGAACTT 59.646 41.667 0.00 0.00 41.55 2.66
128 129 5.550403 ACTTTTAGTCATGGGGAGGAACTTA 59.450 40.000 0.00 0.00 41.55 2.24
129 130 5.693769 TTTAGTCATGGGGAGGAACTTAG 57.306 43.478 0.00 0.00 41.55 2.18
130 131 2.482494 AGTCATGGGGAGGAACTTAGG 58.518 52.381 0.00 0.00 41.55 2.69
131 132 2.045885 AGTCATGGGGAGGAACTTAGGA 59.954 50.000 0.00 0.00 41.55 2.94
132 133 2.436173 GTCATGGGGAGGAACTTAGGAG 59.564 54.545 0.00 0.00 41.55 3.69
133 134 2.045885 TCATGGGGAGGAACTTAGGAGT 59.954 50.000 0.00 0.00 41.55 3.85
134 135 3.273886 TCATGGGGAGGAACTTAGGAGTA 59.726 47.826 0.00 0.00 41.55 2.59
135 136 3.858696 TGGGGAGGAACTTAGGAGTAA 57.141 47.619 0.00 0.00 41.55 2.24
136 137 3.447950 TGGGGAGGAACTTAGGAGTAAC 58.552 50.000 0.00 0.00 41.55 2.50
137 138 3.181404 TGGGGAGGAACTTAGGAGTAACA 60.181 47.826 0.00 0.00 41.55 2.41
138 139 4.038633 GGGGAGGAACTTAGGAGTAACAT 58.961 47.826 0.00 0.00 41.55 2.71
139 140 4.101274 GGGGAGGAACTTAGGAGTAACATC 59.899 50.000 0.00 0.00 41.55 3.06
140 141 4.715297 GGGAGGAACTTAGGAGTAACATCA 59.285 45.833 0.00 0.00 41.55 3.07
141 142 5.395435 GGGAGGAACTTAGGAGTAACATCAC 60.395 48.000 0.00 0.00 41.55 3.06
142 143 5.187186 GGAGGAACTTAGGAGTAACATCACA 59.813 44.000 0.00 0.00 41.55 3.58
143 144 6.127026 GGAGGAACTTAGGAGTAACATCACAT 60.127 42.308 0.00 0.00 41.55 3.21
144 145 7.069578 GGAGGAACTTAGGAGTAACATCACATA 59.930 40.741 0.00 0.00 41.55 2.29
145 146 7.783042 AGGAACTTAGGAGTAACATCACATAC 58.217 38.462 0.00 0.00 34.21 2.39
146 147 7.620094 AGGAACTTAGGAGTAACATCACATACT 59.380 37.037 0.00 0.00 34.21 2.12
147 148 8.258708 GGAACTTAGGAGTAACATCACATACTT 58.741 37.037 0.00 0.00 34.21 2.24
148 149 9.303537 GAACTTAGGAGTAACATCACATACTTC 57.696 37.037 0.00 0.00 34.21 3.01
149 150 8.362464 ACTTAGGAGTAACATCACATACTTCA 57.638 34.615 0.00 0.00 33.32 3.02
150 151 8.812972 ACTTAGGAGTAACATCACATACTTCAA 58.187 33.333 0.00 0.00 33.32 2.69
151 152 9.823647 CTTAGGAGTAACATCACATACTTCAAT 57.176 33.333 0.00 0.00 32.66 2.57
154 155 8.758829 AGGAGTAACATCACATACTTCAATACA 58.241 33.333 0.00 0.00 32.66 2.29
155 156 9.378551 GGAGTAACATCACATACTTCAATACAA 57.621 33.333 0.00 0.00 32.66 2.41
157 158 9.944376 AGTAACATCACATACTTCAATACAACT 57.056 29.630 0.00 0.00 0.00 3.16
160 161 9.897744 AACATCACATACTTCAATACAACTTTG 57.102 29.630 0.00 0.00 0.00 2.77
161 162 8.023128 ACATCACATACTTCAATACAACTTTGC 58.977 33.333 0.00 0.00 0.00 3.68
162 163 7.744087 TCACATACTTCAATACAACTTTGCT 57.256 32.000 0.00 0.00 0.00 3.91
163 164 8.165239 TCACATACTTCAATACAACTTTGCTT 57.835 30.769 0.00 0.00 0.00 3.91
164 165 9.278978 TCACATACTTCAATACAACTTTGCTTA 57.721 29.630 0.00 0.00 0.00 3.09
170 171 8.190784 ACTTCAATACAACTTTGCTTATATGGC 58.809 33.333 0.00 0.00 0.00 4.40
171 172 7.637631 TCAATACAACTTTGCTTATATGGCA 57.362 32.000 0.00 0.00 37.97 4.92
172 173 7.479980 TCAATACAACTTTGCTTATATGGCAC 58.520 34.615 0.00 0.00 39.55 5.01
192 193 7.999679 TGGCACATATTTAATGAAGAAAGAGG 58.000 34.615 0.00 0.00 0.00 3.69
193 194 7.615365 TGGCACATATTTAATGAAGAAAGAGGT 59.385 33.333 0.00 0.00 0.00 3.85
194 195 7.917505 GGCACATATTTAATGAAGAAAGAGGTG 59.082 37.037 3.87 3.87 40.71 4.00
195 196 8.847444 CACATATTTAATGAAGAAAGAGGTGC 57.153 34.615 0.00 0.00 34.39 5.01
196 197 8.680903 CACATATTTAATGAAGAAAGAGGTGCT 58.319 33.333 0.00 0.00 34.39 4.40
197 198 9.247861 ACATATTTAATGAAGAAAGAGGTGCTT 57.752 29.630 0.00 0.00 38.88 3.91
198 199 9.512435 CATATTTAATGAAGAAAGAGGTGCTTG 57.488 33.333 0.00 0.00 36.80 4.01
199 200 6.959639 TTTAATGAAGAAAGAGGTGCTTGT 57.040 33.333 0.00 0.00 36.80 3.16
200 201 4.843220 AATGAAGAAAGAGGTGCTTGTG 57.157 40.909 0.00 0.00 36.80 3.33
201 202 2.575532 TGAAGAAAGAGGTGCTTGTGG 58.424 47.619 0.00 0.00 36.80 4.17
202 203 2.092429 TGAAGAAAGAGGTGCTTGTGGT 60.092 45.455 0.00 0.00 36.80 4.16
203 204 3.135712 TGAAGAAAGAGGTGCTTGTGGTA 59.864 43.478 0.00 0.00 36.80 3.25
204 205 3.857157 AGAAAGAGGTGCTTGTGGTAA 57.143 42.857 0.00 0.00 36.80 2.85
205 206 3.477530 AGAAAGAGGTGCTTGTGGTAAC 58.522 45.455 0.00 0.00 36.80 2.50
206 207 3.136626 AGAAAGAGGTGCTTGTGGTAACT 59.863 43.478 0.00 0.00 36.80 2.24
207 208 4.347000 AGAAAGAGGTGCTTGTGGTAACTA 59.653 41.667 0.00 0.00 36.80 2.24
208 209 3.963428 AGAGGTGCTTGTGGTAACTAG 57.037 47.619 0.00 0.00 37.61 2.57
225 226 5.672421 AACTAGCTAAGTTACCGGAACAT 57.328 39.130 9.46 4.03 46.85 2.71
226 227 5.259832 ACTAGCTAAGTTACCGGAACATC 57.740 43.478 9.46 0.00 40.86 3.06
227 228 4.708421 ACTAGCTAAGTTACCGGAACATCA 59.292 41.667 9.46 0.00 40.86 3.07
228 229 3.858247 AGCTAAGTTACCGGAACATCAC 58.142 45.455 9.46 0.66 40.86 3.06
229 230 3.259876 AGCTAAGTTACCGGAACATCACA 59.740 43.478 9.46 0.00 40.86 3.58
230 231 3.370061 GCTAAGTTACCGGAACATCACAC 59.630 47.826 9.46 0.00 40.86 3.82
231 232 3.478857 AAGTTACCGGAACATCACACA 57.521 42.857 9.46 0.00 40.86 3.72
232 233 2.762745 AGTTACCGGAACATCACACAC 58.237 47.619 9.46 0.00 40.86 3.82
233 234 2.367567 AGTTACCGGAACATCACACACT 59.632 45.455 9.46 0.00 40.86 3.55
234 235 2.735134 GTTACCGGAACATCACACACTC 59.265 50.000 9.46 0.00 38.02 3.51
235 236 0.034896 ACCGGAACATCACACACTCC 59.965 55.000 9.46 0.00 0.00 3.85
236 237 0.034756 CCGGAACATCACACACTCCA 59.965 55.000 0.00 0.00 0.00 3.86
237 238 1.542328 CCGGAACATCACACACTCCAA 60.542 52.381 0.00 0.00 0.00 3.53
238 239 1.800586 CGGAACATCACACACTCCAAG 59.199 52.381 0.00 0.00 0.00 3.61
239 240 2.547855 CGGAACATCACACACTCCAAGA 60.548 50.000 0.00 0.00 0.00 3.02
240 241 3.476552 GGAACATCACACACTCCAAGAA 58.523 45.455 0.00 0.00 0.00 2.52
241 242 3.882888 GGAACATCACACACTCCAAGAAA 59.117 43.478 0.00 0.00 0.00 2.52
242 243 4.261197 GGAACATCACACACTCCAAGAAAC 60.261 45.833 0.00 0.00 0.00 2.78
243 244 3.884895 ACATCACACACTCCAAGAAACA 58.115 40.909 0.00 0.00 0.00 2.83
244 245 4.269183 ACATCACACACTCCAAGAAACAA 58.731 39.130 0.00 0.00 0.00 2.83
245 246 4.889409 ACATCACACACTCCAAGAAACAAT 59.111 37.500 0.00 0.00 0.00 2.71
246 247 4.898829 TCACACACTCCAAGAAACAATG 57.101 40.909 0.00 0.00 0.00 2.82
247 248 4.522114 TCACACACTCCAAGAAACAATGA 58.478 39.130 0.00 0.00 0.00 2.57
248 249 4.576053 TCACACACTCCAAGAAACAATGAG 59.424 41.667 0.00 0.00 0.00 2.90
249 250 4.336433 CACACACTCCAAGAAACAATGAGT 59.664 41.667 0.00 0.00 36.77 3.41
250 251 4.576463 ACACACTCCAAGAAACAATGAGTC 59.424 41.667 0.00 0.00 34.21 3.36
251 252 4.818546 CACACTCCAAGAAACAATGAGTCT 59.181 41.667 0.00 0.00 34.21 3.24
252 253 5.991606 CACACTCCAAGAAACAATGAGTCTA 59.008 40.000 0.00 0.00 34.21 2.59
253 254 6.652481 CACACTCCAAGAAACAATGAGTCTAT 59.348 38.462 0.00 0.00 34.21 1.98
254 255 7.819415 CACACTCCAAGAAACAATGAGTCTATA 59.181 37.037 0.00 0.00 34.21 1.31
255 256 8.543774 ACACTCCAAGAAACAATGAGTCTATAT 58.456 33.333 0.00 0.00 34.21 0.86
256 257 9.039870 CACTCCAAGAAACAATGAGTCTATATC 57.960 37.037 0.00 0.00 34.21 1.63
257 258 8.207545 ACTCCAAGAAACAATGAGTCTATATCC 58.792 37.037 0.00 0.00 30.81 2.59
258 259 8.324191 TCCAAGAAACAATGAGTCTATATCCT 57.676 34.615 0.00 0.00 0.00 3.24
259 260 9.434275 TCCAAGAAACAATGAGTCTATATCCTA 57.566 33.333 0.00 0.00 0.00 2.94
279 280 8.846943 ATCCTAATAAATACATCGTTGCATGA 57.153 30.769 0.00 0.00 0.00 3.07
280 281 8.083462 TCCTAATAAATACATCGTTGCATGAC 57.917 34.615 0.00 0.00 0.00 3.06
281 282 7.713073 TCCTAATAAATACATCGTTGCATGACA 59.287 33.333 0.00 0.00 0.00 3.58
282 283 7.798516 CCTAATAAATACATCGTTGCATGACAC 59.201 37.037 0.00 0.00 0.00 3.67
283 284 6.925610 ATAAATACATCGTTGCATGACACT 57.074 33.333 0.00 0.00 0.00 3.55
284 285 8.432110 AATAAATACATCGTTGCATGACACTA 57.568 30.769 0.00 0.00 0.00 2.74
285 286 5.718649 AATACATCGTTGCATGACACTAC 57.281 39.130 0.00 0.00 0.00 2.73
286 287 3.038788 ACATCGTTGCATGACACTACA 57.961 42.857 0.00 0.00 0.00 2.74
287 288 3.599343 ACATCGTTGCATGACACTACAT 58.401 40.909 0.00 0.00 0.00 2.29
288 289 4.754322 ACATCGTTGCATGACACTACATA 58.246 39.130 0.00 0.00 0.00 2.29
