Multiple sequence alignment - TraesCS5A01G205500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G205500 chr5A 100.000 3956 0 0 1 3956 415319623 415323578 0.000000e+00 7306.0
1 TraesCS5A01G205500 chr5D 90.257 3695 208 65 109 3736 319148382 319144773 0.000000e+00 4689.0
2 TraesCS5A01G205500 chr5D 85.714 70 10 0 3 72 319148609 319148540 1.520000e-09 75.0
3 TraesCS5A01G205500 chr5B 90.899 3582 183 58 226 3732 369264679 369261166 0.000000e+00 4676.0
4 TraesCS5A01G205500 chr5B 94.872 39 2 0 66 104 166366133 166366095 1.190000e-05 62.1
5 TraesCS5A01G205500 chr7A 78.550 331 71 0 2010 2340 178296835 178296505 6.660000e-53 219.0
6 TraesCS5A01G205500 chr7D 77.946 331 73 0 2010 2340 176165923 176166253 1.440000e-49 207.0
7 TraesCS5A01G205500 chr7D 87.302 63 6 2 2694 2755 587155997 587155936 1.970000e-08 71.3
8 TraesCS5A01G205500 chr7B 77.946 331 73 0 2010 2340 141865413 141865083 1.440000e-49 207.0
9 TraesCS5A01G205500 chr7B 87.302 63 6 2 2694 2755 658282025 658281964 1.970000e-08 71.3
10 TraesCS5A01G205500 chr7B 100.000 33 0 0 66 98 157208185 157208217 1.190000e-05 62.1
11 TraesCS5A01G205500 chr1D 76.442 208 37 11 2558 2759 399188677 399188476 6.990000e-18 102.0
12 TraesCS5A01G205500 chr1D 100.000 33 0 0 2609 2641 420856393 420856361 1.190000e-05 62.1
13 TraesCS5A01G205500 chr1B 82.075 106 17 2 2558 2662 535384620 535384516 5.440000e-14 89.8
14 TraesCS5A01G205500 chr1B 81.481 108 15 4 2558 2662 535143681 535143576 2.530000e-12 84.2
15 TraesCS5A01G205500 chr1B 100.000 33 0 0 2609 2641 569561505 569561473 1.190000e-05 62.1
16 TraesCS5A01G205500 chr4B 77.848 158 22 12 2607 2759 375137440 375137291 7.040000e-13 86.1
17 TraesCS5A01G205500 chr4B 97.297 37 1 0 67 103 640459477 640459513 3.300000e-06 63.9
18 TraesCS5A01G205500 chr6D 95.745 47 1 1 2607 2653 470961825 470961780 1.520000e-09 75.0
19 TraesCS5A01G205500 chr6A 95.349 43 2 0 61 103 381087497 381087539 7.090000e-08 69.4
20 TraesCS5A01G205500 chr3B 95.000 40 2 0 65 104 610531821 610531860 3.300000e-06 63.9
21 TraesCS5A01G205500 chr3A 95.000 40 2 0 63 102 686185625 686185586 3.300000e-06 63.9
22 TraesCS5A01G205500 chrUn 97.143 35 1 0 68 102 40528175 40528209 4.270000e-05 60.2
23 TraesCS5A01G205500 chr3D 97.059 34 1 0 62 95 378925826 378925859 1.540000e-04 58.4
24 TraesCS5A01G205500 chr2B 87.234 47 6 0 58 104 711984705 711984751 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G205500 chr5A 415319623 415323578 3955 False 7306 7306 100.0000 1 3956 1 chr5A.!!$F1 3955
1 TraesCS5A01G205500 chr5D 319144773 319148609 3836 True 2382 4689 87.9855 3 3736 2 chr5D.!!$R1 3733
2 TraesCS5A01G205500 chr5B 369261166 369264679 3513 True 4676 4676 90.8990 226 3732 1 chr5B.!!$R2 3506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
795 951 0.117541 TTCCACCCAGGGCTACTACA 59.882 55.0 4.91 0.0 38.24 2.74 F
1749 1905 0.249573 CGCCATTGCCATTGAATCCC 60.250 55.0 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 2020 0.319211 ATGCGACGACGGAAACAGAA 60.319 50.0 5.36 0.0 43.78 3.02 R
3194 3387 0.112995 TCTCCATTTGGCACCTTGCT 59.887 50.0 0.00 0.0 44.28 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.504926 ACACTAATAGACAACTAATTGGGGA 57.495 36.000 0.00 0.00 40.42 4.81
33 34 8.102484 ACACTAATAGACAACTAATTGGGGAT 57.898 34.615 0.00 0.00 40.42 3.85
34 35 7.993183 ACACTAATAGACAACTAATTGGGGATG 59.007 37.037 0.00 0.00 40.42 3.51
35 36 7.445402 CACTAATAGACAACTAATTGGGGATGG 59.555 40.741 0.00 0.00 40.42 3.51
38 39 4.111577 AGACAACTAATTGGGGATGGAGA 58.888 43.478 0.00 0.00 40.42 3.71
40 41 5.911178 AGACAACTAATTGGGGATGGAGATA 59.089 40.000 0.00 0.00 40.42 1.98
43 44 7.006509 ACAACTAATTGGGGATGGAGATAATG 58.993 38.462 0.00 0.00 40.42 1.90
74 75 6.338591 AGGTACTACAGTATTGTACTCCCT 57.661 41.667 9.06 0.00 38.92 4.20
77 78 5.202746 ACTACAGTATTGTACTCCCTCCA 57.797 43.478 0.00 0.00 38.76 3.86
78 79 5.778542 ACTACAGTATTGTACTCCCTCCAT 58.221 41.667 0.00 0.00 38.76 3.41
79 80 5.834204 ACTACAGTATTGTACTCCCTCCATC 59.166 44.000 0.00 0.00 38.76 3.51
80 81 3.967987 ACAGTATTGTACTCCCTCCATCC 59.032 47.826 0.00 0.00 36.76 3.51
81 82 3.325135 CAGTATTGTACTCCCTCCATCCC 59.675 52.174 0.00 0.00 36.76 3.85
82 83 2.587060 ATTGTACTCCCTCCATCCCA 57.413 50.000 0.00 0.00 0.00 4.37
84 85 2.352561 TGTACTCCCTCCATCCCAAA 57.647 50.000 0.00 0.00 0.00 3.28
86 87 3.197983 TGTACTCCCTCCATCCCAAAAT 58.802 45.455 0.00 0.00 0.00 1.82
89 90 4.965283 ACTCCCTCCATCCCAAAATAAA 57.035 40.909 0.00 0.00 0.00 1.40
90 91 5.487861 ACTCCCTCCATCCCAAAATAAAT 57.512 39.130 0.00 0.00 0.00 1.40
91 92 5.211201 ACTCCCTCCATCCCAAAATAAATG 58.789 41.667 0.00 0.00 0.00 2.32
93 94 5.208121 TCCCTCCATCCCAAAATAAATGTC 58.792 41.667 0.00 0.00 0.00 3.06
95 96 5.302823 CCCTCCATCCCAAAATAAATGTCTC 59.697 44.000 0.00 0.00 0.00 3.36
96 97 5.893255 CCTCCATCCCAAAATAAATGTCTCA 59.107 40.000 0.00 0.00 0.00 3.27
97 98 6.380846 CCTCCATCCCAAAATAAATGTCTCAA 59.619 38.462 0.00 0.00 0.00 3.02
98 99 7.070322 CCTCCATCCCAAAATAAATGTCTCAAT 59.930 37.037 0.00 0.00 0.00 2.57
100 101 8.824783 TCCATCCCAAAATAAATGTCTCAATTT 58.175 29.630 0.00 0.00 34.24 1.82
105 106 9.382275 CCCAAAATAAATGTCTCAATTTTAGGG 57.618 33.333 0.00 0.00 35.63 3.53
165 294 0.745468 AGTATTTCGTCGGCCTCTCC 59.255 55.000 0.00 0.00 0.00 3.71
189 318 3.541831 CACGCTCGCGCACGTATT 61.542 61.111 22.42 1.71 41.32 1.89
191 320 2.949678 CGCTCGCGCACGTATTCT 60.950 61.111 8.75 0.00 41.18 2.40
198 327 1.571919 GCGCACGTATTCTTCCTCAT 58.428 50.000 0.30 0.00 0.00 2.90
201 330 2.223829 CGCACGTATTCTTCCTCATCCT 60.224 50.000 0.00 0.00 0.00 3.24
