Multiple sequence alignment - TraesCS5A01G205300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G205300 chr5A 100.000 2249 0 0 1 2249 415194606 415192358 0.000000e+00 4154
1 TraesCS5A01G205300 chr5A 86.430 479 49 7 7 480 641776273 641776740 5.540000e-141 510
2 TraesCS5A01G205300 chr5D 87.097 1829 102 46 476 2249 319207937 319209686 0.000000e+00 1947
3 TraesCS5A01G205300 chr5B 85.054 1298 85 31 476 1729 369364832 369366064 0.000000e+00 1221
4 TraesCS5A01G205300 chr5B 90.421 522 30 10 1744 2249 369366476 369366993 0.000000e+00 669
5 TraesCS5A01G205300 chr2A 95.248 484 23 0 1 484 6267341 6267824 0.000000e+00 767
6 TraesCS5A01G205300 chr2A 94.421 484 26 1 1 484 6074504 6074986 0.000000e+00 743
7 TraesCS5A01G205300 chr2A 94.421 484 26 1 1 484 6127273 6127755 0.000000e+00 743
8 TraesCS5A01G205300 chr2A 94.215 484 27 1 1 484 6178312 6178794 0.000000e+00 737
9 TraesCS5A01G205300 chr3D 94.118 476 23 2 5 479 126611705 126611234 0.000000e+00 719
10 TraesCS5A01G205300 chr3D 91.344 439 36 2 1 438 489734224 489734661 1.150000e-167 599
11 TraesCS5A01G205300 chr4D 88.589 482 49 3 1 478 464865392 464865871 4.160000e-162 580
12 TraesCS5A01G205300 chr2D 85.890 489 60 6 4 485 639615173 639614687 1.540000e-141 512
13 TraesCS5A01G205300 chr3B 83.740 123 19 1 357 479 543187540 543187661 5.080000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G205300 chr5A 415192358 415194606 2248 True 4154 4154 100.0000 1 2249 1 chr5A.!!$R1 2248
1 TraesCS5A01G205300 chr5D 319207937 319209686 1749 False 1947 1947 87.0970 476 2249 1 chr5D.!!$F1 1773
2 TraesCS5A01G205300 chr5B 369364832 369366993 2161 False 945 1221 87.7375 476 2249 2 chr5B.!!$F1 1773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.108615 GCTCCTCTTGCTCGTTGCTA 60.109 55.0 5.0 0.0 43.37 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1659 1725 0.039798 GGATGCGAACGCGACCTATA 60.04 55.0 15.93 0.0 45.51 1.31 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.637483 ACCTGCCATAAATGAATTGACG 57.363 40.909 0.00 0.00 0.00 4.35
23 24 3.381272 ACCTGCCATAAATGAATTGACGG 59.619 43.478 0.00 0.00 0.00 4.79
24 25 3.381272 CCTGCCATAAATGAATTGACGGT 59.619 43.478 0.00 0.00 0.00 4.83
25 26 4.353737 CTGCCATAAATGAATTGACGGTG 58.646 43.478 0.00 0.00 0.00 4.94
26 27 3.115554 GCCATAAATGAATTGACGGTGC 58.884 45.455 0.00 0.00 0.00 5.01
27 28 3.362295 CCATAAATGAATTGACGGTGCG 58.638 45.455 0.00 0.00 0.00 5.34
28 29 2.535934 TAAATGAATTGACGGTGCGC 57.464 45.000 0.00 0.00 0.00 6.09
29 30 0.881118 AAATGAATTGACGGTGCGCT 59.119 45.000 9.73 0.00 0.00 5.92
30 31 0.447801 AATGAATTGACGGTGCGCTC 59.552 50.000 9.73 4.47 0.00 5.03
31 32 1.369091 ATGAATTGACGGTGCGCTCC 61.369 55.000 18.51 18.51 0.00 4.70
32 33 1.741770 GAATTGACGGTGCGCTCCT 60.742 57.895 24.75 12.75 0.00 3.69
33 34 1.696832 GAATTGACGGTGCGCTCCTC 61.697 60.000 24.75 19.88 0.00 3.71
34 35 2.172483 AATTGACGGTGCGCTCCTCT 62.172 55.000 24.75 10.76 0.00 3.69
35 36 2.172483 ATTGACGGTGCGCTCCTCTT 62.172 55.000 24.75 10.06 0.00 2.85
36 37 2.811317 GACGGTGCGCTCCTCTTG 60.811 66.667 24.75 12.51 0.00 3.02
38 39 4.749310 CGGTGCGCTCCTCTTGCT 62.749 66.667 24.75 0.00 0.00 3.91
39 40 2.817396 GGTGCGCTCCTCTTGCTC 60.817 66.667 20.97 0.00 0.00 4.26
40 41 3.184683 GTGCGCTCCTCTTGCTCG 61.185 66.667 9.73 0.00 0.00 5.03
41 42 3.684990 TGCGCTCCTCTTGCTCGT 61.685 61.111 9.73 0.00 0.00 4.18
42 43 2.433318 GCGCTCCTCTTGCTCGTT 60.433 61.111 0.00 0.00 0.00 3.85
43 44 2.734673 GCGCTCCTCTTGCTCGTTG 61.735 63.158 0.00 0.00 0.00 4.10
44 45 2.734673 CGCTCCTCTTGCTCGTTGC 61.735 63.158 0.00 0.00 43.25 4.17
45 46 1.375268 GCTCCTCTTGCTCGTTGCT 60.375 57.895 5.00 0.00 43.37 3.91
46 47 0.108615 GCTCCTCTTGCTCGTTGCTA 60.109 55.000 5.00 0.00 43.37 3.49
47 48 1.919918 CTCCTCTTGCTCGTTGCTAG 58.080 55.000 7.84 7.84 44.01 3.42
48 49 0.532573 TCCTCTTGCTCGTTGCTAGG 59.467 55.000 12.23 11.37 43.12 3.02
49 50 0.247736 CCTCTTGCTCGTTGCTAGGT 59.752 55.000 12.23 0.00 43.12 3.08
50 51 1.476891 CCTCTTGCTCGTTGCTAGGTA 59.523 52.381 12.23 0.00 43.12 3.08
51 52 2.101582 CCTCTTGCTCGTTGCTAGGTAT 59.898 50.000 12.23 0.00 43.12 2.73
52 53 3.119291 CTCTTGCTCGTTGCTAGGTATG 58.881 50.000 12.23 1.84 43.12 2.39
53 54 2.496070 TCTTGCTCGTTGCTAGGTATGT 59.504 45.455 12.23 0.00 43.12 2.29
54 55 2.579207 TGCTCGTTGCTAGGTATGTC 57.421 50.000 0.00 0.00 43.37 3.06
55 56 2.100197 TGCTCGTTGCTAGGTATGTCT 58.900 47.619 0.00 0.00 43.37 3.41
56 57 3.284617 TGCTCGTTGCTAGGTATGTCTA 58.715 45.455 0.00 0.00 43.37 2.59
57 58 3.697542 TGCTCGTTGCTAGGTATGTCTAA 59.302 43.478 0.00 0.00 43.37 2.10
58 59 4.341235 TGCTCGTTGCTAGGTATGTCTAAT 59.659 41.667 0.00 0.00 43.37 1.73
59 60 5.163447 TGCTCGTTGCTAGGTATGTCTAATT 60.163 40.000 0.00 0.00 43.37 1.40
60 61 5.402867 GCTCGTTGCTAGGTATGTCTAATTC 59.597 44.000 0.00 0.00 38.95 2.17
61 62 6.710597 TCGTTGCTAGGTATGTCTAATTCT 57.289 37.500 0.00 0.00 0.00 2.40
62 63 6.504398 TCGTTGCTAGGTATGTCTAATTCTG 58.496 40.000 0.00 0.00 0.00 3.02
63 64 5.692204 CGTTGCTAGGTATGTCTAATTCTGG 59.308 44.000 0.00 0.00 0.00 3.86
64 65 6.461092 CGTTGCTAGGTATGTCTAATTCTGGA 60.461 42.308 0.00 0.00 0.00 3.86
65 66 6.656632 TGCTAGGTATGTCTAATTCTGGAG 57.343 41.667 0.00 0.00 0.00 3.86
66 67 6.136857 TGCTAGGTATGTCTAATTCTGGAGT 58.863 40.000 0.00 0.00 0.00 3.85
67 68 6.611642 TGCTAGGTATGTCTAATTCTGGAGTT 59.388 38.462 0.00 0.00 0.00 3.01
68 69 7.783119 TGCTAGGTATGTCTAATTCTGGAGTTA 59.217 37.037 0.00 0.00 0.00 2.24
69 70 8.639761 GCTAGGTATGTCTAATTCTGGAGTTAA 58.360 37.037 0.00 0.00 0.00 2.01
70 71 9.968870 CTAGGTATGTCTAATTCTGGAGTTAAC 57.031 37.037 0.00 0.00 0.00 2.01
71 72 8.375493 AGGTATGTCTAATTCTGGAGTTAACA 57.625 34.615 8.61 0.00 0.00 2.41
72 73 8.822805 AGGTATGTCTAATTCTGGAGTTAACAA 58.177 33.333 8.61 0.00 0.00 2.83
73 74 9.444600 GGTATGTCTAATTCTGGAGTTAACAAA 57.555 33.333 8.61 0.00 0.00 2.83
76 77 9.739276 ATGTCTAATTCTGGAGTTAACAAATCA 57.261 29.630 8.61 0.00 0.00 2.57
77 78 9.219603 TGTCTAATTCTGGAGTTAACAAATCAG 57.780 33.333 8.61 9.26 0.00 2.90
78 79 8.178313 GTCTAATTCTGGAGTTAACAAATCAGC 58.822 37.037 8.61 0.00 0.00 4.26
79 80 8.103305 TCTAATTCTGGAGTTAACAAATCAGCT 58.897 33.333 8.61 0.00 0.00 4.24
80 81 7.530426 AATTCTGGAGTTAACAAATCAGCTT 57.470 32.000 8.61 4.57 0.00 3.74
81 82 5.947228 TCTGGAGTTAACAAATCAGCTTG 57.053 39.130 8.61 0.00 0.00 4.01
82 83 5.620206 TCTGGAGTTAACAAATCAGCTTGA 58.380 37.500 8.61 0.00 0.00 3.02
83 84 6.240894 TCTGGAGTTAACAAATCAGCTTGAT 58.759 36.000 8.61 0.00 39.09 2.57
84 85 6.149973 TCTGGAGTTAACAAATCAGCTTGATG 59.850 38.462 8.61 0.00 37.15 3.07
85 86 5.769662 TGGAGTTAACAAATCAGCTTGATGT 59.230 36.000 8.61 0.00 37.15 3.06
86 87 6.072508 TGGAGTTAACAAATCAGCTTGATGTC 60.073 38.462 8.61 0.00 37.15 3.06
87 88 6.072508 GGAGTTAACAAATCAGCTTGATGTCA 60.073 38.462 8.61 0.00 37.15 3.58
88 89 7.362401 GGAGTTAACAAATCAGCTTGATGTCAT 60.362 37.037 8.61 0.00 37.15 3.06
89 90 7.310664 AGTTAACAAATCAGCTTGATGTCATG 58.689 34.615 8.61 0.00 37.15 3.07
90 91 5.970317 AACAAATCAGCTTGATGTCATGA 57.030 34.783 0.00 0.00 37.15 3.07
91 92 6.525578 AACAAATCAGCTTGATGTCATGAT 57.474 33.333 0.00 0.00 37.15 2.45
92 93 7.634671 AACAAATCAGCTTGATGTCATGATA 57.365 32.000 0.00 0.00 37.15 2.15
93 94 7.634671 ACAAATCAGCTTGATGTCATGATAA 57.365 32.000 0.00 0.00 37.15 1.75
94 95 8.234136 ACAAATCAGCTTGATGTCATGATAAT 57.766 30.769 0.00 0.00 37.15 1.28
95 96 8.135529 ACAAATCAGCTTGATGTCATGATAATG 58.864 33.333 0.00 5.26 37.15 1.90
96 97 7.818997 AATCAGCTTGATGTCATGATAATGT 57.181 32.000 0.00 0.00 37.15 2.71
97 98 8.913487 AATCAGCTTGATGTCATGATAATGTA 57.087 30.769 0.00 0.00 37.15 2.29
98 99 9.516546 AATCAGCTTGATGTCATGATAATGTAT 57.483 29.630 0.00 0.00 37.15 2.29
99 100 8.319143 TCAGCTTGATGTCATGATAATGTATG 57.681 34.615 0.00 0.00 0.00 2.39
100 101 7.935210 TCAGCTTGATGTCATGATAATGTATGT 59.065 33.333 0.00 0.00 0.00 2.29
101 102 8.565416 CAGCTTGATGTCATGATAATGTATGTT 58.435 33.333 0.00 0.00 0.00 2.71
102 103 9.128404 AGCTTGATGTCATGATAATGTATGTTT 57.872 29.630 0.00 0.00 0.00 2.83
103 104 9.177304 GCTTGATGTCATGATAATGTATGTTTG 57.823 33.333 0.00 0.00 0.00 2.93
104 105 9.177304 CTTGATGTCATGATAATGTATGTTTGC 57.823 33.333 0.00 0.00 0.00 3.68
105 106 8.454570 TGATGTCATGATAATGTATGTTTGCT 57.545 30.769 0.00 0.00 0.00 3.91
106 107 8.905850 TGATGTCATGATAATGTATGTTTGCTT 58.094 29.630 0.00 0.00 0.00 3.91
107 108 9.740239 GATGTCATGATAATGTATGTTTGCTTT 57.260 29.630 0.00 0.00 0.00 3.51