289 290 4.805719 ACATCGTTGCATGACACTACATAG 59.194 41.667 0.00 0.00 0.00 2.23
290 291 4.712122 TCGTTGCATGACACTACATAGA 57.288 40.909 0.00 0.00 0.00 1.98
291 292 5.262588 TCGTTGCATGACACTACATAGAT 57.737 39.130 0.00 0.00 0.00 1.98
292 293 5.043248 TCGTTGCATGACACTACATAGATG 58.957 41.667 0.00 0.00 0.00 2.90
293 294 4.805719 CGTTGCATGACACTACATAGATGT 59.194 41.667 0.00 0.08 44.48 3.06
294 295 5.291858 CGTTGCATGACACTACATAGATGTT 59.708 40.000 0.00 0.00 41.97 2.71
295 296 6.508563 CGTTGCATGACACTACATAGATGTTC 60.509 42.308 0.00 0.00 41.97 3.18
296 297 5.359756 TGCATGACACTACATAGATGTTCC 58.640 41.667 0.00 0.00 41.97 3.62
297 298 5.129320 TGCATGACACTACATAGATGTTCCT 59.871 40.000 0.00 0.00 41.97 3.36
298 299 6.323739 TGCATGACACTACATAGATGTTCCTA 59.676 38.462 0.00 0.00 41.97 2.94
299 300 6.642950 GCATGACACTACATAGATGTTCCTAC 59.357 42.308 0.00 0.00 41.97 3.18
300 301 6.710597 TGACACTACATAGATGTTCCTACC 57.289 41.667 0.00 0.00 41.97 3.18
301 302 5.597182 TGACACTACATAGATGTTCCTACCC 59.403 44.000 0.00 0.00 41.97 3.69
302 303 5.525484 ACACTACATAGATGTTCCTACCCA 58.475 41.667 0.00 0.00 41.97 4.51
303 304 5.363005 ACACTACATAGATGTTCCTACCCAC 59.637 44.000 0.00 0.00 41.97 4.61
304 305 5.598830 CACTACATAGATGTTCCTACCCACT 59.401 44.000 0.00 0.00 41.97 4.00
305 306 6.776116 CACTACATAGATGTTCCTACCCACTA 59.224 42.308 0.00 0.00 41.97 2.74
306 307 7.451877 CACTACATAGATGTTCCTACCCACTAT 59.548 40.741 0.00 0.00 41.97 2.12
307 308 6.672266 ACATAGATGTTCCTACCCACTATG 57.328 41.667 0.00 0.00 37.90 2.23
308 309 5.544176 ACATAGATGTTCCTACCCACTATGG 59.456 44.000 0.81 0.00 37.90 2.74
309 310 4.280789 AGATGTTCCTACCCACTATGGA 57.719 45.455 0.00 0.00 40.96 3.41
310 311 4.227197 AGATGTTCCTACCCACTATGGAG 58.773 47.826 0.00 0.00 40.96 3.86
311 312 2.759355 TGTTCCTACCCACTATGGAGG 58.241 52.381 0.00 0.00 40.96 4.30
312 313 2.045326 TGTTCCTACCCACTATGGAGGT 59.955 50.000 0.00 1.66 40.96 3.85
313 314 3.272818 TGTTCCTACCCACTATGGAGGTA 59.727 47.826 0.00 3.53 40.96 3.08
314 315 4.264941 TGTTCCTACCCACTATGGAGGTAA 60.265 45.833 0.00 0.00 40.96 2.85
315 316 4.845530 TCCTACCCACTATGGAGGTAAT 57.154 45.455 0.00 0.00 40.96 1.89
316 317 5.954004 TCCTACCCACTATGGAGGTAATA 57.046 43.478 0.00 0.00 40.96 0.98
317 318 6.297830 TCCTACCCACTATGGAGGTAATAA 57.702 41.667 0.00 0.00 40.96 1.40
318 319 6.080009 TCCTACCCACTATGGAGGTAATAAC 58.920 44.000 0.00 0.00 40.96 1.89
319 320 5.842328 CCTACCCACTATGGAGGTAATAACA 59.158 44.000 0.00 0.00 40.96 2.41
320 321 6.500751 CCTACCCACTATGGAGGTAATAACAT 59.499 42.308 0.00 0.00 40.96 2.71
321 322 7.676893 CCTACCCACTATGGAGGTAATAACATA 59.323 40.741 0.00 0.00 40.96 2.29
322 323 7.554959 ACCCACTATGGAGGTAATAACATAG 57.445 40.000 8.52 8.52 45.07 2.23
329 330 9.191479 CTATGGAGGTAATAACATAGTCTAGGG 57.809 40.741 0.00 0.00 38.48 3.53
330 331 7.170554 TGGAGGTAATAACATAGTCTAGGGA 57.829 40.000 0.00 0.00 0.00 4.20
331 332 7.598248 TGGAGGTAATAACATAGTCTAGGGAA 58.402 38.462 0.00 0.00 0.00 3.97
332 333 8.069356 TGGAGGTAATAACATAGTCTAGGGAAA 58.931 37.037 0.00 0.00 0.00 3.13
333 334 9.102453 GGAGGTAATAACATAGTCTAGGGAAAT 57.898 37.037 0.00 0.00 0.00 2.17
334 335 9.930693 GAGGTAATAACATAGTCTAGGGAAATG 57.069 37.037 0.00 0.00 0.00 2.32
335 336 9.448587 AGGTAATAACATAGTCTAGGGAAATGT 57.551 33.333 0.00 0.00 34.09 2.71
336 337 9.490379 GGTAATAACATAGTCTAGGGAAATGTG 57.510 37.037 0.00 0.00 33.44 3.21
341 342 7.735326 ACATAGTCTAGGGAAATGTGTAAGT 57.265 36.000 0.00 0.00 32.54 2.24
342 343 8.147244 ACATAGTCTAGGGAAATGTGTAAGTT 57.853 34.615 0.00 0.00 32.54 2.66
343 344 9.263446 ACATAGTCTAGGGAAATGTGTAAGTTA 57.737 33.333 0.00 0.00 32.54 2.24
344 345 9.530633 CATAGTCTAGGGAAATGTGTAAGTTAC 57.469 37.037 6.06 6.06 0.00 2.50
345 346 7.793948 AGTCTAGGGAAATGTGTAAGTTACT 57.206 36.000 14.00 0.00 0.00 2.24
346 347 8.890410 AGTCTAGGGAAATGTGTAAGTTACTA 57.110 34.615 14.00 4.12 0.00 1.82
347 348 8.968969 AGTCTAGGGAAATGTGTAAGTTACTAG 58.031 37.037 14.00 4.64 0.00 2.57
348 349 8.747471 GTCTAGGGAAATGTGTAAGTTACTAGT 58.253 37.037 14.00 0.00 0.00 2.57
349 350 9.317827 TCTAGGGAAATGTGTAAGTTACTAGTT 57.682 33.333 14.00 8.50 0.00 2.24
350 351 9.939802 CTAGGGAAATGTGTAAGTTACTAGTTT 57.060 33.333 14.00 10.89 0.00 2.66
359 360 9.616634 TGTGTAAGTTACTAGTTTATGTTCTCG 57.383 33.333 14.00 0.00 0.00 4.04
360 361 8.582096 GTGTAAGTTACTAGTTTATGTTCTCGC 58.418 37.037 14.00 0.00 0.00 5.03
361 362 8.517878 TGTAAGTTACTAGTTTATGTTCTCGCT 58.482 33.333 14.00 0.00 0.00 4.93
362 363 9.008289 GTAAGTTACTAGTTTATGTTCTCGCTC 57.992 37.037 0.00 0.00 0.00 5.03
363 364 7.154435 AGTTACTAGTTTATGTTCTCGCTCA 57.846 36.000 0.00 0.00 0.00 4.26
364 365 7.773149 AGTTACTAGTTTATGTTCTCGCTCAT 58.227 34.615 0.00 0.00 0.00 2.90
365 366 8.251721 AGTTACTAGTTTATGTTCTCGCTCATT 58.748 33.333 0.00 0.00 0.00 2.57
366 367 6.893958 ACTAGTTTATGTTCTCGCTCATTG 57.106 37.500 0.00 0.00 0.00 2.82
367 368 6.398918 ACTAGTTTATGTTCTCGCTCATTGT 58.601 36.000 0.00 0.00 0.00 2.71
368 369 5.536554 AGTTTATGTTCTCGCTCATTGTG 57.463 39.130 0.00 0.00 0.00 3.33
369 370 5.237815 AGTTTATGTTCTCGCTCATTGTGA 58.762 37.500 0.00 0.00 0.00 3.58
370 371 5.120830 AGTTTATGTTCTCGCTCATTGTGAC 59.879 40.000 0.00 0.00 0.00 3.67
371 372 1.795768 TGTTCTCGCTCATTGTGACC 58.204 50.000 0.00 0.00 0.00 4.02
372 373 1.069978 TGTTCTCGCTCATTGTGACCA 59.930 47.619 0.00 0.00 0.00 4.02
373 374 1.728971 GTTCTCGCTCATTGTGACCAG 59.271 52.381 0.00 0.00 0.00 4.00
374 375 0.390340 TCTCGCTCATTGTGACCAGC 60.390 55.000 0.00 0.00 0.00 4.85
375 376 1.364626 CTCGCTCATTGTGACCAGCC 61.365 60.000 0.00 0.00 0.00 4.85
376 377 1.376424 CGCTCATTGTGACCAGCCT 60.376 57.895 0.00 0.00 0.00 4.58
377 378 0.957395 CGCTCATTGTGACCAGCCTT 60.957 55.000 0.00 0.00 0.00 4.35
378 379 1.675714 CGCTCATTGTGACCAGCCTTA 60.676 52.381 0.00 0.00 0.00 2.69
379 380 2.012673 GCTCATTGTGACCAGCCTTAG 58.987 52.381 0.00 0.00 0.00 2.18
380 381 2.616510 GCTCATTGTGACCAGCCTTAGT 60.617 50.000 0.00 0.00 0.00 2.24
381 382 3.369471 GCTCATTGTGACCAGCCTTAGTA 60.369 47.826 0.00 0.00 0.00 1.82
382 383 4.437239 CTCATTGTGACCAGCCTTAGTAG 58.563 47.826 0.00 0.00 0.00 2.57
383 384 3.838317 TCATTGTGACCAGCCTTAGTAGT 59.162 43.478 0.00 0.00 0.00 2.73
384 385 5.020795 TCATTGTGACCAGCCTTAGTAGTA 58.979 41.667 0.00 0.00 0.00 1.82
395 396 6.607600 CCAGCCTTAGTAGTATATATGAGGCA 59.392 42.308 15.47 0.00 41.39 4.75
413 414 4.009675 AGGCAAAGTCGAAGCATATTCAA 58.990 39.130 0.00 0.00 0.00 2.69
425 426 6.628856 CGAAGCATATTCAAATTAGGTTCGTG 59.371 38.462 20.75 6.49 41.49 4.35
434 435 4.431416 AATTAGGTTCGTGGCATATCCA 57.569 40.909 0.00 0.00 44.18 3.41
447 448 5.870706 TGGCATATCCATTGTACGGAATAA 58.129 37.500 0.00 0.00 40.72 1.40
466 467 0.323629 ATCAACGGGGTTCATGACGT 59.676 50.000 0.00 0.00 41.88 4.34
470 482 2.351276 GGGGTTCATGACGTGCCT 59.649 61.111 0.00 0.00 0.00 4.75
496 508 2.509548 ACTGGCATGCTACTTTCCCATA 59.490 45.455 18.92 0.00 0.00 2.74
527 580 1.825090 TTCATGTGATGCAGACCCAC 58.175 50.000 0.00 0.00 0.00 4.61
535 588 2.962421 TGATGCAGACCCACGATGTATA 59.038 45.455 0.00 0.00 0.00 1.47
536 589 3.578282 TGATGCAGACCCACGATGTATAT 59.422 43.478 0.00 0.00 0.00 0.86
537 590 4.770010 TGATGCAGACCCACGATGTATATA 59.230 41.667 0.00 0.00 0.00 0.86
538 591 4.514781 TGCAGACCCACGATGTATATAC 57.485 45.455 5.89 5.89 0.00 1.47
539 592 4.149598 TGCAGACCCACGATGTATATACT 58.850 43.478 13.89 0.00 0.00 2.12
540 593 5.318630 TGCAGACCCACGATGTATATACTA 58.681 41.667 13.89 1.51 0.00 1.82
541 594 5.949952 TGCAGACCCACGATGTATATACTAT 59.050 40.000 13.89 6.07 0.00 2.12
542 595 6.095021 TGCAGACCCACGATGTATATACTATC 59.905 42.308 13.89 12.74 0.00 2.08
543 596 6.095021 GCAGACCCACGATGTATATACTATCA 59.905 42.308 13.89 0.00 0.00 2.15
544 597 7.201830 GCAGACCCACGATGTATATACTATCAT 60.202 40.741 13.89 0.00 0.00 2.45