202 331 3.385577 GCACGTATTCTTCCTCATCCTC 58.614 50.000 0.00 0.00 0.00 3.71
203 332 3.181475 GCACGTATTCTTCCTCATCCTCA 60.181 47.826 0.00 0.00 0.00 3.86
204 333 4.680708 GCACGTATTCTTCCTCATCCTCAA 60.681 45.833 0.00 0.00 0.00 3.02
205 334 4.806247 CACGTATTCTTCCTCATCCTCAAC 59.194 45.833 0.00 0.00 0.00 3.18
206 335 4.141914 ACGTATTCTTCCTCATCCTCAACC 60.142 45.833 0.00 0.00 0.00 3.77
207 336 3.550437 ATTCTTCCTCATCCTCAACCG 57.450 47.619 0.00 0.00 0.00 4.44
208 337 1.938585 TCTTCCTCATCCTCAACCGT 58.061 50.000 0.00 0.00 0.00 4.83
209 338 1.550524 TCTTCCTCATCCTCAACCGTG 59.449 52.381 0.00 0.00 0.00 4.94
210 339 1.550524 CTTCCTCATCCTCAACCGTGA 59.449 52.381 0.00 0.00 0.00 4.35
211 340 1.866015 TCCTCATCCTCAACCGTGAT 58.134 50.000 0.00 0.00 31.85 3.06
212 341 1.757118 TCCTCATCCTCAACCGTGATC 59.243 52.381 0.00 0.00 31.85 2.92
213 342 1.536922 CCTCATCCTCAACCGTGATCG 60.537 57.143 0.00 0.00 31.85 3.69
214 343 0.179111 TCATCCTCAACCGTGATCGC 60.179 55.000 0.00 0.00 31.85 4.58
215 344 0.179100 CATCCTCAACCGTGATCGCT 60.179 55.000 4.48 0.00 31.85 4.93
311 446 3.962421 CGCCCCGCTAGTCTACCG 61.962 72.222 0.00 0.00 0.00 4.02
327 462 2.203070 CGCCACTATCCAGCCACC 60.203 66.667 0.00 0.00 0.00 4.61
351 486 3.211963 GCCCCCATGTGATGCGAC 61.212 66.667 0.00 0.00 0.00 5.19
360 495 4.451150 TGATGCGACTCACCGGCC 62.451 66.667 0.00 0.00 0.00 6.13
415 551 2.380410 GCAATCAGCGAACGACCGT 61.380 57.895 0.00 0.00 0.00 4.83
421 557 2.504244 GCGAACGACCGTGGAGAG 60.504 66.667 0.00 0.00 0.00 3.20
424 560 2.203596 AACGACCGTGGAGAGGGT 60.204 61.111 0.00 0.00 43.28 4.34
427 563 3.450115 GACCGTGGAGAGGGTCGG 61.450 72.222 0.00 0.00 44.95 4.79
431 568 2.043248 GTGGAGAGGGTCGGGCTA 60.043 66.667 0.00 0.00 0.00 3.93
433 570 1.381327 TGGAGAGGGTCGGGCTAAG 60.381 63.158 0.00 0.00 0.00 2.18
435 572 1.758906 GAGAGGGTCGGGCTAAGCT 60.759 63.158 0.00 0.00 0.00 3.74
442 579 1.000052 GGTCGGGCTAAGCTGATAGAC 60.000 57.143 0.00 0.00 0.00 2.59
459 596 2.180131 GACACGGCTGTCTCGTACGT 62.180 60.000 16.05 0.00 43.26 3.57
465 602 1.257539 GCTGTCTCGTACGTACAAGC 58.742 55.000 24.50 18.69 0.00 4.01
487 624 1.063811 GCGGTCTAGACGTGCTACC 59.936 63.158 23.87 7.73 32.75 3.18
514 651 2.159382 GGAAACGCTCCAAATGGAAGA 58.841 47.619 3.35 0.00 44.91 2.87
573 710 1.391485 CGAGCTGTAGCACACATCAAC 59.609 52.381 6.65 0.00 45.16 3.18
577 714 1.726791 CTGTAGCACACATCAACCGAC 59.273 52.381 0.00 0.00 36.29 4.79
578 715 1.076332 GTAGCACACATCAACCGACC 58.924 55.000 0.00 0.00 0.00 4.79
614 751 2.931068 CGCCCCCTTTCCTGCAAAC 61.931 63.158 0.00 0.00 0.00 2.93
652 792 3.982730 TCCATTCCACACATCCCTATCAT 59.017 43.478 0.00 0.00 0.00 2.45
653 793 4.042062 TCCATTCCACACATCCCTATCATC 59.958 45.833 0.00 0.00 0.00 2.92
654 794 4.202493 CCATTCCACACATCCCTATCATCA 60.202 45.833 0.00 0.00 0.00 3.07
655 795 5.516062 CCATTCCACACATCCCTATCATCAT 60.516 44.000 0.00 0.00 0.00 2.45
662 802 4.928020 CACATCCCTATCATCATTCTCACG 59.072 45.833 0.00 0.00 0.00 4.35
736 892 3.089784 CACCATCTTGGCGCGTAC 58.910 61.111 8.43 1.23 42.67 3.67
763 919 9.712305 ATCGGTTTGACTTCTTCCTATAATATG 57.288 33.333 0.00 0.00 0.00 1.78
775 931 0.605319 ATAATATGGCCGCACACCCG 60.605 55.000 0.00 0.00 0.00 5.28
791 947 2.267961 CGTTCCACCCAGGGCTAC 59.732 66.667 4.91 0.00 38.24 3.58
792 948 2.291043 CGTTCCACCCAGGGCTACT 61.291 63.158 4.91 0.00 38.24 2.57
793 949 0.974010 CGTTCCACCCAGGGCTACTA 60.974 60.000 4.91 0.00 38.24 1.82
794 950 0.540454 GTTCCACCCAGGGCTACTAC 59.460 60.000 4.91 0.00 38.24 2.73
795 951 0.117541 TTCCACCCAGGGCTACTACA 59.882 55.000 4.91 0.00 38.24 2.74
851 1007 4.398673 CAGCGGAGTACTTAACTAAGGAGT 59.601 45.833 0.00 0.00 39.07 3.85
869 1025 0.650512 GTAGTACGTACGTAGGCGCA 59.349 55.000 27.48 5.19 42.83 6.09
870 1026 0.650512 TAGTACGTACGTAGGCGCAC 59.349 55.000 27.48 17.40 42.83 5.34
900 1056 4.843728 TCTGCATTTTCCTATCGTCCTTT 58.156 39.130 0.00 0.00 0.00 3.11
921 1077 2.810650 ACGTCTGCTTAACGATCATCC 58.189 47.619 11.93 0.00 42.62 3.51
941 1097 1.420702 GTGACGAGACGAGACGAGG 59.579 63.158 0.00 0.00 0.00 4.63
990 1146 2.101965 CGTCAGCTCAGCTCTCGG 59.898 66.667 0.00 0.00 36.40 4.63
1005 1161 4.524318 CGGCGACCGGTAATGCCT 62.524 66.667 30.89 0.77 45.36 4.75
1042 1198 2.185608 GCCTCCTGCTTCTCGTCC 59.814 66.667 0.00 0.00 36.87 4.79
1355 1511 4.838152 CCCCACGGACATCGGCAG 62.838 72.222 0.00 0.00 44.45 4.85
1388 1544 1.548128 CCGGTATCTCTACCTCCAGGG 60.548 61.905 0.00 0.00 44.63 4.45
1455 1611 4.749310 CTGCAGCGGCTCGTCCTT 62.749 66.667 10.92 0.00 41.91 3.36
1466 1622 3.454375 GGCTCGTCCTTTCGAATAATCA 58.546 45.455 0.00 0.00 39.34 2.57
1467 1623 3.869246 GGCTCGTCCTTTCGAATAATCAA 59.131 43.478 0.00 0.00 39.34 2.57
1471 1627 6.238103 GCTCGTCCTTTCGAATAATCAATTCA 60.238 38.462 0.00 0.00 43.68 2.57
1505 1661 0.955919 CCGGAGTTCAACAAGCTCCC 60.956 60.000 0.00 0.00 44.32 4.30
1537 1693 4.442893 CCACTCTGTACTTGGAGAACAACA 60.443 45.833 14.56 0.00 34.76 3.33
1538 1694 4.747108 CACTCTGTACTTGGAGAACAACAG 59.253 45.833 14.56 0.00 34.02 3.16
1539 1695 4.649674 ACTCTGTACTTGGAGAACAACAGA 59.350 41.667 14.56 0.00 37.37 3.41
1540 1696 5.305644 ACTCTGTACTTGGAGAACAACAGAT 59.694 40.000 14.56 0.00 38.35 2.90
1560 1716 2.550699 TTAATGGCACCCTCCCTGCG 62.551 60.000 0.00 0.00 35.31 5.18
1569 1725 3.827898 CTCCCTGCGGACCTCGAC 61.828 72.222 0.00 0.00 42.43 4.20
1587 1743 3.117625 TCGACCTCCCTAATCTTCAGCTA 60.118 47.826 0.00 0.00 0.00 3.32
1600 1756 3.006430 TCTTCAGCTATTCAACGTGTCCA 59.994 43.478 0.00 0.00 0.00 4.02
1612 1768 1.831389 CGTGTCCAACAACCAGCTCG 61.831 60.000 0.00 0.00 0.00 5.03
1744 1900 2.405805 CCGTCGCCATTGCCATTGA 61.406 57.895 0.00 0.00 0.00 2.57