109 110 9.571810 TGTCATGATAATGTATGTTTGCTTTTC 57.428 29.630 0.00 0.00 0.00 2.29
110 111 9.793252 GTCATGATAATGTATGTTTGCTTTTCT 57.207 29.630 0.00 0.00 0.00 2.52
114 115 9.409312 TGATAATGTATGTTTGCTTTTCTTGTG 57.591 29.630 0.00 0.00 0.00 3.33
115 116 9.410556 GATAATGTATGTTTGCTTTTCTTGTGT 57.589 29.630 0.00 0.00 0.00 3.72
116 117 9.762933 ATAATGTATGTTTGCTTTTCTTGTGTT 57.237 25.926 0.00 0.00 0.00 3.32
117 118 7.698836 ATGTATGTTTGCTTTTCTTGTGTTC 57.301 32.000 0.00 0.00 0.00 3.18
118 119 6.625362 TGTATGTTTGCTTTTCTTGTGTTCA 58.375 32.000 0.00 0.00 0.00 3.18
119 120 6.751425 TGTATGTTTGCTTTTCTTGTGTTCAG 59.249 34.615 0.00 0.00 0.00 3.02
120 121 4.493547 TGTTTGCTTTTCTTGTGTTCAGG 58.506 39.130 0.00 0.00 0.00 3.86
121 122 4.219507 TGTTTGCTTTTCTTGTGTTCAGGA 59.780 37.500 0.00 0.00 0.00 3.86
122 123 5.167845 GTTTGCTTTTCTTGTGTTCAGGAA 58.832 37.500 0.00 0.00 37.77 3.36
123 124 5.398603 TTGCTTTTCTTGTGTTCAGGAAA 57.601 34.783 2.32 2.32 44.09 3.13
124 125 4.997565 TGCTTTTCTTGTGTTCAGGAAAG 58.002 39.130 5.86 0.00 45.49 2.62
125 126 4.462483 TGCTTTTCTTGTGTTCAGGAAAGT 59.538 37.500 3.27 0.00 45.49 2.66
126 127 4.800471 GCTTTTCTTGTGTTCAGGAAAGTG 59.200 41.667 3.27 5.27 45.49 3.16
127 128 4.981806 TTTCTTGTGTTCAGGAAAGTGG 57.018 40.909 2.32 0.00 42.07 4.00
128 129 2.297701 TCTTGTGTTCAGGAAAGTGGC 58.702 47.619 0.00 0.00 0.00 5.01
129 130 2.092429 TCTTGTGTTCAGGAAAGTGGCT 60.092 45.455 0.00 0.00 0.00 4.75
130 131 2.435372 TGTGTTCAGGAAAGTGGCTT 57.565 45.000 0.00 0.00 0.00 4.35
131 132 2.023673 TGTGTTCAGGAAAGTGGCTTG 58.976 47.619 0.00 0.00 0.00 4.01
132 133 1.338020 GTGTTCAGGAAAGTGGCTTGG 59.662 52.381 0.00 0.00 0.00 3.61
133 134 0.315251 GTTCAGGAAAGTGGCTTGGC 59.685 55.000 0.00 0.00 0.00 4.52
149 150 3.580916 GCCACCGCCAAATTCGTA 58.419 55.556 0.00 0.00 0.00 3.43
150 151 1.135939 GCCACCGCCAAATTCGTAC 59.864 57.895 0.00 0.00 0.00 3.67
151 152 1.798087 CCACCGCCAAATTCGTACC 59.202 57.895 0.00 0.00 0.00 3.34
152 153 1.650314 CCACCGCCAAATTCGTACCC 61.650 60.000 0.00 0.00 0.00 3.69
153 154 0.675522 CACCGCCAAATTCGTACCCT 60.676 55.000 0.00 0.00 0.00 4.34
154 155 0.675522 ACCGCCAAATTCGTACCCTG 60.676 55.000 0.00 0.00 0.00 4.45
155 156 0.391927 CCGCCAAATTCGTACCCTGA 60.392 55.000 0.00 0.00 0.00 3.86
156 157 1.006832 CGCCAAATTCGTACCCTGAG 58.993 55.000 0.00 0.00 0.00 3.35
157 158 1.674817 CGCCAAATTCGTACCCTGAGT 60.675 52.381 0.00 0.00 0.00 3.41
158 159 2.433436 GCCAAATTCGTACCCTGAGTT 58.567 47.619 0.00 0.00 0.00 3.01
159 160 2.817844 GCCAAATTCGTACCCTGAGTTT 59.182 45.455 0.00 0.00 0.00 2.66
160 161 3.254903 GCCAAATTCGTACCCTGAGTTTT 59.745 43.478 0.00 0.00 0.00 2.43
161 162 4.261867 GCCAAATTCGTACCCTGAGTTTTT 60.262 41.667 0.00 0.00 0.00 1.94
162 163 5.048573 GCCAAATTCGTACCCTGAGTTTTTA 60.049 40.000 0.00 0.00 0.00 1.52
163 164 6.608610 CCAAATTCGTACCCTGAGTTTTTAG 58.391 40.000 0.00 0.00 0.00 1.85
164 165 6.349033 CCAAATTCGTACCCTGAGTTTTTAGG 60.349 42.308 0.00 0.00 0.00 2.69
165 166 4.961438 TTCGTACCCTGAGTTTTTAGGT 57.039 40.909 0.00 0.00 31.99 3.08
166 167 4.961438 TCGTACCCTGAGTTTTTAGGTT 57.039 40.909 0.00 0.00 31.99 3.50
167 168 6.418057 TTCGTACCCTGAGTTTTTAGGTTA 57.582 37.500 0.00 0.00 31.99 2.85
168 169 5.783111 TCGTACCCTGAGTTTTTAGGTTAC 58.217 41.667 0.00 0.00 30.98 2.50
169 170 4.931601 CGTACCCTGAGTTTTTAGGTTACC 59.068 45.833 0.00 0.00 30.65 2.85
170 171 5.511202 CGTACCCTGAGTTTTTAGGTTACCA 60.511 44.000 3.51 0.00 30.65 3.25
171 172 4.981812 ACCCTGAGTTTTTAGGTTACCAG 58.018 43.478 3.51 0.00 31.99 4.00
172 173 4.414514 ACCCTGAGTTTTTAGGTTACCAGT 59.585 41.667 3.51 0.00 31.99 4.00
173 174 5.103813 ACCCTGAGTTTTTAGGTTACCAGTT 60.104 40.000 3.51 0.00 31.99 3.16
174 175 5.240844 CCCTGAGTTTTTAGGTTACCAGTTG 59.759 44.000 3.51 0.00 31.99 3.16
175 176 6.059484 CCTGAGTTTTTAGGTTACCAGTTGA 58.941 40.000 3.51 0.00 0.00 3.18
176 177 6.017357 CCTGAGTTTTTAGGTTACCAGTTGAC 60.017 42.308 3.51 0.00 0.00 3.18
177 178 6.655930 TGAGTTTTTAGGTTACCAGTTGACT 58.344 36.000 3.51 1.80 0.00 3.41
178 179 6.540914 TGAGTTTTTAGGTTACCAGTTGACTG 59.459 38.462 3.51 4.15 43.40 3.51
179 180 6.655930 AGTTTTTAGGTTACCAGTTGACTGA 58.344 36.000 12.54 0.00 46.59 3.41
180 181 7.287810 AGTTTTTAGGTTACCAGTTGACTGAT 58.712 34.615 12.54 0.00 46.59 2.90
181 182 7.444487 AGTTTTTAGGTTACCAGTTGACTGATC 59.556 37.037 12.54 0.00 46.59 2.92
182 183 6.681729 TTTAGGTTACCAGTTGACTGATCT 57.318 37.500 12.54 1.60 46.59 2.75
183 184 6.681729 TTAGGTTACCAGTTGACTGATCTT 57.318 37.500 12.54 0.00 46.59 2.40
184 185 7.786046 TTAGGTTACCAGTTGACTGATCTTA 57.214 36.000 12.54 0.00 46.59 2.10
185 186 6.681729 AGGTTACCAGTTGACTGATCTTAA 57.318 37.500 12.54 2.57 46.59 1.85
186 187 7.259088 AGGTTACCAGTTGACTGATCTTAAT 57.741 36.000 12.54 0.00 46.59 1.40
187 188 7.106239 AGGTTACCAGTTGACTGATCTTAATG 58.894 38.462 12.54 0.00 46.59 1.90
188 189 6.879458 GGTTACCAGTTGACTGATCTTAATGT 59.121 38.462 12.54 2.39 46.59 2.71
189 190 7.148407 GGTTACCAGTTGACTGATCTTAATGTG 60.148 40.741 12.54 0.00 46.59 3.21
190 191 6.114187 ACCAGTTGACTGATCTTAATGTGA 57.886 37.500 12.54 0.00 46.59 3.58
191 192 6.169094 ACCAGTTGACTGATCTTAATGTGAG 58.831 40.000 12.54 0.00 46.59 3.51
192 193 6.169094 CCAGTTGACTGATCTTAATGTGAGT 58.831 40.000 12.54 0.00 46.59 3.41
193 194 6.091849 CCAGTTGACTGATCTTAATGTGAGTG 59.908 42.308 12.54 0.00 46.59 3.51
194 195 5.641209 AGTTGACTGATCTTAATGTGAGTGC 59.359 40.000 0.00 0.00 0.00 4.40
195 196 5.411831 TGACTGATCTTAATGTGAGTGCT 57.588 39.130 0.00 0.00 0.00 4.40
196 197 6.530019 TGACTGATCTTAATGTGAGTGCTA 57.470 37.500 0.00 0.00 0.00 3.49
197 198 7.117285 TGACTGATCTTAATGTGAGTGCTAT 57.883 36.000 0.00 0.00 0.00 2.97
198 199 7.205992 TGACTGATCTTAATGTGAGTGCTATC 58.794 38.462 0.00 0.00 0.00 2.08
199 200 7.069208 TGACTGATCTTAATGTGAGTGCTATCT 59.931 37.037 0.00 0.00 0.00 1.98
200 201 7.790027 ACTGATCTTAATGTGAGTGCTATCTT 58.210 34.615 0.00 0.00 0.00 2.40
201 202 8.918116 ACTGATCTTAATGTGAGTGCTATCTTA 58.082 33.333 0.00 0.00 0.00 2.10
202 203 9.409312 CTGATCTTAATGTGAGTGCTATCTTAG 57.591 37.037 0.00 0.00 0.00 2.18
203 204 8.918116 TGATCTTAATGTGAGTGCTATCTTAGT 58.082 33.333 0.00 0.00 0.00 2.24
204 205 9.757227 GATCTTAATGTGAGTGCTATCTTAGTT 57.243 33.333 0.00 0.00 0.00 2.24
236 237 9.330063 TGTTCTTTCCTGATATACATGAATGAC 57.670 33.333 0.00 0.00 37.19 3.06
237 238 9.330063 GTTCTTTCCTGATATACATGAATGACA 57.670 33.333 0.00 0.00 37.19 3.58
238 239 8.893219 TCTTTCCTGATATACATGAATGACAC 57.107 34.615 0.00 0.00 34.82 3.67
239 240 8.708378 TCTTTCCTGATATACATGAATGACACT 58.292 33.333 0.00 0.00 34.82 3.55
240 241 9.334947 CTTTCCTGATATACATGAATGACACTT 57.665 33.333 0.00 0.00 34.26 3.16
241 242 9.685276 TTTCCTGATATACATGAATGACACTTT 57.315 29.630 0.00 0.00 34.26 2.66
242 243 8.893219 TCCTGATATACATGAATGACACTTTC 57.107 34.615 0.00 0.00 0.00 2.62
243 244 8.708378 TCCTGATATACATGAATGACACTTTCT 58.292 33.333 0.00 0.00 0.00 2.52
244 245 9.987272 CCTGATATACATGAATGACACTTTCTA 57.013 33.333 0.00 0.00 0.00 2.10
250 251 9.725019 ATACATGAATGACACTTTCTAGTTTGA 57.275 29.630 0.00 0.00 30.26 2.69
251 252 7.865707 ACATGAATGACACTTTCTAGTTTGAC 58.134 34.615 0.00 0.00 30.26 3.18
252 253 7.498900 ACATGAATGACACTTTCTAGTTTGACA 59.501 33.333 0.00 0.00 30.26 3.58
253 254 7.857734 TGAATGACACTTTCTAGTTTGACAA 57.142 32.000 0.00 0.00 30.26 3.18
254 255 8.450578 TGAATGACACTTTCTAGTTTGACAAT 57.549 30.769 0.00 0.00 30.26 2.71
255 256 8.344831 TGAATGACACTTTCTAGTTTGACAATG 58.655 33.333 0.00 0.00 30.26 2.82
256 257 8.450578 AATGACACTTTCTAGTTTGACAATGA 57.549 30.769 0.00 0.00 30.26 2.57
257 258 7.857734 TGACACTTTCTAGTTTGACAATGAA 57.142 32.000 0.00 0.00 30.26 2.57
258 259 8.450578 TGACACTTTCTAGTTTGACAATGAAT 57.549 30.769 0.00 0.00 30.26 2.57
259 260 9.554395 TGACACTTTCTAGTTTGACAATGAATA 57.446 29.630 0.00 0.00 30.26 1.75
268 269 9.345517 CTAGTTTGACAATGAATAATGTGTTGG 57.654 33.333 0.00 0.00 0.00 3.77
269 270 7.725251 AGTTTGACAATGAATAATGTGTTGGT 58.275 30.769 0.00 0.00 0.00 3.67
270 271 7.867403 AGTTTGACAATGAATAATGTGTTGGTC 59.133 33.333 0.00 0.00 0.00 4.02
271 272 7.523293 TTGACAATGAATAATGTGTTGGTCT 57.477 32.000 0.00 0.00 0.00 3.85
272 273 7.144722 TGACAATGAATAATGTGTTGGTCTC 57.855 36.000 0.00 0.00 0.00 3.36
273 274 6.942005 TGACAATGAATAATGTGTTGGTCTCT 59.058 34.615 0.00 0.00 0.00 3.10
274 275 7.448161 TGACAATGAATAATGTGTTGGTCTCTT 59.552 33.333 0.00 0.00 0.00 2.85
275 276 7.596494 ACAATGAATAATGTGTTGGTCTCTTG 58.404 34.615 0.00 0.00 0.00 3.02
