Multiple sequence alignment - TraesCS5A01G205200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G205200 chr5A 100.000 3023 0 0 1 3023 414935854 414932832 0.000000e+00 5583
1 TraesCS5A01G205200 chr5D 90.238 2520 122 45 562 3023 319253832 319256285 0.000000e+00 3177
2 TraesCS5A01G205200 chr5D 93.305 239 15 1 337 574 319253573 319253811 4.800000e-93 351
3 TraesCS5A01G205200 chr5B 90.685 2351 124 36 337 2625 369484766 369487083 0.000000e+00 3040
4 TraesCS5A01G205200 chr5B 91.005 378 26 3 2649 3023 369487382 369487754 1.250000e-138 503
5 TraesCS5A01G205200 chr7B 90.780 141 12 1 997 1136 128822078 128822218 1.430000e-43 187
6 TraesCS5A01G205200 chr7B 89.655 116 12 0 1431 1546 128822546 128822661 6.750000e-32 148
7 TraesCS5A01G205200 chr7D 90.714 140 12 1 998 1136 165634711 165634850 5.150000e-43 185
8 TraesCS5A01G205200 chr7D 89.655 116 12 0 1431 1546 165635182 165635297 6.750000e-32 148
9 TraesCS5A01G205200 chr7A 90.210 143 13 1 995 1136 167179676 167179818 5.150000e-43 185
10 TraesCS5A01G205200 chr7A 89.655 116 12 0 1431 1546 167180154 167180269 6.750000e-32 148
11 TraesCS5A01G205200 chr6A 90.511 137 11 2 1001 1136 525992595 525992460 2.390000e-41 180
12 TraesCS5A01G205200 chr6D 89.706 136 12 2 1001 1135 383745561 383745427 4.010000e-39 172
13 TraesCS5A01G205200 chr6D 84.028 144 21 2 1433 1575 383745099 383744957 1.460000e-28 137
14 TraesCS5A01G205200 chr6B 88.971 136 13 2 1001 1135 574021484 574021350 1.860000e-37 167
15 TraesCS5A01G205200 chr6B 85.385 130 18 1 1433 1561 574021034 574020905 1.890000e-27 134
16 TraesCS5A01G205200 chr2D 86.667 135 14 4 1297 1429 555395466 555395598 2.430000e-31 147
17 TraesCS5A01G205200 chr2D 86.885 122 12 4 1310 1429 165468246 165468127 1.890000e-27 134
18 TraesCS5A01G205200 chr4A 93.617 94 5 1 998 1090 406202731 406202638 4.060000e-29 139
19 TraesCS5A01G205200 chr2B 85.185 135 16 4 1297 1429 662373402 662373534 5.260000e-28 135
20 TraesCS5A01G205200 chr2A 86.885 122 12 4 1310 1429 185285018 185285137 1.890000e-27 134
21 TraesCS5A01G205200 chr2A 83.051 118 20 0 1297 1414 564218613 564218730 1.150000e-19 108
22 TraesCS5A01G205200 chr2A 81.818 121 20 2 1431 1550 696316042 696316161 1.920000e-17 100
23 TraesCS5A01G205200 chr1A 76.961 204 37 8 1316 1514 569139367 569139169 1.150000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G205200 chr5A 414932832 414935854 3022 True 5583.0 5583 100.0000 1 3023 1 chr5A.!!$R1 3022
1 TraesCS5A01G205200 chr5D 319253573 319256285 2712 False 1764.0 3177 91.7715 337 3023 2 chr5D.!!$F1 2686
2 TraesCS5A01G205200 chr5B 369484766 369487754 2988 False 1771.5 3040 90.8450 337 3023 2 chr5B.!!$F1 2686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 269 0.030638 CCCTCCAAATATTTGCGGCG 59.969 55.0 20.67 0.51 36.86 6.46 F
878 928 0.031178 GTGCCACCAAAACAGAGCTG 59.969 55.0 0.00 0.00 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1723 0.108615 AGAACATGTCCTCTTCGGCG 60.109 55.0 0.00 0.0 0.0 6.46 R
2294 2365 0.039764 TCCTTCCGAAGAGCTGAGGA 59.960 55.0 9.87 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.166367 GCACTTTTGATGAACTTTTGCTATAG 57.834 34.615 0.00 0.00 0.00 1.31
26 27 7.201384 GCACTTTTGATGAACTTTTGCTATAGC 60.201 37.037 18.18 18.18 42.50 2.97
27 28 7.274250 CACTTTTGATGAACTTTTGCTATAGCC 59.726 37.037 21.84 5.18 41.18 3.93
28 29 6.832520 TTTGATGAACTTTTGCTATAGCCA 57.167 33.333 21.84 8.47 41.18 4.75
29 30 6.832520 TTGATGAACTTTTGCTATAGCCAA 57.167 33.333 21.84 14.51 41.18 4.52
30 31 6.441093 TGATGAACTTTTGCTATAGCCAAG 57.559 37.500 21.84 22.61 41.18 3.61
31 32 5.945784 TGATGAACTTTTGCTATAGCCAAGT 59.054 36.000 24.10 24.10 42.11 3.16
32 33 5.627499 TGAACTTTTGCTATAGCCAAGTG 57.373 39.130 27.70 19.06 40.52 3.16
33 34 5.312895 TGAACTTTTGCTATAGCCAAGTGA 58.687 37.500 27.70 19.23 40.52 3.41
34 35 5.945784 TGAACTTTTGCTATAGCCAAGTGAT 59.054 36.000 27.70 18.73 40.52 3.06
35 36 7.109501 TGAACTTTTGCTATAGCCAAGTGATA 58.890 34.615 27.70 18.64 40.52 2.15
36 37 7.775093 TGAACTTTTGCTATAGCCAAGTGATAT 59.225 33.333 27.70 17.97 40.52 1.63
37 38 7.736447 ACTTTTGCTATAGCCAAGTGATATC 57.264 36.000 26.96 0.00 40.15 1.63
38 39 7.282585 ACTTTTGCTATAGCCAAGTGATATCA 58.717 34.615 26.96 0.00 40.15 2.15
39 40 7.775093 ACTTTTGCTATAGCCAAGTGATATCAA 59.225 33.333 26.96 9.28 40.15 2.57
40 41 7.496529 TTTGCTATAGCCAAGTGATATCAAC 57.503 36.000 21.84 2.20 41.18 3.18
41 42 6.425210 TGCTATAGCCAAGTGATATCAACT 57.575 37.500 21.84 4.58 41.18 3.16
42 43 6.226052 TGCTATAGCCAAGTGATATCAACTG 58.774 40.000 21.84 7.58 41.18 3.16
43 44 5.121454 GCTATAGCCAAGTGATATCAACTGC 59.879 44.000 14.13 8.17 34.31 4.40
44 45 3.641434 AGCCAAGTGATATCAACTGCT 57.359 42.857 7.07 10.28 0.00 4.24
45 46 4.760530 AGCCAAGTGATATCAACTGCTA 57.239 40.909 7.07 0.00 0.00 3.49
46 47 5.301835 AGCCAAGTGATATCAACTGCTAT 57.698 39.130 7.07 0.00 0.00 2.97
47 48 5.688807 AGCCAAGTGATATCAACTGCTATT 58.311 37.500 7.07 0.00 0.00 1.73
48 49 5.530171 AGCCAAGTGATATCAACTGCTATTG 59.470 40.000 7.07 4.56 0.00 1.90
49 50 5.755813 CCAAGTGATATCAACTGCTATTGC 58.244 41.667 7.07 0.00 40.20 3.56
63 64 3.097877 CTATTGCAGCTATGACCGTCA 57.902 47.619 3.10 3.10 0.00 4.35
64 65 2.401583 ATTGCAGCTATGACCGTCAA 57.598 45.000 5.07 0.00 0.00 3.18
65 66 2.177394 TTGCAGCTATGACCGTCAAA 57.823 45.000 5.07 0.00 0.00 2.69
66 67 1.725641 TGCAGCTATGACCGTCAAAG 58.274 50.000 5.07 0.00 0.00 2.77
67 68 1.009829 GCAGCTATGACCGTCAAAGG 58.990 55.000 5.07 0.29 37.30 3.11
68 69 1.656652 CAGCTATGACCGTCAAAGGG 58.343 55.000 5.07 0.00 35.02 3.95
69 70 0.107654 AGCTATGACCGTCAAAGGGC 60.108 55.000 5.07 7.62 40.61 5.19
70 71 1.095807 GCTATGACCGTCAAAGGGCC 61.096 60.000 5.07 0.00 39.00 5.80
71 72 0.810031 CTATGACCGTCAAAGGGCCG 60.810 60.000 5.07 0.00 39.00 6.13
72 73 1.546589 TATGACCGTCAAAGGGCCGT 61.547 55.000 5.07 0.00 39.00 5.68
73 74 2.281276 GACCGTCAAAGGGCCGTT 60.281 61.111 4.45 4.45 31.48 4.44
74 75 1.004679 GACCGTCAAAGGGCCGTTA 60.005 57.895 11.83 0.00 31.48 3.18
75 76 0.603439 GACCGTCAAAGGGCCGTTAA 60.603 55.000 11.83 0.00 31.48 2.01
76 77 0.886043 ACCGTCAAAGGGCCGTTAAC 60.886 55.000 11.83 11.72 35.02 2.01
77 78 0.604511 CCGTCAAAGGGCCGTTAACT 60.605 55.000 11.83 0.00 0.00 2.24
78 79 1.232119 CGTCAAAGGGCCGTTAACTT 58.768 50.000 11.83 0.00 0.00 2.66
79 80 1.605232 CGTCAAAGGGCCGTTAACTTT 59.395 47.619 11.83 4.54 34.99 2.66
80 81 2.350102 CGTCAAAGGGCCGTTAACTTTC 60.350 50.000 11.83 0.00 32.52 2.62
81 82 1.874872 TCAAAGGGCCGTTAACTTTCG 59.125 47.619 11.83 3.44 32.52 3.46
82 83 0.594602 AAAGGGCCGTTAACTTTCGC 59.405 50.000 11.83 0.07 28.96 4.70
83 84 1.239296 AAGGGCCGTTAACTTTCGCC 61.239 55.000 9.42 8.85 0.00 5.54
84 85 1.967494 GGGCCGTTAACTTTCGCCA 60.967 57.895 18.60 0.00 0.00 5.69
85 86 1.517210 GGGCCGTTAACTTTCGCCAA 61.517 55.000 18.60 0.00 0.00 4.52