1745 1901 1.505807 CGTCGCCATTGCCATTGAA 59.494 52.632 0.00 0.00 0.00 2.69
1749 1905 0.249573 CGCCATTGCCATTGAATCCC 60.250 55.000 0.00 0.00 0.00 3.85
1864 2020 0.108615 CGCCGTGATCTTCTTCCTGT 60.109 55.000 0.00 0.00 0.00 4.00
1883 2039 0.319211 TTCTGTTTCCGTCGTCGCAT 60.319 50.000 0.00 0.00 35.54 4.73
1902 2058 2.552599 TGACAAATAAGGCCGACACA 57.447 45.000 0.00 0.00 0.00 3.72
2316 2478 2.720758 CGACTTCGTGAGCGCCAAG 61.721 63.158 2.29 4.49 38.14 3.61
2472 2634 0.243907 AGTCGTCCAACATCCTCGTG 59.756 55.000 0.00 0.00 0.00 4.35
2956 3118 2.493030 CCGACCATTCCGCGTAGT 59.507 61.111 4.92 0.00 0.00 2.73
2957 3119 1.876714 CCGACCATTCCGCGTAGTG 60.877 63.158 4.92 0.00 38.04 2.74
2958 3120 1.153901 CGACCATTCCGCGTAGTGT 60.154 57.895 4.92 0.00 35.45 3.55
2959 3121 1.138047 CGACCATTCCGCGTAGTGTC 61.138 60.000 4.92 4.19 35.45 3.67
2981 3167 4.764823 TCCATTTCCGTAGCTGTTTTTCAT 59.235 37.500 0.00 0.00 0.00 2.57
2983 3169 5.572896 CCATTTCCGTAGCTGTTTTTCATTC 59.427 40.000 0.00 0.00 0.00 2.67
2984 3170 5.759506 TTTCCGTAGCTGTTTTTCATTCA 57.240 34.783 0.00 0.00 0.00 2.57
2985 3171 5.356882 TTCCGTAGCTGTTTTTCATTCAG 57.643 39.130 0.00 0.00 0.00 3.02
2992 3178 4.488126 CTGTTTTTCATTCAGCTCCGAA 57.512 40.909 0.00 0.00 0.00 4.30
3000 3186 1.896220 TTCAGCTCCGAACTGCAAAT 58.104 45.000 0.00 0.00 35.04 2.32
3033 3219 2.592102 ACCAGCATTCCTCAACATGT 57.408 45.000 0.00 0.00 0.00 3.21
3034 3220 2.880443 ACCAGCATTCCTCAACATGTT 58.120 42.857 4.92 4.92 0.00 2.71
3035 3221 2.821969 ACCAGCATTCCTCAACATGTTC 59.178 45.455 8.48 0.00 0.00 3.18
3036 3222 2.821378 CCAGCATTCCTCAACATGTTCA 59.179 45.455 8.48 0.00 0.00 3.18
3037 3223 3.446161 CCAGCATTCCTCAACATGTTCAT 59.554 43.478 8.48 0.00 0.00 2.57
3038 3224 4.641541 CCAGCATTCCTCAACATGTTCATA 59.358 41.667 8.48 0.00 0.00 2.15
3039 3225 5.449588 CCAGCATTCCTCAACATGTTCATAC 60.450 44.000 8.48 0.00 0.00 2.39
3048 3234 8.200120 TCCTCAACATGTTCATACTTCATAGAG 58.800 37.037 8.48 7.54 0.00 2.43
3080 3266 2.875933 TCGTTGTTTTCCTGCGAATTCT 59.124 40.909 3.52 0.00 0.00 2.40
3081 3267 3.059188 TCGTTGTTTTCCTGCGAATTCTC 60.059 43.478 3.52 0.00 0.00 2.87
3082 3268 3.058914 CGTTGTTTTCCTGCGAATTCTCT 60.059 43.478 3.52 0.00 0.00 3.10
3084 3270 2.813754 TGTTTTCCTGCGAATTCTCTGG 59.186 45.455 13.58 13.58 0.00 3.86
3100 3286 6.861065 TTCTCTGGTGAATTCAAGTACAAC 57.139 37.500 10.35 0.00 0.00 3.32
3141 3331 4.925054 TCGTTTACCCAACTAGTTTCATCG 59.075 41.667 5.07 5.36 32.53 3.84
3147 3337 3.502211 CCCAACTAGTTTCATCGCAGTTT 59.498 43.478 5.07 0.00 0.00 2.66
3151 3341 7.305474 CCAACTAGTTTCATCGCAGTTTAAAT 58.695 34.615 5.07 0.00 0.00 1.40
3160 3351 9.997482 TTTCATCGCAGTTTAAATTATTAGGTC 57.003 29.630 0.00 0.00 0.00 3.85
3165 3356 6.292703 CGCAGTTTAAATTATTAGGTCTCCCG 60.293 42.308 0.00 0.00 35.12 5.14
3182 3375 3.768633 CGAAGGATCCAACTCCCAG 57.231 57.895 15.82 0.00 35.79 4.45
3194 3387 2.827322 CAACTCCCAGCAATTTGGATCA 59.173 45.455 0.00 0.00 40.87 2.92
3390 3594 1.485066 GGGAAGGAGAAGACGGCAATA 59.515 52.381 0.00 0.00 0.00 1.90
3416 3620 2.202851 AGCAAGCGATGAGAGGCG 60.203 61.111 0.00 0.00 0.00 5.52
3429 3633 1.153549 GAGGCGGCTCGTGAGAAAT 60.154 57.895 24.18 0.00 41.32 2.17
3430 3634 1.424493 GAGGCGGCTCGTGAGAAATG 61.424 60.000 24.18 0.00 41.32 2.32
3436 3642 2.275318 GGCTCGTGAGAAATGGAGAAG 58.725 52.381 0.00 0.00 41.32 2.85
3457 3663 2.664851 CGGCGCTGACAAGACCAA 60.665 61.111 11.90 0.00 0.00 3.67
3470 3676 6.908825 TGACAAGACCAACATATTTAGTTGC 58.091 36.000 0.00 0.00 43.74 4.17
3495 3701 5.491070 TGACGAATGGAGTGAATTCTGAAT 58.509 37.500 7.05 0.00 32.83 2.57
3534 3740 3.181486 TGACCGATGCTGTCTAGATCAAC 60.181 47.826 0.00 0.00 33.83 3.18
3548 3754 1.695893 ATCAACGTGGCTTCGATGCG 61.696 55.000 16.13 6.22 34.51 4.73
3552 3758 1.145759 ACGTGGCTTCGATGCGTATG 61.146 55.000 16.13 14.51 33.85 2.39
3557 3763 1.603172 GGCTTCGATGCGTATGTAGCT 60.603 52.381 16.13 0.00 35.28 3.32
3582 3788 3.071747 AGAAAGTTCAGTTGACCTCCCTC 59.928 47.826 0.00 0.00 0.00 4.30
3583 3789 2.407340 AGTTCAGTTGACCTCCCTCT 57.593 50.000 0.00 0.00 0.00 3.69
3591 3797 1.687493 GACCTCCCTCTCCCTGGTG 60.687 68.421 0.00 0.00 0.00 4.17
3592 3798 2.452114 CCTCCCTCTCCCTGGTGT 59.548 66.667 0.00 0.00 0.00 4.16
3593 3799 1.153695 ACCTCCCTCTCCCTGGTGTA 61.154 60.000 0.00 0.00 0.00 2.90
3594 3800 0.397816 CCTCCCTCTCCCTGGTGTAG 60.398 65.000 0.00 0.00 0.00 2.74
3595 3801 0.336737 CTCCCTCTCCCTGGTGTAGT 59.663 60.000 0.00 0.00 0.00 2.73
3596 3802 1.569548 CTCCCTCTCCCTGGTGTAGTA 59.430 57.143 0.00 0.00 0.00 1.82
3612 3823 4.028490 TACCCAGGGCCTTGCACG 62.028 66.667 9.90 1.17 36.86 5.34
3635 3846 2.033194 CGGGAGCTTTGAACGGTCC 61.033 63.158 11.01 11.01 45.82 4.46
3646 3857 1.005394 AACGGTCCGAGCAACGAAT 60.005 52.632 20.51 0.00 45.77 3.34
3663 3876 6.312918 GCAACGAATAGTTTCTGAGACCATTA 59.687 38.462 0.00 0.00 42.02 1.90
3664 3877 7.011482 GCAACGAATAGTTTCTGAGACCATTAT 59.989 37.037 0.00 0.00 42.02 1.28
3665 3878 9.529325 CAACGAATAGTTTCTGAGACCATTATA 57.471 33.333 0.00 0.00 42.02 0.98
3666 3879 9.530633 AACGAATAGTTTCTGAGACCATTATAC 57.469 33.333 0.00 0.00 40.88 1.47
3667 3880 7.861372 ACGAATAGTTTCTGAGACCATTATACG 59.139 37.037 0.00 0.00 0.00 3.06
3716 3929 4.492570 CGTTTTGATGCTATCCAACGACTC 60.493 45.833 16.74 0.00 42.72 3.36
3736 3949 2.851235 TCGCATGCAAATTTTGATACGC 59.149 40.909 19.57 7.94 0.00 4.42
3737 3950 2.034675 CGCATGCAAATTTTGATACGCC 60.035 45.455 19.57 0.00 0.00 5.68
3738 3951 2.928757 GCATGCAAATTTTGATACGCCA 59.071 40.909 14.21 0.82 0.00 5.69
3739 3952 3.000523 GCATGCAAATTTTGATACGCCAG 59.999 43.478 14.21 0.00 0.00 4.85
3740 3953 3.229276 TGCAAATTTTGATACGCCAGG 57.771 42.857 13.26 0.00 0.00 4.45