276 277 7.448161 ACAATGAATAATGTGTTGGTCTCTTGA 59.552 33.333 0.00 0.00 0.00 3.02
277 278 8.464404 CAATGAATAATGTGTTGGTCTCTTGAT 58.536 33.333 0.00 0.00 0.00 2.57
278 279 9.685276 AATGAATAATGTGTTGGTCTCTTGATA 57.315 29.630 0.00 0.00 0.00 2.15
279 280 9.685276 ATGAATAATGTGTTGGTCTCTTGATAA 57.315 29.630 0.00 0.00 0.00 1.75
280 281 9.166173 TGAATAATGTGTTGGTCTCTTGATAAG 57.834 33.333 0.00 0.00 0.00 1.73
281 282 9.383519 GAATAATGTGTTGGTCTCTTGATAAGA 57.616 33.333 0.00 0.00 35.87 2.10
294 295 6.525578 TCTTGATAAGAGGTGTATGAACGT 57.474 37.500 0.00 0.00 32.71 3.99
295 296 6.330278 TCTTGATAAGAGGTGTATGAACGTG 58.670 40.000 0.00 0.00 32.71 4.49
296 297 5.006153 TGATAAGAGGTGTATGAACGTGG 57.994 43.478 0.00 0.00 0.00 4.94
297 298 4.464951 TGATAAGAGGTGTATGAACGTGGT 59.535 41.667 0.00 0.00 0.00 4.16
298 299 3.764237 AAGAGGTGTATGAACGTGGTT 57.236 42.857 0.00 0.00 0.00 3.67
299 300 3.764237 AGAGGTGTATGAACGTGGTTT 57.236 42.857 0.00 0.00 0.00 3.27
300 301 4.877378 AGAGGTGTATGAACGTGGTTTA 57.123 40.909 0.00 0.00 0.00 2.01
301 302 5.217978 AGAGGTGTATGAACGTGGTTTAA 57.782 39.130 0.00 0.00 0.00 1.52
302 303 5.613329 AGAGGTGTATGAACGTGGTTTAAA 58.387 37.500 0.00 0.00 0.00 1.52
303 304 6.056884 AGAGGTGTATGAACGTGGTTTAAAA 58.943 36.000 0.00 0.00 0.00 1.52
304 305 6.543100 AGAGGTGTATGAACGTGGTTTAAAAA 59.457 34.615 0.00 0.00 0.00 1.94
339 340 7.816945 ATGTTTGATTAGTGCTATTGTTTGC 57.183 32.000 0.00 0.00 0.00 3.68
340 341 6.743110 TGTTTGATTAGTGCTATTGTTTGCA 58.257 32.000 0.00 0.00 36.79 4.08
341 342 6.862608 TGTTTGATTAGTGCTATTGTTTGCAG 59.137 34.615 0.00 0.00 40.06 4.41
342 343 4.985413 TGATTAGTGCTATTGTTTGCAGC 58.015 39.130 0.00 0.00 40.06 5.25
343 344 4.701651 TGATTAGTGCTATTGTTTGCAGCT 59.298 37.500 0.00 0.00 40.06 4.24
344 345 5.879777 TGATTAGTGCTATTGTTTGCAGCTA 59.120 36.000 0.00 0.00 40.06 3.32
345 346 6.543465 TGATTAGTGCTATTGTTTGCAGCTAT 59.457 34.615 0.00 0.00 40.06 2.97
346 347 4.889832 AGTGCTATTGTTTGCAGCTATC 57.110 40.909 0.00 0.00 40.06 2.08
347 348 3.310774 AGTGCTATTGTTTGCAGCTATCG 59.689 43.478 0.00 0.00 40.06 2.92
348 349 3.309682 GTGCTATTGTTTGCAGCTATCGA 59.690 43.478 0.00 0.00 40.06 3.59
349 350 4.024556 GTGCTATTGTTTGCAGCTATCGAT 60.025 41.667 2.16 2.16 40.06 3.59
350 351 5.177511 GTGCTATTGTTTGCAGCTATCGATA 59.822 40.000 4.78 4.78 40.06 2.92
351 352 5.757808 TGCTATTGTTTGCAGCTATCGATAA 59.242 36.000 6.58 0.00 36.26 1.75
352 353 6.259829 TGCTATTGTTTGCAGCTATCGATAAA 59.740 34.615 6.58 0.00 36.26 1.40
353 354 6.794158 GCTATTGTTTGCAGCTATCGATAAAG 59.206 38.462 6.58 0.00 32.46 1.85
354 355 6.683974 ATTGTTTGCAGCTATCGATAAAGT 57.316 33.333 6.58 0.00 0.00 2.66
355 356 6.494893 TTGTTTGCAGCTATCGATAAAGTT 57.505 33.333 6.58 0.00 0.00 2.66
356 357 5.868257 TGTTTGCAGCTATCGATAAAGTTG 58.132 37.500 6.58 7.09 0.00 3.16
357 358 5.411361 TGTTTGCAGCTATCGATAAAGTTGT 59.589 36.000 6.58 0.00 0.00 3.32
358 359 5.469373 TTGCAGCTATCGATAAAGTTGTG 57.531 39.130 6.58 0.00 0.00 3.33
359 360 4.754322 TGCAGCTATCGATAAAGTTGTGA 58.246 39.130 6.58 0.00 0.00 3.58
360 361 5.359756 TGCAGCTATCGATAAAGTTGTGAT 58.640 37.500 6.58 0.00 0.00 3.06
361 362 6.512297 TGCAGCTATCGATAAAGTTGTGATA 58.488 36.000 6.58 0.00 0.00 2.15
362 363 7.154656 TGCAGCTATCGATAAAGTTGTGATAT 58.845 34.615 6.58 0.00 0.00 1.63
363 364 8.303876 TGCAGCTATCGATAAAGTTGTGATATA 58.696 33.333 6.58 0.00 0.00 0.86
364 365 9.307121 GCAGCTATCGATAAAGTTGTGATATAT 57.693 33.333 6.58 0.00 0.00 0.86
379 380 9.864034 GTTGTGATATATCTTTAACCATTGTCG 57.136 33.333 13.79 0.00 0.00 4.35
380 381 8.083462 TGTGATATATCTTTAACCATTGTCGC 57.917 34.615 13.79 0.00 0.00 5.19
381 382 7.931407 TGTGATATATCTTTAACCATTGTCGCT 59.069 33.333 13.79 0.00 0.00 4.93
382 383 8.774586 GTGATATATCTTTAACCATTGTCGCTT 58.225 33.333 13.79 0.00 0.00 4.68
383 384 8.773645 TGATATATCTTTAACCATTGTCGCTTG 58.226 33.333 13.79 0.00 0.00 4.01
384 385 8.677148 ATATATCTTTAACCATTGTCGCTTGT 57.323 30.769 0.00 0.00 0.00 3.16
385 386 4.742438 TCTTTAACCATTGTCGCTTGTC 57.258 40.909 0.00 0.00 0.00 3.18
386 387 4.385825 TCTTTAACCATTGTCGCTTGTCT 58.614 39.130 0.00 0.00 0.00 3.41
387 388 5.543714 TCTTTAACCATTGTCGCTTGTCTA 58.456 37.500 0.00 0.00 0.00 2.59
388 389 5.407387 TCTTTAACCATTGTCGCTTGTCTAC 59.593 40.000 0.00 0.00 0.00 2.59
389 390 2.831685 ACCATTGTCGCTTGTCTACA 57.168 45.000 0.00 0.00 0.00 2.74
390 391 2.413837 ACCATTGTCGCTTGTCTACAC 58.586 47.619 0.00 0.00 0.00 2.90
391 392 2.037251 ACCATTGTCGCTTGTCTACACT 59.963 45.455 0.00 0.00 0.00 3.55
392 393 2.413112 CCATTGTCGCTTGTCTACACTG 59.587 50.000 0.00 0.00 0.00 3.66
393 394 2.882927 TTGTCGCTTGTCTACACTGT 57.117 45.000 0.00 0.00 0.00 3.55
394 395 2.417339 TGTCGCTTGTCTACACTGTC 57.583 50.000 0.00 0.00 0.00 3.51
395 396 1.679153 TGTCGCTTGTCTACACTGTCA 59.321 47.619 0.00 0.00 0.00 3.58
396 397 2.287608 TGTCGCTTGTCTACACTGTCAG 60.288 50.000 0.00 0.00 0.00 3.51
397 398 1.063806 CGCTTGTCTACACTGTCAGC 58.936 55.000 0.00 0.00 0.00 4.26
398 399 1.063806 GCTTGTCTACACTGTCAGCG 58.936 55.000 0.00 0.00 0.00 5.18
399 400 1.063806 CTTGTCTACACTGTCAGCGC 58.936 55.000 0.00 0.00 0.00 5.92
400 401 0.663269 TTGTCTACACTGTCAGCGCG 60.663 55.000 0.00 0.00 0.00 6.86
401 402 1.081376 GTCTACACTGTCAGCGCGT 60.081 57.895 8.43 0.00 0.00 6.01
402 403 0.663568 GTCTACACTGTCAGCGCGTT 60.664 55.000 8.43 0.00 0.00 4.84
403 404 0.876399 TCTACACTGTCAGCGCGTTA 59.124 50.000 8.43 0.00 0.00 3.18
404 405 1.267533 TCTACACTGTCAGCGCGTTAA 59.732 47.619 8.43 0.00 0.00 2.01
405 406 1.385743 CTACACTGTCAGCGCGTTAAC 59.614 52.381 8.43 0.00 0.00 2.01
406 407 0.528901 ACACTGTCAGCGCGTTAACA 60.529 50.000 8.43 2.51 0.00 2.41
407 408 0.579630 CACTGTCAGCGCGTTAACAA 59.420 50.000 8.43 0.00 0.00 2.83
408 409 0.580104 ACTGTCAGCGCGTTAACAAC 59.420 50.000 8.43 0.00 0.00 3.32
409 410 0.859232 CTGTCAGCGCGTTAACAACT 59.141 50.000 8.43 0.00 0.00 3.16
410 411 2.055838 CTGTCAGCGCGTTAACAACTA 58.944 47.619 8.43 0.00 0.00 2.24
411 412 2.666508 CTGTCAGCGCGTTAACAACTAT 59.333 45.455 8.43 0.00 0.00 2.12
412 413 2.410392 TGTCAGCGCGTTAACAACTATG 59.590 45.455 8.43 0.00 0.00 2.23
413 414 1.996898 TCAGCGCGTTAACAACTATGG 59.003 47.619 8.43 0.00 0.00 2.74
414 415 1.996898 CAGCGCGTTAACAACTATGGA 59.003 47.619 8.43 0.00 0.00 3.41
415 416 2.413796 CAGCGCGTTAACAACTATGGAA 59.586 45.455 8.43 0.00 0.00 3.53
416 417 2.671396 AGCGCGTTAACAACTATGGAAG 59.329 45.455 8.43 0.00 0.00 3.46
417 418 2.786700 GCGCGTTAACAACTATGGAAGC 60.787 50.000 8.43 0.00 0.00 3.86
418 419 2.671396 CGCGTTAACAACTATGGAAGCT 59.329 45.455 6.39 0.00 0.00 3.74
419 420 3.124636 CGCGTTAACAACTATGGAAGCTT 59.875 43.478 0.00 0.00 0.00 3.74
420 421 4.403453 GCGTTAACAACTATGGAAGCTTG 58.597 43.478 2.10 0.00 0.00 4.01
421 422 4.153475 GCGTTAACAACTATGGAAGCTTGA 59.847 41.667 2.10 0.00 0.00 3.02
422 423 5.163754 GCGTTAACAACTATGGAAGCTTGAT 60.164 40.000 2.10 0.00 0.00 2.57
423 424 6.622896 GCGTTAACAACTATGGAAGCTTGATT 60.623 38.462 2.10 0.00 0.00 2.57
424 425 7.413657 GCGTTAACAACTATGGAAGCTTGATTA 60.414 37.037 2.10 0.00 0.00 1.75
425 426 8.116753 CGTTAACAACTATGGAAGCTTGATTAG 58.883 37.037 2.10 4.18 0.00 1.73
426 427 8.947115 GTTAACAACTATGGAAGCTTGATTAGT 58.053 33.333 2.10 4.85 0.00 2.24
427 428 6.992063 ACAACTATGGAAGCTTGATTAGTG 57.008 37.500 2.10 5.68 0.00 2.74
428 429 5.355350 ACAACTATGGAAGCTTGATTAGTGC 59.645 40.000 2.10 0.00 0.00 4.40
429 430 4.122776 ACTATGGAAGCTTGATTAGTGCG 58.877 43.478 2.10 0.00 0.00 5.34
430 431 1.086696 TGGAAGCTTGATTAGTGCGC 58.913 50.000 2.10 0.00 0.00 6.09
431 432 1.339055 TGGAAGCTTGATTAGTGCGCT 60.339 47.619 9.73 4.58 0.00 5.92
432 433 1.328986 GGAAGCTTGATTAGTGCGCTC 59.671 52.381 9.73 4.74 0.00 5.03
433 434 2.002586 GAAGCTTGATTAGTGCGCTCA 58.997 47.619 9.73 0.00 0.00 4.26
434 435 2.099141 AGCTTGATTAGTGCGCTCAA 57.901 45.000 9.73 8.98 0.00 3.02
435 436 2.636830 AGCTTGATTAGTGCGCTCAAT 58.363 42.857 9.73 7.84 0.00 2.57
436 437 3.797039 AGCTTGATTAGTGCGCTCAATA 58.203 40.909 9.73 0.00 0.00 1.90
437 438 4.191544 AGCTTGATTAGTGCGCTCAATAA 58.808 39.130 9.73 0.00 37.20 1.40
438 439 4.034510 AGCTTGATTAGTGCGCTCAATAAC 59.965 41.667 9.73 0.00 35.86 1.89
439 440 4.508971 CTTGATTAGTGCGCTCAATAACG 58.491 43.478 9.73 0.00 35.86 3.18
447 448 1.640428 CGCTCAATAACGCCTCAAGA 58.360 50.000 0.00 0.00 0.00 3.02
448 449 1.590238 CGCTCAATAACGCCTCAAGAG 59.410 52.381 0.00 0.00 0.00 2.85
457 458 4.020617 CCTCAAGAGGCGCCACCA 62.021 66.667 31.54 8.45 42.44 4.17
458 459 2.435586 CTCAAGAGGCGCCACCAG 60.436 66.667 31.54 17.73 43.14 4.00