86 87 0.311477 GGCCGTTAACTTTCGCCAAA 59.689 50.000 14.42 0.00 0.00 3.28
87 88 1.068125 GGCCGTTAACTTTCGCCAAAT 60.068 47.619 14.42 0.00 0.00 2.32
88 89 2.608506 GGCCGTTAACTTTCGCCAAATT 60.609 45.455 14.42 0.00 0.00 1.82
89 90 2.407026 GCCGTTAACTTTCGCCAAATTG 59.593 45.455 3.71 0.00 0.00 2.32
90 91 2.407026 CCGTTAACTTTCGCCAAATTGC 59.593 45.455 3.71 0.00 0.00 3.56
91 92 3.046390 CGTTAACTTTCGCCAAATTGCA 58.954 40.909 3.71 0.00 0.00 4.08
92 93 3.672867 CGTTAACTTTCGCCAAATTGCAT 59.327 39.130 3.71 0.00 0.00 3.96
93 94 4.854291 CGTTAACTTTCGCCAAATTGCATA 59.146 37.500 3.71 0.00 0.00 3.14
94 95 5.003402 CGTTAACTTTCGCCAAATTGCATAG 59.997 40.000 3.71 0.00 0.00 2.23
95 96 4.782019 AACTTTCGCCAAATTGCATAGA 57.218 36.364 0.00 0.00 0.00 1.98
96 97 4.782019 ACTTTCGCCAAATTGCATAGAA 57.218 36.364 0.00 0.00 0.00 2.10
97 98 4.737054 ACTTTCGCCAAATTGCATAGAAG 58.263 39.130 0.00 0.00 0.00 2.85
98 99 4.218417 ACTTTCGCCAAATTGCATAGAAGT 59.782 37.500 0.00 0.00 0.00 3.01
99 100 4.355543 TTCGCCAAATTGCATAGAAGTC 57.644 40.909 0.00 0.00 0.00 3.01
100 101 2.351418 TCGCCAAATTGCATAGAAGTCG 59.649 45.455 0.00 0.00 0.00 4.18
101 102 2.539547 CGCCAAATTGCATAGAAGTCGG 60.540 50.000 0.00 0.00 0.00 4.79
102 103 2.682856 GCCAAATTGCATAGAAGTCGGA 59.317 45.455 0.00 0.00 0.00 4.55
103 104 3.242870 GCCAAATTGCATAGAAGTCGGAG 60.243 47.826 0.00 0.00 0.00 4.63
104 105 4.191544 CCAAATTGCATAGAAGTCGGAGA 58.808 43.478 0.00 0.00 0.00 3.71
105 106 4.635765 CCAAATTGCATAGAAGTCGGAGAA 59.364 41.667 0.00 0.00 39.69 2.87
106 107 5.123820 CCAAATTGCATAGAAGTCGGAGAAA 59.876 40.000 0.00 0.00 39.69 2.52
107 108 5.803020 AATTGCATAGAAGTCGGAGAAAC 57.197 39.130 0.00 0.00 39.69 2.78
108 109 4.537135 TTGCATAGAAGTCGGAGAAACT 57.463 40.909 0.00 0.00 39.69 2.66
109 110 4.537135 TGCATAGAAGTCGGAGAAACTT 57.463 40.909 0.00 0.00 39.69 2.66
110 111 5.654603 TGCATAGAAGTCGGAGAAACTTA 57.345 39.130 0.00 0.00 39.69 2.24
111 112 5.651530 TGCATAGAAGTCGGAGAAACTTAG 58.348 41.667 0.00 0.00 39.69 2.18
112 113 4.504826 GCATAGAAGTCGGAGAAACTTAGC 59.495 45.833 0.00 0.00 39.69 3.09
113 114 3.219052 AGAAGTCGGAGAAACTTAGCG 57.781 47.619 0.00 0.00 39.69 4.26
114 115 1.654602 GAAGTCGGAGAAACTTAGCGC 59.345 52.381 0.00 0.00 39.69 5.92
115 116 0.108756 AGTCGGAGAAACTTAGCGCC 60.109 55.000 2.29 0.00 39.69 6.53
116 117 1.153901 TCGGAGAAACTTAGCGCCG 60.154 57.895 2.29 0.00 46.68 6.46
117 118 2.799540 CGGAGAAACTTAGCGCCGC 61.800 63.158 2.29 0.00 40.35 6.53
118 119 1.448013 GGAGAAACTTAGCGCCGCT 60.448 57.895 18.67 18.67 43.41 5.52
119 120 0.179119 GGAGAAACTTAGCGCCGCTA 60.179 55.000 15.99 15.99 40.44 4.26
120 121 1.538419 GGAGAAACTTAGCGCCGCTAT 60.538 52.381 20.79 4.40 41.01 2.97
121 122 2.202566 GAGAAACTTAGCGCCGCTATT 58.797 47.619 20.79 11.49 41.01 1.73
122 123 2.608090 GAGAAACTTAGCGCCGCTATTT 59.392 45.455 20.79 17.68 41.01 1.40
123 124 2.608090 AGAAACTTAGCGCCGCTATTTC 59.392 45.455 26.19 26.19 41.01 2.17
124 125 2.018542 AACTTAGCGCCGCTATTTCA 57.981 45.000 20.79 3.66 41.01 2.69
125 126 2.018542 ACTTAGCGCCGCTATTTCAA 57.981 45.000 20.79 5.28 41.01 2.69
126 127 2.352388 ACTTAGCGCCGCTATTTCAAA 58.648 42.857 20.79 4.48 41.01 2.69
127 128 2.943033 ACTTAGCGCCGCTATTTCAAAT 59.057 40.909 20.79 0.00 41.01 2.32
128 129 3.377172 ACTTAGCGCCGCTATTTCAAATT 59.623 39.130 20.79 0.00 41.01 1.82
129 130 2.939460 AGCGCCGCTATTTCAAATTT 57.061 40.000 11.29 0.00 36.99 1.82
130 131 2.529151 AGCGCCGCTATTTCAAATTTG 58.471 42.857 11.29 12.15 36.99 2.32
131 132 1.006079 GCGCCGCTATTTCAAATTTGC 60.006 47.619 13.54 0.00 0.00 3.68
132 133 2.529151 CGCCGCTATTTCAAATTTGCT 58.471 42.857 13.54 3.48 0.00 3.91
133 134 2.923020 CGCCGCTATTTCAAATTTGCTT 59.077 40.909 13.54 3.31 0.00 3.91
134 135 3.367630 CGCCGCTATTTCAAATTTGCTTT 59.632 39.130 13.54 2.97 0.00 3.51
135 136 4.143137 CGCCGCTATTTCAAATTTGCTTTT 60.143 37.500 13.54 1.28 0.00 2.27
136 137 5.315982 GCCGCTATTTCAAATTTGCTTTTC 58.684 37.500 13.54 0.60 0.00 2.29
137 138 5.107143 GCCGCTATTTCAAATTTGCTTTTCA 60.107 36.000 13.54 0.00 0.00 2.69
138 139 6.565623 GCCGCTATTTCAAATTTGCTTTTCAA 60.566 34.615 13.54 0.00 0.00 2.69
139 140 7.520686 CCGCTATTTCAAATTTGCTTTTCAAT 58.479 30.769 13.54 6.94 34.12 2.57
140 141 7.479291 CCGCTATTTCAAATTTGCTTTTCAATG 59.521 33.333 13.54 0.00 34.12 2.82
141 142 7.479291 CGCTATTTCAAATTTGCTTTTCAATGG 59.521 33.333 13.54 7.40 34.12 3.16
142 143 8.505625 GCTATTTCAAATTTGCTTTTCAATGGA 58.494 29.630 13.54 0.00 34.12 3.41
144 145 6.864360 TTCAAATTTGCTTTTCAATGGAGG 57.136 33.333 13.54 0.00 34.12 4.30
145 146 6.172136 TCAAATTTGCTTTTCAATGGAGGA 57.828 33.333 13.54 0.00 34.12 3.71
146 147 6.225318 TCAAATTTGCTTTTCAATGGAGGAG 58.775 36.000 13.54 0.00 34.12 3.69
147 148 6.041865 TCAAATTTGCTTTTCAATGGAGGAGA 59.958 34.615 13.54 0.00 34.12 3.71
148 149 6.423776 AATTTGCTTTTCAATGGAGGAGAA 57.576 33.333 0.00 0.00 34.12 2.87
149 150 5.867903 TTTGCTTTTCAATGGAGGAGAAA 57.132 34.783 0.00 0.00 34.12 2.52
150 151 5.867903 TTGCTTTTCAATGGAGGAGAAAA 57.132 34.783 0.00 0.00 38.50 2.29
155 156 5.712152 TTTCAATGGAGGAGAAAAGAAGC 57.288 39.130 0.00 0.00 0.00 3.86
156 157 4.647564 TCAATGGAGGAGAAAAGAAGCT 57.352 40.909 0.00 0.00 0.00 3.74
157 158 4.990526 TCAATGGAGGAGAAAAGAAGCTT 58.009 39.130 0.00 0.00 0.00 3.74
158 159 4.763793 TCAATGGAGGAGAAAAGAAGCTTG 59.236 41.667 2.10 0.00 0.00 4.01
159 160 3.864789 TGGAGGAGAAAAGAAGCTTGT 57.135 42.857 2.10 0.00 0.00 3.16
160 161 3.480470 TGGAGGAGAAAAGAAGCTTGTG 58.520 45.455 2.10 0.00 0.00 3.33
161 162 2.227626 GGAGGAGAAAAGAAGCTTGTGC 59.772 50.000 2.10 0.00 40.05 4.57
162 163 2.227626 GAGGAGAAAAGAAGCTTGTGCC 59.772 50.000 2.10 0.00 40.80 5.01
163 164 1.956477 GGAGAAAAGAAGCTTGTGCCA 59.044 47.619 2.10 0.00 40.80 4.92
164 165 2.030451 GGAGAAAAGAAGCTTGTGCCAG 60.030 50.000 2.10 0.00 40.80 4.85
165 166 2.620585 GAGAAAAGAAGCTTGTGCCAGT 59.379 45.455 2.10 0.00 40.80 4.00
166 167 3.026694 AGAAAAGAAGCTTGTGCCAGTT 58.973 40.909 2.10 0.00 40.80 3.16
167 168 3.448660 AGAAAAGAAGCTTGTGCCAGTTT 59.551 39.130 2.10 0.00 40.80 2.66
168 169 3.893326 AAAGAAGCTTGTGCCAGTTTT 57.107 38.095 2.10 0.00 40.80 2.43
169 170 3.443099 AAGAAGCTTGTGCCAGTTTTC 57.557 42.857 2.10 0.00 40.80 2.29
170 171 2.378038 AGAAGCTTGTGCCAGTTTTCA 58.622 42.857 2.10 0.00 40.80 2.69
171 172 2.961062 AGAAGCTTGTGCCAGTTTTCAT 59.039 40.909 2.10 0.00 40.80 2.57
172 173 3.005155 AGAAGCTTGTGCCAGTTTTCATC 59.995 43.478 2.10 0.00 40.80 2.92
173 174 2.309613 AGCTTGTGCCAGTTTTCATCA 58.690 42.857 0.00 0.00 40.80 3.07
174 175 2.895404 AGCTTGTGCCAGTTTTCATCAT 59.105 40.909 0.00 0.00 40.80 2.45
175 176 2.991190 GCTTGTGCCAGTTTTCATCATG 59.009 45.455 0.00 0.00 0.00 3.07
176 177 2.728690 TGTGCCAGTTTTCATCATGC 57.271 45.000 0.00 0.00 0.00 4.06
177 178 1.068402 TGTGCCAGTTTTCATCATGCG 60.068 47.619 0.00 0.00 0.00 4.73