3741 3954 2.560542 TGCAAATTTTGATACGCCAGGT 59.439 40.909 13.26 0.00 0.00 4.00
3742 3955 3.006323 TGCAAATTTTGATACGCCAGGTT 59.994 39.130 13.26 0.00 0.00 3.50
3743 3956 3.993736 GCAAATTTTGATACGCCAGGTTT 59.006 39.130 13.26 0.00 0.00 3.27
3744 3957 4.091365 GCAAATTTTGATACGCCAGGTTTC 59.909 41.667 13.26 0.00 0.00 2.78
3745 3958 3.757745 ATTTTGATACGCCAGGTTTCG 57.242 42.857 0.00 0.00 30.13 3.46
3746 3959 2.172851 TTTGATACGCCAGGTTTCGT 57.827 45.000 0.00 0.00 42.09 3.85
3747 3960 2.172851 TTGATACGCCAGGTTTCGTT 57.827 45.000 0.00 0.00 39.79 3.85
3748 3961 2.172851 TGATACGCCAGGTTTCGTTT 57.827 45.000 0.00 0.00 39.79 3.60
3749 3962 2.070783 TGATACGCCAGGTTTCGTTTC 58.929 47.619 0.00 0.00 39.79 2.78
3750 3963 2.070783 GATACGCCAGGTTTCGTTTCA 58.929 47.619 0.00 0.00 39.79 2.69
3751 3964 2.172851 TACGCCAGGTTTCGTTTCAT 57.827 45.000 0.00 0.00 39.79 2.57
3752 3965 2.172851 ACGCCAGGTTTCGTTTCATA 57.827 45.000 0.00 0.00 35.09 2.15
3753 3966 2.073816 ACGCCAGGTTTCGTTTCATAG 58.926 47.619 0.00 0.00 35.09 2.23
3754 3967 1.202031 CGCCAGGTTTCGTTTCATAGC 60.202 52.381 0.00 0.00 0.00 2.97
3755 3968 1.132453 GCCAGGTTTCGTTTCATAGCC 59.868 52.381 0.00 0.00 0.00 3.93
3756 3969 1.396996 CCAGGTTTCGTTTCATAGCCG 59.603 52.381 0.00 0.00 0.00 5.52
3757 3970 1.396996 CAGGTTTCGTTTCATAGCCGG 59.603 52.381 0.00 0.00 0.00 6.13
3758 3971 1.276989 AGGTTTCGTTTCATAGCCGGA 59.723 47.619 5.05 0.00 0.00 5.14
3759 3972 2.078392 GGTTTCGTTTCATAGCCGGAA 58.922 47.619 5.05 0.00 0.00 4.30
3760 3973 2.681344 GGTTTCGTTTCATAGCCGGAAT 59.319 45.455 5.05 0.00 0.00 3.01
3761 3974 3.242641 GGTTTCGTTTCATAGCCGGAATC 60.243 47.826 5.05 0.00 0.00 2.52
3762 3975 3.536956 TTCGTTTCATAGCCGGAATCT 57.463 42.857 5.05 0.00 0.00 2.40
3763 3976 2.821546 TCGTTTCATAGCCGGAATCTG 58.178 47.619 5.05 0.00 0.00 2.90
3764 3977 1.867233 CGTTTCATAGCCGGAATCTGG 59.133 52.381 5.05 3.14 0.00 3.86
3765 3978 2.483013 CGTTTCATAGCCGGAATCTGGA 60.483 50.000 13.24 0.00 0.00 3.86
3766 3979 3.744660 GTTTCATAGCCGGAATCTGGAT 58.255 45.455 13.24 8.47 0.00 3.41
3767 3980 4.137543 GTTTCATAGCCGGAATCTGGATT 58.862 43.478 13.24 1.40 0.00 3.01
3768 3981 4.437682 TTCATAGCCGGAATCTGGATTT 57.562 40.909 13.24 0.00 0.00 2.17
3769 3982 3.743521 TCATAGCCGGAATCTGGATTTG 58.256 45.455 13.24 11.39 0.00 2.32
3770 3983 1.967319 TAGCCGGAATCTGGATTTGC 58.033 50.000 13.24 0.00 0.00 3.68
3771 3984 1.097547 AGCCGGAATCTGGATTTGCG 61.098 55.000 13.24 0.00 0.00 4.85
3772 3985 1.095228 GCCGGAATCTGGATTTGCGA 61.095 55.000 13.24 0.00 0.00 5.10
3773 3986 1.597742 CCGGAATCTGGATTTGCGAT 58.402 50.000 0.74 0.00 0.00 4.58
3774 3987 1.949525 CCGGAATCTGGATTTGCGATT 59.050 47.619 0.74 0.00 0.00 3.34
3775 3988 2.358898 CCGGAATCTGGATTTGCGATTT 59.641 45.455 0.74 0.00 0.00 2.17
3776 3989 3.548818 CCGGAATCTGGATTTGCGATTTC 60.549 47.826 0.74 0.00 0.00 2.17
3777 3990 3.548818 CGGAATCTGGATTTGCGATTTCC 60.549 47.826 0.00 0.00 0.00 3.13
3778 3991 3.381272 GGAATCTGGATTTGCGATTTCCA 59.619 43.478 6.10 6.10 37.20 3.53
3779 3992 4.354587 GAATCTGGATTTGCGATTTCCAC 58.645 43.478 2.65 0.00 34.65 4.02
3780 3993 1.737236 TCTGGATTTGCGATTTCCACG 59.263 47.619 2.65 0.00 34.65 4.94
3781 3994 0.808125 TGGATTTGCGATTTCCACGG 59.192 50.000 2.65 0.00 34.65 4.94
3782 3995 1.091537 GGATTTGCGATTTCCACGGA 58.908 50.000 0.00 0.00 0.00 4.69
3783 3996 1.064060 GGATTTGCGATTTCCACGGAG 59.936 52.381 0.00 0.00 32.30 4.63
3784 3997 2.006888 GATTTGCGATTTCCACGGAGA 58.993 47.619 0.00 0.00 32.30 3.71
3785 3998 1.885560 TTTGCGATTTCCACGGAGAA 58.114 45.000 0.00 0.00 32.30 2.87
3786 3999 1.438651 TTGCGATTTCCACGGAGAAG 58.561 50.000 0.00 0.00 32.30 2.85
3787 4000 0.391130 TGCGATTTCCACGGAGAAGG 60.391 55.000 0.00 0.00 0.00 3.46
3788 4001 1.090052 GCGATTTCCACGGAGAAGGG 61.090 60.000 0.00 0.00 0.00 3.95
3789 4002 0.535335 CGATTTCCACGGAGAAGGGA 59.465 55.000 0.00 0.00 0.00 4.20
3790 4003 1.471676 CGATTTCCACGGAGAAGGGAG 60.472 57.143 0.00 0.00 31.19 4.30
3791 4004 1.555533 GATTTCCACGGAGAAGGGAGT 59.444 52.381 0.00 0.00 31.19 3.85
3792 4005 1.430992 TTTCCACGGAGAAGGGAGTT 58.569 50.000 0.00 0.00 31.19 3.01
3793 4006 1.430992 TTCCACGGAGAAGGGAGTTT 58.569 50.000 0.00 0.00 31.19 2.66
3794 4007 0.685097 TCCACGGAGAAGGGAGTTTG 59.315 55.000 0.00 0.00 0.00 2.93
3795 4008 0.396811 CCACGGAGAAGGGAGTTTGT 59.603 55.000 0.00 0.00 0.00 2.83
3796 4009 1.512926 CACGGAGAAGGGAGTTTGTG 58.487 55.000 0.00 0.00 0.00 3.33
3797 4010 1.070134 CACGGAGAAGGGAGTTTGTGA 59.930 52.381 0.00 0.00 0.00 3.58
3798 4011 1.344763 ACGGAGAAGGGAGTTTGTGAG 59.655 52.381 0.00 0.00 0.00 3.51
3799 4012 1.814793 GGAGAAGGGAGTTTGTGAGC 58.185 55.000 0.00 0.00 0.00 4.26
3800 4013 1.349357 GGAGAAGGGAGTTTGTGAGCT 59.651 52.381 0.00 0.00 0.00 4.09
3801 4014 2.614229 GGAGAAGGGAGTTTGTGAGCTC 60.614 54.545 6.82 6.82 32.84 4.09
3815 4028 3.418068 GCTCCAGCTCACGTGCAC 61.418 66.667 11.67 6.82 38.21 4.57
3816 4029 2.740055 CTCCAGCTCACGTGCACC 60.740 66.667 11.67 0.98 34.99 5.01
3817 4030 3.519973 CTCCAGCTCACGTGCACCA 62.520 63.158 11.67 0.00 34.99 4.17
3818 4031 2.359107 CCAGCTCACGTGCACCAT 60.359 61.111 11.67 0.00 34.99 3.55
3819 4032 1.968017 CCAGCTCACGTGCACCATT 60.968 57.895 11.67 0.00 34.99 3.16
3820 4033 1.518056 CCAGCTCACGTGCACCATTT 61.518 55.000 11.67 0.00 34.99 2.32
3821 4034 0.386352 CAGCTCACGTGCACCATTTG 60.386 55.000 11.67 3.67 34.99 2.32
3867 4080 9.905171 AATTCAAGAAGTCTGAATTCTTTTAGC 57.095 29.630 25.33 0.00 42.86 3.09
3868 4081 8.450578 TTCAAGAAGTCTGAATTCTTTTAGCA 57.549 30.769 25.33 7.33 42.86 3.49
3869 4082 8.450578 TCAAGAAGTCTGAATTCTTTTAGCAA 57.549 30.769 25.33 8.63 42.86 3.91