459 460 3.965539 CTCAAGAGGCGCCACCAGG 62.966 68.421 31.54 14.70 43.14 4.45
477 478 2.750237 GGGCGCCCCAACAACTAG 60.750 66.667 36.64 0.00 44.65 2.57
493 494 7.923344 CCAACAACTAGTAGATAGAGAATGTGG 59.077 40.741 3.59 0.00 35.30 4.17
499 500 0.946221 GATAGAGAATGTGGCCGCGG 60.946 60.000 24.05 24.05 0.00 6.46
501 502 1.609635 TAGAGAATGTGGCCGCGGAA 61.610 55.000 33.48 14.13 0.00 4.30
511 512 2.038269 GCCGCGGAAAGGTGATCAA 61.038 57.895 33.48 0.00 0.00 2.57
527 528 7.687941 GGTGATCAACCTCTTCTTTTTATCA 57.312 36.000 0.00 0.00 46.55 2.15
534 535 7.442364 TCAACCTCTTCTTTTTATCACTGACAG 59.558 37.037 0.00 0.00 0.00 3.51
538 539 5.997746 TCTTCTTTTTATCACTGACAGTGGG 59.002 40.000 30.39 10.79 45.94 4.61
558 559 0.179056 CCACCACCACCATATCCGTC 60.179 60.000 0.00 0.00 0.00 4.79
629 630 3.963476 TTTGTCCCAGGAGAAAGGAAA 57.037 42.857 4.96 0.00 33.40 3.13
642 643 0.188342 AAGGAAAGGAGGCTGGCAAA 59.812 50.000 3.38 0.00 0.00 3.68
659 660 0.858583 AAACGAAAGCAAAATGGCGC 59.141 45.000 0.00 0.00 39.27 6.53
660 661 1.274798 AACGAAAGCAAAATGGCGCG 61.275 50.000 0.00 0.00 39.27 6.86
661 662 2.771544 GAAAGCAAAATGGCGCGC 59.228 55.556 25.94 25.94 39.27 6.86
662 663 2.021039 GAAAGCAAAATGGCGCGCA 61.021 52.632 34.42 19.50 39.27 6.09
663 664 2.214237 GAAAGCAAAATGGCGCGCAC 62.214 55.000 34.42 22.27 39.27 5.34
664 665 2.697992 AAAGCAAAATGGCGCGCACT 62.698 50.000 34.42 16.75 39.27 4.40
690 691 5.492854 CACGATTAATCCATGTGTCGAAAG 58.507 41.667 9.87 0.00 33.68 2.62
700 701 2.218603 TGTGTCGAAAGAAAAGGAGCC 58.781 47.619 0.00 0.00 45.01 4.70
722 723 1.439644 GTGGCGTGCCTTTCCAAAA 59.560 52.632 12.84 0.00 36.94 2.44
803 810 0.815615 GCTCTCCCGCCAAAATCGAT 60.816 55.000 0.00 0.00 0.00 3.59
831 838 1.350310 AAACCCAGACCCGACAACCT 61.350 55.000 0.00 0.00 0.00 3.50
832 839 1.350310 AACCCAGACCCGACAACCTT 61.350 55.000 0.00 0.00 0.00 3.50
833 840 1.302511 CCCAGACCCGACAACCTTG 60.303 63.158 0.00 0.00 0.00 3.61
834 841 1.302511 CCAGACCCGACAACCTTGG 60.303 63.158 0.00 0.00 0.00 3.61
836 843 2.147387 AGACCCGACAACCTTGGCT 61.147 57.895 0.00 0.00 32.73 4.75
837 844 1.966451 GACCCGACAACCTTGGCTG 60.966 63.158 0.00 0.00 32.73 4.85
838 845 2.391724 GACCCGACAACCTTGGCTGA 62.392 60.000 0.00 0.00 32.73 4.26
839 846 1.966451 CCCGACAACCTTGGCTGAC 60.966 63.158 0.00 0.00 32.73 3.51
840 847 1.966451 CCGACAACCTTGGCTGACC 60.966 63.158 0.00 0.00 32.73 4.02
841 848 1.071471 CGACAACCTTGGCTGACCT 59.929 57.895 0.00 0.00 36.63 3.85
842 849 0.951040 CGACAACCTTGGCTGACCTC 60.951 60.000 0.00 0.00 36.63 3.85
843 850 0.606673 GACAACCTTGGCTGACCTCC 60.607 60.000 0.00 0.00 36.63 4.30
844 851 1.062488 ACAACCTTGGCTGACCTCCT 61.062 55.000 0.00 0.00 36.63 3.69
845 852 0.322008 CAACCTTGGCTGACCTCCTC 60.322 60.000 0.00 0.00 36.63 3.71
846 853 0.474660 AACCTTGGCTGACCTCCTCT 60.475 55.000 0.00 0.00 36.63 3.69
847 854 1.197430 ACCTTGGCTGACCTCCTCTG 61.197 60.000 0.00 0.00 36.63 3.35
848 855 1.078567 CTTGGCTGACCTCCTCTGC 60.079 63.158 0.00 0.00 41.90 4.26
851 858 2.267324 GCTGACCTCCTCTGCCAC 59.733 66.667 0.00 0.00 37.78 5.01
852 859 2.985456 CTGACCTCCTCTGCCACC 59.015 66.667 0.00 0.00 0.00 4.61
853 860 1.915266 CTGACCTCCTCTGCCACCA 60.915 63.158 0.00 0.00 0.00 4.17
854 861 2.177594 CTGACCTCCTCTGCCACCAC 62.178 65.000 0.00 0.00 0.00 4.16
855 862 2.930562 ACCTCCTCTGCCACCACC 60.931 66.667 0.00 0.00 0.00 4.61
856 863 3.721706 CCTCCTCTGCCACCACCC 61.722 72.222 0.00 0.00 0.00 4.61
857 864 4.087892 CTCCTCTGCCACCACCCG 62.088 72.222 0.00 0.00 0.00 5.28
887 894 0.712222 GCTATATAAACCGCGGTCGC 59.288 55.000 34.29 19.98 37.85 5.19
915 935 1.002366 GAGACTGCAGCCAATACGTG 58.998 55.000 15.27 0.00 0.00 4.49
917 937 1.298157 GACTGCAGCCAATACGTGCA 61.298 55.000 15.27 0.00 44.80 4.57
965 989 4.489795 CGTGCGTGCGTGCTCATC 62.490 66.667 1.52 0.00 35.36 2.92
966 990 4.152625 GTGCGTGCGTGCTCATCC 62.153 66.667 1.52 0.00 35.36 3.51
967 991 4.678499 TGCGTGCGTGCTCATCCA 62.678 61.111 1.52 0.00 35.36 3.41
968 992 4.152625 GCGTGCGTGCTCATCCAC 62.153 66.667 0.00 0.00 0.00 4.02
996 1020 0.452184 TGAGATCGCTTCCGTCTGTC 59.548 55.000 0.00 0.00 35.54 3.51
1030 1066 2.445654 GGCTGGAGGAGGAGGAGG 60.446 72.222 0.00 0.00 0.00 4.30
1031 1067 2.693017 GCTGGAGGAGGAGGAGGA 59.307 66.667 0.00 0.00 0.00 3.71
1032 1068 1.457455 GCTGGAGGAGGAGGAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
1033 1069 1.457455 CTGGAGGAGGAGGAGGAGC 60.457 68.421 0.00 0.00 0.00 4.70
1034 1070 2.235602 CTGGAGGAGGAGGAGGAGCA 62.236 65.000 0.00 0.00 0.00 4.26
1035 1071 1.457455 GGAGGAGGAGGAGGAGCAG 60.457 68.421 0.00 0.00 0.00 4.24
1036 1072 1.457455 GAGGAGGAGGAGGAGCAGG 60.457 68.421 0.00 0.00 0.00 4.85
1037 1073 1.938596 AGGAGGAGGAGGAGCAGGA 60.939 63.158 0.00 0.00 0.00 3.86
1038 1074 1.457455 GGAGGAGGAGGAGCAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
1393 1435 3.672397 CAGAGCTTATGGTTGATCGATCG 59.328 47.826 20.03 9.36 0.00 3.69
1394 1436 3.570125 AGAGCTTATGGTTGATCGATCGA 59.430 43.478 21.86 21.86 0.00 3.59
1395 1437 4.219507 AGAGCTTATGGTTGATCGATCGAT 59.780 41.667 29.76 29.76 37.59 3.59
1396 1438 4.240888 AGCTTATGGTTGATCGATCGATG 58.759 43.478 33.86 17.06 34.60 3.84
1463 1506 8.089597 TCTGTTGTAAATATACCGAAGTTCACA 58.910 33.333 3.32 0.00 0.00 3.58
1480 1523 2.159476 TCACATCGTGCTTCTACGTACC 60.159 50.000 0.00 0.00 44.06 3.34
1499 1542 2.094675 CCGCATCCAAGTTCTTCCATT 58.905 47.619 0.00 0.00 0.00 3.16
1500 1543 2.159338 CCGCATCCAAGTTCTTCCATTG 60.159 50.000 0.00 0.00 0.00 2.82
1501 1544 2.733227 CGCATCCAAGTTCTTCCATTGC 60.733 50.000 0.00 0.00 0.00 3.56
1502 1545 2.494870 GCATCCAAGTTCTTCCATTGCT 59.505 45.455 0.00 0.00 0.00 3.91
1503 1546 3.696051 GCATCCAAGTTCTTCCATTGCTA 59.304 43.478 0.00 0.00 0.00 3.49
1504 1547 4.439289 GCATCCAAGTTCTTCCATTGCTAC 60.439 45.833 0.00 0.00 0.00 3.58
1505 1548 3.686016 TCCAAGTTCTTCCATTGCTACC 58.314 45.455 0.00 0.00 0.00 3.18
1506 1549 2.420022 CCAAGTTCTTCCATTGCTACCG 59.580 50.000 0.00 0.00 0.00 4.02
1507 1550 3.074412 CAAGTTCTTCCATTGCTACCGT 58.926 45.455 0.00 0.00 0.00 4.83
1521 1564 4.433615 TGCTACCGTCTTCAGAATTGATC 58.566 43.478 0.00 0.00 32.27 2.92
1522 1565 3.487574 GCTACCGTCTTCAGAATTGATCG 59.512 47.826 0.00 0.00 32.27 3.69
1523 1566 3.868757 ACCGTCTTCAGAATTGATCGA 57.131 42.857 0.00 0.00 32.27 3.59
1524 1567 4.392921 ACCGTCTTCAGAATTGATCGAT 57.607 40.909 0.00 0.00 32.27 3.59
1526 1569 4.806247 ACCGTCTTCAGAATTGATCGATTC 59.194 41.667 23.24 23.24 36.50 2.52
1527 1570 5.046529 CCGTCTTCAGAATTGATCGATTCT 58.953 41.667 26.41 26.41 44.94 2.40
1529 1572 6.409232 CGTCTTCAGAATTGATCGATTCTTG 58.591 40.000 28.61 23.23 42.24 3.02
1538 1582 6.615264 ATTGATCGATTCTTGGTGAGATTG 57.385 37.500 0.00 0.00 33.49 2.67
1543 1587 1.909700 TTCTTGGTGAGATTGGGCAC 58.090 50.000 0.00 0.00 33.49 5.01
1545 1589 0.321564 CTTGGTGAGATTGGGCACGA 60.322 55.000 0.00 0.00 35.91 4.35
1559 1603 1.606606 GCACGAAAATCCGCAGAAAG 58.393 50.000 0.00 0.00 0.00 2.62
1659 1725 2.288030 CCAACGTTGACTCGGAAGTAGT 60.288 50.000 29.35 0.00 35.28 2.73
1664 1730 4.574013 ACGTTGACTCGGAAGTAGTATAGG 59.426 45.833 0.00 0.00 35.28 2.57
1665 1731 4.574013 CGTTGACTCGGAAGTAGTATAGGT 59.426 45.833 0.00 0.00 35.28 3.08
1666 1732 5.277250 CGTTGACTCGGAAGTAGTATAGGTC 60.277 48.000 0.00 0.00 35.28 3.85
1667 1733 4.375272 TGACTCGGAAGTAGTATAGGTCG 58.625 47.826 0.00 0.00 35.28 4.79
1668 1734 3.137533 ACTCGGAAGTAGTATAGGTCGC 58.862 50.000 0.00 0.00 32.59 5.19
1671 1737 2.289002 CGGAAGTAGTATAGGTCGCGTT 59.711 50.000 5.77 0.00 0.00 4.84
1672 1738 3.605692 CGGAAGTAGTATAGGTCGCGTTC 60.606 52.174 5.77 0.09 0.00 3.95
1751 2221 4.012895 CCGTTCTGTGCACGTGGC 62.013 66.667 18.88 10.30 45.13 5.01
1826 2296 1.841944 CGCTGCAGCAATAATTCAACG 59.158 47.619 36.03 13.07 42.21 4.10
1875 2352 8.299570 CCATTTTTCACAGAAAATACAGTAGCT 58.700 33.333 5.83 0.00 37.17 3.32
1876 2353 9.683069 CATTTTTCACAGAAAATACAGTAGCTT 57.317 29.630 5.83 0.00 37.17 3.74
1880 2357 9.730420 TTTCACAGAAAATACAGTAGCTTTTTC 57.270 29.630 9.91 9.91 38.00 2.29
1889 2366 9.673454 AAATACAGTAGCTTTTTCTTTTTACCG 57.327 29.630 0.00 0.00 0.00 4.02
1890 2367 6.930667 ACAGTAGCTTTTTCTTTTTACCGA 57.069 33.333 0.00 0.00 0.00 4.69
2154 2639 4.883354 CCCCAGATTGAGGCGGCC 62.883 72.222 12.11 12.11 0.00 6.13
2171 2656 2.184322 CGGGTCCATCCACTGTCG 59.816 66.667 0.00 0.00 38.11 4.35
2208 2693 1.279527 CGGTGTGTATTGCGTGACGT 61.280 55.000 6.91 0.00 0.00 4.34