178 179 0.527113 TGCCAGTTTTCATCATGCGG 59.473 50.000 0.00 0.00 0.00 5.69
179 180 0.527565 GCCAGTTTTCATCATGCGGT 59.472 50.000 0.00 0.00 0.00 5.68
180 181 1.733389 GCCAGTTTTCATCATGCGGTG 60.733 52.381 0.00 0.00 0.00 4.94
181 182 1.135315 CCAGTTTTCATCATGCGGTGG 60.135 52.381 0.00 0.00 0.00 4.61
182 183 0.527565 AGTTTTCATCATGCGGTGGC 59.472 50.000 0.00 0.00 40.52 5.01
183 184 0.458370 GTTTTCATCATGCGGTGGCC 60.458 55.000 0.00 0.00 38.85 5.36
184 185 1.603236 TTTTCATCATGCGGTGGCCC 61.603 55.000 0.00 0.00 38.85 5.80
185 186 2.778055 TTTCATCATGCGGTGGCCCA 62.778 55.000 0.00 0.00 38.85 5.36
186 187 2.755064 CATCATGCGGTGGCCCAA 60.755 61.111 0.00 0.00 38.85 4.12
187 188 2.037049 ATCATGCGGTGGCCCAAA 59.963 55.556 0.00 0.00 38.85 3.28
188 189 1.608918 ATCATGCGGTGGCCCAAAA 60.609 52.632 0.00 0.00 38.85 2.44
189 190 1.606885 ATCATGCGGTGGCCCAAAAG 61.607 55.000 0.00 0.00 38.85 2.27
190 191 3.694538 ATGCGGTGGCCCAAAAGC 61.695 61.111 0.00 0.00 38.85 3.51
191 192 4.912395 TGCGGTGGCCCAAAAGCT 62.912 61.111 0.00 0.00 38.85 3.74
192 193 2.675075 GCGGTGGCCCAAAAGCTA 60.675 61.111 0.00 0.00 0.00 3.32
193 194 2.272447 GCGGTGGCCCAAAAGCTAA 61.272 57.895 0.00 0.00 0.00 3.09
194 195 1.584495 CGGTGGCCCAAAAGCTAAC 59.416 57.895 0.00 0.00 0.00 2.34
195 196 1.873270 CGGTGGCCCAAAAGCTAACC 61.873 60.000 0.00 0.00 36.61 2.85
196 197 0.830023 GGTGGCCCAAAAGCTAACCA 60.830 55.000 0.00 0.00 38.53 3.67
197 198 1.266178 GTGGCCCAAAAGCTAACCAT 58.734 50.000 0.00 0.00 0.00 3.55
198 199 2.452505 GTGGCCCAAAAGCTAACCATA 58.547 47.619 0.00 0.00 0.00 2.74
199 200 2.829120 GTGGCCCAAAAGCTAACCATAA 59.171 45.455 0.00 0.00 0.00 1.90
200 201 3.259625 GTGGCCCAAAAGCTAACCATAAA 59.740 43.478 0.00 0.00 0.00 1.40
201 202 4.081142 GTGGCCCAAAAGCTAACCATAAAT 60.081 41.667 0.00 0.00 0.00 1.40
202 203 4.161377 TGGCCCAAAAGCTAACCATAAATC 59.839 41.667 0.00 0.00 0.00 2.17
203 204 4.161377 GGCCCAAAAGCTAACCATAAATCA 59.839 41.667 0.00 0.00 0.00 2.57
204 205 5.351458 GCCCAAAAGCTAACCATAAATCAG 58.649 41.667 0.00 0.00 0.00 2.90
205 206 5.682212 GCCCAAAAGCTAACCATAAATCAGG 60.682 44.000 0.00 0.00 0.00 3.86
206 207 5.163416 CCCAAAAGCTAACCATAAATCAGGG 60.163 44.000 0.00 0.00 0.00 4.45
207 208 5.351458 CAAAAGCTAACCATAAATCAGGGC 58.649 41.667 0.00 0.00 0.00 5.19
208 209 2.851195 AGCTAACCATAAATCAGGGCG 58.149 47.619 0.00 0.00 0.00 6.13
209 210 2.438021 AGCTAACCATAAATCAGGGCGA 59.562 45.455 0.00 0.00 0.00 5.54
210 211 2.808543 GCTAACCATAAATCAGGGCGAG 59.191 50.000 0.00 0.00 0.00 5.03
211 212 1.680338 AACCATAAATCAGGGCGAGC 58.320 50.000 0.00 0.00 0.00 5.03
212 213 0.546122 ACCATAAATCAGGGCGAGCA 59.454 50.000 0.00 0.00 0.00 4.26
213 214 0.947244 CCATAAATCAGGGCGAGCAC 59.053 55.000 0.00 0.00 0.00 4.40
214 215 1.667236 CATAAATCAGGGCGAGCACA 58.333 50.000 0.00 0.00 0.00 4.57
215 216 2.224606 CATAAATCAGGGCGAGCACAT 58.775 47.619 0.00 0.00 0.00 3.21
216 217 3.402110 CATAAATCAGGGCGAGCACATA 58.598 45.455 0.00 0.00 0.00 2.29
217 218 1.959042 AAATCAGGGCGAGCACATAG 58.041 50.000 0.00 0.00 0.00 2.23
218 219 1.123077 AATCAGGGCGAGCACATAGA 58.877 50.000 0.00 0.00 0.00 1.98
219 220 1.123077 ATCAGGGCGAGCACATAGAA 58.877 50.000 0.00 0.00 0.00 2.10
220 221 0.901827 TCAGGGCGAGCACATAGAAA 59.098 50.000 0.00 0.00 0.00 2.52
221 222 1.009829 CAGGGCGAGCACATAGAAAC 58.990 55.000 0.00 0.00 0.00 2.78
222 223 0.107654 AGGGCGAGCACATAGAAACC 60.108 55.000 0.00 0.00 0.00 3.27
223 224 0.392461 GGGCGAGCACATAGAAACCA 60.392 55.000 0.00 0.00 0.00 3.67
224 225 1.668419 GGCGAGCACATAGAAACCAT 58.332 50.000 0.00 0.00 0.00 3.55
225 226 2.484770 GGGCGAGCACATAGAAACCATA 60.485 50.000 0.00 0.00 0.00 2.74
226 227 3.403038 GGCGAGCACATAGAAACCATAT 58.597 45.455 0.00 0.00 0.00 1.78
227 228 3.187227 GGCGAGCACATAGAAACCATATG 59.813 47.826 0.00 0.00 36.81 1.78
228 229 3.364366 GCGAGCACATAGAAACCATATGC 60.364 47.826 0.00 0.00 34.59 3.14
229 230 3.187227 CGAGCACATAGAAACCATATGCC 59.813 47.826 0.00 0.00 34.59 4.40
230 231 4.392940 GAGCACATAGAAACCATATGCCT 58.607 43.478 0.00 0.00 34.59 4.75
231 232 5.551233 GAGCACATAGAAACCATATGCCTA 58.449 41.667 0.00 0.00 34.59 3.93
232 233 6.131972 AGCACATAGAAACCATATGCCTAT 57.868 37.500 0.00 0.00 34.59 2.57
233 234 6.176183 AGCACATAGAAACCATATGCCTATC 58.824 40.000 0.00 0.00 34.59 2.08
234 235 5.355350 GCACATAGAAACCATATGCCTATCC 59.645 44.000 0.00 0.00 34.59 2.59
235 236 6.475504 CACATAGAAACCATATGCCTATCCA 58.524 40.000 0.00 0.00 34.59 3.41
236 237 7.114754 CACATAGAAACCATATGCCTATCCAT 58.885 38.462 0.00 0.00 34.59 3.41
237 238 7.613022 CACATAGAAACCATATGCCTATCCATT 59.387 37.037 0.00 0.00 34.59 3.16
238 239 7.831193 ACATAGAAACCATATGCCTATCCATTC 59.169 37.037 0.00 0.00 34.59 2.67
239 240 5.574188 AGAAACCATATGCCTATCCATTCC 58.426 41.667 0.00 0.00 0.00 3.01
240 241 4.322057 AACCATATGCCTATCCATTCCC 57.678 45.455 0.00 0.00 0.00 3.97
241 242 2.582636 ACCATATGCCTATCCATTCCCC 59.417 50.000 0.00 0.00 0.00 4.81
242 243 2.854967 CCATATGCCTATCCATTCCCCT 59.145 50.000 0.00 0.00 0.00 4.79
243 244 3.117738 CCATATGCCTATCCATTCCCCTC 60.118 52.174 0.00 0.00 0.00 4.30
244 245 2.447582 ATGCCTATCCATTCCCCTCT 57.552 50.000 0.00 0.00 0.00 3.69
245 246 1.734655 TGCCTATCCATTCCCCTCTC 58.265 55.000 0.00 0.00 0.00 3.20
246 247 1.224120 TGCCTATCCATTCCCCTCTCT 59.776 52.381 0.00 0.00 0.00 3.10
247 248 2.343625 GCCTATCCATTCCCCTCTCTT 58.656 52.381 0.00 0.00 0.00 2.85
248 249 2.039613 GCCTATCCATTCCCCTCTCTTG 59.960 54.545 0.00 0.00 0.00 3.02
249 250 2.039613 CCTATCCATTCCCCTCTCTTGC 59.960 54.545 0.00 0.00 0.00 4.01
250 251 0.849417 ATCCATTCCCCTCTCTTGCC 59.151 55.000 0.00 0.00 0.00 4.52
251 252 1.228510 CCATTCCCCTCTCTTGCCC 59.771 63.158 0.00 0.00 0.00 5.36
252 253 1.284841 CCATTCCCCTCTCTTGCCCT 61.285 60.000 0.00 0.00 0.00 5.19
253 254 0.182299 CATTCCCCTCTCTTGCCCTC 59.818 60.000 0.00 0.00 0.00 4.30
254 255 0.990818 ATTCCCCTCTCTTGCCCTCC 60.991 60.000 0.00 0.00 0.00 4.30
255 256 2.285668 CCCCTCTCTTGCCCTCCA 60.286 66.667 0.00 0.00 0.00 3.86
256 257 1.925455 CCCCTCTCTTGCCCTCCAA 60.925 63.158 0.00 0.00 0.00 3.53
257 258 1.500783 CCCCTCTCTTGCCCTCCAAA 61.501 60.000 0.00 0.00 31.94 3.28
258 259 0.627986 CCCTCTCTTGCCCTCCAAAT 59.372 55.000 0.00 0.00 31.94 2.32
259 260 1.846439 CCCTCTCTTGCCCTCCAAATA 59.154 52.381 0.00 0.00 31.94 1.40
260 261 2.444766 CCCTCTCTTGCCCTCCAAATAT 59.555 50.000 0.00 0.00 31.94 1.28
261 262 3.117360 CCCTCTCTTGCCCTCCAAATATT 60.117 47.826 0.00 0.00 31.94 1.28
262 263 4.540715 CCTCTCTTGCCCTCCAAATATTT 58.459 43.478 0.00 0.00 31.94 1.40
263 264 4.340381 CCTCTCTTGCCCTCCAAATATTTG 59.660 45.833 19.40 19.40 37.90 2.32
264 265 3.701040 TCTCTTGCCCTCCAAATATTTGC 59.299 43.478 20.67 10.85 36.86 3.68
265 266 2.426738 TCTTGCCCTCCAAATATTTGCG 59.573 45.455 20.67 14.36 36.86 4.85
266 267 1.110442 TGCCCTCCAAATATTTGCGG 58.890 50.000 20.67 20.20 36.86 5.69