3870 4083 8.345565 TCAAGAAGTCTGAATTCTTTTAGCAAC 58.654 33.333 25.33 0.00 42.86 4.17
3871 4084 7.807977 AGAAGTCTGAATTCTTTTAGCAACA 57.192 32.000 14.06 0.00 33.16 3.33
3872 4085 8.225603 AGAAGTCTGAATTCTTTTAGCAACAA 57.774 30.769 14.06 0.00 33.16 2.83
3873 4086 8.686334 AGAAGTCTGAATTCTTTTAGCAACAAA 58.314 29.630 14.06 0.00 33.16 2.83
3874 4087 8.634475 AAGTCTGAATTCTTTTAGCAACAAAC 57.366 30.769 7.05 0.00 0.00 2.93
3875 4088 7.771183 AGTCTGAATTCTTTTAGCAACAAACA 58.229 30.769 7.05 0.00 0.00 2.83
3876 4089 8.416329 AGTCTGAATTCTTTTAGCAACAAACAT 58.584 29.630 7.05 0.00 0.00 2.71
3877 4090 9.034544 GTCTGAATTCTTTTAGCAACAAACATT 57.965 29.630 7.05 0.00 0.00 2.71
3878 4091 9.033481 TCTGAATTCTTTTAGCAACAAACATTG 57.967 29.630 7.05 0.00 0.00 2.82
3879 4092 8.939201 TGAATTCTTTTAGCAACAAACATTGA 57.061 26.923 7.05 0.00 0.00 2.57
3880 4093 9.545105 TGAATTCTTTTAGCAACAAACATTGAT 57.455 25.926 7.05 0.00 31.94 2.57
3881 4094 9.801714 GAATTCTTTTAGCAACAAACATTGATG 57.198 29.630 0.00 0.00 36.62 3.07
3882 4095 8.891671 ATTCTTTTAGCAACAAACATTGATGT 57.108 26.923 0.00 0.00 44.20 3.06
3883 4096 7.697352 TCTTTTAGCAACAAACATTGATGTG 57.303 32.000 0.00 0.00 41.61 3.21
3884 4097 7.264221 TCTTTTAGCAACAAACATTGATGTGT 58.736 30.769 0.00 0.00 41.61 3.72
3898 4111 2.326550 GTGTGTTTCACGGGCGTG 59.673 61.111 0.00 0.00 46.64 5.34
3899 4112 3.578272 TGTGTTTCACGGGCGTGC 61.578 61.111 0.00 0.00 45.04 5.34
3900 4113 4.659874 GTGTTTCACGGGCGTGCG 62.660 66.667 0.00 0.00 45.04 5.34
3902 4115 3.037249 GTTTCACGGGCGTGCGTA 61.037 61.111 0.00 0.00 45.04 4.42
3903 4116 2.048033 TTTCACGGGCGTGCGTAT 60.048 55.556 0.00 0.00 45.04 3.06
3904 4117 1.668472 TTTCACGGGCGTGCGTATT 60.668 52.632 0.00 0.00 45.04 1.89
3905 4118 1.229315 TTTCACGGGCGTGCGTATTT 61.229 50.000 0.00 0.00 45.04 1.40
3906 4119 1.229315 TTCACGGGCGTGCGTATTTT 61.229 50.000 0.00 0.00 45.04 1.82
3907 4120 1.225908 CACGGGCGTGCGTATTTTC 60.226 57.895 0.00 0.00 39.39 2.29
3908 4121 2.392974 ACGGGCGTGCGTATTTTCC 61.393 57.895 0.00 0.00 0.00 3.13
3909 4122 2.795973 GGGCGTGCGTATTTTCCC 59.204 61.111 0.00 0.00 0.00 3.97
3910 4123 2.041686 GGGCGTGCGTATTTTCCCA 61.042 57.895 0.00 0.00 34.01 4.37
3911 4124 1.381165 GGGCGTGCGTATTTTCCCAT 61.381 55.000 0.00 0.00 34.01 4.00
3912 4125 0.454196 GGCGTGCGTATTTTCCCATT 59.546 50.000 0.00 0.00 0.00 3.16
3913 4126 1.544686 GCGTGCGTATTTTCCCATTG 58.455 50.000 0.00 0.00 0.00 2.82
3914 4127 1.797348 GCGTGCGTATTTTCCCATTGG 60.797 52.381 0.00 0.00 0.00 3.16
3915 4128 1.740585 CGTGCGTATTTTCCCATTGGA 59.259 47.619 3.62 0.00 39.54 3.53
3930 4143 4.514781 CATTGGAATGGCATATGTGGAG 57.485 45.455 0.00 0.00 32.78 3.86
3931 4144 2.662535 TGGAATGGCATATGTGGAGG 57.337 50.000 0.00 0.00 0.00 4.30
3932 4145 1.852309 TGGAATGGCATATGTGGAGGT 59.148 47.619 0.00 0.00 0.00 3.85
3933 4146 2.244510 TGGAATGGCATATGTGGAGGTT 59.755 45.455 0.00 0.00 0.00 3.50
3934 4147 3.299503 GGAATGGCATATGTGGAGGTTT 58.700 45.455 0.00 0.00 0.00 3.27
3935 4148 3.068590 GGAATGGCATATGTGGAGGTTTG 59.931 47.826 0.00 0.00 0.00 2.93
3936 4149 3.668141 ATGGCATATGTGGAGGTTTGA 57.332 42.857 0.00 0.00 0.00 2.69
3937 4150 3.448093 TGGCATATGTGGAGGTTTGAA 57.552 42.857 4.29 0.00 0.00 2.69
3938 4151 3.772387 TGGCATATGTGGAGGTTTGAAA 58.228 40.909 4.29 0.00 0.00 2.69
3939 4152 4.155709 TGGCATATGTGGAGGTTTGAAAA 58.844 39.130 4.29 0.00 0.00 2.29
3940 4153 4.590647 TGGCATATGTGGAGGTTTGAAAAA 59.409 37.500 4.29 0.00 0.00 1.94
3941 4154 5.170748 GGCATATGTGGAGGTTTGAAAAAG 58.829 41.667 4.29 0.00 0.00 2.27
3942 4155 5.047377 GGCATATGTGGAGGTTTGAAAAAGA 60.047 40.000 4.29 0.00 0.00 2.52
3943 4156 6.454795 GCATATGTGGAGGTTTGAAAAAGAA 58.545 36.000 4.29 0.00 0.00 2.52
3944 4157 6.928492 GCATATGTGGAGGTTTGAAAAAGAAA 59.072 34.615 4.29 0.00 0.00 2.52
3945 4158 7.440856 GCATATGTGGAGGTTTGAAAAAGAAAA 59.559 33.333 4.29 0.00 0.00 2.29
3946 4159 9.323985 CATATGTGGAGGTTTGAAAAAGAAAAA 57.676 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.111577 TCTCCATCCCCAATTAGTTGTCT 58.888 43.478 0.00 0.00 33.36 3.41
18 19 6.590656 TTATCTCCATCCCCAATTAGTTGT 57.409 37.500 0.00 0.00 33.36 3.32
28 29 8.170730 ACCTATTTTAACATTATCTCCATCCCC 58.829 37.037 0.00 0.00 0.00 4.81
72 73 5.893255 TGAGACATTTATTTTGGGATGGAGG 59.107 40.000 0.00 0.00 0.00 4.30
73 74 7.408756 TTGAGACATTTATTTTGGGATGGAG 57.591 36.000 0.00 0.00 0.00 3.86
74 75 7.976414 ATTGAGACATTTATTTTGGGATGGA 57.024 32.000 0.00 0.00 0.00 3.41
79 80 9.382275 CCCTAAAATTGAGACATTTATTTTGGG 57.618 33.333 12.04 12.04 42.99 4.12
100 101 9.466497 TTCGAGAGTAAATACTACTTTCCCTAA 57.534 33.333 0.00 0.00 36.50 2.69
102 103 7.951347 TTCGAGAGTAAATACTACTTTCCCT 57.049 36.000 0.00 0.00 36.50 4.20
134 257 7.911727 GGCCGACGAAATACTACAATAAAAATT 59.088 33.333 0.00 0.00 0.00 1.82
135 258 7.281549 AGGCCGACGAAATACTACAATAAAAAT 59.718 33.333 0.00 0.00 0.00 1.82
136 259 6.594937 AGGCCGACGAAATACTACAATAAAAA 59.405 34.615 0.00 0.00 0.00 1.94
137 260 6.108015 AGGCCGACGAAATACTACAATAAAA 58.892 36.000 0.00 0.00 0.00 1.52
140 263 4.581824 AGAGGCCGACGAAATACTACAATA 59.418 41.667 0.00 0.00 0.00 1.90
141 264 3.383825 AGAGGCCGACGAAATACTACAAT 59.616 43.478 0.00 0.00 0.00 2.71
143 266 2.357009 GAGAGGCCGACGAAATACTACA 59.643 50.000 0.00 0.00 0.00 2.74
144 267 2.287487 GGAGAGGCCGACGAAATACTAC 60.287 54.545 0.00 0.00 0.00 2.73
145 268 1.952296 GGAGAGGCCGACGAAATACTA 59.048 52.381 0.00 0.00 0.00 1.82
146 269 0.745468 GGAGAGGCCGACGAAATACT 59.255 55.000 0.00 0.00 0.00 2.12
147 270 3.269520 GGAGAGGCCGACGAAATAC 57.730 57.895 0.00 0.00 0.00 1.89
188 317 2.028112 CACGGTTGAGGATGAGGAAGAA 60.028 50.000 0.00 0.00 0.00 2.52