2213 2698 2.668945 TGTGTATTGCGTGACGTATTGG 59.331 45.455 6.91 0.00 0.00 3.16
2225 2710 1.278127 ACGTATTGGGTGAACCTGGAG 59.722 52.381 0.00 0.00 41.11 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.142182 CCGTCAATTCATTTATGGCAGGTT 60.142 41.667 0.00 0.00 0.00 3.50
2 3 3.381272 ACCGTCAATTCATTTATGGCAGG 59.619 43.478 0.00 0.00 0.00 4.85
3 4 4.353737 CACCGTCAATTCATTTATGGCAG 58.646 43.478 0.00 0.00 0.00 4.85
4 5 3.428725 GCACCGTCAATTCATTTATGGCA 60.429 43.478 0.00 0.00 0.00 4.92
5 6 3.115554 GCACCGTCAATTCATTTATGGC 58.884 45.455 0.00 0.00 0.00 4.40
6 7 3.362295 CGCACCGTCAATTCATTTATGG 58.638 45.455 0.00 0.00 0.00 2.74
7 8 2.783284 GCGCACCGTCAATTCATTTATG 59.217 45.455 0.30 0.00 0.00 1.90
8 9 2.682856 AGCGCACCGTCAATTCATTTAT 59.317 40.909 11.47 0.00 0.00 1.40
9 10 2.080693 AGCGCACCGTCAATTCATTTA 58.919 42.857 11.47 0.00 0.00 1.40
10 11 0.881118 AGCGCACCGTCAATTCATTT 59.119 45.000 11.47 0.00 0.00 2.32
11 12 0.447801 GAGCGCACCGTCAATTCATT 59.552 50.000 11.47 0.00 0.00 2.57
12 13 1.369091 GGAGCGCACCGTCAATTCAT 61.369 55.000 11.47 0.00 0.00 2.57
13 14 2.032634 GGAGCGCACCGTCAATTCA 61.033 57.895 11.47 0.00 0.00 2.57
14 15 1.696832 GAGGAGCGCACCGTCAATTC 61.697 60.000 18.47 5.52 34.73 2.17
15 16 1.741770 GAGGAGCGCACCGTCAATT 60.742 57.895 18.47 0.00 34.73 2.32
16 17 2.125512 GAGGAGCGCACCGTCAAT 60.126 61.111 18.47 0.00 34.73 2.57
17 18 2.867855 AAGAGGAGCGCACCGTCAA 61.868 57.895 18.47 0.00 34.73 3.18
18 19 3.303135 AAGAGGAGCGCACCGTCA 61.303 61.111 18.47 0.00 34.73 4.35
19 20 2.811317 CAAGAGGAGCGCACCGTC 60.811 66.667 18.47 15.19 34.73 4.79
21 22 4.749310 AGCAAGAGGAGCGCACCG 62.749 66.667 18.47 5.17 37.01 4.94
22 23 2.817396 GAGCAAGAGGAGCGCACC 60.817 66.667 16.88 16.88 37.01 5.01
23 24 3.184683 CGAGCAAGAGGAGCGCAC 61.185 66.667 11.47 1.97 37.01 5.34
24 25 3.226429 AACGAGCAAGAGGAGCGCA 62.226 57.895 11.47 0.00 37.01 6.09
25 26 2.433318 AACGAGCAAGAGGAGCGC 60.433 61.111 0.00 0.00 37.01 5.92
26 27 2.734673 GCAACGAGCAAGAGGAGCG 61.735 63.158 0.00 0.00 44.79 5.03
27 28 3.172919 GCAACGAGCAAGAGGAGC 58.827 61.111 0.00 0.00 44.79 4.70
36 37 2.873133 AGACATACCTAGCAACGAGC 57.127 50.000 0.00 0.00 46.19 5.03
37 38 6.638873 CAGAATTAGACATACCTAGCAACGAG 59.361 42.308 0.00 0.00 0.00 4.18
38 39 6.461092 CCAGAATTAGACATACCTAGCAACGA 60.461 42.308 0.00 0.00 0.00 3.85
39 40 5.692204 CCAGAATTAGACATACCTAGCAACG 59.308 44.000 0.00 0.00 0.00 4.10
40 41 6.817184 TCCAGAATTAGACATACCTAGCAAC 58.183 40.000 0.00 0.00 0.00 4.17
41 42 6.611642 ACTCCAGAATTAGACATACCTAGCAA 59.388 38.462 0.00 0.00 0.00 3.91
42 43 6.136857 ACTCCAGAATTAGACATACCTAGCA 58.863 40.000 0.00 0.00 0.00 3.49
43 44 6.658188 ACTCCAGAATTAGACATACCTAGC 57.342 41.667 0.00 0.00 0.00 3.42
44 45 9.968870 GTTAACTCCAGAATTAGACATACCTAG 57.031 37.037 0.00 0.00 0.00 3.02
45 46 9.483489 TGTTAACTCCAGAATTAGACATACCTA 57.517 33.333 7.22 0.00 0.00 3.08
46 47 8.375493 TGTTAACTCCAGAATTAGACATACCT 57.625 34.615 7.22 0.00 0.00 3.08
47 48 9.444600 TTTGTTAACTCCAGAATTAGACATACC 57.555 33.333 7.22 0.00 0.00 2.73
50 51 9.739276 TGATTTGTTAACTCCAGAATTAGACAT 57.261 29.630 7.22 0.00 0.00 3.06
51 52 9.219603 CTGATTTGTTAACTCCAGAATTAGACA 57.780 33.333 7.22 0.00 0.00 3.41
52 53 8.178313 GCTGATTTGTTAACTCCAGAATTAGAC 58.822 37.037 7.22 0.94 0.00 2.59
53 54 8.103305 AGCTGATTTGTTAACTCCAGAATTAGA 58.897 33.333 7.22 0.00 0.00 2.10
54 55 8.273780 AGCTGATTTGTTAACTCCAGAATTAG 57.726 34.615 7.22 6.83 0.00 1.73
55 56 8.514594 CAAGCTGATTTGTTAACTCCAGAATTA 58.485 33.333 7.22 0.00 0.00 1.40
56 57 7.231317 TCAAGCTGATTTGTTAACTCCAGAATT 59.769 33.333 7.22 5.19 0.00 2.17
57 58 6.716628 TCAAGCTGATTTGTTAACTCCAGAAT 59.283 34.615 7.22 0.18 0.00 2.40
58 59 6.061441 TCAAGCTGATTTGTTAACTCCAGAA 58.939 36.000 7.22 0.00 0.00 3.02
59 60 5.620206 TCAAGCTGATTTGTTAACTCCAGA 58.380 37.500 7.22 0.00 0.00 3.86
60 61 5.947228 TCAAGCTGATTTGTTAACTCCAG 57.053 39.130 7.22 9.32 0.00 3.86
61 62 5.769662 ACATCAAGCTGATTTGTTAACTCCA 59.230 36.000 7.22 0.00 34.28 3.86
62 63 6.072508 TGACATCAAGCTGATTTGTTAACTCC 60.073 38.462 7.22 0.00 34.28 3.85
63 64 6.902341 TGACATCAAGCTGATTTGTTAACTC 58.098 36.000 7.22 0.00 34.28 3.01
64 65 6.882610 TGACATCAAGCTGATTTGTTAACT 57.117 33.333 7.22 0.00 34.28 2.24
65 66 7.307694 TCATGACATCAAGCTGATTTGTTAAC 58.692 34.615 0.00 0.00 34.28 2.01
66 67 7.451501 TCATGACATCAAGCTGATTTGTTAA 57.548 32.000 0.00 0.00 34.28 2.01
67 68 7.634671 ATCATGACATCAAGCTGATTTGTTA 57.365 32.000 0.00 0.00 34.28 2.41
68 69 5.970317 TCATGACATCAAGCTGATTTGTT 57.030 34.783 0.00 0.00 34.28 2.83
69 70 7.634671 TTATCATGACATCAAGCTGATTTGT 57.365 32.000 0.00 0.00 34.28 2.83
70 71 8.135529 ACATTATCATGACATCAAGCTGATTTG 58.864 33.333 0.00 4.47 32.74 2.32
71 72 8.234136 ACATTATCATGACATCAAGCTGATTT 57.766 30.769 0.00 0.00 32.74 2.17
72 73 7.818997 ACATTATCATGACATCAAGCTGATT 57.181 32.000 0.00 0.00 32.74 2.57
73 74 8.947115 CATACATTATCATGACATCAAGCTGAT 58.053 33.333 0.00 2.85 34.19 2.90
74 75 7.935210 ACATACATTATCATGACATCAAGCTGA 59.065 33.333 0.00 0.00 34.11 4.26
75 76 8.095937 ACATACATTATCATGACATCAAGCTG 57.904 34.615 0.00 0.00 34.11 4.24
76 77 8.687292 AACATACATTATCATGACATCAAGCT 57.313 30.769 0.00 0.00 34.11 3.74
77 78 9.177304 CAAACATACATTATCATGACATCAAGC 57.823 33.333 0.00 0.00 34.11 4.01
78 79 9.177304 GCAAACATACATTATCATGACATCAAG 57.823 33.333 0.00 0.00 34.11 3.02
79 80 8.905850 AGCAAACATACATTATCATGACATCAA 58.094 29.630 0.00 0.00 34.11 2.57
80 81 8.454570 AGCAAACATACATTATCATGACATCA 57.545 30.769 0.00 0.00 34.11 3.07
81 82 9.740239 AAAGCAAACATACATTATCATGACATC 57.260 29.630 0.00 0.00 34.11 3.06
83 84 9.571810 GAAAAGCAAACATACATTATCATGACA 57.428 29.630 0.00 0.00 34.11 3.58
84 85 9.793252 AGAAAAGCAAACATACATTATCATGAC 57.207 29.630 0.00 0.00 34.11 3.06
88 89 9.409312 CACAAGAAAAGCAAACATACATTATCA 57.591 29.630 0.00 0.00 0.00 2.15
89 90 9.410556 ACACAAGAAAAGCAAACATACATTATC 57.589 29.630 0.00 0.00 0.00 1.75
90 91 9.762933 AACACAAGAAAAGCAAACATACATTAT 57.237 25.926 0.00 0.00 0.00 1.28
91 92 9.243637 GAACACAAGAAAAGCAAACATACATTA 57.756 29.630 0.00 0.00 0.00 1.90
92 93 7.763528 TGAACACAAGAAAAGCAAACATACATT 59.236 29.630 0.00 0.00 0.00 2.71
93 94 7.264221 TGAACACAAGAAAAGCAAACATACAT 58.736 30.769 0.00 0.00 0.00 2.29
94 95 6.625362 TGAACACAAGAAAAGCAAACATACA 58.375 32.000 0.00 0.00 0.00 2.29
95 96 6.198966 CCTGAACACAAGAAAAGCAAACATAC 59.801 38.462 0.00 0.00 0.00 2.39
96 97 6.096141 TCCTGAACACAAGAAAAGCAAACATA 59.904 34.615 0.00 0.00 0.00 2.29
97 98 5.105392 TCCTGAACACAAGAAAAGCAAACAT 60.105 36.000 0.00 0.00 0.00 2.71
98 99 4.219507 TCCTGAACACAAGAAAAGCAAACA 59.780 37.500 0.00 0.00 0.00 2.83
99 100 4.743493 TCCTGAACACAAGAAAAGCAAAC 58.257 39.130 0.00 0.00 0.00 2.93
100 101 5.398603 TTCCTGAACACAAGAAAAGCAAA 57.601 34.783 0.00 0.00 0.00 3.68
101 102 5.047377 ACTTTCCTGAACACAAGAAAAGCAA 60.047 36.000 0.00 0.00 0.00 3.91
102 103 4.462483 ACTTTCCTGAACACAAGAAAAGCA 59.538 37.500 0.00 0.00 0.00 3.91
103 104 4.800471 CACTTTCCTGAACACAAGAAAAGC 59.200 41.667 0.00 0.00 0.00 3.51
104 105 5.343249 CCACTTTCCTGAACACAAGAAAAG 58.657 41.667 0.00 0.00 0.00 2.27
105 106 4.381505 GCCACTTTCCTGAACACAAGAAAA 60.382 41.667 0.00 0.00 0.00 2.29
106 107 3.130340 GCCACTTTCCTGAACACAAGAAA 59.870 43.478 0.00 0.00 0.00 2.52
107 108 2.687935 GCCACTTTCCTGAACACAAGAA 59.312 45.455 0.00 0.00 0.00 2.52
108 109 2.092429 AGCCACTTTCCTGAACACAAGA 60.092 45.455 0.00 0.00 0.00 3.02
109 110 2.301346 AGCCACTTTCCTGAACACAAG 58.699 47.619 0.00 0.00 0.00 3.16
110 111 2.426738 CAAGCCACTTTCCTGAACACAA 59.573 45.455 0.00 0.00 0.00 3.33
111 112 2.023673 CAAGCCACTTTCCTGAACACA 58.976 47.619 0.00 0.00 0.00 3.72
112 113 1.338020 CCAAGCCACTTTCCTGAACAC 59.662 52.381 0.00 0.00 0.00 3.32
113 114 1.691196 CCAAGCCACTTTCCTGAACA 58.309 50.000 0.00 0.00 0.00 3.18
114 115 0.315251 GCCAAGCCACTTTCCTGAAC 59.685 55.000 0.00 0.00 0.00 3.18
115 116 2.732289 GCCAAGCCACTTTCCTGAA 58.268 52.632 0.00 0.00 0.00 3.02
116 117 4.500265 GCCAAGCCACTTTCCTGA 57.500 55.556 0.00 0.00 0.00 3.86
132 133 1.135939 GTACGAATTTGGCGGTGGC 59.864 57.895 0.00 0.00 38.90 5.01
133 134 1.650314 GGGTACGAATTTGGCGGTGG 61.650 60.000 0.00 0.00 0.00 4.61
134 135 0.675522 AGGGTACGAATTTGGCGGTG 60.676 55.000 0.00 0.00 0.00 4.94
135 136 0.675522 CAGGGTACGAATTTGGCGGT 60.676 55.000 0.00 0.00 0.00 5.68
136 137 0.391927 TCAGGGTACGAATTTGGCGG 60.392 55.000 0.00 0.00 0.00 6.13
137 138 1.006832 CTCAGGGTACGAATTTGGCG 58.993 55.000 0.00 0.00 0.00 5.69