267 268 0.249447 GCCCTCCAAATATTTGCGGC 60.249 55.000 24.41 24.41 36.70 6.53
268 269 0.030638 CCCTCCAAATATTTGCGGCG 59.969 55.000 20.67 0.51 36.86 6.46
269 270 0.738389 CCTCCAAATATTTGCGGCGT 59.262 50.000 20.67 0.00 36.86 5.68
270 271 1.268539 CCTCCAAATATTTGCGGCGTC 60.269 52.381 20.67 0.91 36.86 5.19
271 272 0.736053 TCCAAATATTTGCGGCGTCC 59.264 50.000 20.67 0.00 36.86 4.79
284 285 4.457496 CGTCCGAGGTGGCTGCAT 62.457 66.667 0.50 0.00 37.80 3.96
285 286 2.900273 GTCCGAGGTGGCTGCATA 59.100 61.111 0.50 0.00 37.80 3.14
286 287 1.521681 GTCCGAGGTGGCTGCATAC 60.522 63.158 0.50 0.00 37.80 2.39
287 288 1.685765 TCCGAGGTGGCTGCATACT 60.686 57.895 0.50 0.00 37.80 2.12
288 289 1.522355 CCGAGGTGGCTGCATACTG 60.522 63.158 0.50 0.00 0.00 2.74
289 290 2.176273 CGAGGTGGCTGCATACTGC 61.176 63.158 0.50 0.00 45.29 4.40
306 307 3.618690 CTGCAAGTTTAGCTACTCCCT 57.381 47.619 0.00 0.00 0.00 4.20
307 308 3.944087 CTGCAAGTTTAGCTACTCCCTT 58.056 45.455 0.00 0.00 0.00 3.95
308 309 3.935828 CTGCAAGTTTAGCTACTCCCTTC 59.064 47.826 0.00 0.00 0.00 3.46
309 310 3.326588 TGCAAGTTTAGCTACTCCCTTCA 59.673 43.478 0.00 0.00 0.00 3.02
310 311 4.019321 TGCAAGTTTAGCTACTCCCTTCAT 60.019 41.667 0.00 0.00 0.00 2.57
311 312 4.944317 GCAAGTTTAGCTACTCCCTTCATT 59.056 41.667 0.00 0.00 0.00 2.57
312 313 5.416013 GCAAGTTTAGCTACTCCCTTCATTT 59.584 40.000 0.00 0.00 0.00 2.32
313 314 6.403746 GCAAGTTTAGCTACTCCCTTCATTTC 60.404 42.308 0.00 0.00 0.00 2.17
314 315 6.374417 AGTTTAGCTACTCCCTTCATTTCA 57.626 37.500 0.00 0.00 0.00 2.69
315 316 6.174049 AGTTTAGCTACTCCCTTCATTTCAC 58.826 40.000 0.00 0.00 0.00 3.18
316 317 5.755409 TTAGCTACTCCCTTCATTTCACA 57.245 39.130 0.00 0.00 0.00 3.58
317 318 4.640771 AGCTACTCCCTTCATTTCACAA 57.359 40.909 0.00 0.00 0.00 3.33
318 319 5.184892 AGCTACTCCCTTCATTTCACAAT 57.815 39.130 0.00 0.00 0.00 2.71
319 320 5.574188 AGCTACTCCCTTCATTTCACAATT 58.426 37.500 0.00 0.00 0.00 2.32
320 321 5.649831 AGCTACTCCCTTCATTTCACAATTC 59.350 40.000 0.00 0.00 0.00 2.17
321 322 5.649831 GCTACTCCCTTCATTTCACAATTCT 59.350 40.000 0.00 0.00 0.00 2.40
322 323 6.151817 GCTACTCCCTTCATTTCACAATTCTT 59.848 38.462 0.00 0.00 0.00 2.52
323 324 6.336842 ACTCCCTTCATTTCACAATTCTTG 57.663 37.500 0.00 0.00 0.00 3.02
324 325 5.835280 ACTCCCTTCATTTCACAATTCTTGT 59.165 36.000 0.00 0.00 46.75 3.16
325 326 6.015940 ACTCCCTTCATTTCACAATTCTTGTC 60.016 38.462 0.00 0.00 43.23 3.18
326 327 5.048782 TCCCTTCATTTCACAATTCTTGTCG 60.049 40.000 0.00 0.00 43.23 4.35
327 328 5.278463 CCCTTCATTTCACAATTCTTGTCGT 60.278 40.000 0.00 0.00 43.23 4.34
328 329 5.626543 CCTTCATTTCACAATTCTTGTCGTG 59.373 40.000 0.00 0.00 43.23 4.35
329 330 5.107109 TCATTTCACAATTCTTGTCGTGG 57.893 39.130 0.00 0.00 43.23 4.94
330 331 4.578516 TCATTTCACAATTCTTGTCGTGGT 59.421 37.500 0.00 0.00 43.23 4.16
331 332 4.974368 TTTCACAATTCTTGTCGTGGTT 57.026 36.364 0.00 0.00 43.23 3.67
332 333 4.974368 TTCACAATTCTTGTCGTGGTTT 57.026 36.364 0.00 0.00 43.23 3.27
333 334 4.974368 TCACAATTCTTGTCGTGGTTTT 57.026 36.364 0.00 0.00 43.23 2.43
334 335 6.438259 TTCACAATTCTTGTCGTGGTTTTA 57.562 33.333 0.00 0.00 43.23 1.52
335 336 6.055231 TCACAATTCTTGTCGTGGTTTTAG 57.945 37.500 0.00 0.00 43.23 1.85
344 345 8.659925 TCTTGTCGTGGTTTTAGTACAAAATA 57.340 30.769 0.00 0.00 0.00 1.40
352 353 9.888878 GTGGTTTTAGTACAAAATAAAGGACTC 57.111 33.333 0.00 0.00 0.00 3.36
372 373 3.819337 CTCTGATACAATGGAGGCCAATG 59.181 47.826 5.01 0.14 40.04 2.82
382 383 3.974719 TGGAGGCCAATGTAATTAGCAA 58.025 40.909 5.01 0.00 42.95 3.91
413 414 9.453572 AGAAGCTAAACAAATGATAATGACTCA 57.546 29.630 0.00 0.00 0.00 3.41
443 444 3.584834 GACACATTACATGCCCCAAAAC 58.415 45.455 0.00 0.00 0.00 2.43
638 673 1.152881 CATCCTTGGCTAGCCCCAC 60.153 63.158 30.81 6.52 33.82 4.61
659 697 1.221840 CTGGTCCAAGGTCCATCCG 59.778 63.158 5.55 0.00 41.99 4.18
783 823 2.909662 CCTTTGTCTTCTTCTCCCTCCT 59.090 50.000 0.00 0.00 0.00 3.69
786 826 1.273324 TGTCTTCTTCTCCCTCCTCCC 60.273 57.143 0.00 0.00 0.00 4.30
856 896 0.533755 AGCGCCATTTGCTAGCTAGG 60.534 55.000 22.10 12.85 41.87 3.02
857 897 1.510480 GCGCCATTTGCTAGCTAGGG 61.510 60.000 22.10 15.47 38.05 3.53
878 928 0.031178 GTGCCACCAAAACAGAGCTG 59.969 55.000 0.00 0.00 0.00 4.24
880 930 0.595095 GCCACCAAAACAGAGCTGAG 59.405 55.000 4.21 0.00 0.00 3.35
883 933 2.551459 CCACCAAAACAGAGCTGAGAAG 59.449 50.000 4.21 0.00 0.00 2.85
885 935 3.497640 CACCAAAACAGAGCTGAGAAGAG 59.502 47.826 4.21 0.00 0.00 2.85
901 954 5.465724 TGAGAAGAGTAAAGAAAAGTTCGCC 59.534 40.000 0.00 0.00 34.02 5.54
905 958 2.479275 AGTAAAGAAAAGTTCGCCGCTC 59.521 45.455 0.00 0.00 34.02 5.03
918 971 3.195698 CGCTCTTTGCTACGGGCC 61.196 66.667 0.00 0.00 40.92 5.80
929 982 0.899720 CTACGGGCCTGGTTAGTTGA 59.100 55.000 18.00 0.00 0.00 3.18
938 991 2.582687 CTGGTTAGTTGACTCGACGTC 58.417 52.381 5.18 5.18 43.14 4.34
947 1000 2.805353 CTCGACGTCGCTTGGTGG 60.805 66.667 32.19 11.80 39.60 4.61
1090 1148 1.431440 CTCGTCAGCTTCCTCCTCG 59.569 63.158 0.00 0.00 0.00 4.63
1240 1304 3.612247 ATGCCACGACCCACAGCTC 62.612 63.158 0.00 0.00 0.00 4.09
1296 1360 1.654137 GCGACTTGCGTTTGTGTGG 60.654 57.895 0.00 0.00 43.41 4.17
1723 1790 3.119708 GCAACTTCTGGACAACATCATCC 60.120 47.826 0.00 0.00 35.37 3.51
1806 1873 3.500222 GAGTCGTCCTCGTCCTCC 58.500 66.667 0.00 0.00 38.33 4.30
1807 1874 1.078285 GAGTCGTCCTCGTCCTCCT 60.078 63.158 0.00 0.00 38.33 3.69
1808 1875 1.078285 AGTCGTCCTCGTCCTCCTC 60.078 63.158 0.00 0.00 38.33 3.71
1809 1876 2.125229 TCGTCCTCGTCCTCCTCG 60.125 66.667 0.00 0.00 38.33 4.63
1818 1885 2.812609 TCCTCCTCGTCGTCGTCG 60.813 66.667 5.50 5.50 38.33 5.12
2043 2113 4.755614 AAGCGGCTCGTCGTCGTC 62.756 66.667 1.45 0.00 44.09 4.20
2056 2126 2.501261 TCGTCGTCGATCCCAATATCT 58.499 47.619 0.00 0.00 41.35 1.98
2088 2158 5.079689 TCATAACGAATGAGTAGTTGCCA 57.920 39.130 0.00 0.00 39.77 4.92
2131 2201 6.206634 TGCTTATATGTTAATTACTGCCCAGC 59.793 38.462 0.00 0.00 0.00 4.85
2191 2261 4.651962 AGAACAATTAGAGGGAGAGGTAGC 59.348 45.833 0.00 0.00 0.00 3.58
2219 2289 8.462016 AGAAAATAAGTGAAGACATGCATAACC 58.538 33.333 0.00 0.00 0.00 2.85
2224 2294 2.024414 GAAGACATGCATAACCACCCC 58.976 52.381 0.00 0.00 0.00 4.95
2231 2301 1.283613 TGCATAACCACCCCGAATTCT 59.716 47.619 3.52 0.00 0.00 2.40
2262 2332 7.513190 TTTTCATTTTGTCGTTCATTTTCGT 57.487 28.000 0.00 0.00 0.00 3.85
2263 2333 6.726035 TTCATTTTGTCGTTCATTTTCGTC 57.274 33.333 0.00 0.00 0.00 4.20
2264 2334 5.811588 TCATTTTGTCGTTCATTTTCGTCA 58.188 33.333 0.00 0.00 0.00 4.35
2294 2365 4.878397 CCTTCGGCAAGTCTAGATTTGATT 59.122 41.667 26.90 2.42 30.67 2.57
2300 2371 5.526846 GGCAAGTCTAGATTTGATTCCTCAG 59.473 44.000 26.90 2.67 31.68 3.35
2307 2378 4.440880 AGATTTGATTCCTCAGCTCTTCG 58.559 43.478 0.00 0.00 31.68 3.79