189 318 1.550524 CACGGTTGAGGATGAGGAAGA 59.449 52.381 0.00 0.00 0.00 2.87
191 320 1.639722 TCACGGTTGAGGATGAGGAA 58.360 50.000 0.00 0.00 0.00 3.36
205 334 2.774007 GAAAACAATGAGCGATCACGG 58.226 47.619 5.03 3.32 40.15 4.94
206 335 2.421523 CGAAAACAATGAGCGATCACG 58.578 47.619 5.03 2.41 42.93 4.35
207 336 2.169179 GCGAAAACAATGAGCGATCAC 58.831 47.619 5.03 0.00 0.00 3.06
208 337 2.525750 GCGAAAACAATGAGCGATCA 57.474 45.000 5.53 5.53 0.00 2.92
213 342 2.767919 GCGCGCGAAAACAATGAGC 61.768 57.895 37.18 6.90 0.00 4.26
214 343 3.352536 GCGCGCGAAAACAATGAG 58.647 55.556 37.18 0.00 0.00 2.90
256 390 4.099824 GGGTTAAATTACCATTTGCGTCG 58.900 43.478 0.00 0.00 40.09 5.12
311 446 2.193248 GGGTGGCTGGATAGTGGC 59.807 66.667 0.00 0.00 0.00 5.01
327 462 2.015243 ATCACATGGGGGCATGGAGG 62.015 60.000 0.00 0.00 36.91 4.30
394 530 3.487202 TCGTTCGCTGATTGCCGC 61.487 61.111 0.00 0.00 38.78 6.53
396 532 2.785258 GGTCGTTCGCTGATTGCC 59.215 61.111 0.00 0.00 38.78 4.52
415 551 1.381327 CTTAGCCCGACCCTCTCCA 60.381 63.158 0.00 0.00 0.00 3.86
421 557 0.318762 CTATCAGCTTAGCCCGACCC 59.681 60.000 0.00 0.00 0.00 4.46
424 560 1.681793 GTGTCTATCAGCTTAGCCCGA 59.318 52.381 0.00 0.00 0.00 5.14
425 561 1.600663 CGTGTCTATCAGCTTAGCCCG 60.601 57.143 0.00 0.00 0.00 6.13
426 562 1.269831 CCGTGTCTATCAGCTTAGCCC 60.270 57.143 0.00 0.00 0.00 5.19
427 563 1.870167 GCCGTGTCTATCAGCTTAGCC 60.870 57.143 0.00 0.00 0.00 3.93
431 568 0.898320 ACAGCCGTGTCTATCAGCTT 59.102 50.000 0.00 0.00 26.76 3.74
442 579 0.519999 GTACGTACGAGACAGCCGTG 60.520 60.000 24.41 0.00 40.76 4.94
459 596 1.020861 TCTAGACCGCGTCGCTTGTA 61.021 55.000 16.36 4.18 37.67 2.41
465 602 2.276493 CACGTCTAGACCGCGTCG 60.276 66.667 17.23 6.95 37.67 5.12
487 624 0.320421 TTGGAGCGTTTCCTTCGGAG 60.320 55.000 9.11 0.00 46.92 4.63
514 651 4.666253 AGCAAGCACGGCCATGGT 62.666 61.111 14.67 0.00 0.00 3.55
573 710 2.885644 CTGCACGAATCGGGTCGG 60.886 66.667 6.80 0.00 45.40 4.79
662 802 3.841643 TGGAATAGTCGTCCGTTTCTTC 58.158 45.455 0.00 0.00 38.06 2.87
667 807 1.472728 GCCATGGAATAGTCGTCCGTT 60.473 52.381 18.40 0.00 38.06 4.44
736 892 9.712305 ATATTATAGGAAGAAGTCAAACCGATG 57.288 33.333 0.00 0.00 0.00 3.84
775 931 0.540454 GTAGTAGCCCTGGGTGGAAC 59.460 60.000 15.56 7.61 38.35 3.62
783 939 7.584122 TCTTAATCTACTTGTAGTAGCCCTG 57.416 40.000 8.63 0.46 45.93 4.45
815 971 1.476891 CTCCGCTGCAAACTACTCCTA 59.523 52.381 0.00 0.00 0.00 2.94
816 972 0.247736 CTCCGCTGCAAACTACTCCT 59.752 55.000 0.00 0.00 0.00 3.69
817 973 0.037232 ACTCCGCTGCAAACTACTCC 60.037 55.000 0.00 0.00 0.00 3.85
826 982 3.119245 CCTTAGTTAAGTACTCCGCTGCA 60.119 47.826 0.00 0.00 38.33 4.41
828 984 4.398673 ACTCCTTAGTTAAGTACTCCGCTG 59.601 45.833 0.00 0.00 38.33 5.18
851 1007 0.650512 GTGCGCCTACGTACGTACTA 59.349 55.000 23.60 6.61 44.79 1.82
872 1028 1.372582 TAGGAAAATGCAGAGCGCTG 58.627 50.000 18.48 13.73 45.13 5.18
876 1032 2.545946 GGACGATAGGAAAATGCAGAGC 59.454 50.000 0.00 0.00 43.77 4.09
900 1056 3.547413 CGGATGATCGTTAAGCAGACGTA 60.547 47.826 0.00 0.00 41.08 3.57
908 1064 2.117137 CGTCACCGGATGATCGTTAAG 58.883 52.381 9.46 0.00 40.28 1.85
910 1066 1.332686 CTCGTCACCGGATGATCGTTA 59.667 52.381 9.46 0.64 40.28 3.18
921 1077 2.096030 CGTCTCGTCTCGTCACCG 59.904 66.667 0.00 0.00 0.00 4.94
941 1097 0.600255 CCCGTATCGATGGAGTTGGC 60.600 60.000 8.54 0.00 32.85 4.52
990 1146 1.883084 CAGAGGCATTACCGGTCGC 60.883 63.158 12.40 13.21 46.52 5.19
1188 1344 2.203153 GTGCCGTTGTCACACCCT 60.203 61.111 0.00 0.00 34.73 4.34
1194 1350 4.308458 CCTCCGGTGCCGTTGTCA 62.308 66.667 9.90 0.00 37.81 3.58
1455 1611 4.035091 CGGCCAGTGAATTGATTATTCGAA 59.965 41.667 2.24 0.00 44.67 3.71
1537 1693 2.091665 CAGGGAGGGTGCCATTAAATCT 60.092 50.000 0.00 0.00 0.00 2.40
1538 1694 2.310538 CAGGGAGGGTGCCATTAAATC 58.689 52.381 0.00 0.00 0.00 2.17
1539 1695 1.689258 GCAGGGAGGGTGCCATTAAAT 60.689 52.381 0.00 0.00 34.67 1.40
1540 1696 0.324275 GCAGGGAGGGTGCCATTAAA 60.324 55.000 0.00 0.00 34.67 1.52
1560 1716 1.133419 AGATTAGGGAGGTCGAGGTCC 60.133 57.143 4.61 4.61 0.00 4.46
1566 1722 2.035632 AGCTGAAGATTAGGGAGGTCG 58.964 52.381 0.00 0.00 0.00 4.79
1569 1725 5.815233 TGAATAGCTGAAGATTAGGGAGG 57.185 43.478 0.00 0.00 0.00 4.30
1587 1743 2.357637 CTGGTTGTTGGACACGTTGAAT 59.642 45.455 0.00 0.00 0.00 2.57
1600 1756 2.665185 GCCGTCGAGCTGGTTGTT 60.665 61.111 0.00 0.00 0.00 2.83
1651 1807 1.745489 CTGTCCCACTAAAGGCGCC 60.745 63.158 21.89 21.89 0.00 6.53
1744 1900 4.109656 AGGAGAGGCCGGGGGATT 62.110 66.667 2.18 0.00 43.43 3.01
1745 1901 4.888325 CAGGAGAGGCCGGGGGAT 62.888 72.222 2.18 0.00 43.43 3.85
1864 2020 0.319211 ATGCGACGACGGAAACAGAA 60.319 50.000 5.36 0.00 43.78 3.02
1883 2039 2.552599 TGTGTCGGCCTTATTTGTCA 57.447 45.000 0.00 0.00 0.00 3.58
2316 2478 3.767044 GAGGAGGGAGGAGAGGCCC 62.767 73.684 0.00 0.00 45.04 5.80
2607 2769 2.092882 GCCGAAGCTGTACACGTCC 61.093 63.158 0.00 0.00 35.50 4.79
2778 2940 1.267574 GCACCATCTCCTCCTCCACA 61.268 60.000 0.00 0.00 0.00 4.17
2871 3033 1.537638 CCGACGATGTCCTCTATCCTG 59.462 57.143 0.00 0.00 0.00 3.86
2956 3118 2.851263 AACAGCTACGGAAATGGACA 57.149 45.000 0.00 0.00 0.00 4.02
2957 3119 4.023536 TGAAAAACAGCTACGGAAATGGAC 60.024 41.667 0.00 0.00 0.00 4.02
2958 3120 4.138290 TGAAAAACAGCTACGGAAATGGA 58.862 39.130 0.00 0.00 0.00 3.41
2959 3121 4.497473 TGAAAAACAGCTACGGAAATGG 57.503 40.909 0.00 0.00 0.00 3.16
2981 3167 1.896220 ATTTGCAGTTCGGAGCTGAA 58.104 45.000 23.67 12.18 36.12 3.02
2983 3169 1.267806 ACAATTTGCAGTTCGGAGCTG 59.732 47.619 16.45 16.45 37.06 4.24
2984 3170 1.267806 CACAATTTGCAGTTCGGAGCT 59.732 47.619 0.00 0.00 0.00 4.09