545 598 8.131731 CAGACCCACGATGTATATACTATCATG 58.868 40.741 13.89 12.31 0.00 3.07
546 599 7.834681 AGACCCACGATGTATATACTATCATGT 59.165 37.037 13.89 7.05 0.00 3.21
547 600 9.117183 GACCCACGATGTATATACTATCATGTA 57.883 37.037 13.89 0.00 0.00 2.29
548 601 8.900781 ACCCACGATGTATATACTATCATGTAC 58.099 37.037 13.89 0.00 0.00 2.90
549 602 8.899771 CCCACGATGTATATACTATCATGTACA 58.100 37.037 13.89 0.00 37.06 2.90
605 669 4.232221 CAAAACTTGGAGATGCATGTGTC 58.768 43.478 2.46 0.00 0.00 3.67
606 670 3.430042 AACTTGGAGATGCATGTGTCT 57.570 42.857 2.46 0.00 0.00 3.41
607 671 4.558226 AACTTGGAGATGCATGTGTCTA 57.442 40.909 2.46 0.00 0.00 2.59
608 672 4.767578 ACTTGGAGATGCATGTGTCTAT 57.232 40.909 2.46 0.00 0.00 1.98
609 673 4.449131 ACTTGGAGATGCATGTGTCTATG 58.551 43.478 2.46 1.30 0.00 2.23
610 674 4.080695 ACTTGGAGATGCATGTGTCTATGT 60.081 41.667 2.46 1.92 0.00 2.29
611 675 4.063998 TGGAGATGCATGTGTCTATGTC 57.936 45.455 2.46 0.00 0.00 3.06
656 720 1.850377 TTGTTGCGCAGTTTGGAATG 58.150 45.000 11.31 0.00 0.00 2.67
657 721 1.028130 TGTTGCGCAGTTTGGAATGA 58.972 45.000 11.31 0.00 0.00 2.57
672 739 0.737219 AATGAGAATGCAAGGCGAGC 59.263 50.000 0.00 0.00 0.00 5.03
676 743 0.321919 AGAATGCAAGGCGAGCTCAA 60.322 50.000 15.40 0.00 0.00 3.02
722 792 3.176728 CTCGTGAGGAGCAGGTCTA 57.823 57.895 0.00 0.00 35.63 2.59
735 805 3.133721 AGCAGGTCTAGTCAACATGATCC 59.866 47.826 0.00 0.00 30.25 3.36
736 806 3.118629 GCAGGTCTAGTCAACATGATCCA 60.119 47.826 0.00 0.00 30.25 3.41
737 807 4.444022 GCAGGTCTAGTCAACATGATCCAT 60.444 45.833 0.00 0.00 30.25 3.41
738 808 5.295950 CAGGTCTAGTCAACATGATCCATC 58.704 45.833 0.00 0.00 30.25 3.51
898 970 3.081409 TTCCTCCCGCAGCTACCC 61.081 66.667 0.00 0.00 0.00 3.69
932 1009 2.100605 GCAGGCAGCAAGTAACTACT 57.899 50.000 0.00 0.00 44.79 2.57
933 1010 2.003301 GCAGGCAGCAAGTAACTACTC 58.997 52.381 0.00 0.00 44.79 2.59
983 1096 2.100989 AGAAACTAGCCTACCTCCGTG 58.899 52.381 0.00 0.00 0.00 4.94
1021 1155 1.339610 CCTCCTCGCTGTAGATCAAGG 59.660 57.143 0.00 0.00 0.00 3.61
1058 1193 2.279120 GAGCAGCTCATCGACCGG 60.279 66.667 18.17 0.00 0.00 5.28
1120 1290 3.040763 GCAGCGGCGAGGATGATC 61.041 66.667 12.98 0.00 0.00 2.92
1124 1294 2.341543 CGGCGAGGATGATCAGGG 59.658 66.667 0.00 0.00 0.00 4.45
1817 3719 0.620410 TTGATCCCCACCACCGAGAT 60.620 55.000 0.00 0.00 0.00 2.75
1821 3723 2.187946 CCCACCACCGAGATGCTC 59.812 66.667 0.00 0.00 0.00 4.26
1871 3773 4.088762 CACGCGCGCAAGGTCATT 62.089 61.111 32.58 3.21 38.28 2.57
2006 4059 3.357203 CAACCACTCTGCTACCTCTAGA 58.643 50.000 0.00 0.00 0.00 2.43
2007 4060 3.007473 ACCACTCTGCTACCTCTAGAC 57.993 52.381 0.00 0.00 0.00 2.59
2008 4061 2.578940 ACCACTCTGCTACCTCTAGACT 59.421 50.000 0.00 0.00 0.00 3.24
2009 4062 3.211045 CCACTCTGCTACCTCTAGACTC 58.789 54.545 0.00 0.00 0.00 3.36
2010 4063 3.118038 CCACTCTGCTACCTCTAGACTCT 60.118 52.174 0.00 0.00 0.00 3.24
2011 4064 4.101898 CCACTCTGCTACCTCTAGACTCTA 59.898 50.000 0.00 0.00 0.00 2.43
2012 4065 5.297547 CACTCTGCTACCTCTAGACTCTAG 58.702 50.000 6.74 6.74 0.00 2.43
2013 4066 4.966805 ACTCTGCTACCTCTAGACTCTAGT 59.033 45.833 12.06 0.00 0.00 2.57
2014 4067 5.163343 ACTCTGCTACCTCTAGACTCTAGTG 60.163 48.000 12.06 9.85 0.00 2.74
2015 4068 4.717778 TCTGCTACCTCTAGACTCTAGTGT 59.282 45.833 12.06 12.35 0.00 3.55
2016 4069 5.026038 TGCTACCTCTAGACTCTAGTGTC 57.974 47.826 15.59 15.59 37.23 3.67
2017 4070 4.470304 TGCTACCTCTAGACTCTAGTGTCA 59.530 45.833 23.12 10.85 39.27 3.58
2018 4071 5.054477 GCTACCTCTAGACTCTAGTGTCAG 58.946 50.000 23.12 17.78 39.27 3.51
2019 4072 5.395990 GCTACCTCTAGACTCTAGTGTCAGT 60.396 48.000 23.12 14.88 39.27 3.41
2020 4073 4.839121 ACCTCTAGACTCTAGTGTCAGTG 58.161 47.826 23.12 17.43 39.27 3.66
2021 4074 4.287585 ACCTCTAGACTCTAGTGTCAGTGT 59.712 45.833 23.12 15.98 39.27 3.55
2022 4075 4.634004 CCTCTAGACTCTAGTGTCAGTGTG 59.366 50.000 23.12 13.74 39.27 3.82
2023 4076 4.004314 TCTAGACTCTAGTGTCAGTGTGC 58.996 47.826 23.12 0.00 39.27 4.57
2024 4077 1.537638 AGACTCTAGTGTCAGTGTGCG 59.462 52.381 23.12 0.00 39.27 5.34
2028 4081 1.131771 CTAGTGTCAGTGTGCGTGTG 58.868 55.000 0.00 0.00 0.00 3.82
2029 4082 0.874175 TAGTGTCAGTGTGCGTGTGC 60.874 55.000 0.00 0.00 43.20 4.57
2067 4120 7.757173 CGTGTGGATTTAGAGATGATCGATATT 59.243 37.037 0.00 0.00 0.00 1.28
2116 4185 9.661187 CAGATATGAAGATACTTTTGTGATTGC 57.339 33.333 0.00 0.00 0.00 3.56
2258 4329 4.101741 GGAAACCTCATCTGCACTAGGTAT 59.898 45.833 5.27 0.00 41.51 2.73
2261 4332 5.991933 ACCTCATCTGCACTAGGTATATG 57.008 43.478 3.34 0.00 40.57 1.78
2272 4343 8.293699 TGCACTAGGTATATGTATATGTCTGG 57.706 38.462 0.00 0.00 0.00 3.86
2292 4363 3.068024 TGGACATTTTGACACCTTTCAGC 59.932 43.478 0.00 0.00 0.00 4.26
2298 4369 3.281727 TTGACACCTTTCAGCTCACTT 57.718 42.857 0.00 0.00 0.00 3.16
2299 4370 2.838736 TGACACCTTTCAGCTCACTTC 58.161 47.619 0.00 0.00 0.00 3.01
2312 4384 7.043961 TCAGCTCACTTCGTTTCATATAGAT 57.956 36.000 0.00 0.00 0.00 1.98
2348 4420 3.643792 ACAAGCTGTTTCACCTAGAGAGT 59.356 43.478 0.00 0.00 0.00 3.24
2349 4421 3.951775 AGCTGTTTCACCTAGAGAGTG 57.048 47.619 0.00 0.00 36.54 3.51
2363 4435 2.891580 AGAGAGTGCCGAGTAACAGAAA 59.108 45.455 0.00 0.00 0.00 2.52
2466 6283 7.975616 ACATTTCATGTTGTTAATGCCATCTAC 59.024 33.333 0.00 0.00 41.63 2.59
2470 6287 5.172687 TGTTGTTAATGCCATCTACCTGA 57.827 39.130 0.00 0.00 0.00 3.86
2476 6293 2.787473 TGCCATCTACCTGACCTTTG 57.213 50.000 0.00 0.00 0.00 2.77
2492 6309 2.129555 TTTGCTCAGGGAGGTCAGCC 62.130 60.000 0.00 0.00 0.00 4.85
2508 6325 1.744741 GCCAGGAGCTGAACAGAGC 60.745 63.158 5.97 0.00 38.99 4.09
2551 6368 2.427245 CCCCAGATCGGTCGCTTCT 61.427 63.158 0.00 0.00 0.00 2.85
2714 6537 1.002257 AATGCCACGGATCACAGCA 60.002 52.632 0.00 0.00 37.94 4.41
2821 6644 2.032634 GCCTTCGCACGATGGTTCA 61.033 57.895 21.54 0.00 40.37 3.18
2823 6646 1.421485 CTTCGCACGATGGTTCAGC 59.579 57.895 0.00 0.00 0.00 4.26
2824 6647 1.005037 TTCGCACGATGGTTCAGCT 60.005 52.632 0.00 0.00 0.00 4.24
2826 6649 1.014044 TCGCACGATGGTTCAGCTTC 61.014 55.000 0.00 0.00 0.00 3.86
2827 6650 1.421485 GCACGATGGTTCAGCTTCG 59.579 57.895 11.46 11.46 37.60 3.79
2829 6652 0.670546 CACGATGGTTCAGCTTCGGT 60.671 55.000 15.90 2.79 35.98 4.69
2831 6654 1.480954 ACGATGGTTCAGCTTCGGTAT 59.519 47.619 15.90 0.00 35.98 2.73
2832 6655 1.860950 CGATGGTTCAGCTTCGGTATG 59.139 52.381 6.44 0.00 0.00 2.39
2833 6656 2.738643 CGATGGTTCAGCTTCGGTATGT 60.739 50.000 6.44 0.00 0.00 2.29
2849 6672 3.056607 GGTATGTGCAGGCATTTCAAACT 60.057 43.478 0.00 0.00 0.00 2.66
2854 6677 4.340666 TGTGCAGGCATTTCAAACTAAGAA 59.659 37.500 0.00 0.00 0.00 2.52
2893 6717 4.871933 ACAATGTGGTGAAATTTCCTCC 57.128 40.909 15.48 16.58 0.00 4.30
2981 7158 6.018588 TCGGCGTGGTATAAAATATTCTTGTG 60.019 38.462 6.85 0.00 0.00 3.33
3059 7236 0.753262 AAGACGCGATTATGGAGGCT 59.247 50.000 15.93 0.00 0.00 4.58
3156 7339 7.442364 CGTCCATGATGGTAAGTTTCTGAATAT 59.558 37.037 11.87 0.00 39.03 1.28
3333 7516 2.436824 GAGCAGGAAAGGCGGGAC 60.437 66.667 0.00 0.00 36.08 4.46
3859 8042 0.685097 CTTGGAGGACCGTCTTGGAA 59.315 55.000 0.00 0.00 42.00 3.53
4164 8347 3.775654 GTCCTCCTCCGCCTGGTG 61.776 72.222 0.00 0.00 36.30 4.17
4560 8753 5.490159 TGCAGTGATGAATAACTGATGTGA 58.510 37.500 11.40 0.00 45.43 3.58
4561 8754 6.117488 TGCAGTGATGAATAACTGATGTGAT 58.883 36.000 11.40 0.00 45.43 3.06
4674 8867 2.431771 CGTCGCCGATGACCAACA 60.432 61.111 0.00 0.00 35.40 3.33
4774 8967 2.574369 TCACCTTCCATCGGTACCAATT 59.426 45.455 13.54 0.00 32.37 2.32
4782 8975 6.928348 TCCATCGGTACCAATTATAGATGT 57.072 37.500 13.54 0.00 34.05 3.06
4854 9113 5.212194 TCATGCGTTTGAAAAGCTAGAAAC 58.788 37.500 16.15 0.00 0.00 2.78
4875 9134 2.489329 CGATCACATGGTTTTGCTTCCT 59.511 45.455 0.00 0.00 0.00 3.36
4922 9181 3.189287 AGAGCAATGTACAAAGAAAGGCG 59.811 43.478 0.00 0.00 0.00 5.52