138 139 2.109425 ACTCAGGGTACGAATTTGGC 57.891 50.000 0.00 0.00 0.00 4.52
139 140 5.447624 AAAAACTCAGGGTACGAATTTGG 57.552 39.130 0.00 0.00 0.00 3.28
140 141 6.206048 ACCTAAAAACTCAGGGTACGAATTTG 59.794 38.462 0.00 0.00 36.15 2.32
141 142 6.301486 ACCTAAAAACTCAGGGTACGAATTT 58.699 36.000 0.00 0.00 36.15 1.82
142 143 5.872963 ACCTAAAAACTCAGGGTACGAATT 58.127 37.500 0.00 0.00 36.15 2.17
143 144 5.494390 ACCTAAAAACTCAGGGTACGAAT 57.506 39.130 0.00 0.00 36.15 3.34
144 145 4.961438 ACCTAAAAACTCAGGGTACGAA 57.039 40.909 0.00 0.00 36.15 3.85
145 146 4.961438 AACCTAAAAACTCAGGGTACGA 57.039 40.909 0.00 0.00 36.15 3.43
148 149 5.608015 ACTGGTAACCTAAAAACTCAGGGTA 59.392 40.000 0.00 0.00 36.15 3.69
149 150 4.414514 ACTGGTAACCTAAAAACTCAGGGT 59.585 41.667 0.00 0.00 36.15 4.34
150 151 4.981812 ACTGGTAACCTAAAAACTCAGGG 58.018 43.478 0.00 0.00 36.15 4.45
151 152 6.017357 GTCAACTGGTAACCTAAAAACTCAGG 60.017 42.308 0.00 0.00 37.97 3.86
152 153 6.766467 AGTCAACTGGTAACCTAAAAACTCAG 59.234 38.462 0.00 0.00 0.00 3.35
153 154 6.540914 CAGTCAACTGGTAACCTAAAAACTCA 59.459 38.462 2.08 0.00 40.20 3.41
154 155 6.764560 TCAGTCAACTGGTAACCTAAAAACTC 59.235 38.462 10.13 0.00 43.91 3.01
155 156 6.655930 TCAGTCAACTGGTAACCTAAAAACT 58.344 36.000 10.13 0.00 43.91 2.66
156 157 6.930667 TCAGTCAACTGGTAACCTAAAAAC 57.069 37.500 10.13 0.00 43.91 2.43
157 158 7.514721 AGATCAGTCAACTGGTAACCTAAAAA 58.485 34.615 10.13 0.00 43.91 1.94
158 159 7.074653 AGATCAGTCAACTGGTAACCTAAAA 57.925 36.000 10.13 0.00 43.91 1.52
159 160 6.681729 AGATCAGTCAACTGGTAACCTAAA 57.318 37.500 10.13 0.00 43.91 1.85
160 161 6.681729 AAGATCAGTCAACTGGTAACCTAA 57.318 37.500 10.13 0.00 43.91 2.69
161 162 7.786046 TTAAGATCAGTCAACTGGTAACCTA 57.214 36.000 10.13 0.00 43.91 3.08
162 163 6.681729 TTAAGATCAGTCAACTGGTAACCT 57.318 37.500 10.13 0.00 43.91 3.50
163 164 6.879458 ACATTAAGATCAGTCAACTGGTAACC 59.121 38.462 10.13 0.00 43.91 2.85
164 165 7.602644 TCACATTAAGATCAGTCAACTGGTAAC 59.397 37.037 10.13 0.00 43.91 2.50
165 166 7.676004 TCACATTAAGATCAGTCAACTGGTAA 58.324 34.615 10.13 5.10 43.91 2.85
166 167 7.039011 ACTCACATTAAGATCAGTCAACTGGTA 60.039 37.037 10.13 0.00 43.91 3.25
167 168 6.114187 TCACATTAAGATCAGTCAACTGGT 57.886 37.500 10.13 2.70 43.91 4.00
168 169 6.091849 CACTCACATTAAGATCAGTCAACTGG 59.908 42.308 10.13 0.00 43.91 4.00
169 170 6.401903 GCACTCACATTAAGATCAGTCAACTG 60.402 42.308 3.69 3.69 45.08 3.16
170 171 5.641209 GCACTCACATTAAGATCAGTCAACT 59.359 40.000 0.00 0.00 0.00 3.16
171 172 5.641209 AGCACTCACATTAAGATCAGTCAAC 59.359 40.000 0.00 0.00 0.00 3.18
172 173 5.798132 AGCACTCACATTAAGATCAGTCAA 58.202 37.500 0.00 0.00 0.00 3.18
173 174 5.411831 AGCACTCACATTAAGATCAGTCA 57.588 39.130 0.00 0.00 0.00 3.41
174 175 7.432869 AGATAGCACTCACATTAAGATCAGTC 58.567 38.462 0.00 0.00 0.00 3.51
175 176 7.358770 AGATAGCACTCACATTAAGATCAGT 57.641 36.000 0.00 0.00 0.00 3.41
176 177 9.409312 CTAAGATAGCACTCACATTAAGATCAG 57.591 37.037 0.00 0.00 0.00 2.90
177 178 8.918116 ACTAAGATAGCACTCACATTAAGATCA 58.082 33.333 0.00 0.00 0.00 2.92
178 179 9.757227 AACTAAGATAGCACTCACATTAAGATC 57.243 33.333 0.00 0.00 0.00 2.75
217 218 8.708378 AGAAAGTGTCATTCATGTATATCAGGA 58.292 33.333 0.00 0.00 34.96 3.86
218 219 8.899427 AGAAAGTGTCATTCATGTATATCAGG 57.101 34.615 0.00 0.00 0.00 3.86
224 225 9.725019 TCAAACTAGAAAGTGTCATTCATGTAT 57.275 29.630 0.00 0.00 35.62 2.29
225 226 8.988934 GTCAAACTAGAAAGTGTCATTCATGTA 58.011 33.333 0.00 0.00 35.62 2.29
226 227 7.498900 TGTCAAACTAGAAAGTGTCATTCATGT 59.501 33.333 0.00 0.00 35.62 3.21
227 228 7.864686 TGTCAAACTAGAAAGTGTCATTCATG 58.135 34.615 0.00 0.00 35.62 3.07
228 229 8.450578 TTGTCAAACTAGAAAGTGTCATTCAT 57.549 30.769 0.00 0.00 35.62 2.57
229 230 7.857734 TTGTCAAACTAGAAAGTGTCATTCA 57.142 32.000 0.00 0.00 35.62 2.57
230 231 8.559536 TCATTGTCAAACTAGAAAGTGTCATTC 58.440 33.333 0.00 0.00 35.62 2.67
231 232 8.450578 TCATTGTCAAACTAGAAAGTGTCATT 57.549 30.769 0.00 0.00 35.62 2.57
232 233 8.450578 TTCATTGTCAAACTAGAAAGTGTCAT 57.549 30.769 0.00 0.00 35.62 3.06
233 234 7.857734 TTCATTGTCAAACTAGAAAGTGTCA 57.142 32.000 0.00 0.00 35.62 3.58
242 243 9.345517 CCAACACATTATTCATTGTCAAACTAG 57.654 33.333 0.00 0.00 0.00 2.57
243 244 8.855110 ACCAACACATTATTCATTGTCAAACTA 58.145 29.630 0.00 0.00 0.00 2.24
244 245 7.725251 ACCAACACATTATTCATTGTCAAACT 58.275 30.769 0.00 0.00 0.00 2.66
245 246 7.867403 AGACCAACACATTATTCATTGTCAAAC 59.133 33.333 0.00 0.00 0.00 2.93
246 247 7.950512 AGACCAACACATTATTCATTGTCAAA 58.049 30.769 0.00 0.00 0.00 2.69
247 248 7.448161 AGAGACCAACACATTATTCATTGTCAA 59.552 33.333 0.00 0.00 0.00 3.18
248 249 6.942005 AGAGACCAACACATTATTCATTGTCA 59.058 34.615 0.00 0.00 0.00 3.58
249 250 7.383102 AGAGACCAACACATTATTCATTGTC 57.617 36.000 0.00 0.00 0.00 3.18
250 251 7.448161 TCAAGAGACCAACACATTATTCATTGT 59.552 33.333 0.00 0.00 0.00 2.71
251 252 7.819644 TCAAGAGACCAACACATTATTCATTG 58.180 34.615 0.00 0.00 0.00 2.82
252 253 8.585471 ATCAAGAGACCAACACATTATTCATT 57.415 30.769 0.00 0.00 0.00 2.57
253 254 9.685276 TTATCAAGAGACCAACACATTATTCAT 57.315 29.630 0.00 0.00 0.00 2.57
254 255 9.166173 CTTATCAAGAGACCAACACATTATTCA 57.834 33.333 0.00 0.00 0.00 2.57
255 256 9.383519 TCTTATCAAGAGACCAACACATTATTC 57.616 33.333 0.00 0.00 32.71 1.75
271 272 6.330278 CACGTTCATACACCTCTTATCAAGA 58.670 40.000 0.00 0.00 35.87 3.02
272 273 5.520288 CCACGTTCATACACCTCTTATCAAG 59.480 44.000 0.00 0.00 0.00 3.02
273 274 5.046878 ACCACGTTCATACACCTCTTATCAA 60.047 40.000 0.00 0.00 0.00 2.57
274 275 4.464951 ACCACGTTCATACACCTCTTATCA 59.535 41.667 0.00 0.00 0.00 2.15
275 276 5.007385 ACCACGTTCATACACCTCTTATC 57.993 43.478 0.00 0.00 0.00 1.75
276 277 5.416271 AACCACGTTCATACACCTCTTAT 57.584 39.130 0.00 0.00 0.00 1.73
277 278 4.877378 AACCACGTTCATACACCTCTTA 57.123 40.909 0.00 0.00 0.00 2.10
278 279 3.764237 AACCACGTTCATACACCTCTT 57.236 42.857 0.00 0.00 0.00 2.85
279 280 3.764237 AAACCACGTTCATACACCTCT 57.236 42.857 0.00 0.00 0.00 3.69
280 281 5.927954 TTTAAACCACGTTCATACACCTC 57.072 39.130 0.00 0.00 0.00 3.85
281 282 6.696441 TTTTTAAACCACGTTCATACACCT 57.304 33.333 0.00 0.00 0.00 4.00
313 314 8.711457 GCAAACAATAGCACTAATCAAACATTT 58.289 29.630 0.00 0.00 0.00 2.32
314 315 7.871973 TGCAAACAATAGCACTAATCAAACATT 59.128 29.630 0.00 0.00 35.51 2.71
315 316 7.377398 TGCAAACAATAGCACTAATCAAACAT 58.623 30.769 0.00 0.00 35.51 2.71
316 317 6.743110 TGCAAACAATAGCACTAATCAAACA 58.257 32.000 0.00 0.00 35.51 2.83
317 318 6.183360 GCTGCAAACAATAGCACTAATCAAAC 60.183 38.462 0.00 0.00 37.40 2.93
318 319 5.863397 GCTGCAAACAATAGCACTAATCAAA 59.137 36.000 0.00 0.00 37.40 2.69
319 320 5.183713 AGCTGCAAACAATAGCACTAATCAA 59.816 36.000 1.02 0.00 39.84 2.57
320 321 4.701651 AGCTGCAAACAATAGCACTAATCA 59.298 37.500 1.02 0.00 39.84 2.57
321 322 5.240713 AGCTGCAAACAATAGCACTAATC 57.759 39.130 1.02 0.00 39.84 1.75
322 323 6.293081 CGATAGCTGCAAACAATAGCACTAAT 60.293 38.462 1.02 0.00 39.84 1.73
323 324 5.006649 CGATAGCTGCAAACAATAGCACTAA 59.993 40.000 1.02 0.00 39.84 2.24
324 325 4.507756 CGATAGCTGCAAACAATAGCACTA 59.492 41.667 1.02 0.00 39.84 2.74
325 326 3.310774 CGATAGCTGCAAACAATAGCACT 59.689 43.478 1.02 0.00 39.84 4.40
326 327 3.309682 TCGATAGCTGCAAACAATAGCAC 59.690 43.478 1.02 0.00 39.84 4.40
327 328 3.530535 TCGATAGCTGCAAACAATAGCA 58.469 40.909 1.02 0.00 39.84 3.49
328 329 4.739046 ATCGATAGCTGCAAACAATAGC 57.261 40.909 1.02 0.00 37.71 2.97
329 330 7.855545 ACTTTATCGATAGCTGCAAACAATAG 58.144 34.615 5.09 0.00 0.00 1.73
330 331 7.786178 ACTTTATCGATAGCTGCAAACAATA 57.214 32.000 5.09 0.00 0.00 1.90
331 332 6.683974 ACTTTATCGATAGCTGCAAACAAT 57.316 33.333 5.09 0.00 0.00 2.71
332 333 6.072728 ACAACTTTATCGATAGCTGCAAACAA 60.073 34.615 5.09 0.00 0.00 2.83
333 334 5.411361 ACAACTTTATCGATAGCTGCAAACA 59.589 36.000 5.09 0.00 0.00 2.83
334 335 5.734498 CACAACTTTATCGATAGCTGCAAAC 59.266 40.000 5.09 0.00 0.00 2.93
335 336 5.641636 TCACAACTTTATCGATAGCTGCAAA 59.358 36.000 5.09 0.00 0.00 3.68
336 337 5.175127 TCACAACTTTATCGATAGCTGCAA 58.825 37.500 5.09 0.00 0.00 4.08
337 338 4.754322 TCACAACTTTATCGATAGCTGCA 58.246 39.130 5.09 0.00 0.00 4.41
338 339 5.914085 ATCACAACTTTATCGATAGCTGC 57.086 39.130 5.09 0.00 0.00 5.25
353 354 9.864034 CGACAATGGTTAAAGATATATCACAAC 57.136 33.333 15.08 13.42 0.00 3.32
354 355 8.556194 GCGACAATGGTTAAAGATATATCACAA 58.444 33.333 15.08 3.02 0.00 3.33