2985 3171 1.689959 CACAATTTGCAGTTCGGAGC 58.310 50.000 0.00 0.00 0.00 4.70
3000 3186 5.336372 GGAATGCTGGTATAGTTTTGCACAA 60.336 40.000 0.00 0.00 33.16 3.33
3017 3203 5.503927 AGTATGAACATGTTGAGGAATGCT 58.496 37.500 17.58 7.54 0.00 3.79
3035 3221 9.227490 CGAAGTAAACAGACTCTATGAAGTATG 57.773 37.037 3.26 3.26 42.73 2.39
3036 3222 8.958506 ACGAAGTAAACAGACTCTATGAAGTAT 58.041 33.333 0.00 0.00 41.94 2.12
3037 3223 8.332996 ACGAAGTAAACAGACTCTATGAAGTA 57.667 34.615 0.00 0.00 41.94 2.24
3038 3224 7.216973 ACGAAGTAAACAGACTCTATGAAGT 57.783 36.000 0.00 0.00 41.94 3.01
3039 3225 7.595502 ACAACGAAGTAAACAGACTCTATGAAG 59.404 37.037 0.00 0.00 45.00 3.02
3048 3234 5.963586 CAGGAAAACAACGAAGTAAACAGAC 59.036 40.000 0.00 0.00 45.00 3.51
3080 3266 7.220740 TGTATGTTGTACTTGAATTCACCAGA 58.779 34.615 7.89 0.00 0.00 3.86
3081 3267 7.433708 TGTATGTTGTACTTGAATTCACCAG 57.566 36.000 7.89 6.62 0.00 4.00
3082 3268 7.809546 TTGTATGTTGTACTTGAATTCACCA 57.190 32.000 7.89 0.00 0.00 4.17
3165 3356 0.620556 TGCTGGGAGTTGGATCCTTC 59.379 55.000 14.23 8.02 39.50 3.46
3169 3362 2.167075 CCAAATTGCTGGGAGTTGGATC 59.833 50.000 0.00 0.00 43.06 3.36
3171 3364 1.146774 TCCAAATTGCTGGGAGTTGGA 59.853 47.619 2.29 2.29 45.72 3.53
3182 3375 2.613691 CACCTTGCTGATCCAAATTGC 58.386 47.619 0.00 0.00 0.00 3.56
3194 3387 0.112995 TCTCCATTTGGCACCTTGCT 59.887 50.000 0.00 0.00 44.28 3.91
3245 3439 2.502080 CGACTGTCGACTGACCGC 60.502 66.667 26.71 12.54 43.74 5.68
3367 3571 1.511768 CCGTCTTCTCCTTCCCGTC 59.488 63.158 0.00 0.00 0.00 4.79
3375 3579 1.666189 GCTGTTATTGCCGTCTTCTCC 59.334 52.381 0.00 0.00 0.00 3.71
3390 3594 1.002868 ATCGCTTGCTGAGGCTGTT 60.003 52.632 0.00 0.00 39.59 3.16
3399 3603 2.202851 CGCCTCTCATCGCTTGCT 60.203 61.111 0.00 0.00 0.00 3.91
3416 3620 2.275318 CTTCTCCATTTCTCACGAGCC 58.725 52.381 0.00 0.00 0.00 4.70
3470 3676 3.620374 CAGAATTCACTCCATTCGTCAGG 59.380 47.826 8.44 0.00 36.01 3.86
3495 3701 3.668447 GGTCAGAGAGAATTGTTCAGCA 58.332 45.455 0.00 0.00 0.00 4.41
3534 3740 1.145759 ACATACGCATCGAAGCCACG 61.146 55.000 7.11 0.84 0.00 4.94
3548 3754 7.385205 TCAACTGAACTTTCTCAAGCTACATAC 59.615 37.037 0.00 0.00 32.57 2.39
3552 3758 5.050023 GGTCAACTGAACTTTCTCAAGCTAC 60.050 44.000 0.00 0.00 32.57 3.58
3557 3763 4.451900 GGAGGTCAACTGAACTTTCTCAA 58.548 43.478 0.00 0.00 43.22 3.02
3591 3797 1.223763 GCAAGGCCCTGGGTACTAC 59.776 63.158 15.56 5.80 0.00 2.73
3592 3798 1.229690 TGCAAGGCCCTGGGTACTA 60.230 57.895 15.56 0.00 0.00 1.82
3593 3799 2.531685 TGCAAGGCCCTGGGTACT 60.532 61.111 15.56 10.40 0.00 2.73
3594 3800 2.361230 GTGCAAGGCCCTGGGTAC 60.361 66.667 15.56 8.05 0.00 3.34
3595 3801 4.028490 CGTGCAAGGCCCTGGGTA 62.028 66.667 15.56 0.00 0.00 3.69
3635 3846 4.030753 GTCTCAGAAACTATTCGTTGCTCG 59.969 45.833 0.00 0.00 39.60 5.03
3646 3857 6.317140 ACGTCGTATAATGGTCTCAGAAACTA 59.683 38.462 0.00 0.00 0.00 2.24
3663 3876 0.376152 CGGTAGCAGTGACGTCGTAT 59.624 55.000 11.62 0.00 0.00 3.06
3664 3877 1.789751 CGGTAGCAGTGACGTCGTA 59.210 57.895 11.62 0.00 0.00 3.43
3665 3878 2.559840 CGGTAGCAGTGACGTCGT 59.440 61.111 11.62 0.00 0.00 4.34
3666 3879 2.874780 GCGGTAGCAGTGACGTCG 60.875 66.667 11.62 0.00 44.35 5.12
3716 3929 2.034675 GGCGTATCAAAATTTGCATGCG 60.035 45.455 14.09 16.93 33.36 4.73
3736 3949 1.396996 CGGCTATGAAACGAAACCTGG 59.603 52.381 0.00 0.00 0.00 4.45
3737 3950 1.396996 CCGGCTATGAAACGAAACCTG 59.603 52.381 0.00 0.00 0.00 4.00
3738 3951 1.276989 TCCGGCTATGAAACGAAACCT 59.723 47.619 0.00 0.00 0.00 3.50
3739 3952 1.729284 TCCGGCTATGAAACGAAACC 58.271 50.000 0.00 0.00 0.00 3.27
3740 3953 3.621715 AGATTCCGGCTATGAAACGAAAC 59.378 43.478 0.00 0.00 0.00 2.78
3741 3954 3.621268 CAGATTCCGGCTATGAAACGAAA 59.379 43.478 0.00 0.00 0.00 3.46
3742 3955 3.194861 CAGATTCCGGCTATGAAACGAA 58.805 45.455 0.00 0.00 0.00 3.85
3743 3956 2.483013 CCAGATTCCGGCTATGAAACGA 60.483 50.000 0.00 0.00 0.00 3.85
3744 3957 1.867233 CCAGATTCCGGCTATGAAACG 59.133 52.381 0.00 0.00 0.00 3.60
3745 3958 3.194005 TCCAGATTCCGGCTATGAAAC 57.806 47.619 0.00 0.00 0.00 2.78
3746 3959 4.437682 AATCCAGATTCCGGCTATGAAA 57.562 40.909 0.00 0.00 0.00 2.69
3747 3960 4.136796 CAAATCCAGATTCCGGCTATGAA 58.863 43.478 0.00 0.00 0.00 2.57
3748 3961 3.743521 CAAATCCAGATTCCGGCTATGA 58.256 45.455 0.00 0.00 0.00 2.15
3749 3962 2.227388 GCAAATCCAGATTCCGGCTATG 59.773 50.000 0.00 0.00 0.00 2.23
3750 3963 2.508526 GCAAATCCAGATTCCGGCTAT 58.491 47.619 0.00 0.00 0.00 2.97
3751 3964 1.810031 CGCAAATCCAGATTCCGGCTA 60.810 52.381 0.00 0.00 0.00 3.93
3752 3965 1.097547 CGCAAATCCAGATTCCGGCT 61.098 55.000 0.00 0.00 0.00 5.52
3753 3966 1.095228 TCGCAAATCCAGATTCCGGC 61.095 55.000 0.00 7.26 0.00 6.13
3754 3967 1.597742 ATCGCAAATCCAGATTCCGG 58.402 50.000 0.00 0.00 0.00 5.14
3755 3968 3.548818 GGAAATCGCAAATCCAGATTCCG 60.549 47.826 0.00 0.97 33.94 4.30
3756 3969 3.381272 TGGAAATCGCAAATCCAGATTCC 59.619 43.478 0.00 0.00 38.30 3.01
3757 3970 4.354587 GTGGAAATCGCAAATCCAGATTC 58.645 43.478 0.00 0.00 43.59 2.52
3758 3971 3.181497 CGTGGAAATCGCAAATCCAGATT 60.181 43.478 0.00 0.00 43.59 2.40
3759 3972 2.355756 CGTGGAAATCGCAAATCCAGAT 59.644 45.455 0.00 0.00 43.59 2.90
3760 3973 1.737236 CGTGGAAATCGCAAATCCAGA 59.263 47.619 0.00 0.00 43.59 3.86
3761 3974 1.202177 CCGTGGAAATCGCAAATCCAG 60.202 52.381 0.00 0.00 43.59 3.86
3762 3975 0.808125 CCGTGGAAATCGCAAATCCA 59.192 50.000 0.00 0.00 40.84 3.41
3763 3976 1.064060 CTCCGTGGAAATCGCAAATCC 59.936 52.381 0.00 0.00 0.00 3.01
3764 3977 2.006888 TCTCCGTGGAAATCGCAAATC 58.993 47.619 0.00 0.00 0.00 2.17
3765 3978 2.107950 TCTCCGTGGAAATCGCAAAT 57.892 45.000 0.00 0.00 0.00 2.32