4929 9188 4.295051 TGTACAAAGAAAGGCGCAATTTC 58.705 39.130 22.69 22.69 37.00 2.17
4938 9197 2.101783 AGGCGCAATTTCCATGATGAA 58.898 42.857 10.83 0.00 0.00 2.57
4979 9238 0.595588 ATTGCACCGTCGATTTTGCA 59.404 45.000 12.23 12.23 43.11 4.08
5056 9315 2.676342 GGACGATCGCCAAAAACTATGT 59.324 45.455 16.60 0.00 0.00 2.29
5074 9333 3.728076 TGTAGTCTGACGCATAATCCC 57.272 47.619 1.52 0.00 0.00 3.85
5097 9356 0.107831 AACTGGTGCTTACCGCTTGA 59.892 50.000 0.00 0.00 40.11 3.02
5174 9434 4.534103 TGGGTGCTTAAAATTTTAGCCCAT 59.466 37.500 24.75 2.37 38.57 4.00
5192 9459 2.069273 CATTTGTGGGACTCAGACGTC 58.931 52.381 7.70 7.70 31.85 4.34
5223 9490 3.206639 ACCTTTTCCCCCTCTTTTCTTCA 59.793 43.478 0.00 0.00 0.00 3.02
5234 9501 4.874966 CCTCTTTTCTTCATCGCATCTCTT 59.125 41.667 0.00 0.00 0.00 2.85
5245 9512 1.862827 CGCATCTCTTCATTGCATCGA 59.137 47.619 0.00 0.00 36.15 3.59
5252 9519 0.810648 TTCATTGCATCGAAGTGCCC 59.189 50.000 8.46 0.00 44.43 5.36
5253 9520 1.063006 CATTGCATCGAAGTGCCCG 59.937 57.895 8.46 0.00 44.43 6.13
5255 9522 3.899981 TTGCATCGAAGTGCCCGCT 62.900 57.895 8.46 0.00 44.43 5.52
5256 9523 3.869272 GCATCGAAGTGCCCGCTG 61.869 66.667 0.00 0.00 39.18 5.18
5257 9524 3.869272 CATCGAAGTGCCCGCTGC 61.869 66.667 0.00 0.00 41.77 5.25
5278 10121 1.010238 CGTGCACAAACGCATCACA 60.010 52.632 18.64 0.00 45.26 3.58
5293 10136 4.221342 GCATCACACACACAACATACTTG 58.779 43.478 0.00 0.00 0.00 3.16
5321 10164 2.118313 TTAGCGGTTCCCCTAAAAGC 57.882 50.000 0.00 0.00 0.00 3.51
5409 10253 9.178758 ACCAATAATCTCTCAAAAATGTAGGTC 57.821 33.333 0.00 0.00 0.00 3.85
5420 10264 9.667107 CTCAAAAATGTAGGTCTGTATTCCTTA 57.333 33.333 0.00 0.00 35.51 2.69
5498 10345 2.677902 CGTAGGCTGTTGTGTCCATGAT 60.678 50.000 0.00 0.00 0.00 2.45
5499 10346 3.430236 CGTAGGCTGTTGTGTCCATGATA 60.430 47.826 0.00 0.00 0.00 2.15
5500 10347 3.719268 AGGCTGTTGTGTCCATGATAA 57.281 42.857 0.00 0.00 0.00 1.75
5512 10359 6.545666 TGTGTCCATGATAACAACTTTCTTGT 59.454 34.615 0.00 0.00 0.00 3.16
5553 10400 4.016444 TCTGCACAATCTTAAATCCCCAC 58.984 43.478 0.00 0.00 0.00 4.61
5577 10424 4.903054 AGTGCTTCTCAATCTTGACATCA 58.097 39.130 0.00 0.00 32.90 3.07
5604 10451 2.487762 GCTTTTGATTCGGTGTCATGGA 59.512 45.455 0.00 0.00 0.00 3.41
5607 10454 2.385013 TGATTCGGTGTCATGGACAG 57.615 50.000 0.00 0.00 43.57 3.51
5615 10462 3.330267 GGTGTCATGGACAGTTCTTCTC 58.670 50.000 0.00 0.00 43.57 2.87
5616 10463 3.244215 GGTGTCATGGACAGTTCTTCTCA 60.244 47.826 0.00 0.00 43.57 3.27
5620 10467 6.016777 GTGTCATGGACAGTTCTTCTCAAAAT 60.017 38.462 0.00 0.00 43.57 1.82
5646 10493 0.521735 GCACTTGGGATTTGGTCGAC 59.478 55.000 7.13 7.13 0.00 4.20
5665 10512 0.606096 CGATGGTGTGAGTGGGTGTA 59.394 55.000 0.00 0.00 0.00 2.90
5702 10549 2.223502 CGCTTCTACTCGCATCCTTGTA 60.224 50.000 0.00 0.00 0.00 2.41
5788 10635 1.829349 GCTGATGCTCTTCGCCATCG 61.829 60.000 0.00 0.00 38.05 3.84
5812 10659 5.739161 GTCATCGACACATTTAATTCCTTGC 59.261 40.000 0.00 0.00 32.09 4.01
5816 10663 4.379813 CGACACATTTAATTCCTTGCTGCT 60.380 41.667 0.00 0.00 0.00 4.24
5817 10664 5.473039 GACACATTTAATTCCTTGCTGCTT 58.527 37.500 0.00 0.00 0.00 3.91
5840 10687 1.136828 ACTTTGCACACCAGGTCCTA 58.863 50.000 0.00 0.00 0.00 2.94
5855 10702 2.202837 CTACGCCGCCTTACCACC 60.203 66.667 0.00 0.00 0.00 4.61
5860 10707 4.483243 CCGCCTTACCACCGCCAT 62.483 66.667 0.00 0.00 0.00 4.40
5921 10768 2.483014 TTTGACCATCCGAATCCGTT 57.517 45.000 0.00 0.00 0.00 4.44
5922 10769 2.483014 TTGACCATCCGAATCCGTTT 57.517 45.000 0.00 0.00 0.00 3.60
5927 10774 1.933853 CCATCCGAATCCGTTTGAGTC 59.066 52.381 0.00 0.00 34.75 3.36
5959 10806 1.953559 TGAGCTTTTGAGCGTGTTCT 58.046 45.000 0.00 0.00 40.27 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.704076 CCTCCAAACCCTCCAATCCA 59.296 55.000 0.00 0.00 0.00 3.41
1 2 0.999712 TCCTCCAAACCCTCCAATCC 59.000 55.000 0.00 0.00 0.00 3.01
2 3 4.519906 TTATCCTCCAAACCCTCCAATC 57.480 45.455 0.00 0.00 0.00 2.67
3 4 6.606241 TTATTATCCTCCAAACCCTCCAAT 57.394 37.500 0.00 0.00 0.00 3.16
4 5 6.410222 TTTATTATCCTCCAAACCCTCCAA 57.590 37.500 0.00 0.00 0.00 3.53
5 6 6.372931 CATTTATTATCCTCCAAACCCTCCA 58.627 40.000 0.00 0.00 0.00 3.86
6 7 5.243954 GCATTTATTATCCTCCAAACCCTCC 59.756 44.000 0.00 0.00 0.00 4.30
7 8 6.071320 AGCATTTATTATCCTCCAAACCCTC 58.929 40.000 0.00 0.00 0.00 4.30
8 9 6.030727 AGCATTTATTATCCTCCAAACCCT 57.969 37.500 0.00 0.00 0.00 4.34
9 10 5.833131 TGAGCATTTATTATCCTCCAAACCC 59.167 40.000 0.00 0.00 0.00 4.11
10 11 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
13 14 9.866655 AGTTATTGAGCATTTATTATCCTCCAA 57.133 29.630 0.00 0.00 0.00 3.53
46 47 8.204836 GCTTGGATCCAAATACTAAAGAGACTA 58.795 37.037 26.87 0.00 35.33 2.59
47 48 7.051000 GCTTGGATCCAAATACTAAAGAGACT 58.949 38.462 26.87 0.00 35.33 3.24
48 49 6.823689 TGCTTGGATCCAAATACTAAAGAGAC 59.176 38.462 26.87 8.83 35.33 3.36
49 50 6.957631 TGCTTGGATCCAAATACTAAAGAGA 58.042 36.000 26.87 1.15 35.33 3.10
50 51 7.255381 CCATGCTTGGATCCAAATACTAAAGAG 60.255 40.741 26.87 12.80 46.92 2.85
51 52 6.547141 CCATGCTTGGATCCAAATACTAAAGA 59.453 38.462 26.87 1.90 46.92 2.52
52 53 6.239120 CCCATGCTTGGATCCAAATACTAAAG 60.239 42.308 26.87 14.21 46.92 1.85
53 54 5.598005 CCCATGCTTGGATCCAAATACTAAA 59.402 40.000 26.87 8.81 46.92 1.85
54 55 5.139727 CCCATGCTTGGATCCAAATACTAA 58.860 41.667 26.87 10.11 46.92 2.24
55 56 4.167892 ACCCATGCTTGGATCCAAATACTA 59.832 41.667 26.87 12.31 46.92 1.82
56 57 3.052642 ACCCATGCTTGGATCCAAATACT 60.053 43.478 26.87 10.16 46.92 2.12
57 58 3.068590 CACCCATGCTTGGATCCAAATAC 59.931 47.826 26.87 19.00 46.92 1.89
58 59 3.053019 TCACCCATGCTTGGATCCAAATA 60.053 43.478 26.87 18.63 46.92 1.40
59 60 2.112998 CACCCATGCTTGGATCCAAAT 58.887 47.619 26.87 16.27 46.92 2.32
60 61 1.076841 TCACCCATGCTTGGATCCAAA 59.923 47.619 26.87 14.63 46.92 3.28
61 62 0.703488 TCACCCATGCTTGGATCCAA 59.297 50.000 25.53 25.53 46.92 3.53
62 63 0.256752 CTCACCCATGCTTGGATCCA 59.743 55.000 19.85 11.44 46.92 3.41
63 64 0.548031 TCTCACCCATGCTTGGATCC 59.452 55.000 19.85 4.20 46.92 3.36
64 65 1.211457 AGTCTCACCCATGCTTGGATC 59.789 52.381 19.85 3.99 46.92 3.36
65 66 1.293062 AGTCTCACCCATGCTTGGAT 58.707 50.000 19.85 0.00 46.92 3.41
66 67 1.833630 CTAGTCTCACCCATGCTTGGA 59.166 52.381 19.85 0.00 46.92 3.53
67 68 1.745141 GCTAGTCTCACCCATGCTTGG 60.745 57.143 11.68 11.68 43.23 3.61
68 69 1.065926 TGCTAGTCTCACCCATGCTTG 60.066 52.381 0.00 0.00 0.00 4.01
69 70 1.279496 TGCTAGTCTCACCCATGCTT 58.721 50.000 0.00 0.00 0.00 3.91
70 71 1.209019 CTTGCTAGTCTCACCCATGCT 59.791 52.381 0.00 0.00 0.00 3.79
71 72 1.065854 ACTTGCTAGTCTCACCCATGC 60.066 52.381 0.00 0.00 0.00 4.06
72 73 3.340814 AACTTGCTAGTCTCACCCATG 57.659 47.619 0.07 0.00 31.99 3.66
73 74 4.373156 AAAACTTGCTAGTCTCACCCAT 57.627 40.909 0.07 0.00 31.99 4.00
74 75 3.857157 AAAACTTGCTAGTCTCACCCA 57.143 42.857 0.07 0.00 31.99 4.51
75 76 4.895961 ACTAAAACTTGCTAGTCTCACCC 58.104 43.478 0.07 0.00 31.99 4.61
76 77 4.930405 GGACTAAAACTTGCTAGTCTCACC 59.070 45.833 0.07 0.00 42.42 4.02
77 78 4.930405 GGGACTAAAACTTGCTAGTCTCAC 59.070 45.833 0.07 0.00 42.76 3.51
78 79 5.148651 GGGACTAAAACTTGCTAGTCTCA 57.851 43.478 0.07 0.00 42.76 3.27
79 80 4.930405 GTGGGACTAAAACTTGCTAGTCTC 59.070 45.833 0.07 1.39 43.29 3.36
80 81 4.593634 AGTGGGACTAAAACTTGCTAGTCT 59.406 41.667 0.07 0.00 42.42 3.24
81 82 4.895961 AGTGGGACTAAAACTTGCTAGTC 58.104 43.478 0.07 0.62 42.17 2.59
82 83 4.976540 AGTGGGACTAAAACTTGCTAGT 57.023 40.909 0.00 0.00 35.68 2.57
83 84 6.038997 AGTAGTGGGACTAAAACTTGCTAG 57.961 41.667 0.00 0.00 31.62 3.42
84 85 6.429521 AAGTAGTGGGACTAAAACTTGCTA 57.570 37.500 0.00 0.00 31.62 3.49
85 86 4.976540 AGTAGTGGGACTAAAACTTGCT 57.023 40.909 0.00 0.00 31.62 3.91