2308 2379 2.680312 TTGATTCCTCAGCTCTTCGG 57.320 50.000 0.00 0.00 31.68 4.30
2311 2382 2.167281 TGATTCCTCAGCTCTTCGGAAG 59.833 50.000 11.54 11.54 38.77 3.46
2321 2392 2.483714 GCTCTTCGGAAGGACATATGCA 60.484 50.000 17.19 0.00 0.00 3.96
2337 2431 1.451927 GCATGGGTGCGGAGATGAA 60.452 57.895 0.00 0.00 42.28 2.57
2370 2464 8.378115 TGGATAATGAAATGAAGGAAAATGGT 57.622 30.769 0.00 0.00 0.00 3.55
2378 2473 7.992033 TGAAATGAAGGAAAATGGTGATGTTTT 59.008 29.630 0.00 0.00 0.00 2.43
2392 2487 8.927675 TGGTGATGTTTTTATACATATACCCC 57.072 34.615 14.71 0.00 41.02 4.95
2459 2567 6.148811 ACACCGTTTTCTGTTATGGTTCATAG 59.851 38.462 0.00 0.00 31.31 2.23
2463 2571 7.015289 CGTTTTCTGTTATGGTTCATAGTGTG 58.985 38.462 0.00 0.00 0.00 3.82
2486 2594 2.113860 ACTCCGCCTAGTTACACGTA 57.886 50.000 0.00 0.00 0.00 3.57
2497 2605 6.459298 GCCTAGTTACACGTAGAGCATTTCTA 60.459 42.308 0.00 0.00 37.36 2.10
2498 2606 7.649973 CCTAGTTACACGTAGAGCATTTCTAT 58.350 38.462 0.00 0.00 40.42 1.98
2534 2642 6.823689 GGGTTTGACATAGAGCATTTCTAAGA 59.176 38.462 0.00 0.00 41.59 2.10
2536 2644 9.547753 GGTTTGACATAGAGCATTTCTAAGATA 57.452 33.333 0.00 0.00 41.59 1.98
2548 2656 8.574737 AGCATTTCTAAGATAATGAAAGCCATC 58.425 33.333 0.00 0.00 34.44 3.51
2554 2662 9.507329 TCTAAGATAATGAAAGCCATCATAACC 57.493 33.333 2.54 0.00 39.08 2.85
2568 2679 1.864711 CATAACCTTATCGCCCACACG 59.135 52.381 0.00 0.00 0.00 4.49
2575 2686 2.274232 TATCGCCCACACGAAGGTCG 62.274 60.000 0.00 0.00 46.59 4.79
2593 2704 0.524816 CGCAACATCTTGAGCATGGC 60.525 55.000 0.00 0.00 0.00 4.40
2599 2710 1.404391 CATCTTGAGCATGGCTGGTTC 59.596 52.381 0.00 0.00 39.88 3.62
2626 2737 6.116711 TGGGTAACAAAATGCTAGTACTGA 57.883 37.500 5.39 0.00 39.74 3.41
2627 2738 6.535540 TGGGTAACAAAATGCTAGTACTGAA 58.464 36.000 5.39 0.00 39.74 3.02
2629 2740 7.668052 TGGGTAACAAAATGCTAGTACTGAAAT 59.332 33.333 5.39 0.00 39.74 2.17
2630 2741 7.968405 GGGTAACAAAATGCTAGTACTGAAATG 59.032 37.037 5.39 0.00 39.74 2.32
2631 2742 8.726988 GGTAACAAAATGCTAGTACTGAAATGA 58.273 33.333 5.39 0.00 0.00 2.57
2704 3093 9.946165 AGTATTAACTACTGCTCAAAAACAAAC 57.054 29.630 0.00 0.00 39.28 2.93
2710 3099 7.547227 ACTACTGCTCAAAAACAAACTGAAAT 58.453 30.769 0.00 0.00 0.00 2.17
2736 3125 9.617523 TGAAAATTACATGATCTATCAGCAGAA 57.382 29.630 0.00 0.00 40.64 3.02
2765 3154 3.348119 GTCTTCTCAAATTCACCCTCCC 58.652 50.000 0.00 0.00 0.00 4.30
2766 3155 3.009584 GTCTTCTCAAATTCACCCTCCCT 59.990 47.826 0.00 0.00 0.00 4.20
2767 3156 3.657727 TCTTCTCAAATTCACCCTCCCTT 59.342 43.478 0.00 0.00 0.00 3.95
2768 3157 4.106341 TCTTCTCAAATTCACCCTCCCTTT 59.894 41.667 0.00 0.00 0.00 3.11
2769 3158 4.469469 TCTCAAATTCACCCTCCCTTTT 57.531 40.909 0.00 0.00 0.00 2.27
2798 3187 6.121776 TCTGGAAAGTGCCAATAAGAACTA 57.878 37.500 0.00 0.00 37.52 2.24
2833 3222 0.240145 CACGTCCTAGTCAACGCTGA 59.760 55.000 8.85 0.00 42.47 4.26
2837 3226 2.599082 CGTCCTAGTCAACGCTGATTTC 59.401 50.000 0.00 0.00 33.05 2.17
2871 3260 2.355513 CCTGCTGCCTTTCTCTGTGTAT 60.356 50.000 0.00 0.00 0.00 2.29
2883 3272 3.119955 TCTCTGTGTATGTGTCGCTGTAC 60.120 47.826 0.00 0.00 0.00 2.90
2889 3278 4.212636 GTGTATGTGTCGCTGTACCTTTTT 59.787 41.667 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.201384 GCTATAGCAAAAGTTCATCAAAAGTGC 60.201 37.037 20.01 0.00 41.59 4.40
1 2 7.274250 GGCTATAGCAAAAGTTCATCAAAAGTG 59.726 37.037 25.53 0.00 44.36 3.16
2 3 7.039784 TGGCTATAGCAAAAGTTCATCAAAAGT 60.040 33.333 25.53 0.00 44.36 2.66
3 4 7.315142 TGGCTATAGCAAAAGTTCATCAAAAG 58.685 34.615 25.53 0.00 44.36 2.27
4 5 7.225784 TGGCTATAGCAAAAGTTCATCAAAA 57.774 32.000 25.53 0.00 44.36 2.44
5 6 6.832520 TGGCTATAGCAAAAGTTCATCAAA 57.167 33.333 25.53 0.00 44.36 2.69
6 7 6.434028 ACTTGGCTATAGCAAAAGTTCATCAA 59.566 34.615 27.06 17.09 42.80 2.57
7 8 5.945784 ACTTGGCTATAGCAAAAGTTCATCA 59.054 36.000 27.06 12.11 42.80 3.07
8 9 6.094048 TCACTTGGCTATAGCAAAAGTTCATC 59.906 38.462 28.86 11.23 42.80 2.92
9 10 5.945784 TCACTTGGCTATAGCAAAAGTTCAT 59.054 36.000 28.86 14.35 42.80 2.57
10 11 5.312895 TCACTTGGCTATAGCAAAAGTTCA 58.687 37.500 28.86 20.44 42.80 3.18
11 12 5.880054 TCACTTGGCTATAGCAAAAGTTC 57.120 39.130 28.86 12.97 42.80 3.01
12 13 7.775093 TGATATCACTTGGCTATAGCAAAAGTT 59.225 33.333 28.86 21.91 42.80 2.66
13 14 7.282585 TGATATCACTTGGCTATAGCAAAAGT 58.717 34.615 27.06 27.06 44.75 2.66
14 15 7.734924 TGATATCACTTGGCTATAGCAAAAG 57.265 36.000 26.11 26.11 44.36 2.27
15 16 7.775093 AGTTGATATCACTTGGCTATAGCAAAA 59.225 33.333 25.53 17.31 44.36 2.44
16 17 7.227314 CAGTTGATATCACTTGGCTATAGCAAA 59.773 37.037 25.53 19.81 44.36 3.68
17 18 6.707608 CAGTTGATATCACTTGGCTATAGCAA 59.292 38.462 25.53 12.91 44.36 3.91
18 19 6.226052 CAGTTGATATCACTTGGCTATAGCA 58.774 40.000 25.53 9.64 44.36 3.49
19 20 5.121454 GCAGTTGATATCACTTGGCTATAGC 59.879 44.000 16.78 16.78 41.14 2.97
20 21 6.462500 AGCAGTTGATATCACTTGGCTATAG 58.538 40.000 4.48 0.00 0.00 1.31
21 22 6.425210 AGCAGTTGATATCACTTGGCTATA 57.575 37.500 4.48 0.00 0.00 1.31
22 23 5.301835 AGCAGTTGATATCACTTGGCTAT 57.698 39.130 4.48 0.00 0.00 2.97
23 24 4.760530 AGCAGTTGATATCACTTGGCTA 57.239 40.909 4.48 0.00 0.00 3.93
24 25 3.641434 AGCAGTTGATATCACTTGGCT 57.359 42.857 4.48 9.42 0.00 4.75
25 26 5.755813 CAATAGCAGTTGATATCACTTGGC 58.244 41.667 4.48 7.26 0.00 4.52
26 27 5.755813 GCAATAGCAGTTGATATCACTTGG 58.244 41.667 4.48 0.00 41.58 3.61
43 44 3.097877 TGACGGTCATAGCTGCAATAG 57.902 47.619 6.76 0.00 0.00 1.73
44 45 3.535280 TTGACGGTCATAGCTGCAATA 57.465 42.857 12.26 0.00 0.00 1.90
45 46 2.401583 TTGACGGTCATAGCTGCAAT 57.598 45.000 12.26 0.00 0.00 3.56
46 47 2.076100 CTTTGACGGTCATAGCTGCAA 58.924 47.619 12.26 0.41 0.00 4.08
47 48 1.675714 CCTTTGACGGTCATAGCTGCA 60.676 52.381 19.29 0.00 0.00 4.41
48 49 1.009829 CCTTTGACGGTCATAGCTGC 58.990 55.000 19.29 0.00 0.00 5.25
49 50 1.656652 CCCTTTGACGGTCATAGCTG 58.343 55.000 19.29 10.91 0.00 4.24
50 51 0.107654 GCCCTTTGACGGTCATAGCT 60.108 55.000 19.29 0.00 0.00 3.32
51 52 1.095807 GGCCCTTTGACGGTCATAGC 61.096 60.000 19.29 15.16 0.00 2.97
52 53 0.810031 CGGCCCTTTGACGGTCATAG 60.810 60.000 18.18 18.18 0.00 2.23
53 54 1.219664 CGGCCCTTTGACGGTCATA 59.780 57.895 12.26 6.38 0.00 2.15
54 55 2.046314 CGGCCCTTTGACGGTCAT 60.046 61.111 12.26 0.00 0.00 3.06
55 56 1.756408 TAACGGCCCTTTGACGGTCA 61.756 55.000 6.76 6.76 0.00 4.02
56 57 0.603439 TTAACGGCCCTTTGACGGTC 60.603 55.000 0.00 0.00 0.00 4.79
57 58 0.886043 GTTAACGGCCCTTTGACGGT 60.886 55.000 0.00 0.00 0.00 4.83
58 59 0.604511 AGTTAACGGCCCTTTGACGG 60.605 55.000 0.00 0.00 0.00 4.79
59 60 1.232119 AAGTTAACGGCCCTTTGACG 58.768 50.000 0.00 0.00 0.00 4.35
60 61 2.350102 CGAAAGTTAACGGCCCTTTGAC 60.350 50.000 8.46 3.96 0.00 3.18
61 62 1.874872 CGAAAGTTAACGGCCCTTTGA 59.125 47.619 8.46 0.00 0.00 2.69
62 63 1.664874 GCGAAAGTTAACGGCCCTTTG 60.665 52.381 8.46 3.58 0.00 2.77