355 356 7.931407 AGCGACAATGGTTAAAGATATATCACA 59.069 33.333 15.08 4.55 0.00 3.58
356 357 8.311650 AGCGACAATGGTTAAAGATATATCAC 57.688 34.615 15.08 4.17 0.00 3.06
357 358 8.773645 CAAGCGACAATGGTTAAAGATATATCA 58.226 33.333 15.08 0.00 0.00 2.15
358 359 8.774586 ACAAGCGACAATGGTTAAAGATATATC 58.225 33.333 4.42 4.42 0.00 1.63
359 360 8.677148 ACAAGCGACAATGGTTAAAGATATAT 57.323 30.769 0.00 0.00 0.00 0.86
360 361 7.985184 AGACAAGCGACAATGGTTAAAGATATA 59.015 33.333 0.00 0.00 0.00 0.86
361 362 6.823689 AGACAAGCGACAATGGTTAAAGATAT 59.176 34.615 0.00 0.00 0.00 1.63
362 363 6.170506 AGACAAGCGACAATGGTTAAAGATA 58.829 36.000 0.00 0.00 0.00 1.98
363 364 5.003804 AGACAAGCGACAATGGTTAAAGAT 58.996 37.500 0.00 0.00 0.00 2.40
364 365 4.385825 AGACAAGCGACAATGGTTAAAGA 58.614 39.130 0.00 0.00 0.00 2.52
365 366 4.749245 AGACAAGCGACAATGGTTAAAG 57.251 40.909 0.00 0.00 0.00 1.85
366 367 5.049954 GTGTAGACAAGCGACAATGGTTAAA 60.050 40.000 0.00 0.00 33.81 1.52
367 368 4.449743 GTGTAGACAAGCGACAATGGTTAA 59.550 41.667 0.00 0.00 33.81 2.01
368 369 3.991773 GTGTAGACAAGCGACAATGGTTA 59.008 43.478 0.00 0.00 33.81 2.85
369 370 2.806244 GTGTAGACAAGCGACAATGGTT 59.194 45.455 0.00 0.00 33.81 3.67
370 371 2.037251 AGTGTAGACAAGCGACAATGGT 59.963 45.455 0.00 0.00 33.81 3.55
371 372 2.413112 CAGTGTAGACAAGCGACAATGG 59.587 50.000 0.00 0.00 42.11 3.16
372 373 3.712162 CAGTGTAGACAAGCGACAATG 57.288 47.619 0.00 0.00 40.66 2.82
373 374 3.243737 TGACAGTGTAGACAAGCGACAAT 60.244 43.478 0.00 0.00 33.81 2.71
374 375 2.100087 TGACAGTGTAGACAAGCGACAA 59.900 45.455 0.00 0.00 33.81 3.18
375 376 1.679153 TGACAGTGTAGACAAGCGACA 59.321 47.619 0.00 0.00 0.00 4.35
376 377 2.320367 CTGACAGTGTAGACAAGCGAC 58.680 52.381 0.00 0.00 0.00 5.19
377 378 1.335964 GCTGACAGTGTAGACAAGCGA 60.336 52.381 3.99 0.00 0.00 4.93
378 379 1.063806 GCTGACAGTGTAGACAAGCG 58.936 55.000 3.99 0.00 0.00 4.68
379 380 1.063806 CGCTGACAGTGTAGACAAGC 58.936 55.000 7.89 0.14 0.00 4.01
380 381 1.063806 GCGCTGACAGTGTAGACAAG 58.936 55.000 17.01 0.00 0.00 3.16
381 382 0.663269 CGCGCTGACAGTGTAGACAA 60.663 55.000 17.01 0.00 0.00 3.18
382 383 1.081442 CGCGCTGACAGTGTAGACA 60.081 57.895 17.01 0.00 0.00 3.41
383 384 0.663568 AACGCGCTGACAGTGTAGAC 60.664 55.000 17.01 0.01 0.00 2.59
384 385 0.876399 TAACGCGCTGACAGTGTAGA 59.124 50.000 17.01 0.00 0.00 2.59
385 386 1.385743 GTTAACGCGCTGACAGTGTAG 59.614 52.381 17.01 13.44 0.00 2.74
386 387 1.269154 TGTTAACGCGCTGACAGTGTA 60.269 47.619 17.01 0.00 0.00 2.90
387 388 0.528901 TGTTAACGCGCTGACAGTGT 60.529 50.000 17.01 0.00 0.00 3.55
388 389 0.579630 TTGTTAACGCGCTGACAGTG 59.420 50.000 5.73 11.79 0.00 3.66
389 390 0.580104 GTTGTTAACGCGCTGACAGT 59.420 50.000 5.73 0.00 0.00 3.55
390 391 0.859232 AGTTGTTAACGCGCTGACAG 59.141 50.000 5.73 0.00 36.23 3.51
391 392 2.137129 TAGTTGTTAACGCGCTGACA 57.863 45.000 5.73 3.97 36.23 3.58
392 393 2.222729 CCATAGTTGTTAACGCGCTGAC 60.223 50.000 5.73 0.38 36.23 3.51
393 394 1.996898 CCATAGTTGTTAACGCGCTGA 59.003 47.619 5.73 0.00 36.23 4.26
394 395 1.996898 TCCATAGTTGTTAACGCGCTG 59.003 47.619 5.73 1.02 36.23 5.18
395 396 2.373540 TCCATAGTTGTTAACGCGCT 57.626 45.000 5.73 0.00 36.23 5.92
396 397 2.786700 GCTTCCATAGTTGTTAACGCGC 60.787 50.000 5.73 0.00 36.23 6.86
397 398 2.671396 AGCTTCCATAGTTGTTAACGCG 59.329 45.455 3.53 3.53 36.23 6.01
398 399 4.153475 TCAAGCTTCCATAGTTGTTAACGC 59.847 41.667 0.00 0.00 36.23 4.84
399 400 5.856126 TCAAGCTTCCATAGTTGTTAACG 57.144 39.130 0.00 0.00 36.23 3.18
400 401 8.947115 ACTAATCAAGCTTCCATAGTTGTTAAC 58.053 33.333 0.00 0.00 0.00 2.01
401 402 8.946085 CACTAATCAAGCTTCCATAGTTGTTAA 58.054 33.333 0.00 0.00 0.00 2.01
402 403 7.065803 GCACTAATCAAGCTTCCATAGTTGTTA 59.934 37.037 0.00 0.00 0.00 2.41
403 404 6.127897 GCACTAATCAAGCTTCCATAGTTGTT 60.128 38.462 0.00 0.00 0.00 2.83
404 405 5.355350 GCACTAATCAAGCTTCCATAGTTGT 59.645 40.000 0.00 0.00 0.00 3.32
405 406 5.503031 CGCACTAATCAAGCTTCCATAGTTG 60.503 44.000 0.00 2.52 0.00 3.16
406 407 4.572389 CGCACTAATCAAGCTTCCATAGTT 59.428 41.667 0.00 0.00 0.00 2.24
407 408 4.122776 CGCACTAATCAAGCTTCCATAGT 58.877 43.478 0.00 2.33 0.00 2.12
408 409 3.059325 GCGCACTAATCAAGCTTCCATAG 60.059 47.826 0.30 1.66 0.00 2.23
409 410 2.872245 GCGCACTAATCAAGCTTCCATA 59.128 45.455 0.30 0.00 0.00 2.74
410 411 1.672881 GCGCACTAATCAAGCTTCCAT 59.327 47.619 0.30 0.00 0.00 3.41
411 412 1.086696 GCGCACTAATCAAGCTTCCA 58.913 50.000 0.30 0.00 0.00 3.53
412 413 1.328986 GAGCGCACTAATCAAGCTTCC 59.671 52.381 11.47 0.00 38.39 3.46
413 414 2.002586 TGAGCGCACTAATCAAGCTTC 58.997 47.619 11.47 0.00 38.39 3.86
414 415 2.099141 TGAGCGCACTAATCAAGCTT 57.901 45.000 11.47 0.00 38.39 3.74
415 416 2.099141 TTGAGCGCACTAATCAAGCT 57.901 45.000 11.47 0.00 41.29 3.74
416 417 4.274865 GTTATTGAGCGCACTAATCAAGC 58.725 43.478 11.47 1.78 36.47 4.01
417 418 4.508971 CGTTATTGAGCGCACTAATCAAG 58.491 43.478 11.47 0.00 36.47 3.02
418 419 4.514545 CGTTATTGAGCGCACTAATCAA 57.485 40.909 11.47 11.12 37.36 2.57
428 429 1.590238 CTCTTGAGGCGTTATTGAGCG 59.410 52.381 0.00 0.00 0.00 5.03
429 430 1.936547 CCTCTTGAGGCGTTATTGAGC 59.063 52.381 3.51 0.00 0.00 4.26
430 431 1.936547 GCCTCTTGAGGCGTTATTGAG 59.063 52.381 23.58 0.00 45.79 3.02
431 432 2.024176 GCCTCTTGAGGCGTTATTGA 57.976 50.000 23.58 0.00 45.79 2.57
440 441 3.965539 CTGGTGGCGCCTCTTGAGG 62.966 68.421 29.70 12.07 38.35 3.86
441 442 2.435586 CTGGTGGCGCCTCTTGAG 60.436 66.667 29.70 16.64 38.35 3.02
442 443 4.020617 CCTGGTGGCGCCTCTTGA 62.021 66.667 29.70 2.88 38.35 3.02
460 461 2.187896 TACTAGTTGTTGGGGCGCCC 62.188 60.000 38.57 38.57 45.71 6.13
461 462 0.743345 CTACTAGTTGTTGGGGCGCC 60.743 60.000 21.18 21.18 0.00 6.53
462 463 0.248289 TCTACTAGTTGTTGGGGCGC 59.752 55.000 0.00 0.00 0.00 6.53
463 464 2.981859 ATCTACTAGTTGTTGGGGCG 57.018 50.000 0.00 0.00 0.00 6.13
464 465 4.894114 TCTCTATCTACTAGTTGTTGGGGC 59.106 45.833 0.00 0.00 0.00 5.80
465 466 7.070074 ACATTCTCTATCTACTAGTTGTTGGGG 59.930 40.741 0.00 0.00 0.00 4.96
466 467 7.923344 CACATTCTCTATCTACTAGTTGTTGGG 59.077 40.741 0.00 0.00 0.00 4.12
467 468 7.923344 CCACATTCTCTATCTACTAGTTGTTGG 59.077 40.741 0.00 0.00 0.00 3.77
468 469 7.436673 GCCACATTCTCTATCTACTAGTTGTTG 59.563 40.741 0.00 0.00 0.00 3.33
469 470 7.418025 GGCCACATTCTCTATCTACTAGTTGTT 60.418 40.741 0.00 0.00 0.00 2.83
470 471 6.041069 GGCCACATTCTCTATCTACTAGTTGT 59.959 42.308 0.00 0.00 0.00 3.32
471 472 6.451393 GGCCACATTCTCTATCTACTAGTTG 58.549 44.000 0.00 0.00 0.00 3.16
472 473 5.241949 CGGCCACATTCTCTATCTACTAGTT 59.758 44.000 2.24 0.00 0.00 2.24
473 474 4.762765 CGGCCACATTCTCTATCTACTAGT 59.237 45.833 2.24 0.00 0.00 2.57
474 475 4.380023 GCGGCCACATTCTCTATCTACTAG 60.380 50.000 2.24 0.00 0.00 2.57
475 476 3.506455 GCGGCCACATTCTCTATCTACTA 59.494 47.826 2.24 0.00 0.00 1.82
476 477 2.297597 GCGGCCACATTCTCTATCTACT 59.702 50.000 2.24 0.00 0.00 2.57
477 478 2.678324 GCGGCCACATTCTCTATCTAC 58.322 52.381 2.24 0.00 0.00 2.59
493 494 2.038269 TTGATCACCTTTCCGCGGC 61.038 57.895 23.51 2.99 0.00 6.53
511 512 6.831976 ACTGTCAGTGATAAAAAGAAGAGGT 58.168 36.000 4.21 0.00 0.00 3.85
527 528 2.772191 TGGTGGCCCACTGTCAGT 60.772 61.111 14.71 0.00 35.17 3.41
538 539 1.525995 CGGATATGGTGGTGGTGGC 60.526 63.158 0.00 0.00 0.00 5.01
558 559 3.680786 TGGTCACTGACTCGGCGG 61.681 66.667 7.21 0.00 32.47 6.13
607 608 3.963476 TCCTTTCTCCTGGGACAAAAA 57.037 42.857 0.00 0.00 38.70 1.94
609 610 3.436470 CCTTTCCTTTCTCCTGGGACAAA 60.436 47.826 0.00 0.00 38.70 2.83
610 611 2.108250 CCTTTCCTTTCTCCTGGGACAA 59.892 50.000 0.00 0.00 38.70 3.18
611 612 1.705186 CCTTTCCTTTCTCCTGGGACA 59.295 52.381 0.00 0.00 0.00 4.02
612 613 1.985895 TCCTTTCCTTTCTCCTGGGAC 59.014 52.381 0.00 0.00 0.00 4.46
613 614 2.269940 CTCCTTTCCTTTCTCCTGGGA 58.730 52.381 0.00 0.00 0.00 4.37
615 616 1.340502 GCCTCCTTTCCTTTCTCCTGG 60.341 57.143 0.00 0.00 0.00 4.45
616 617 1.632920 AGCCTCCTTTCCTTTCTCCTG 59.367 52.381 0.00 0.00 0.00 3.86
617 618 1.632920 CAGCCTCCTTTCCTTTCTCCT 59.367 52.381 0.00 0.00 0.00 3.69
618 619 1.340502 CCAGCCTCCTTTCCTTTCTCC 60.341 57.143 0.00 0.00 0.00 3.71
619 620 1.952839 GCCAGCCTCCTTTCCTTTCTC 60.953 57.143 0.00 0.00 0.00 2.87
620 621 0.038890 GCCAGCCTCCTTTCCTTTCT 59.961 55.000 0.00 0.00 0.00 2.52
621 622 0.251341 TGCCAGCCTCCTTTCCTTTC 60.251 55.000 0.00 0.00 0.00 2.62
622 623 0.188342 TTGCCAGCCTCCTTTCCTTT 59.812 50.000 0.00 0.00 0.00 3.11