86 87 6.387041 AAAAGTAGTGGGACTAAAACTTGC 57.613 37.500 0.00 0.00 31.62 4.01
87 88 8.672823 ACTAAAAGTAGTGGGACTAAAACTTG 57.327 34.615 0.00 0.00 39.20 3.16
88 89 8.488668 TGACTAAAAGTAGTGGGACTAAAACTT 58.511 33.333 0.00 0.00 40.82 2.66
89 90 8.026396 TGACTAAAAGTAGTGGGACTAAAACT 57.974 34.615 0.00 0.00 40.82 2.66
90 91 8.718734 CATGACTAAAAGTAGTGGGACTAAAAC 58.281 37.037 0.00 0.00 40.82 2.43
91 92 7.881232 CCATGACTAAAAGTAGTGGGACTAAAA 59.119 37.037 0.00 0.00 40.82 1.52
92 93 7.391620 CCATGACTAAAAGTAGTGGGACTAAA 58.608 38.462 0.00 0.00 40.82 1.85
93 94 6.942976 CCATGACTAAAAGTAGTGGGACTAA 58.057 40.000 0.00 0.00 40.82 2.24
94 95 6.540438 CCATGACTAAAAGTAGTGGGACTA 57.460 41.667 0.00 0.00 40.82 2.59
95 96 5.422214 CCATGACTAAAAGTAGTGGGACT 57.578 43.478 0.00 0.00 40.82 3.85
98 99 3.521937 TCCCCATGACTAAAAGTAGTGGG 59.478 47.826 16.71 16.71 45.46 4.61
99 100 4.384208 CCTCCCCATGACTAAAAGTAGTGG 60.384 50.000 0.00 4.14 40.82 4.00
100 101 4.469945 TCCTCCCCATGACTAAAAGTAGTG 59.530 45.833 0.00 0.00 40.82 2.74
101 102 4.695606 TCCTCCCCATGACTAAAAGTAGT 58.304 43.478 0.00 0.00 43.56 2.73
102 103 5.189934 AGTTCCTCCCCATGACTAAAAGTAG 59.810 44.000 0.00 0.00 0.00 2.57
103 104 5.098663 AGTTCCTCCCCATGACTAAAAGTA 58.901 41.667 0.00 0.00 0.00 2.24
104 105 3.916989 AGTTCCTCCCCATGACTAAAAGT 59.083 43.478 0.00 0.00 0.00 2.66
105 106 4.576330 AGTTCCTCCCCATGACTAAAAG 57.424 45.455 0.00 0.00 0.00 2.27
106 107 5.045140 CCTAAGTTCCTCCCCATGACTAAAA 60.045 44.000 0.00 0.00 0.00 1.52
107 108 4.473559 CCTAAGTTCCTCCCCATGACTAAA 59.526 45.833 0.00 0.00 0.00 1.85
108 109 4.037927 CCTAAGTTCCTCCCCATGACTAA 58.962 47.826 0.00 0.00 0.00 2.24
109 110 3.273886 TCCTAAGTTCCTCCCCATGACTA 59.726 47.826 0.00 0.00 0.00 2.59
110 111 2.045885 TCCTAAGTTCCTCCCCATGACT 59.954 50.000 0.00 0.00 0.00 3.41
111 112 2.436173 CTCCTAAGTTCCTCCCCATGAC 59.564 54.545 0.00 0.00 0.00 3.06
112 113 2.045885 ACTCCTAAGTTCCTCCCCATGA 59.954 50.000 0.00 0.00 28.74 3.07
113 114 2.482494 ACTCCTAAGTTCCTCCCCATG 58.518 52.381 0.00 0.00 28.74 3.66
114 115 2.972153 ACTCCTAAGTTCCTCCCCAT 57.028 50.000 0.00 0.00 28.74 4.00
115 116 3.181404 TGTTACTCCTAAGTTCCTCCCCA 60.181 47.826 0.00 0.00 36.92 4.96
116 117 3.447950 TGTTACTCCTAAGTTCCTCCCC 58.552 50.000 0.00 0.00 36.92 4.81
117 118 4.715297 TGATGTTACTCCTAAGTTCCTCCC 59.285 45.833 0.00 0.00 36.92 4.30
118 119 5.187186 TGTGATGTTACTCCTAAGTTCCTCC 59.813 44.000 0.00 0.00 36.92 4.30
119 120 6.282199 TGTGATGTTACTCCTAAGTTCCTC 57.718 41.667 0.00 0.00 36.92 3.71
120 121 6.875972 ATGTGATGTTACTCCTAAGTTCCT 57.124 37.500 0.00 0.00 36.92 3.36
121 122 7.783042 AGTATGTGATGTTACTCCTAAGTTCC 58.217 38.462 0.00 0.00 36.92 3.62
122 123 9.303537 GAAGTATGTGATGTTACTCCTAAGTTC 57.696 37.037 0.00 0.00 36.92 3.01
123 124 8.812972 TGAAGTATGTGATGTTACTCCTAAGTT 58.187 33.333 0.00 0.00 36.92 2.66
124 125 8.362464 TGAAGTATGTGATGTTACTCCTAAGT 57.638 34.615 0.00 0.00 39.66 2.24
125 126 9.823647 ATTGAAGTATGTGATGTTACTCCTAAG 57.176 33.333 0.00 0.00 0.00 2.18
128 129 8.758829 TGTATTGAAGTATGTGATGTTACTCCT 58.241 33.333 0.00 0.00 0.00 3.69
129 130 8.942338 TGTATTGAAGTATGTGATGTTACTCC 57.058 34.615 0.00 0.00 0.00 3.85
131 132 9.944376 AGTTGTATTGAAGTATGTGATGTTACT 57.056 29.630 0.00 0.00 0.00 2.24
134 135 9.897744 CAAAGTTGTATTGAAGTATGTGATGTT 57.102 29.630 0.00 0.00 0.00 2.71
135 136 8.023128 GCAAAGTTGTATTGAAGTATGTGATGT 58.977 33.333 0.00 0.00 0.00 3.06
136 137 8.239314 AGCAAAGTTGTATTGAAGTATGTGATG 58.761 33.333 0.00 0.00 0.00 3.07
137 138 8.340618 AGCAAAGTTGTATTGAAGTATGTGAT 57.659 30.769 0.00 0.00 0.00 3.06
138 139 7.744087 AGCAAAGTTGTATTGAAGTATGTGA 57.256 32.000 0.00 0.00 0.00 3.58
144 145 8.190784 GCCATATAAGCAAAGTTGTATTGAAGT 58.809 33.333 0.00 0.00 0.00 3.01
145 146 8.190122 TGCCATATAAGCAAAGTTGTATTGAAG 58.810 33.333 0.00 0.00 37.28 3.02
146 147 7.973388 GTGCCATATAAGCAAAGTTGTATTGAA 59.027 33.333 2.62 0.00 43.02 2.69
147 148 7.121907 TGTGCCATATAAGCAAAGTTGTATTGA 59.878 33.333 2.62 0.00 43.02 2.57
148 149 7.257003 TGTGCCATATAAGCAAAGTTGTATTG 58.743 34.615 2.62 0.00 43.02 1.90
149 150 7.403312 TGTGCCATATAAGCAAAGTTGTATT 57.597 32.000 2.62 0.00 43.02 1.89
150 151 7.587037 ATGTGCCATATAAGCAAAGTTGTAT 57.413 32.000 2.62 0.00 43.02 2.29
151 152 8.690203 ATATGTGCCATATAAGCAAAGTTGTA 57.310 30.769 2.62 0.00 43.02 2.41
152 153 5.920193 ATGTGCCATATAAGCAAAGTTGT 57.080 34.783 2.62 0.00 43.02 3.32
153 154 8.876275 AAATATGTGCCATATAAGCAAAGTTG 57.124 30.769 7.77 0.00 43.02 3.16
166 167 8.636213 CCTCTTTCTTCATTAAATATGTGCCAT 58.364 33.333 0.00 0.00 0.00 4.40
167 168 7.615365 ACCTCTTTCTTCATTAAATATGTGCCA 59.385 33.333 0.00 0.00 0.00 4.92
168 169 7.917505 CACCTCTTTCTTCATTAAATATGTGCC 59.082 37.037 0.00 0.00 0.00 5.01
169 170 7.433425 GCACCTCTTTCTTCATTAAATATGTGC 59.567 37.037 0.00 0.00 35.67 4.57
170 171 8.680903 AGCACCTCTTTCTTCATTAAATATGTG 58.319 33.333 0.00 0.00 0.00 3.21
171 172 8.814038 AGCACCTCTTTCTTCATTAAATATGT 57.186 30.769 0.00 0.00 0.00 2.29
172 173 9.512435 CAAGCACCTCTTTCTTCATTAAATATG 57.488 33.333 0.00 0.00 31.27 1.78
173 174 9.247861 ACAAGCACCTCTTTCTTCATTAAATAT 57.752 29.630 0.00 0.00 31.27 1.28
174 175 8.514594 CACAAGCACCTCTTTCTTCATTAAATA 58.485 33.333 0.00 0.00 31.27 1.40
175 176 7.373493 CACAAGCACCTCTTTCTTCATTAAAT 58.627 34.615 0.00 0.00 31.27 1.40
176 177 6.239008 CCACAAGCACCTCTTTCTTCATTAAA 60.239 38.462 0.00 0.00 31.27 1.52
177 178 5.241506 CCACAAGCACCTCTTTCTTCATTAA 59.758 40.000 0.00 0.00 31.27 1.40
178 179 4.761739 CCACAAGCACCTCTTTCTTCATTA 59.238 41.667 0.00 0.00 31.27 1.90
179 180 3.571401 CCACAAGCACCTCTTTCTTCATT 59.429 43.478 0.00 0.00 31.27 2.57
180 181 3.152341 CCACAAGCACCTCTTTCTTCAT 58.848 45.455 0.00 0.00 31.27 2.57
181 182 2.092429 ACCACAAGCACCTCTTTCTTCA 60.092 45.455 0.00 0.00 31.27 3.02
182 183 2.576615 ACCACAAGCACCTCTTTCTTC 58.423 47.619 0.00 0.00 31.27 2.87
183 184 2.736670 ACCACAAGCACCTCTTTCTT 57.263 45.000 0.00 0.00 31.27 2.52
184 185 3.136626 AGTTACCACAAGCACCTCTTTCT 59.863 43.478 0.00 0.00 31.27 2.52
185 186 3.477530 AGTTACCACAAGCACCTCTTTC 58.522 45.455 0.00 0.00 31.27 2.62
186 187 3.577805 AGTTACCACAAGCACCTCTTT 57.422 42.857 0.00 0.00 31.27 2.52
187 188 3.557264 GCTAGTTACCACAAGCACCTCTT 60.557 47.826 0.00 0.00 35.05 2.85
188 189 2.028020 GCTAGTTACCACAAGCACCTCT 60.028 50.000 0.00 0.00 35.05 3.69
189 190 2.028020 AGCTAGTTACCACAAGCACCTC 60.028 50.000 0.00 0.00 37.44 3.85
190 191 1.978580 AGCTAGTTACCACAAGCACCT 59.021 47.619 0.00 0.00 37.44 4.00
191 192 2.474410 AGCTAGTTACCACAAGCACC 57.526 50.000 0.00 0.00 37.44 5.01
192 193 4.566987 ACTTAGCTAGTTACCACAAGCAC 58.433 43.478 0.00 0.00 37.44 4.40
193 194 4.884668 ACTTAGCTAGTTACCACAAGCA 57.115 40.909 0.00 0.00 37.44 3.91
202 203 6.377996 TGATGTTCCGGTAACTTAGCTAGTTA 59.622 38.462 0.00 10.09 45.22 2.24
204 205 4.708421 TGATGTTCCGGTAACTTAGCTAGT 59.292 41.667 0.00 0.00 38.99 2.57
205 206 5.041940 GTGATGTTCCGGTAACTTAGCTAG 58.958 45.833 0.00 0.00 38.99 3.42
206 207 4.463539 TGTGATGTTCCGGTAACTTAGCTA 59.536 41.667 0.00 0.00 38.99 3.32
207 208 3.259876 TGTGATGTTCCGGTAACTTAGCT 59.740 43.478 0.00 0.00 38.99 3.32
208 209 3.370061 GTGTGATGTTCCGGTAACTTAGC 59.630 47.826 0.00 0.00 38.99 3.09
209 210 4.387862 GTGTGTGATGTTCCGGTAACTTAG 59.612 45.833 0.00 0.00 38.99 2.18
210 211 4.039488 AGTGTGTGATGTTCCGGTAACTTA 59.961 41.667 0.00 0.00 38.99 2.24
211 212 3.135994 GTGTGTGATGTTCCGGTAACTT 58.864 45.455 0.00 3.15 38.99 2.66
212 213 2.367567 AGTGTGTGATGTTCCGGTAACT 59.632 45.455 0.00 0.00 38.99 2.24
213 214 2.735134 GAGTGTGTGATGTTCCGGTAAC 59.265 50.000 0.00 5.56 38.67 2.50
214 215 2.289195 GGAGTGTGTGATGTTCCGGTAA 60.289 50.000 0.00 0.00 0.00 2.85
215 216 1.274167 GGAGTGTGTGATGTTCCGGTA 59.726 52.381 0.00 0.00 0.00 4.02
216 217 0.034896 GGAGTGTGTGATGTTCCGGT 59.965 55.000 0.00 0.00 0.00 5.28