63 64 0.594602 GCGAAAGTTAACGGCCCTTT 59.405 50.000 0.00 0.00 0.00 3.11
64 65 1.239296 GGCGAAAGTTAACGGCCCTT 61.239 55.000 16.98 0.00 46.41 3.95
65 66 1.673337 GGCGAAAGTTAACGGCCCT 60.673 57.895 16.98 0.00 46.41 5.19
66 67 2.872557 GGCGAAAGTTAACGGCCC 59.127 61.111 16.98 5.34 46.41 5.80
69 70 2.407026 GCAATTTGGCGAAAGTTAACGG 59.593 45.455 0.00 0.00 0.00 4.44
70 71 3.046390 TGCAATTTGGCGAAAGTTAACG 58.954 40.909 0.00 0.00 36.28 3.18
71 72 6.090129 TCTATGCAATTTGGCGAAAGTTAAC 58.910 36.000 0.00 0.00 36.28 2.01
72 73 6.260870 TCTATGCAATTTGGCGAAAGTTAA 57.739 33.333 0.00 0.00 36.28 2.01
73 74 5.888691 TCTATGCAATTTGGCGAAAGTTA 57.111 34.783 0.00 0.00 36.28 2.24
74 75 4.782019 TCTATGCAATTTGGCGAAAGTT 57.218 36.364 0.00 0.00 36.28 2.66
75 76 4.218417 ACTTCTATGCAATTTGGCGAAAGT 59.782 37.500 0.00 0.00 36.28 2.66
76 77 4.737054 ACTTCTATGCAATTTGGCGAAAG 58.263 39.130 0.00 0.00 36.28 2.62
77 78 4.671508 CGACTTCTATGCAATTTGGCGAAA 60.672 41.667 0.00 0.00 36.28 3.46
78 79 3.181511 CGACTTCTATGCAATTTGGCGAA 60.182 43.478 0.00 0.00 36.28 4.70
79 80 2.351418 CGACTTCTATGCAATTTGGCGA 59.649 45.455 0.00 0.00 36.28 5.54
80 81 2.539547 CCGACTTCTATGCAATTTGGCG 60.540 50.000 0.00 0.00 36.28 5.69
81 82 2.682856 TCCGACTTCTATGCAATTTGGC 59.317 45.455 0.00 0.00 0.00 4.52
82 83 4.191544 TCTCCGACTTCTATGCAATTTGG 58.808 43.478 0.00 0.00 0.00 3.28
83 84 5.801350 TTCTCCGACTTCTATGCAATTTG 57.199 39.130 0.00 0.00 0.00 2.32
84 85 5.940470 AGTTTCTCCGACTTCTATGCAATTT 59.060 36.000 0.00 0.00 0.00 1.82
85 86 5.491982 AGTTTCTCCGACTTCTATGCAATT 58.508 37.500 0.00 0.00 0.00 2.32
86 87 5.091261 AGTTTCTCCGACTTCTATGCAAT 57.909 39.130 0.00 0.00 0.00 3.56
87 88 4.537135 AGTTTCTCCGACTTCTATGCAA 57.463 40.909 0.00 0.00 0.00 4.08
88 89 4.537135 AAGTTTCTCCGACTTCTATGCA 57.463 40.909 0.00 0.00 32.04 3.96
89 90 4.504826 GCTAAGTTTCTCCGACTTCTATGC 59.495 45.833 0.00 0.00 38.28 3.14
90 91 4.735822 CGCTAAGTTTCTCCGACTTCTATG 59.264 45.833 0.00 0.00 38.28 2.23
91 92 4.734108 GCGCTAAGTTTCTCCGACTTCTAT 60.734 45.833 0.00 0.00 38.28 1.98
92 93 3.427233 GCGCTAAGTTTCTCCGACTTCTA 60.427 47.826 0.00 0.00 38.28 2.10
93 94 2.671632 GCGCTAAGTTTCTCCGACTTCT 60.672 50.000 0.00 0.00 38.28 2.85
94 95 1.654602 GCGCTAAGTTTCTCCGACTTC 59.345 52.381 0.00 0.00 38.28 3.01
95 96 1.672145 GGCGCTAAGTTTCTCCGACTT 60.672 52.381 7.64 0.00 40.28 3.01
96 97 0.108756 GGCGCTAAGTTTCTCCGACT 60.109 55.000 7.64 0.00 0.00 4.18
97 98 1.411493 CGGCGCTAAGTTTCTCCGAC 61.411 60.000 7.64 0.00 39.23 4.79
98 99 1.153901 CGGCGCTAAGTTTCTCCGA 60.154 57.895 7.64 0.00 39.23 4.55
99 100 2.799540 GCGGCGCTAAGTTTCTCCG 61.800 63.158 26.86 0.00 39.81 4.63
100 101 0.179119 TAGCGGCGCTAAGTTTCTCC 60.179 55.000 36.64 1.49 38.27 3.71
101 102 1.854227 ATAGCGGCGCTAAGTTTCTC 58.146 50.000 40.67 5.66 44.62 2.87
102 103 2.311124 AATAGCGGCGCTAAGTTTCT 57.689 45.000 40.67 23.43 44.62 2.52
103 104 2.350498 TGAAATAGCGGCGCTAAGTTTC 59.650 45.455 36.88 36.88 44.62 2.78
104 105 2.352388 TGAAATAGCGGCGCTAAGTTT 58.648 42.857 40.67 34.67 44.62 2.66
105 106 2.018542 TGAAATAGCGGCGCTAAGTT 57.981 45.000 40.67 34.48 44.62 2.66
106 107 2.018542 TTGAAATAGCGGCGCTAAGT 57.981 45.000 40.67 31.13 44.62 2.24
107 108 3.609103 ATTTGAAATAGCGGCGCTAAG 57.391 42.857 40.67 0.00 44.62 2.18
108 109 4.101942 CAAATTTGAAATAGCGGCGCTAA 58.898 39.130 40.67 27.45 44.62 3.09
109 110 3.690422 CAAATTTGAAATAGCGGCGCTA 58.310 40.909 39.52 39.52 45.55 4.26
110 111 2.529151 CAAATTTGAAATAGCGGCGCT 58.471 42.857 37.84 37.84 43.41 5.92
111 112 1.006079 GCAAATTTGAAATAGCGGCGC 60.006 47.619 26.86 26.86 0.00 6.53
112 113 2.529151 AGCAAATTTGAAATAGCGGCG 58.471 42.857 22.31 0.51 0.00 6.46
113 114 4.926860 AAAGCAAATTTGAAATAGCGGC 57.073 36.364 22.31 2.83 0.00 6.53
114 115 6.464895 TGAAAAGCAAATTTGAAATAGCGG 57.535 33.333 22.31 0.00 0.00 5.52
115 116 7.479291 CCATTGAAAAGCAAATTTGAAATAGCG 59.521 33.333 22.31 2.04 40.48 4.26
116 117 8.505625 TCCATTGAAAAGCAAATTTGAAATAGC 58.494 29.630 22.31 5.09 40.48 2.97
118 119 9.001542 CCTCCATTGAAAAGCAAATTTGAAATA 57.998 29.630 22.31 0.00 40.48 1.40
119 120 7.720515 TCCTCCATTGAAAAGCAAATTTGAAAT 59.279 29.630 22.31 3.85 40.48 2.17
120 121 7.052873 TCCTCCATTGAAAAGCAAATTTGAAA 58.947 30.769 22.31 5.96 40.48 2.69
121 122 6.590068 TCCTCCATTGAAAAGCAAATTTGAA 58.410 32.000 22.31 6.30 40.48 2.69
122 123 6.041865 TCTCCTCCATTGAAAAGCAAATTTGA 59.958 34.615 22.31 0.00 40.48 2.69
123 124 6.225318 TCTCCTCCATTGAAAAGCAAATTTG 58.775 36.000 14.03 14.03 40.48 2.32
124 125 6.423776 TCTCCTCCATTGAAAAGCAAATTT 57.576 33.333 0.00 0.00 40.48 1.82
125 126 6.423776 TTCTCCTCCATTGAAAAGCAAATT 57.576 33.333 0.00 0.00 40.48 1.82
126 127 6.423776 TTTCTCCTCCATTGAAAAGCAAAT 57.576 33.333 0.00 0.00 40.48 2.32
127 128 5.867903 TTTCTCCTCCATTGAAAAGCAAA 57.132 34.783 0.00 0.00 40.48 3.68
128 129 5.846203 CTTTTCTCCTCCATTGAAAAGCAA 58.154 37.500 12.40 0.00 44.91 3.91
129 130 5.458041 CTTTTCTCCTCCATTGAAAAGCA 57.542 39.130 12.40 0.00 44.91 3.91
132 133 5.835280 AGCTTCTTTTCTCCTCCATTGAAAA 59.165 36.000 0.00 0.00 37.35 2.29
133 134 5.388654 AGCTTCTTTTCTCCTCCATTGAAA 58.611 37.500 0.00 0.00 0.00 2.69
134 135 4.990526 AGCTTCTTTTCTCCTCCATTGAA 58.009 39.130 0.00 0.00 0.00 2.69
135 136 4.647564 AGCTTCTTTTCTCCTCCATTGA 57.352 40.909 0.00 0.00 0.00 2.57
136 137 4.522022 ACAAGCTTCTTTTCTCCTCCATTG 59.478 41.667 0.00 0.00 0.00 2.82
137 138 4.522022 CACAAGCTTCTTTTCTCCTCCATT 59.478 41.667 0.00 0.00 0.00 3.16
138 139 4.077822 CACAAGCTTCTTTTCTCCTCCAT 58.922 43.478 0.00 0.00 0.00 3.41
139 140 3.480470 CACAAGCTTCTTTTCTCCTCCA 58.520 45.455 0.00 0.00 0.00 3.86
140 141 2.227626 GCACAAGCTTCTTTTCTCCTCC 59.772 50.000 0.00 0.00 37.91 4.30
141 142 2.227626 GGCACAAGCTTCTTTTCTCCTC 59.772 50.000 0.00 0.00 41.70 3.71
142 143 2.234143 GGCACAAGCTTCTTTTCTCCT 58.766 47.619 0.00 0.00 41.70 3.69
143 144 1.956477 TGGCACAAGCTTCTTTTCTCC 59.044 47.619 0.00 0.00 41.70 3.71
144 145 2.620585 ACTGGCACAAGCTTCTTTTCTC 59.379 45.455 0.00 0.00 38.70 2.87
145 146 2.659428 ACTGGCACAAGCTTCTTTTCT 58.341 42.857 0.00 0.00 38.70 2.52
146 147 3.443099 AACTGGCACAAGCTTCTTTTC 57.557 42.857 0.00 0.00 38.70 2.29
147 148 3.893326 AAACTGGCACAAGCTTCTTTT 57.107 38.095 0.00 0.00 38.70 2.27
148 149 3.195396 TGAAAACTGGCACAAGCTTCTTT 59.805 39.130 0.00 0.00 38.70 2.52
149 150 2.760092 TGAAAACTGGCACAAGCTTCTT 59.240 40.909 0.00 0.00 38.70 2.52
150 151 2.378038 TGAAAACTGGCACAAGCTTCT 58.622 42.857 0.00 0.00 38.70 2.85
151 152 2.869233 TGAAAACTGGCACAAGCTTC 57.131 45.000 0.00 0.00 38.70 3.86
152 153 2.694628 TGATGAAAACTGGCACAAGCTT 59.305 40.909 0.00 0.00 38.70 3.74
153 154 2.309613 TGATGAAAACTGGCACAAGCT 58.690 42.857 0.00 0.00 38.70 3.74
154 155 2.798976 TGATGAAAACTGGCACAAGC 57.201 45.000 0.00 0.00 38.70 4.01
155 156 2.991190 GCATGATGAAAACTGGCACAAG 59.009 45.455 0.00 0.00 38.70 3.16