623 624 0.188342 TTTGCCAGCCTCCTTTCCTT 59.812 50.000 0.00 0.00 0.00 3.36
624 625 0.540597 GTTTGCCAGCCTCCTTTCCT 60.541 55.000 0.00 0.00 0.00 3.36
625 626 1.866853 CGTTTGCCAGCCTCCTTTCC 61.867 60.000 0.00 0.00 0.00 3.13
629 630 0.890996 CTTTCGTTTGCCAGCCTCCT 60.891 55.000 0.00 0.00 0.00 3.69
642 643 1.729131 CGCGCCATTTTGCTTTCGT 60.729 52.632 0.00 0.00 0.00 3.85
660 661 1.286501 TGGATTAATCGTGCGAGTGC 58.713 50.000 9.32 0.00 43.20 4.40
661 662 2.866156 ACATGGATTAATCGTGCGAGTG 59.134 45.455 15.47 7.26 0.00 3.51
662 663 2.866156 CACATGGATTAATCGTGCGAGT 59.134 45.455 15.47 0.00 0.00 4.18
663 664 2.866156 ACACATGGATTAATCGTGCGAG 59.134 45.455 17.03 11.10 0.00 5.03
664 665 2.863740 GACACATGGATTAATCGTGCGA 59.136 45.455 17.03 0.00 0.00 5.10
690 691 3.431725 CCACGGCGGCTCCTTTTC 61.432 66.667 13.24 0.00 0.00 2.29
722 723 2.877974 GCGTCGCCGTTTCAACTGT 61.878 57.895 5.75 0.00 36.15 3.55
794 801 2.261037 TTGCTTGCGGATCGATTTTG 57.739 45.000 0.00 0.00 0.00 2.44
803 810 1.896660 GTCTGGGTTTGCTTGCGGA 60.897 57.895 0.00 0.00 0.00 5.54
831 838 3.072476 GCAGAGGAGGTCAGCCAA 58.928 61.111 0.00 0.00 37.19 4.52
834 841 2.267324 GTGGCAGAGGAGGTCAGC 59.733 66.667 0.00 0.00 36.96 4.26
836 843 2.204034 TGGTGGCAGAGGAGGTCA 59.796 61.111 0.00 0.00 0.00 4.02
837 844 2.665603 GTGGTGGCAGAGGAGGTC 59.334 66.667 0.00 0.00 0.00 3.85
838 845 2.930562 GGTGGTGGCAGAGGAGGT 60.931 66.667 0.00 0.00 0.00 3.85
839 846 3.721706 GGGTGGTGGCAGAGGAGG 61.722 72.222 0.00 0.00 0.00 4.30
840 847 4.087892 CGGGTGGTGGCAGAGGAG 62.088 72.222 0.00 0.00 0.00 3.69
843 850 3.030168 TATGCGGGTGGTGGCAGAG 62.030 63.158 0.00 0.00 43.27 3.35
844 851 3.006133 TATGCGGGTGGTGGCAGA 61.006 61.111 0.00 0.00 43.27 4.26
845 852 2.824041 GTATGCGGGTGGTGGCAG 60.824 66.667 0.00 0.00 43.27 4.85
846 853 4.418328 GGTATGCGGGTGGTGGCA 62.418 66.667 0.00 0.00 44.29 4.92
847 854 2.737881 TAGGTATGCGGGTGGTGGC 61.738 63.158 0.00 0.00 0.00 5.01
848 855 1.145377 GTAGGTATGCGGGTGGTGG 59.855 63.158 0.00 0.00 0.00 4.61
849 856 1.145377 GGTAGGTATGCGGGTGGTG 59.855 63.158 0.00 0.00 0.00 4.17
850 857 2.428925 CGGTAGGTATGCGGGTGGT 61.429 63.158 0.00 0.00 0.00 4.16
851 858 2.420043 CGGTAGGTATGCGGGTGG 59.580 66.667 0.00 0.00 0.00 4.61
852 859 1.457823 TAGCGGTAGGTATGCGGGTG 61.458 60.000 0.00 0.00 0.00 4.61
853 860 0.541296 ATAGCGGTAGGTATGCGGGT 60.541 55.000 0.00 0.00 39.36 5.28
854 861 1.466856 TATAGCGGTAGGTATGCGGG 58.533 55.000 0.00 0.00 40.81 6.13
855 862 4.906065 TTATATAGCGGTAGGTATGCGG 57.094 45.455 0.00 0.00 40.81 5.69
856 863 5.039333 GGTTTATATAGCGGTAGGTATGCG 58.961 45.833 0.00 0.00 40.81 4.73
857 864 5.039333 CGGTTTATATAGCGGTAGGTATGC 58.961 45.833 6.85 0.00 40.81 3.14
889 896 3.797546 GCTGCAGTCTCTTGGCGC 61.798 66.667 16.64 0.00 0.00 6.53
904 911 1.300971 CTGCACTGCACGTATTGGCT 61.301 55.000 0.00 0.00 33.79 4.75
961 985 2.256072 CTCACCATGGCCGTGGATGA 62.256 60.000 44.12 36.19 42.02 2.92
962 986 1.820906 CTCACCATGGCCGTGGATG 60.821 63.158 44.12 34.64 42.02 3.51
963 987 1.348008 ATCTCACCATGGCCGTGGAT 61.348 55.000 44.12 27.04 42.02 3.41
964 988 1.971505 GATCTCACCATGGCCGTGGA 61.972 60.000 44.12 26.06 42.02 4.02
965 989 1.524621 GATCTCACCATGGCCGTGG 60.525 63.158 37.77 37.77 45.04 4.94
966 990 1.884464 CGATCTCACCATGGCCGTG 60.884 63.158 18.73 18.73 0.00 4.94
967 991 2.501128 CGATCTCACCATGGCCGT 59.499 61.111 13.04 0.00 0.00 5.68
968 992 2.930385 AAGCGATCTCACCATGGCCG 62.930 60.000 13.04 3.06 0.00 6.13
969 993 1.153086 AAGCGATCTCACCATGGCC 60.153 57.895 13.04 0.00 0.00 5.36
970 994 1.162800 GGAAGCGATCTCACCATGGC 61.163 60.000 13.04 0.00 0.00 4.40
996 1020 1.532794 CCTCCTCCCCTCCATCGAG 60.533 68.421 0.00 0.00 35.72 4.04
1030 1066 4.527583 CTCCCGCTGCTCCTGCTC 62.528 72.222 0.00 0.00 40.48 4.26
1033 1069 4.463879 CACCTCCCGCTGCTCCTG 62.464 72.222 0.00 0.00 0.00 3.86
1181 1217 4.704103 ACAGAGAGCGGGAGGCCA 62.704 66.667 5.01 0.00 45.17 5.36
1268 1304 0.800631 TCTATATGTCTACGCCGGCG 59.199 55.000 44.88 44.88 46.03 6.46
1270 1306 6.228995 TCCTATATCTATATGTCTACGCCGG 58.771 44.000 0.00 0.00 0.00 6.13
1272 1308 7.118680 GCTCTCCTATATCTATATGTCTACGCC 59.881 44.444 0.00 0.00 0.00 5.68
1393 1435 4.025061 CAGAGCATGTAAAGCAGCTACATC 60.025 45.833 7.72 4.44 37.79 3.06
1394 1436 3.875727 CAGAGCATGTAAAGCAGCTACAT 59.124 43.478 5.13 5.13 39.94 2.29
1395 1437 3.264947 CAGAGCATGTAAAGCAGCTACA 58.735 45.455 0.00 0.00 37.48 2.74
1396 1438 3.265791 ACAGAGCATGTAAAGCAGCTAC 58.734 45.455 0.00 0.00 41.60 3.58
1480 1523 2.733227 GCAATGGAAGAACTTGGATGCG 60.733 50.000 0.00 0.00 0.00 4.73
1499 1542 3.953712 TCAATTCTGAAGACGGTAGCA 57.046 42.857 0.00 0.00 0.00 3.49
1500 1543 3.487574 CGATCAATTCTGAAGACGGTAGC 59.512 47.826 0.00 0.00 34.49 3.58
1501 1544 4.921547 TCGATCAATTCTGAAGACGGTAG 58.078 43.478 0.00 0.00 34.49 3.18
1502 1545 4.976224 TCGATCAATTCTGAAGACGGTA 57.024 40.909 0.00 0.00 34.49 4.02
1503 1546 3.868757 TCGATCAATTCTGAAGACGGT 57.131 42.857 0.00 0.00 34.49 4.83
1504 1547 5.046529 AGAATCGATCAATTCTGAAGACGG 58.953 41.667 8.12 0.00 42.88 4.79
1505 1548 6.409232 CAAGAATCGATCAATTCTGAAGACG 58.591 40.000 9.65 0.00 43.53 4.18
1506 1549 6.314896 ACCAAGAATCGATCAATTCTGAAGAC 59.685 38.462 9.65 0.00 43.53 3.01
1507 1550 6.314648 CACCAAGAATCGATCAATTCTGAAGA 59.685 38.462 9.65 0.00 43.53 2.87
1521 1564 1.672881 GCCCAATCTCACCAAGAATCG 59.327 52.381 0.00 0.00 37.61 3.34
1522 1565 2.424956 GTGCCCAATCTCACCAAGAATC 59.575 50.000 0.00 0.00 37.61 2.52
1523 1566 2.450476 GTGCCCAATCTCACCAAGAAT 58.550 47.619 0.00 0.00 37.61 2.40
1524 1567 1.881925 CGTGCCCAATCTCACCAAGAA 60.882 52.381 0.00 0.00 37.61 2.52
1526 1569 0.321564 TCGTGCCCAATCTCACCAAG 60.322 55.000 0.00 0.00 0.00 3.61
1527 1570 0.109532 TTCGTGCCCAATCTCACCAA 59.890 50.000 0.00 0.00 0.00 3.67
1529 1572 1.243902 TTTTCGTGCCCAATCTCACC 58.756 50.000 0.00 0.00 0.00 4.02
1538 1582 1.582610 TTCTGCGGATTTTCGTGCCC 61.583 55.000 0.00 0.00 0.00 5.36
1543 1587 1.606606 GTGCTTTCTGCGGATTTTCG 58.393 50.000 0.00 0.00 46.63 3.46
1545 1589 0.240945 CGGTGCTTTCTGCGGATTTT 59.759 50.000 0.00 0.00 46.63 1.82
1559 1603 1.819632 ATCCTCGATTTGCCGGTGC 60.820 57.895 1.90 0.00 38.26 5.01
1607 1673 2.343163 GATCTGTGCCTCCCGTCTCG 62.343 65.000 0.00 0.00 0.00 4.04
1659 1725 0.039798 GGATGCGAACGCGACCTATA 60.040 55.000 15.93 0.00 45.51 1.31
1664 1730 3.126722 CTTCGGATGCGAACGCGAC 62.127 63.158 18.67 5.44 45.51 5.19
1665 1731 2.878991 CTTCGGATGCGAACGCGA 60.879 61.111 18.67 0.00 45.51 5.87
1666 1732 3.913573 CCTTCGGATGCGAACGCG 61.914 66.667 18.67 3.53 45.51 6.01
1667 1733 2.813908 ACCTTCGGATGCGAACGC 60.814 61.111 18.67 12.33 42.35 4.84
1668 1734 0.457166 TACACCTTCGGATGCGAACG 60.457 55.000 18.67 16.45 0.00 3.95
1671 1737 1.399714 AGATACACCTTCGGATGCGA 58.600 50.000 4.75 4.75 0.00 5.10
1672 1738 2.128035 GAAGATACACCTTCGGATGCG 58.872 52.381 0.00 0.00 34.01 4.73
1680 1753 7.487822 TCTTCATTCTGAGAAGATACACCTT 57.512 36.000 0.00 0.00 44.69 3.50
1736 1809 1.436195 TTCAGCCACGTGCACAGAAC 61.436 55.000 18.64 3.11 44.83 3.01
1826 2296 5.869344 GGTTGGAAAAATCTATGGAAACTGC 59.131 40.000 0.00 0.00 0.00 4.40
1875 2352 3.377798 ACGCAGGTCGGTAAAAAGAAAAA 59.622 39.130 0.00 0.00 43.86 1.94
1876 2353 2.944349 ACGCAGGTCGGTAAAAAGAAAA 59.056 40.909 0.00 0.00 43.86 2.29
1880 2357 1.662026 GCAACGCAGGTCGGTAAAAAG 60.662 52.381 0.00 0.00 43.86 2.27
1888 2365 2.661537 TGTCAGCAACGCAGGTCG 60.662 61.111 0.00 0.00 45.38 4.79
1889 2366 2.939022 GTGTCAGCAACGCAGGTC 59.061 61.111 0.00 0.00 38.31 3.85
1890 2367 2.967076 CGTGTCAGCAACGCAGGT 60.967 61.111 4.07 0.00 38.34 4.00
1911 2388 2.124819 ATGCTTCTCCTGGCTGCG 60.125 61.111 0.00 0.00 0.00 5.18
1986 2463 4.508662 CCTCCCTCGATTATTATCTTGGC 58.491 47.826 0.00 0.00 0.00 4.52
2098 2575 1.033574 AGCCGTGCATCCTACTACTC 58.966 55.000 0.00 0.00 0.00 2.59
2099 2576 0.747255 CAGCCGTGCATCCTACTACT 59.253 55.000 0.00 0.00 0.00 2.57
2100 2577 3.274393 CAGCCGTGCATCCTACTAC 57.726 57.895 0.00 0.00 0.00 2.73
2154 2639 2.184322 CGACAGTGGATGGACCCG 59.816 66.667 0.00 0.00 38.00 5.28
2158 2643 1.592400 GGACGTCGACAGTGGATGGA 61.592 60.000 17.16 0.00 0.00 3.41
2171 2656 2.732094 CACGTTCGGTGGGACGTC 60.732 66.667 7.13 7.13 43.16 4.34
2192 2677 2.668945 CCAATACGTCACGCAATACACA 59.331 45.455 0.00 0.00 0.00 3.72
2208 2693 0.623723 GGCTCCAGGTTCACCCAATA 59.376 55.000 0.00 0.00 36.42 1.90
2213 2698 3.959991 GAGCGGCTCCAGGTTCACC 62.960 68.421 19.20 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.