217 218 0.034756 TGGAGTGTGTGATGTTCCGG 59.965 55.000 0.00 0.00 0.00 5.14
218 219 1.800586 CTTGGAGTGTGTGATGTTCCG 59.199 52.381 0.00 0.00 0.00 4.30
219 220 3.126001 TCTTGGAGTGTGTGATGTTCC 57.874 47.619 0.00 0.00 0.00 3.62
220 221 4.335315 TGTTTCTTGGAGTGTGTGATGTTC 59.665 41.667 0.00 0.00 0.00 3.18
221 222 4.269183 TGTTTCTTGGAGTGTGTGATGTT 58.731 39.130 0.00 0.00 0.00 2.71
222 223 3.884895 TGTTTCTTGGAGTGTGTGATGT 58.115 40.909 0.00 0.00 0.00 3.06
223 224 4.898829 TTGTTTCTTGGAGTGTGTGATG 57.101 40.909 0.00 0.00 0.00 3.07
224 225 5.132502 TCATTGTTTCTTGGAGTGTGTGAT 58.867 37.500 0.00 0.00 0.00 3.06
225 226 4.522114 TCATTGTTTCTTGGAGTGTGTGA 58.478 39.130 0.00 0.00 0.00 3.58
226 227 4.336433 ACTCATTGTTTCTTGGAGTGTGTG 59.664 41.667 0.00 0.00 37.43 3.82
227 228 4.526970 ACTCATTGTTTCTTGGAGTGTGT 58.473 39.130 0.00 0.00 37.43 3.72
228 229 4.818546 AGACTCATTGTTTCTTGGAGTGTG 59.181 41.667 0.00 0.00 38.82 3.82
229 230 5.041191 AGACTCATTGTTTCTTGGAGTGT 57.959 39.130 0.00 0.00 38.82 3.55
230 231 8.954950 ATATAGACTCATTGTTTCTTGGAGTG 57.045 34.615 0.00 0.00 38.82 3.51
231 232 8.207545 GGATATAGACTCATTGTTTCTTGGAGT 58.792 37.037 0.00 0.00 41.22 3.85
232 233 8.428063 AGGATATAGACTCATTGTTTCTTGGAG 58.572 37.037 0.00 0.00 0.00 3.86
233 234 8.324191 AGGATATAGACTCATTGTTTCTTGGA 57.676 34.615 0.00 0.00 0.00 3.53
253 254 9.936759 TCATGCAACGATGTATTTATTAGGATA 57.063 29.630 0.00 0.00 28.42 2.59
254 255 8.721478 GTCATGCAACGATGTATTTATTAGGAT 58.279 33.333 0.00 0.00 28.42 3.24
255 256 7.713073 TGTCATGCAACGATGTATTTATTAGGA 59.287 33.333 0.00 0.00 28.42 2.94
256 257 7.798516 GTGTCATGCAACGATGTATTTATTAGG 59.201 37.037 0.00 0.00 28.42 2.69
257 258 8.551205 AGTGTCATGCAACGATGTATTTATTAG 58.449 33.333 0.00 0.00 28.42 1.73
258 259 8.432110 AGTGTCATGCAACGATGTATTTATTA 57.568 30.769 0.00 0.00 28.42 0.98
259 260 7.320443 AGTGTCATGCAACGATGTATTTATT 57.680 32.000 0.00 0.00 28.42 1.40
260 261 6.925610 AGTGTCATGCAACGATGTATTTAT 57.074 33.333 0.00 0.00 28.42 1.40
261 262 6.814146 TGTAGTGTCATGCAACGATGTATTTA 59.186 34.615 0.00 0.00 28.42 1.40
262 263 5.641636 TGTAGTGTCATGCAACGATGTATTT 59.358 36.000 0.00 0.00 28.42 1.40
263 264 5.175127 TGTAGTGTCATGCAACGATGTATT 58.825 37.500 0.00 0.00 28.42 1.89
264 265 4.754322 TGTAGTGTCATGCAACGATGTAT 58.246 39.130 0.00 0.00 31.41 2.29
265 266 4.181309 TGTAGTGTCATGCAACGATGTA 57.819 40.909 0.00 0.00 0.00 2.29
266 267 3.038788 TGTAGTGTCATGCAACGATGT 57.961 42.857 0.00 0.00 0.00 3.06
267 268 5.043248 TCTATGTAGTGTCATGCAACGATG 58.957 41.667 0.00 0.00 0.00 3.84
268 269 5.262588 TCTATGTAGTGTCATGCAACGAT 57.737 39.130 0.00 0.00 0.00 3.73
269 270 4.712122 TCTATGTAGTGTCATGCAACGA 57.288 40.909 0.00 0.00 0.00 3.85
270 271 4.805719 ACATCTATGTAGTGTCATGCAACG 59.194 41.667 0.00 0.00 39.68 4.10
271 272 6.238211 GGAACATCTATGTAGTGTCATGCAAC 60.238 42.308 0.00 0.00 40.80 4.17
272 273 5.817296 GGAACATCTATGTAGTGTCATGCAA 59.183 40.000 0.00 0.00 40.80 4.08
273 274 5.129320 AGGAACATCTATGTAGTGTCATGCA 59.871 40.000 0.00 0.00 40.80 3.96
274 275 5.605534 AGGAACATCTATGTAGTGTCATGC 58.394 41.667 0.00 0.00 40.80 4.06
275 276 7.148641 GGTAGGAACATCTATGTAGTGTCATG 58.851 42.308 0.00 0.00 40.80 3.07
276 277 6.267928 GGGTAGGAACATCTATGTAGTGTCAT 59.732 42.308 0.00 0.00 40.80 3.06
277 278 5.597182 GGGTAGGAACATCTATGTAGTGTCA 59.403 44.000 0.00 0.00 40.80 3.58
278 279 5.597182 TGGGTAGGAACATCTATGTAGTGTC 59.403 44.000 0.00 0.00 40.80 3.67
279 280 5.363005 GTGGGTAGGAACATCTATGTAGTGT 59.637 44.000 0.00 0.00 40.80 3.55
280 281 5.598830 AGTGGGTAGGAACATCTATGTAGTG 59.401 44.000 0.00 0.00 40.80 2.74
281 282 5.778542 AGTGGGTAGGAACATCTATGTAGT 58.221 41.667 0.00 0.00 40.80 2.73
282 283 7.093727 CCATAGTGGGTAGGAACATCTATGTAG 60.094 44.444 0.00 0.00 35.14 2.74
283 284 6.724441 CCATAGTGGGTAGGAACATCTATGTA 59.276 42.308 0.00 0.00 35.14 2.29
284 285 5.544176 CCATAGTGGGTAGGAACATCTATGT 59.456 44.000 0.00 0.00 36.83 2.29
285 286 5.780282 TCCATAGTGGGTAGGAACATCTATG 59.220 44.000 0.00 0.00 38.32 2.23
286 287 5.977533 TCCATAGTGGGTAGGAACATCTAT 58.022 41.667 0.00 0.00 38.32 1.98
287 288 5.394738 CTCCATAGTGGGTAGGAACATCTA 58.605 45.833 0.00 0.00 38.32 1.98
288 289 4.227197 CTCCATAGTGGGTAGGAACATCT 58.773 47.826 0.00 0.00 38.32 2.90
289 290 3.325135 CCTCCATAGTGGGTAGGAACATC 59.675 52.174 0.00 0.00 38.32 3.06
290 291 3.311402 ACCTCCATAGTGGGTAGGAACAT 60.311 47.826 9.90 0.00 38.32 2.71
291 292 2.045326 ACCTCCATAGTGGGTAGGAACA 59.955 50.000 9.90 0.00 38.32 3.18
292 293 2.760581 ACCTCCATAGTGGGTAGGAAC 58.239 52.381 9.90 0.00 38.32 3.62
293 294 4.630382 TTACCTCCATAGTGGGTAGGAA 57.370 45.455 9.90 0.12 38.32 3.36
294 295 4.845530 ATTACCTCCATAGTGGGTAGGA 57.154 45.455 9.90 0.00 38.32 2.94
295 296 5.842328 TGTTATTACCTCCATAGTGGGTAGG 59.158 44.000 2.99 2.99 38.32 3.18
296 297 6.989155 TGTTATTACCTCCATAGTGGGTAG 57.011 41.667 0.00 0.00 38.32 3.18
297 298 8.236643 ACTATGTTATTACCTCCATAGTGGGTA 58.763 37.037 9.63 0.00 44.96 3.69
298 299 7.080353 ACTATGTTATTACCTCCATAGTGGGT 58.920 38.462 9.63 0.00 44.96 4.51
299 300 7.455008 AGACTATGTTATTACCTCCATAGTGGG 59.545 40.741 14.01 0.00 46.02 4.61
300 301 8.423906 AGACTATGTTATTACCTCCATAGTGG 57.576 38.462 14.01 0.00 46.02 4.00
303 304 9.191479 CCCTAGACTATGTTATTACCTCCATAG 57.809 40.741 0.00 0.00 41.50 2.23
304 305 8.908095 TCCCTAGACTATGTTATTACCTCCATA 58.092 37.037 0.00 0.00 0.00 2.74
305 306 7.776745 TCCCTAGACTATGTTATTACCTCCAT 58.223 38.462 0.00 0.00 0.00 3.41
306 307 7.170554 TCCCTAGACTATGTTATTACCTCCA 57.829 40.000 0.00 0.00 0.00 3.86
307 308 8.488308 TTTCCCTAGACTATGTTATTACCTCC 57.512 38.462 0.00 0.00 0.00 4.30
308 309 9.930693 CATTTCCCTAGACTATGTTATTACCTC 57.069 37.037 0.00 0.00 0.00 3.85
309 310 9.448587 ACATTTCCCTAGACTATGTTATTACCT 57.551 33.333 0.00 0.00 28.04 3.08
310 311 9.490379 CACATTTCCCTAGACTATGTTATTACC 57.510 37.037 0.00 0.00 29.39 2.85
315 316 9.263446 ACTTACACATTTCCCTAGACTATGTTA 57.737 33.333 0.00 0.00 29.39 2.41
316 317 8.147244 ACTTACACATTTCCCTAGACTATGTT 57.853 34.615 0.00 0.00 29.39 2.71
317 318 7.735326 ACTTACACATTTCCCTAGACTATGT 57.265 36.000 0.00 0.00 31.07 2.29
318 319 9.530633 GTAACTTACACATTTCCCTAGACTATG 57.469 37.037 0.00 0.00 0.00 2.23
319 320 9.490083 AGTAACTTACACATTTCCCTAGACTAT 57.510 33.333 1.79 0.00 0.00 2.12
320 321 8.890410 AGTAACTTACACATTTCCCTAGACTA 57.110 34.615 1.79 0.00 0.00 2.59
321 322 7.793948 AGTAACTTACACATTTCCCTAGACT 57.206 36.000 1.79 0.00 0.00 3.24
322 323 8.747471 ACTAGTAACTTACACATTTCCCTAGAC 58.253 37.037 0.00 0.00 0.00 2.59
323 324 8.890410 ACTAGTAACTTACACATTTCCCTAGA 57.110 34.615 0.00 0.00 0.00 2.43
324 325 9.939802 AAACTAGTAACTTACACATTTCCCTAG 57.060 33.333 0.00 0.00 0.00 3.02
333 334 9.616634 CGAGAACATAAACTAGTAACTTACACA 57.383 33.333 0.00 0.00 0.00 3.72
334 335 8.582096 GCGAGAACATAAACTAGTAACTTACAC 58.418 37.037 0.00 0.00 0.00 2.90
335 336 8.517878 AGCGAGAACATAAACTAGTAACTTACA 58.482 33.333 0.00 0.00 0.00 2.41
336 337 8.908172 AGCGAGAACATAAACTAGTAACTTAC 57.092 34.615 0.00 0.00 0.00 2.34
337 338 8.733458 TGAGCGAGAACATAAACTAGTAACTTA 58.267 33.333 0.00 0.00 0.00 2.24
338 339 7.600065 TGAGCGAGAACATAAACTAGTAACTT 58.400 34.615 0.00 0.00 0.00 2.66
339 340 7.154435 TGAGCGAGAACATAAACTAGTAACT 57.846 36.000 0.00 0.00 0.00 2.24
340 341 7.988904 ATGAGCGAGAACATAAACTAGTAAC 57.011 36.000 0.00 0.00 0.00 2.50
341 342 8.033038 ACAATGAGCGAGAACATAAACTAGTAA 58.967 33.333 0.00 0.00 0.00 2.24
342 343 7.488150 CACAATGAGCGAGAACATAAACTAGTA 59.512 37.037 0.00 0.00 0.00 1.82
343 344 6.311445 CACAATGAGCGAGAACATAAACTAGT 59.689 38.462 0.00 0.00 0.00 2.57
344 345 6.531594 TCACAATGAGCGAGAACATAAACTAG 59.468 38.462 0.00 0.00 0.00 2.57
345 346 6.310467 GTCACAATGAGCGAGAACATAAACTA 59.690 38.462 0.00 0.00 0.00 2.24