156 157 2.607526 CGCATGATGAAAACTGGCACAA 60.608 45.455 0.00 0.00 38.70 3.33
157 158 1.068402 CGCATGATGAAAACTGGCACA 60.068 47.619 0.00 0.00 0.00 4.57
158 159 1.621107 CGCATGATGAAAACTGGCAC 58.379 50.000 0.00 0.00 0.00 5.01
159 160 0.527113 CCGCATGATGAAAACTGGCA 59.473 50.000 0.00 0.00 0.00 4.92
160 161 0.527565 ACCGCATGATGAAAACTGGC 59.472 50.000 0.00 0.00 0.00 4.85
161 162 1.135315 CCACCGCATGATGAAAACTGG 60.135 52.381 0.00 0.00 0.00 4.00
162 163 1.733389 GCCACCGCATGATGAAAACTG 60.733 52.381 0.00 0.00 34.03 3.16
163 164 0.527565 GCCACCGCATGATGAAAACT 59.472 50.000 0.00 0.00 34.03 2.66
164 165 0.458370 GGCCACCGCATGATGAAAAC 60.458 55.000 0.00 0.00 36.38 2.43
165 166 1.603236 GGGCCACCGCATGATGAAAA 61.603 55.000 4.39 0.00 36.38 2.29
166 167 2.051518 GGGCCACCGCATGATGAAA 61.052 57.895 4.39 0.00 36.38 2.69
167 168 2.440065 GGGCCACCGCATGATGAA 60.440 61.111 4.39 0.00 36.38 2.57
168 169 2.778055 TTTGGGCCACCGCATGATGA 62.778 55.000 5.23 0.00 40.75 2.92
169 170 1.886253 TTTTGGGCCACCGCATGATG 61.886 55.000 5.23 0.00 40.75 3.07
170 171 1.606885 CTTTTGGGCCACCGCATGAT 61.607 55.000 5.23 0.00 40.75 2.45
171 172 2.203552 TTTTGGGCCACCGCATGA 60.204 55.556 5.23 0.00 40.75 3.07
172 173 2.262292 CTTTTGGGCCACCGCATG 59.738 61.111 5.23 0.00 40.75 4.06
173 174 2.779742 TAGCTTTTGGGCCACCGCAT 62.780 55.000 5.23 2.27 40.75 4.73
174 175 2.985539 TTAGCTTTTGGGCCACCGCA 62.986 55.000 5.23 0.00 40.75 5.69
175 176 2.272447 TTAGCTTTTGGGCCACCGC 61.272 57.895 5.23 9.46 40.75 5.68
176 177 1.584495 GTTAGCTTTTGGGCCACCG 59.416 57.895 5.23 0.00 40.75 4.94
177 178 0.830023 TGGTTAGCTTTTGGGCCACC 60.830 55.000 5.23 1.29 36.89 4.61
178 179 1.266178 ATGGTTAGCTTTTGGGCCAC 58.734 50.000 5.23 0.00 0.00 5.01
179 180 2.909504 TATGGTTAGCTTTTGGGCCA 57.090 45.000 0.00 0.00 0.00 5.36
180 181 4.161377 TGATTTATGGTTAGCTTTTGGGCC 59.839 41.667 0.00 0.00 0.00 5.80
181 182 5.337578 TGATTTATGGTTAGCTTTTGGGC 57.662 39.130 0.00 0.00 0.00 5.36
182 183 5.163416 CCCTGATTTATGGTTAGCTTTTGGG 60.163 44.000 0.00 0.00 0.00 4.12
183 184 5.682212 GCCCTGATTTATGGTTAGCTTTTGG 60.682 44.000 0.00 0.00 0.00 3.28
184 185 5.351458 GCCCTGATTTATGGTTAGCTTTTG 58.649 41.667 0.00 0.00 0.00 2.44
185 186 4.097892 CGCCCTGATTTATGGTTAGCTTTT 59.902 41.667 0.00 0.00 0.00 2.27
186 187 3.632145 CGCCCTGATTTATGGTTAGCTTT 59.368 43.478 0.00 0.00 0.00 3.51
187 188 3.118038 TCGCCCTGATTTATGGTTAGCTT 60.118 43.478 0.00 0.00 0.00 3.74
188 189 2.438021 TCGCCCTGATTTATGGTTAGCT 59.562 45.455 0.00 0.00 0.00 3.32
189 190 2.808543 CTCGCCCTGATTTATGGTTAGC 59.191 50.000 0.00 0.00 0.00 3.09
190 191 2.808543 GCTCGCCCTGATTTATGGTTAG 59.191 50.000 0.00 0.00 0.00 2.34
191 192 2.171659 TGCTCGCCCTGATTTATGGTTA 59.828 45.455 0.00 0.00 0.00 2.85
192 193 1.064758 TGCTCGCCCTGATTTATGGTT 60.065 47.619 0.00 0.00 0.00 3.67
193 194 0.546122 TGCTCGCCCTGATTTATGGT 59.454 50.000 0.00 0.00 0.00 3.55
194 195 0.947244 GTGCTCGCCCTGATTTATGG 59.053 55.000 0.00 0.00 0.00 2.74
195 196 1.667236 TGTGCTCGCCCTGATTTATG 58.333 50.000 0.00 0.00 0.00 1.90
196 197 2.645838 ATGTGCTCGCCCTGATTTAT 57.354 45.000 0.00 0.00 0.00 1.40
197 198 2.698274 TCTATGTGCTCGCCCTGATTTA 59.302 45.455 0.00 0.00 0.00 1.40
198 199 1.486310 TCTATGTGCTCGCCCTGATTT 59.514 47.619 0.00 0.00 0.00 2.17
199 200 1.123077 TCTATGTGCTCGCCCTGATT 58.877 50.000 0.00 0.00 0.00 2.57
200 201 1.123077 TTCTATGTGCTCGCCCTGAT 58.877 50.000 0.00 0.00 0.00 2.90
201 202 0.901827 TTTCTATGTGCTCGCCCTGA 59.098 50.000 0.00 0.00 0.00 3.86
202 203 1.009829 GTTTCTATGTGCTCGCCCTG 58.990 55.000 0.00 0.00 0.00 4.45
203 204 0.107654 GGTTTCTATGTGCTCGCCCT 60.108 55.000 0.00 0.00 0.00 5.19
204 205 0.392461 TGGTTTCTATGTGCTCGCCC 60.392 55.000 0.00 0.00 0.00 6.13
205 206 1.668419 ATGGTTTCTATGTGCTCGCC 58.332 50.000 0.00 0.00 0.00 5.54
206 207 3.364366 GCATATGGTTTCTATGTGCTCGC 60.364 47.826 4.56 0.00 38.92 5.03
207 208 3.187227 GGCATATGGTTTCTATGTGCTCG 59.813 47.826 4.56 0.00 40.92 5.03
208 209 4.392940 AGGCATATGGTTTCTATGTGCTC 58.607 43.478 4.56 5.52 40.92 4.26
209 210 4.443978 AGGCATATGGTTTCTATGTGCT 57.556 40.909 4.56 0.43 40.92 4.40
210 211 5.355350 GGATAGGCATATGGTTTCTATGTGC 59.645 44.000 4.56 6.35 40.56 4.57
211 212 6.475504 TGGATAGGCATATGGTTTCTATGTG 58.524 40.000 4.56 0.00 0.00 3.21
212 213 6.702449 TGGATAGGCATATGGTTTCTATGT 57.298 37.500 4.56 0.00 0.00 2.29
213 214 7.284034 GGAATGGATAGGCATATGGTTTCTATG 59.716 40.741 4.56 0.00 0.00 2.23
214 215 7.349598 GGAATGGATAGGCATATGGTTTCTAT 58.650 38.462 4.56 0.00 0.00 1.98
215 216 6.297010 GGGAATGGATAGGCATATGGTTTCTA 60.297 42.308 4.56 0.00 0.00 2.10
216 217 5.517299 GGGAATGGATAGGCATATGGTTTCT 60.517 44.000 4.56 0.00 0.00 2.52
217 218 4.706962 GGGAATGGATAGGCATATGGTTTC 59.293 45.833 4.56 0.00 0.00 2.78
218 219 4.510930 GGGGAATGGATAGGCATATGGTTT 60.511 45.833 4.56 0.00 0.00 3.27
219 220 3.011708 GGGGAATGGATAGGCATATGGTT 59.988 47.826 4.56 0.00 0.00 3.67
220 221 2.582636 GGGGAATGGATAGGCATATGGT 59.417 50.000 4.56 0.00 0.00 3.55
221 222 2.854967 AGGGGAATGGATAGGCATATGG 59.145 50.000 4.56 0.00 0.00 2.74
222 223 3.784763 AGAGGGGAATGGATAGGCATATG 59.215 47.826 0.00 0.00 0.00 1.78
223 224 4.043596 GAGAGGGGAATGGATAGGCATAT 58.956 47.826 0.00 0.00 0.00 1.78
224 225 3.079689 AGAGAGGGGAATGGATAGGCATA 59.920 47.826 0.00 0.00 0.00 3.14
225 226 2.157880 AGAGAGGGGAATGGATAGGCAT 60.158 50.000 0.00 0.00 0.00 4.40
226 227 1.224120 AGAGAGGGGAATGGATAGGCA 59.776 52.381 0.00 0.00 0.00 4.75
227 228 2.037385 AGAGAGGGGAATGGATAGGC 57.963 55.000 0.00 0.00 0.00 3.93
228 229 2.039613 GCAAGAGAGGGGAATGGATAGG 59.960 54.545 0.00 0.00 0.00 2.57
229 230 2.039613 GGCAAGAGAGGGGAATGGATAG 59.960 54.545 0.00 0.00 0.00 2.08
230 231 2.057922 GGCAAGAGAGGGGAATGGATA 58.942 52.381 0.00 0.00 0.00 2.59
231 232 0.849417 GGCAAGAGAGGGGAATGGAT 59.151 55.000 0.00 0.00 0.00 3.41
232 233 1.281925 GGGCAAGAGAGGGGAATGGA 61.282 60.000 0.00 0.00 0.00 3.41
233 234 1.228510 GGGCAAGAGAGGGGAATGG 59.771 63.158 0.00 0.00 0.00 3.16
234 235 0.182299 GAGGGCAAGAGAGGGGAATG 59.818 60.000 0.00 0.00 0.00 2.67
235 236 0.990818 GGAGGGCAAGAGAGGGGAAT 60.991 60.000 0.00 0.00 0.00 3.01
236 237 1.616628 GGAGGGCAAGAGAGGGGAA 60.617 63.158 0.00 0.00 0.00 3.97
237 238 2.041265 GGAGGGCAAGAGAGGGGA 59.959 66.667 0.00 0.00 0.00 4.81
238 239 1.500783 TTTGGAGGGCAAGAGAGGGG 61.501 60.000 0.00 0.00 0.00 4.79
239 240 0.627986 ATTTGGAGGGCAAGAGAGGG 59.372 55.000 0.00 0.00 0.00 4.30
240 241 3.872459 ATATTTGGAGGGCAAGAGAGG 57.128 47.619 0.00 0.00 0.00 3.69
241 242 4.202090 GCAAATATTTGGAGGGCAAGAGAG 60.202 45.833 25.61 0.07 38.57 3.20
242 243 3.701040 GCAAATATTTGGAGGGCAAGAGA 59.299 43.478 25.61 0.00 38.57 3.10
243 244 3.489738 CGCAAATATTTGGAGGGCAAGAG 60.490 47.826 25.61 0.66 38.57 2.85