3766 3979 1.804151 CTTCTCCGTGGAAATCGCAAA 59.196 47.619 0.00 0.00 0.00 3.68
3767 3980 1.438651 CTTCTCCGTGGAAATCGCAA 58.561 50.000 0.00 0.00 0.00 4.85
3768 3981 0.391130 CCTTCTCCGTGGAAATCGCA 60.391 55.000 0.00 0.00 0.00 5.10
3769 3982 1.090052 CCCTTCTCCGTGGAAATCGC 61.090 60.000 0.00 0.00 0.00 4.58
3770 3983 0.535335 TCCCTTCTCCGTGGAAATCG 59.465 55.000 0.00 0.00 0.00 3.34
3771 3984 1.555533 ACTCCCTTCTCCGTGGAAATC 59.444 52.381 0.00 0.00 0.00 2.17
3772 3985 1.657804 ACTCCCTTCTCCGTGGAAAT 58.342 50.000 0.00 0.00 0.00 2.17
3773 3986 1.430992 AACTCCCTTCTCCGTGGAAA 58.569 50.000 0.00 0.00 0.00 3.13
3774 3987 1.071699 CAAACTCCCTTCTCCGTGGAA 59.928 52.381 0.00 0.00 0.00 3.53
3775 3988 0.685097 CAAACTCCCTTCTCCGTGGA 59.315 55.000 0.00 0.00 0.00 4.02
3776 3989 0.396811 ACAAACTCCCTTCTCCGTGG 59.603 55.000 0.00 0.00 0.00 4.94
3777 3990 1.070134 TCACAAACTCCCTTCTCCGTG 59.930 52.381 0.00 0.00 0.00 4.94
3778 3991 1.344763 CTCACAAACTCCCTTCTCCGT 59.655 52.381 0.00 0.00 0.00 4.69
3779 3992 1.941668 GCTCACAAACTCCCTTCTCCG 60.942 57.143 0.00 0.00 0.00 4.63
3780 3993 1.349357 AGCTCACAAACTCCCTTCTCC 59.651 52.381 0.00 0.00 0.00 3.71
3781 3994 2.614229 GGAGCTCACAAACTCCCTTCTC 60.614 54.545 17.19 0.00 45.71 2.87
3782 3995 1.349357 GGAGCTCACAAACTCCCTTCT 59.651 52.381 17.19 0.00 45.71 2.85
3783 3996 1.814793 GGAGCTCACAAACTCCCTTC 58.185 55.000 17.19 0.00 45.71 3.46
3798 4011 3.418068 GTGCACGTGAGCTGGAGC 61.418 66.667 22.23 0.67 42.49 4.70
3799 4012 2.740055 GGTGCACGTGAGCTGGAG 60.740 66.667 22.23 0.00 34.99 3.86
3800 4013 2.395988 AATGGTGCACGTGAGCTGGA 62.396 55.000 22.23 0.00 34.99 3.86
3801 4014 1.518056 AAATGGTGCACGTGAGCTGG 61.518 55.000 22.23 0.00 34.99 4.85
3802 4015 0.386352 CAAATGGTGCACGTGAGCTG 60.386 55.000 22.23 5.32 34.99 4.24
3803 4016 1.951510 CAAATGGTGCACGTGAGCT 59.048 52.632 22.23 0.00 34.99 4.09
3804 4017 4.539152 CAAATGGTGCACGTGAGC 57.461 55.556 22.23 14.34 0.00 4.26
3841 4054 9.905171 GCTAAAAGAATTCAGACTTCTTGAATT 57.095 29.630 14.73 11.69 41.01 2.17
3842 4055 9.071276 TGCTAAAAGAATTCAGACTTCTTGAAT 57.929 29.630 14.73 8.40 41.01 2.57
3843 4056 8.450578 TGCTAAAAGAATTCAGACTTCTTGAA 57.549 30.769 14.73 6.95 41.01 2.69
3844 4057 8.345565 GTTGCTAAAAGAATTCAGACTTCTTGA 58.654 33.333 14.73 7.08 41.01 3.02
3845 4058 8.131100 TGTTGCTAAAAGAATTCAGACTTCTTG 58.869 33.333 14.73 5.85 41.01 3.02
3846 4059 8.225603 TGTTGCTAAAAGAATTCAGACTTCTT 57.774 30.769 8.44 9.45 43.10 2.52
3847 4060 7.807977 TGTTGCTAAAAGAATTCAGACTTCT 57.192 32.000 8.44 0.00 34.46 2.85
3848 4061 8.746751 GTTTGTTGCTAAAAGAATTCAGACTTC 58.253 33.333 8.44 0.00 0.00 3.01
3849 4062 8.250332 TGTTTGTTGCTAAAAGAATTCAGACTT 58.750 29.630 8.44 0.00 0.00 3.01
3850 4063 7.771183 TGTTTGTTGCTAAAAGAATTCAGACT 58.229 30.769 8.44 0.00 0.00 3.24
3851 4064 7.985634 TGTTTGTTGCTAAAAGAATTCAGAC 57.014 32.000 8.44 0.00 0.00 3.51
3852 4065 9.033481 CAATGTTTGTTGCTAAAAGAATTCAGA 57.967 29.630 8.44 0.00 0.00 3.27
3853 4066 9.033481 TCAATGTTTGTTGCTAAAAGAATTCAG 57.967 29.630 8.44 0.00 0.00 3.02
3854 4067 8.939201 TCAATGTTTGTTGCTAAAAGAATTCA 57.061 26.923 8.44 0.00 0.00 2.57
3855 4068 9.801714 CATCAATGTTTGTTGCTAAAAGAATTC 57.198 29.630 0.00 0.00 0.00 2.17
3856 4069 9.328845 ACATCAATGTTTGTTGCTAAAAGAATT 57.671 25.926 0.00 0.00 37.90 2.17
3857 4070 8.767085 CACATCAATGTTTGTTGCTAAAAGAAT 58.233 29.630 0.00 0.00 39.39 2.40
3858 4071 7.763528 ACACATCAATGTTTGTTGCTAAAAGAA 59.236 29.630 0.00 0.00 39.39 2.52
3859 4072 7.222417 CACACATCAATGTTTGTTGCTAAAAGA 59.778 33.333 1.90 0.00 39.39 2.52
3860 4073 7.010367 ACACACATCAATGTTTGTTGCTAAAAG 59.990 33.333 8.69 0.00 46.18 2.27
3861 4074 6.815641 ACACACATCAATGTTTGTTGCTAAAA 59.184 30.769 8.69 0.00 46.18 1.52
3862 4075 6.336566 ACACACATCAATGTTTGTTGCTAAA 58.663 32.000 8.69 0.00 46.18 1.85
3863 4076 5.900425 ACACACATCAATGTTTGTTGCTAA 58.100 33.333 8.69 0.00 46.18 3.09
3864 4077 5.512753 ACACACATCAATGTTTGTTGCTA 57.487 34.783 8.69 0.00 46.18 3.49
3865 4078 4.389890 ACACACATCAATGTTTGTTGCT 57.610 36.364 8.69 0.00 46.18 3.91
3870 4083 4.206814 CCGTGAAACACACATCAATGTTTG 59.793 41.667 7.06 7.54 46.40 2.93
3890 4103 2.392974 GGAAAATACGCACGCCCGT 61.393 57.895 6.22 6.22 44.62 5.28
3891 4104 2.401990 GGAAAATACGCACGCCCG 59.598 61.111 0.00 0.00 0.00 6.13
3892 4105 1.381165 ATGGGAAAATACGCACGCCC 61.381 55.000 0.00 0.00 35.70 6.13
3893 4106 0.454196 AATGGGAAAATACGCACGCC 59.546 50.000 0.00 0.00 35.70 5.68
3894 4107 1.544686 CAATGGGAAAATACGCACGC 58.455 50.000 0.00 0.00 35.70 5.34
3895 4108 1.740585 TCCAATGGGAAAATACGCACG 59.259 47.619 0.00 0.00 41.32 5.34
3909 4122 3.257375 CCTCCACATATGCCATTCCAATG 59.743 47.826 1.58 0.00 36.17 2.82
3910 4123 3.117016 ACCTCCACATATGCCATTCCAAT 60.117 43.478 1.58 0.00 0.00 3.16
3911 4124 2.244510 ACCTCCACATATGCCATTCCAA 59.755 45.455 1.58 0.00 0.00 3.53
3912 4125 1.852309 ACCTCCACATATGCCATTCCA 59.148 47.619 1.58 0.00 0.00 3.53
3913 4126 2.664402 ACCTCCACATATGCCATTCC 57.336 50.000 1.58 0.00 0.00 3.01
3914 4127 3.953612 TCAAACCTCCACATATGCCATTC 59.046 43.478 1.58 0.00 0.00 2.67
3915 4128 3.979911 TCAAACCTCCACATATGCCATT 58.020 40.909 1.58 0.00 0.00 3.16
3916 4129 3.668141 TCAAACCTCCACATATGCCAT 57.332 42.857 1.58 0.00 0.00 4.40
3917 4130 3.448093 TTCAAACCTCCACATATGCCA 57.552 42.857 1.58 0.00 0.00 4.92
3918 4131 4.799564 TTTTCAAACCTCCACATATGCC 57.200 40.909 1.58 0.00 0.00 4.40
3919 4132 6.024552 TCTTTTTCAAACCTCCACATATGC 57.975 37.500 1.58 0.00 0.00 3.14
3920 4133 8.885494 TTTTCTTTTTCAAACCTCCACATATG 57.115 30.769 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.