346 347 5.120830 GTCACAATGAGCGAGAACATAAACT 59.879 40.000 0.00 0.00 0.00 2.66
347 348 5.316770 GTCACAATGAGCGAGAACATAAAC 58.683 41.667 0.00 0.00 0.00 2.01
348 349 4.391830 GGTCACAATGAGCGAGAACATAAA 59.608 41.667 0.00 0.00 35.04 1.40
349 350 3.932710 GGTCACAATGAGCGAGAACATAA 59.067 43.478 0.00 0.00 35.04 1.90
350 351 3.521560 GGTCACAATGAGCGAGAACATA 58.478 45.455 0.00 0.00 35.04 2.29
351 352 2.350522 GGTCACAATGAGCGAGAACAT 58.649 47.619 0.00 0.00 35.04 2.71
352 353 1.795768 GGTCACAATGAGCGAGAACA 58.204 50.000 0.00 0.00 35.04 3.18
359 360 2.012673 CTAAGGCTGGTCACAATGAGC 58.987 52.381 1.08 1.08 44.54 4.26
360 361 3.340814 ACTAAGGCTGGTCACAATGAG 57.659 47.619 0.00 0.00 0.00 2.90
361 362 3.838317 ACTACTAAGGCTGGTCACAATGA 59.162 43.478 0.00 0.00 0.00 2.57
362 363 4.207891 ACTACTAAGGCTGGTCACAATG 57.792 45.455 0.00 0.00 0.00 2.82
363 364 7.857404 ATATACTACTAAGGCTGGTCACAAT 57.143 36.000 0.00 0.00 0.00 2.71
364 365 8.803235 CATATATACTACTAAGGCTGGTCACAA 58.197 37.037 0.00 0.00 0.00 3.33
365 366 8.168058 TCATATATACTACTAAGGCTGGTCACA 58.832 37.037 0.00 0.00 0.00 3.58
366 367 8.577048 TCATATATACTACTAAGGCTGGTCAC 57.423 38.462 0.00 0.00 0.00 3.67
367 368 7.834681 CCTCATATATACTACTAAGGCTGGTCA 59.165 40.741 0.00 0.00 0.00 4.02
368 369 7.201839 GCCTCATATATACTACTAAGGCTGGTC 60.202 44.444 2.90 0.00 43.67 4.02
369 370 6.608002 GCCTCATATATACTACTAAGGCTGGT 59.392 42.308 2.90 0.00 43.67 4.00
370 371 6.607600 TGCCTCATATATACTACTAAGGCTGG 59.392 42.308 10.99 0.00 46.44 4.85
371 372 7.646548 TGCCTCATATATACTACTAAGGCTG 57.353 40.000 10.99 0.00 46.44 4.85
372 373 8.666129 TTTGCCTCATATATACTACTAAGGCT 57.334 34.615 10.99 0.00 46.44 4.58
373 374 8.532819 ACTTTGCCTCATATATACTACTAAGGC 58.467 37.037 3.16 3.16 46.48 4.35
375 376 9.776158 CGACTTTGCCTCATATATACTACTAAG 57.224 37.037 0.00 0.00 0.00 2.18
376 377 9.511272 TCGACTTTGCCTCATATATACTACTAA 57.489 33.333 0.00 0.00 0.00 2.24
377 378 9.511272 TTCGACTTTGCCTCATATATACTACTA 57.489 33.333 0.00 0.00 0.00 1.82
378 379 7.997773 TCGACTTTGCCTCATATATACTACT 57.002 36.000 0.00 0.00 0.00 2.57
379 380 7.273815 GCTTCGACTTTGCCTCATATATACTAC 59.726 40.741 0.00 0.00 0.00 2.73
380 381 7.039993 TGCTTCGACTTTGCCTCATATATACTA 60.040 37.037 0.00 0.00 0.00 1.82
381 382 6.159988 GCTTCGACTTTGCCTCATATATACT 58.840 40.000 0.00 0.00 0.00 2.12
382 383 5.926542 TGCTTCGACTTTGCCTCATATATAC 59.073 40.000 0.00 0.00 0.00 1.47
383 384 6.096673 TGCTTCGACTTTGCCTCATATATA 57.903 37.500 0.00 0.00 0.00 0.86
384 385 4.960938 TGCTTCGACTTTGCCTCATATAT 58.039 39.130 0.00 0.00 0.00 0.86
395 396 8.281212 ACCTAATTTGAATATGCTTCGACTTT 57.719 30.769 0.00 0.00 0.00 2.66
413 414 4.431416 TGGATATGCCACGAACCTAATT 57.569 40.909 0.00 0.00 43.33 1.40
425 426 6.597672 TGATTATTCCGTACAATGGATATGCC 59.402 38.462 0.00 0.00 32.39 4.40
434 435 4.131596 CCCCGTTGATTATTCCGTACAAT 58.868 43.478 0.00 0.00 0.00 2.71
447 448 0.323629 ACGTCATGAACCCCGTTGAT 59.676 50.000 0.00 0.00 0.00 2.57
470 482 4.199310 GGAAAGTAGCATGCCAGTATCAA 58.801 43.478 15.66 0.00 0.00 2.57
496 508 3.904800 TCACATGAATCCCACATACGT 57.095 42.857 0.00 0.00 0.00 3.57
535 588 8.478775 ACACCACATACTGTACATGATAGTAT 57.521 34.615 0.00 7.50 41.71 2.12
536 589 7.778382 AGACACCACATACTGTACATGATAGTA 59.222 37.037 0.00 5.38 36.33 1.82
537 590 6.607600 AGACACCACATACTGTACATGATAGT 59.392 38.462 0.00 3.11 33.45 2.12
538 591 7.043961 AGACACCACATACTGTACATGATAG 57.956 40.000 0.00 0.00 0.00 2.08
539 592 7.418337 AAGACACCACATACTGTACATGATA 57.582 36.000 0.00 0.00 0.00 2.15
540 593 5.939764 AGACACCACATACTGTACATGAT 57.060 39.130 0.00 0.00 0.00 2.45
541 594 5.621329 CGAAGACACCACATACTGTACATGA 60.621 44.000 0.00 0.00 0.00 3.07
542 595 4.562789 CGAAGACACCACATACTGTACATG 59.437 45.833 0.00 0.00 0.00 3.21
543 596 4.461431 TCGAAGACACCACATACTGTACAT 59.539 41.667 0.00 0.00 0.00 2.29
544 597 3.822167 TCGAAGACACCACATACTGTACA 59.178 43.478 0.00 0.00 0.00 2.90
545 598 4.430137 TCGAAGACACCACATACTGTAC 57.570 45.455 0.00 0.00 0.00 2.90
546 599 4.676986 GCATCGAAGACACCACATACTGTA 60.677 45.833 0.00 0.00 42.51 2.74
547 600 3.849911 CATCGAAGACACCACATACTGT 58.150 45.455 0.00 0.00 42.51 3.55
548 601 2.604914 GCATCGAAGACACCACATACTG 59.395 50.000 0.00 0.00 42.51 2.74
549 602 2.233676 TGCATCGAAGACACCACATACT 59.766 45.455 0.00 0.00 42.51 2.12
561 614 3.794475 GCCAAGGAAATCATGCATCGAAG 60.794 47.826 0.00 0.00 0.00 3.79
605 669 2.493713 GGCACACCGTAGAGACATAG 57.506 55.000 0.00 0.00 0.00 2.23
626 690 2.458951 TGCGCAACAAAGATCAAACAC 58.541 42.857 8.16 0.00 0.00 3.32
627 691 2.098934 ACTGCGCAACAAAGATCAAACA 59.901 40.909 13.05 0.00 0.00 2.83
633 697 1.680735 TCCAAACTGCGCAACAAAGAT 59.319 42.857 13.05 0.00 0.00 2.40
656 720 0.742281 TGAGCTCGCCTTGCATTCTC 60.742 55.000 9.64 0.00 0.00 2.87
657 721 0.321919 TTGAGCTCGCCTTGCATTCT 60.322 50.000 9.64 0.00 0.00 2.40
672 739 5.514279 CACTGCTTAGGTTTGAACTTTGAG 58.486 41.667 0.00 0.00 0.00 3.02
676 743 2.623416 GGCACTGCTTAGGTTTGAACTT 59.377 45.455 0.00 0.00 0.00 2.66
722 792 3.460712 TGGATGGATGGATCATGTTGACT 59.539 43.478 0.00 0.00 0.00 3.41
735 805 2.038689 CTGGACTCTGGATGGATGGATG 59.961 54.545 0.00 0.00 0.00 3.51
736 806 2.336891 CTGGACTCTGGATGGATGGAT 58.663 52.381 0.00 0.00 0.00 3.41
737 807 1.798626 CTGGACTCTGGATGGATGGA 58.201 55.000 0.00 0.00 0.00 3.41
738 808 0.108207 GCTGGACTCTGGATGGATGG 59.892 60.000 0.00 0.00 0.00 3.51
824 894 1.006102 CAGTTGGAAGACGGTCGCT 60.006 57.895 1.89 0.00 0.00 4.93
898 970 1.337167 GCCTGCACCTAAAAGCCAAAG 60.337 52.381 0.00 0.00 0.00 2.77
928 1005 0.739561 GCGACTGGTGGTAGGAGTAG 59.260 60.000 0.00 0.00 0.00 2.57
929 1006 0.038599 TGCGACTGGTGGTAGGAGTA 59.961 55.000 0.00 0.00 0.00 2.59
930 1007 1.228769 TGCGACTGGTGGTAGGAGT 60.229 57.895 0.00 0.00 0.00 3.85
931 1008 1.215647 GTGCGACTGGTGGTAGGAG 59.784 63.158 0.00 0.00 0.00 3.69
932 1009 1.228769 AGTGCGACTGGTGGTAGGA 60.229 57.895 0.00 0.00 0.00 2.94
933 1010 1.215647 GAGTGCGACTGGTGGTAGG 59.784 63.158 0.00 0.00 0.00 3.18
1003 1137 1.063942 TCCCTTGATCTACAGCGAGGA 60.064 52.381 0.00 0.00 0.00 3.71
1004 1138 1.403814 TCCCTTGATCTACAGCGAGG 58.596 55.000 0.00 0.00 0.00 4.63
1005 1139 2.223923 CCTTCCCTTGATCTACAGCGAG 60.224 54.545 0.00 0.00 0.00 5.03
1006 1140 1.757118 CCTTCCCTTGATCTACAGCGA 59.243 52.381 0.00 0.00 0.00 4.93
1007 1141 1.757118 TCCTTCCCTTGATCTACAGCG 59.243 52.381 0.00 0.00 0.00 5.18
1009 1143 5.508825 CGATCTTCCTTCCCTTGATCTACAG 60.509 48.000 0.00 0.00 33.46 2.74
1010 1144 4.342378 CGATCTTCCTTCCCTTGATCTACA 59.658 45.833 0.00 0.00 33.46 2.74
1011 1145 4.585162 TCGATCTTCCTTCCCTTGATCTAC 59.415 45.833 0.00 0.00 33.46 2.59
1012 1146 4.804597 TCGATCTTCCTTCCCTTGATCTA 58.195 43.478 0.00 0.00 33.46 1.98
1021 1155 4.367450 CTCACTTGATCGATCTTCCTTCC 58.633 47.826 25.02 0.00 0.00 3.46
1058 1193 4.518211 CCATAATGATCCTCCTTGCTTGAC 59.482 45.833 0.00 0.00 0.00 3.18
1822 3724 0.659417 TCGAACGCGACTGTTCAGTC 60.659 55.000 15.93 19.32 46.77 3.51
1823 3725 1.357690 TCGAACGCGACTGTTCAGT 59.642 52.632 15.93 5.08 46.77 3.41
2006 4059 1.001268 CACGCACACTGACACTAGAGT 60.001 52.381 0.00 0.00 0.00 3.24
2007 4060 1.001268 ACACGCACACTGACACTAGAG 60.001 52.381 0.00 0.00 0.00 2.43
2008 4061 1.029681 ACACGCACACTGACACTAGA 58.970 50.000 0.00 0.00 0.00 2.43
2009 4062 1.131771 CACACGCACACTGACACTAG 58.868 55.000 0.00 0.00 0.00 2.57
2010 4063 0.874175 GCACACGCACACTGACACTA 60.874 55.000 0.00 0.00 38.36 2.74
2011 4064 2.173669 GCACACGCACACTGACACT 61.174 57.895 0.00 0.00 38.36 3.55
2012 4065 2.324477 GCACACGCACACTGACAC 59.676 61.111 0.00 0.00 38.36 3.67
2013 4066 3.261216 CGCACACGCACACTGACA 61.261 61.111 0.00 0.00 38.40 3.58
2014 4067 3.261951 ACGCACACGCACACTGAC 61.262 61.111 0.00 0.00 45.53 3.51
2015 4068 3.261216 CACGCACACGCACACTGA 61.261 61.111 0.00 0.00 45.53 3.41
2016 4069 3.563088 ACACGCACACGCACACTG 61.563 61.111 0.00 0.00 45.53 3.66
2017 4070 3.563088 CACACGCACACGCACACT 61.563 61.111 0.00 0.00 45.53 3.55
2067 4120 7.128418 TCTGACTAGGGAATACTCCAGTAACTA 59.872 40.741 0.00 0.00 44.51 2.24
2076 4134 8.871629 TCTTCATATCTGACTAGGGAATACTC 57.128 38.462 0.00 0.00 0.00 2.59
2083 4141 9.703892 CAAAAGTATCTTCATATCTGACTAGGG 57.296 37.037 0.00 0.00 0.00 3.53
2116 4185 4.024641 CACACACCATATCCATCACAATCG 60.025 45.833 0.00 0.00 0.00 3.34
2170 4241 1.012486 CACCGTCACCGCCTTCTTAC 61.012 60.000 0.00 0.00 0.00 2.34
2292 4363 8.651588 GGCAATATCTATATGAAACGAAGTGAG 58.348 37.037 0.00 0.00 45.00 3.51
2312 4384 6.648879 AACAGCTTGTTTTTCTAGGCAATA 57.351 33.333 0.00 0.00 37.26 1.90
2327 4399 3.993081 CACTCTCTAGGTGAAACAGCTTG 59.007 47.826 8.66 7.30 42.44 4.01
2328 4400 3.556004 GCACTCTCTAGGTGAAACAGCTT 60.556 47.826 8.66 0.00 42.44 3.74
2329 4401 2.028567 GCACTCTCTAGGTGAAACAGCT 60.029 50.000 8.43 8.43 44.66 4.24
2340 4412 3.271729 TCTGTTACTCGGCACTCTCTAG 58.728 50.000 0.00 0.00 0.00 2.43
2348 4420 2.029290 GGTCTCTTTCTGTTACTCGGCA 60.029 50.000 0.00 0.00 0.00 5.69
2349 4421 2.029290 TGGTCTCTTTCTGTTACTCGGC 60.029 50.000 0.00 0.00 0.00 5.54
2363 4435 9.614792 GTGGTATTATTACTGATTTTGGTCTCT 57.385 33.333 0.00 0.00 0.00 3.10
2470 6287 0.768221 TGACCTCCCTGAGCAAAGGT 60.768 55.000 4.20 0.00 44.74 3.50
2476 6293 3.005539 TGGCTGACCTCCCTGAGC 61.006 66.667 0.00 0.00 36.63 4.26
2492 6309 0.607112 TCTGCTCTGTTCAGCTCCTG 59.393 55.000 0.00 0.00 40.39 3.86
2528 6345 2.764128 GACCGATCTGGGGCTGGA 60.764 66.667 8.20 0.00 44.64 3.86
2590 6407 3.387091 TCACCGTCCCCGTGGATG 61.387 66.667 0.00 0.00 44.28 3.51
2591 6408 3.387947 GTCACCGTCCCCGTGGAT 61.388 66.667 0.00 0.00 44.28 3.41
2727 6550 1.964608 TTCAGCGGCTCCCTCATGAG 61.965 60.000 16.24 16.24 35.40 2.90
2821 6644 1.450312 GCCTGCACATACCGAAGCT 60.450 57.895 0.00 0.00 0.00 3.74
2823 6646 1.382522 AATGCCTGCACATACCGAAG 58.617 50.000 0.00 0.00 0.00 3.79
2824 6647 1.742831 GAAATGCCTGCACATACCGAA 59.257 47.619 0.00 0.00 0.00 4.30
2826 6649 1.093972 TGAAATGCCTGCACATACCG 58.906 50.000 0.00 0.00 0.00 4.02
2827 6650 3.056607 AGTTTGAAATGCCTGCACATACC 60.057 43.478 0.00 0.00 0.00 2.73
2829 6652 5.709631 TCTTAGTTTGAAATGCCTGCACATA 59.290 36.000 0.00 0.00 0.00 2.29
2831 6654 3.888323 TCTTAGTTTGAAATGCCTGCACA 59.112 39.130 0.00 0.00 0.00 4.57
2832 6655 4.503741 TCTTAGTTTGAAATGCCTGCAC 57.496 40.909 0.00 0.00 0.00 4.57
2833 6656 5.726980 ATTCTTAGTTTGAAATGCCTGCA 57.273 34.783 0.00 0.00 0.00 4.41
2929 6753 1.327690 ACACGATCGTAGCCCATGGT 61.328 55.000 22.26 9.15 0.00 3.55
2981 7158 3.181461 CCTCCTCCTGACAATACCATCAC 60.181 52.174 0.00 0.00 0.00 3.06
2989 7166 1.919600 GCCAGCCTCCTCCTGACAAT 61.920 60.000 0.00 0.00 32.03 2.71
3126 7303 1.066430 ACTTACCATCATGGACGCGTT 60.066 47.619 15.53 0.00 40.96 4.84
3156 7339 8.887036 TCGAAGCAAAGCTATCTCATTTATTA 57.113 30.769 0.00 0.00 38.25 0.98
3161 7344 5.363101 TGATCGAAGCAAAGCTATCTCATT 58.637 37.500 0.00 0.00 38.25 2.57
3169 7352 1.795768 TCGTTGATCGAAGCAAAGCT 58.204 45.000 10.79 0.00 45.98 3.74
3333 7516 3.068691 TCGAGAAGGGCGTCCAGG 61.069 66.667 9.71 0.00 34.83 4.45
3336 7519 1.139947 CTTCTCGAGAAGGGCGTCC 59.860 63.158 36.99 0.00 45.79 4.79
3725 7908 3.403057 CCACTGCACGACCGAACG 61.403 66.667 0.00 0.00 39.31 3.95
4300 8483 2.173141 CGCGTCGCAGCATTTCAA 59.827 55.556 18.75 0.00 36.85 2.69
4342 8525 4.537433 ATCCAGAAGCTCGGCCGC 62.537 66.667 23.51 7.56 0.00 6.53
4534 8725 5.235831 ACATCAGTTATTCATCACTGCATCG 59.764 40.000 0.00 0.00 40.33 3.84
4560 8753 1.134280 CCTCATCACCTCCTGCGAAAT 60.134 52.381 0.00 0.00 0.00 2.17
4561 8754 0.250234 CCTCATCACCTCCTGCGAAA 59.750 55.000 0.00 0.00 0.00 3.46
4674 8867 0.909610 TCCTCGGTGGGAAGCTTGAT 60.910 55.000 2.10 0.00 36.20 2.57
4718 8911 1.819632 CCACTCTTGTATGGCGGCC 60.820 63.158 13.32 13.32 0.00 6.13
4782 8975 7.724287 TCATGGTTTGAACAATCTGAATTTCA 58.276 30.769 0.00 0.00 0.00 2.69
4799 8992 5.893255 TCCTGCTAAATGCTAATCATGGTTT 59.107 36.000 0.00 0.00 43.37 3.27
4854 9113 2.489329 AGGAAGCAAAACCATGTGATCG 59.511 45.455 0.00 0.00 0.00 3.69
4875 9134 7.660112 TCTATAAGGACACAAAGAACACGTTA 58.340 34.615 0.00 0.00 0.00 3.18
4929 9188 7.899056 TATTGGTCAATTGCATGTTCATCATGG 60.899 37.037 0.00 0.00 41.37 3.66
4938 9197 4.858850 TCCTCTATTGGTCAATTGCATGT 58.141 39.130 0.00 0.00 32.50 3.21
4942 9201 4.098349 TGCAATCCTCTATTGGTCAATTGC 59.902 41.667 0.00 9.55 44.45 3.56
4979 9238 8.037166 TCGAATCTGCTACAATTGCTCATATAT 58.963 33.333 5.05 0.00 0.00 0.86
4993 9252 5.938322 TCCAAATTTTGTCGAATCTGCTAC 58.062 37.500 8.26 0.00 0.00 3.58
5056 9315 2.578786 TCGGGATTATGCGTCAGACTA 58.421 47.619 0.00 0.00 0.00 2.59
5074 9333 0.928229 GCGGTAAGCACCAGTTATCG 59.072 55.000 0.00 0.00 46.14 2.92
5147 9406 6.432783 GGGCTAAAATTTTAAGCACCCATTTT 59.567 34.615 21.71 0.00 34.82 1.82
5149 9408 5.013599 TGGGCTAAAATTTTAAGCACCCATT 59.986 36.000 23.69 0.00 39.86 3.16
5151 9410 3.904339 TGGGCTAAAATTTTAAGCACCCA 59.096 39.130 23.69 23.69 42.44 4.51
5152 9411 4.545208 TGGGCTAAAATTTTAAGCACCC 57.455 40.909 21.50 21.11 35.29 4.61
5153 9412 6.429692 ACAAATGGGCTAAAATTTTAAGCACC 59.570 34.615 21.50 20.16 0.00 5.01
5174 9434 1.068588 CAGACGTCTGAGTCCCACAAA 59.931 52.381 36.73 0.00 46.59 2.83
5192 9459 1.545651 GGGGGAAAAGGTGTCTCACAG 60.546 57.143 2.41 0.00 35.86 3.66
5223 9490 2.479275 CGATGCAATGAAGAGATGCGAT 59.521 45.455 0.00 0.00 42.91 4.58
5278 10121 3.207265 TGCTCCAAGTATGTTGTGTGT 57.793 42.857 0.00 0.00 0.00 3.72
5293 10136 0.803117 GGAACCGCTAAAGTTGCTCC 59.197 55.000 0.00 0.00 33.27 4.70
5341 10185 4.138290 TGCCTTAATTCGTCAAACCAGAA 58.862 39.130 0.00 0.00 0.00 3.02
5354 10198 6.353429 GGGGATCTGCTAGATATGCCTTAATT 60.353 42.308 0.00 0.00 34.53 1.40
5420 10264 5.072040 CCAACCGAGGCAAGATTATTTTT 57.928 39.130 0.00 0.00 0.00 1.94
5498 10345 5.392165 CGTTTGGTGGACAAGAAAGTTGTTA 60.392 40.000 0.00 0.00 40.82 2.41
5499 10346 4.617298 CGTTTGGTGGACAAGAAAGTTGTT 60.617 41.667 0.00 0.00 40.82 2.83
5500 10347 3.119637 CGTTTGGTGGACAAGAAAGTTGT 60.120 43.478 0.00 0.00 40.82 3.32
5512 10359 0.748450 AAGACGTCTCGTTTGGTGGA 59.252 50.000 20.33 0.00 41.37 4.02
5577 10424 1.206578 CCGAATCAAAAGCACGCGT 59.793 52.632 5.58 5.58 0.00 6.01
5604 10451 4.464008 TGCAGGATTTTGAGAAGAACTGT 58.536 39.130 0.00 0.00 0.00 3.55
5607 10454 3.254166 TGCTGCAGGATTTTGAGAAGAAC 59.746 43.478 17.12 0.00 0.00 3.01
5615 10462 1.337447 CCCAAGTGCTGCAGGATTTTG 60.337 52.381 17.12 19.53 0.00 2.44
5616 10463 0.971386 CCCAAGTGCTGCAGGATTTT 59.029 50.000 17.12 8.93 0.00 1.82
5620 10467 0.112995 AAATCCCAAGTGCTGCAGGA 59.887 50.000 17.12 10.66 0.00 3.86
5646 10493 0.606096 TACACCCACTCACACCATCG 59.394 55.000 0.00 0.00 0.00 3.84
5665 10512 0.689080 AGCGGTGGAGATGAGGATGT 60.689 55.000 0.00 0.00 0.00 3.06
5722 10569 1.679311 GAGCATGTGACACTGGGGA 59.321 57.895 7.20 0.00 0.00 4.81
5788 10635 5.739161 GCAAGGAATTAAATGTGTCGATGAC 59.261 40.000 0.00 0.00 0.00 3.06
5812 10659 2.553602 TGGTGTGCAAAGTATGAAGCAG 59.446 45.455 0.00 0.00 37.72 4.24
5816 10663 3.146066 GACCTGGTGTGCAAAGTATGAA 58.854 45.455 2.82 0.00 0.00 2.57
5817 10664 2.552155 GGACCTGGTGTGCAAAGTATGA 60.552 50.000 2.82 0.00 34.99 2.15
5869 10716 1.226974 GGTGAAGCGCGAGATGCTA 60.227 57.895 12.10 0.00 43.14 3.49
5871 10718 1.709147 ATTGGTGAAGCGCGAGATGC 61.709 55.000 12.10 0.00 41.47 3.91
5906 10753 1.278127 ACTCAAACGGATTCGGATGGT 59.722 47.619 0.00 0.00 41.39 3.55
5921 10768 6.519382 AGCTCATAAATGATCATCGACTCAA 58.481 36.000 9.06 0.00 36.02 3.02
5922 10769 6.094193 AGCTCATAAATGATCATCGACTCA 57.906 37.500 9.06 0.00 36.02 3.41
5927 10774 6.577800 GCTCAAAAGCTCATAAATGATCATCG 59.422 38.462 9.06 0.00 45.55 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.