244 245 2.426738 CGCAAATATTTGGAGGGCAAGA 59.573 45.455 25.61 0.00 38.57 3.02
245 246 2.481795 CCGCAAATATTTGGAGGGCAAG 60.482 50.000 25.61 5.50 38.57 4.01
246 247 1.480137 CCGCAAATATTTGGAGGGCAA 59.520 47.619 25.61 0.00 38.57 4.52
247 248 1.110442 CCGCAAATATTTGGAGGGCA 58.890 50.000 25.61 0.00 38.57 5.36
248 249 0.249447 GCCGCAAATATTTGGAGGGC 60.249 55.000 25.61 17.90 38.57 5.19
249 250 0.030638 CGCCGCAAATATTTGGAGGG 59.969 55.000 25.61 11.10 38.57 4.30
250 251 0.738389 ACGCCGCAAATATTTGGAGG 59.262 50.000 25.61 18.40 38.57 4.30
251 252 1.268539 GGACGCCGCAAATATTTGGAG 60.269 52.381 25.61 15.94 38.57 3.86
252 253 0.736053 GGACGCCGCAAATATTTGGA 59.264 50.000 25.61 0.00 38.57 3.53
253 254 0.591236 CGGACGCCGCAAATATTTGG 60.591 55.000 25.61 16.63 41.17 3.28
254 255 2.853457 CGGACGCCGCAAATATTTG 58.147 52.632 21.54 21.54 41.17 2.32
267 268 3.076258 TATGCAGCCACCTCGGACG 62.076 63.158 0.00 0.00 36.56 4.79
268 269 1.521681 GTATGCAGCCACCTCGGAC 60.522 63.158 0.00 0.00 36.56 4.79
269 270 1.685765 AGTATGCAGCCACCTCGGA 60.686 57.895 0.00 0.00 36.56 4.55
270 271 1.522355 CAGTATGCAGCCACCTCGG 60.522 63.158 0.00 0.00 38.11 4.63
271 272 4.115279 CAGTATGCAGCCACCTCG 57.885 61.111 0.00 0.00 0.00 4.63
282 283 4.811557 GGGAGTAGCTAAACTTGCAGTATG 59.188 45.833 0.00 0.00 40.87 2.39
283 284 4.717280 AGGGAGTAGCTAAACTTGCAGTAT 59.283 41.667 0.00 0.00 0.00 2.12
284 285 4.094476 AGGGAGTAGCTAAACTTGCAGTA 58.906 43.478 0.00 0.00 0.00 2.74
285 286 2.907042 AGGGAGTAGCTAAACTTGCAGT 59.093 45.455 0.00 0.00 0.00 4.40
286 287 3.618690 AGGGAGTAGCTAAACTTGCAG 57.381 47.619 0.00 0.00 0.00 4.41
287 288 3.326588 TGAAGGGAGTAGCTAAACTTGCA 59.673 43.478 0.00 0.00 0.00 4.08
288 289 3.939066 TGAAGGGAGTAGCTAAACTTGC 58.061 45.455 0.00 0.00 0.00 4.01
289 290 6.655003 TGAAATGAAGGGAGTAGCTAAACTTG 59.345 38.462 0.00 0.00 0.00 3.16
290 291 6.655425 GTGAAATGAAGGGAGTAGCTAAACTT 59.345 38.462 0.00 0.00 0.00 2.66
291 292 6.174049 GTGAAATGAAGGGAGTAGCTAAACT 58.826 40.000 0.00 0.00 0.00 2.66
292 293 5.938125 TGTGAAATGAAGGGAGTAGCTAAAC 59.062 40.000 0.00 0.00 0.00 2.01
293 294 6.121776 TGTGAAATGAAGGGAGTAGCTAAA 57.878 37.500 0.00 0.00 0.00 1.85
294 295 5.755409 TGTGAAATGAAGGGAGTAGCTAA 57.245 39.130 0.00 0.00 0.00 3.09
295 296 5.755409 TTGTGAAATGAAGGGAGTAGCTA 57.245 39.130 0.00 0.00 0.00 3.32
296 297 4.640771 TTGTGAAATGAAGGGAGTAGCT 57.359 40.909 0.00 0.00 0.00 3.32
297 298 5.649831 AGAATTGTGAAATGAAGGGAGTAGC 59.350 40.000 0.00 0.00 0.00 3.58
298 299 7.533426 CAAGAATTGTGAAATGAAGGGAGTAG 58.467 38.462 0.00 0.00 42.34 2.57
299 300 7.452880 CAAGAATTGTGAAATGAAGGGAGTA 57.547 36.000 0.00 0.00 42.34 2.59
300 301 6.336842 CAAGAATTGTGAAATGAAGGGAGT 57.663 37.500 0.00 0.00 42.34 3.85
316 317 7.556733 TTGTACTAAAACCACGACAAGAATT 57.443 32.000 0.00 0.00 0.00 2.17
317 318 7.556733 TTTGTACTAAAACCACGACAAGAAT 57.443 32.000 0.00 0.00 0.00 2.40
318 319 6.981762 TTTGTACTAAAACCACGACAAGAA 57.018 33.333 0.00 0.00 0.00 2.52
319 320 6.981762 TTTTGTACTAAAACCACGACAAGA 57.018 33.333 0.00 0.00 0.00 3.02
320 321 9.719279 TTTATTTTGTACTAAAACCACGACAAG 57.281 29.630 6.57 0.00 0.00 3.16
321 322 9.719279 CTTTATTTTGTACTAAAACCACGACAA 57.281 29.630 6.57 0.00 0.00 3.18
322 323 8.344098 CCTTTATTTTGTACTAAAACCACGACA 58.656 33.333 6.57 0.00 0.00 4.35
323 324 8.558700 TCCTTTATTTTGTACTAAAACCACGAC 58.441 33.333 6.57 0.00 0.00 4.34
324 325 8.558700 GTCCTTTATTTTGTACTAAAACCACGA 58.441 33.333 6.57 0.00 0.00 4.35
325 326 8.562052 AGTCCTTTATTTTGTACTAAAACCACG 58.438 33.333 6.57 0.00 0.00 4.94
326 327 9.888878 GAGTCCTTTATTTTGTACTAAAACCAC 57.111 33.333 6.57 0.00 0.00 4.16
327 328 9.856162 AGAGTCCTTTATTTTGTACTAAAACCA 57.144 29.630 6.57 0.00 0.00 3.67
344 345 4.384647 GCCTCCATTGTATCAGAGTCCTTT 60.385 45.833 0.00 0.00 0.00 3.11
352 353 3.559069 ACATTGGCCTCCATTGTATCAG 58.441 45.455 3.32 0.00 43.47 2.90
443 444 8.748412 TCAATCAAGGGTTTTCAATGGTATTAG 58.252 33.333 0.00 0.00 0.00 1.73
638 673 1.486726 GGATGGACCTTGGACCAGTAG 59.513 57.143 15.22 0.00 39.62 2.57
702 742 5.163540 ACTGGCGACTAATAACTAGAAGTGG 60.164 44.000 0.00 0.00 0.00 4.00
704 744 6.152323 TCAACTGGCGACTAATAACTAGAAGT 59.848 38.462 0.00 0.00 0.00 3.01
705 745 6.561614 TCAACTGGCGACTAATAACTAGAAG 58.438 40.000 0.00 0.00 0.00 2.85
706 746 6.519679 TCAACTGGCGACTAATAACTAGAA 57.480 37.500 0.00 0.00 0.00 2.10
708 748 5.692204 CCATCAACTGGCGACTAATAACTAG 59.308 44.000 0.00 0.00 38.47 2.57
709 749 5.597806 CCATCAACTGGCGACTAATAACTA 58.402 41.667 0.00 0.00 38.47 2.24
710 750 4.442706 CCATCAACTGGCGACTAATAACT 58.557 43.478 0.00 0.00 38.47 2.24
756 796 1.587043 GAAGAAGACAAAGGGGCCGC 61.587 60.000 12.88 12.88 0.00 6.53
878 928 5.388578 CGGCGAACTTTTCTTTACTCTTCTC 60.389 44.000 0.00 0.00 0.00 2.87
880 930 4.699303 CGGCGAACTTTTCTTTACTCTTC 58.301 43.478 0.00 0.00 0.00 2.87
883 933 2.479275 AGCGGCGAACTTTTCTTTACTC 59.521 45.455 12.98 0.00 0.00 2.59
885 935 2.479275 AGAGCGGCGAACTTTTCTTTAC 59.521 45.455 12.98 0.00 0.00 2.01
905 958 0.035820 TAACCAGGCCCGTAGCAAAG 60.036 55.000 0.00 0.00 46.50 2.77
915 968 0.606604 TCGAGTCAACTAACCAGGCC 59.393 55.000 0.00 0.00 0.00 5.19
918 971 2.701073 ACGTCGAGTCAACTAACCAG 57.299 50.000 0.00 0.00 0.00 4.00
929 982 2.050351 CACCAAGCGACGTCGAGT 60.050 61.111 39.74 25.86 43.02 4.18
938 991 1.851658 CAAGGAAAAACCACCAAGCG 58.148 50.000 0.00 0.00 42.04 4.68
947 1000 3.064820 TCACTTCACTCGCAAGGAAAAAC 59.935 43.478 0.00 0.00 38.47 2.43
1163 1221 2.027751 CCGGCGAAGTAGCTAGCC 59.972 66.667 12.13 10.91 45.67 3.93
1240 1304 3.563808 TGGTCAATCAAAGAAAGGTCGTG 59.436 43.478 0.00 0.00 0.00 4.35
1296 1360 2.358737 CACCGGAGCAACCCTGTC 60.359 66.667 9.46 0.00 34.64 3.51
1429 1493 2.511600 GGCGATCTTGGACCACCG 60.512 66.667 0.00 0.00 39.42 4.94
1602 1669 4.116328 TTCTGCTCGGGCGAGTCG 62.116 66.667 8.54 8.54 43.70 4.18
1647 1714 3.997064 CTCTTCGGCGCCTGACTGG 62.997 68.421 26.68 7.77 39.35 4.00
1656 1723 0.108615 AGAACATGTCCTCTTCGGCG 60.109 55.000 0.00 0.00 0.00 6.46
1723 1790 3.545481 GACGACGTCGCATGGCAG 61.545 66.667 35.92 9.56 44.43 4.85
1806 1873 4.517703 GAGGCCGACGACGACGAG 62.518 72.222 20.63 11.66 42.66 4.18
1842 1912 3.235481 TCCTCGAAACCACCGCCA 61.235 61.111 0.00 0.00 0.00 5.69
1873 1943 1.227764 CCGGCCACTCCATGATCTG 60.228 63.158 2.24 0.00 34.01 2.90
2067 2137 5.741425 CATGGCAACTACTCATTCGTTATG 58.259 41.667 0.00 0.00 34.40 1.90
2088 2158 1.887242 ACGCAATCGCATACGGCAT 60.887 52.632 0.00 0.00 45.17 4.40
2113 2183 5.245977 ACTTTTGCTGGGCAGTAATTAACAT 59.754 36.000 0.00 0.00 40.61 2.71
2131 2201 0.729140 GCACCGCCGATGAACTTTTG 60.729 55.000 0.00 0.00 0.00 2.44
2191 2261 9.844790 TTATGCATGTCTTCACTTATTTTCTTG 57.155 29.630 10.16 0.00 0.00 3.02
2241 2311 5.811588 TGACGAAAATGAACGACAAAATGA 58.188 33.333 0.00 0.00 32.56 2.57
2242 2312 6.674005 ATGACGAAAATGAACGACAAAATG 57.326 33.333 0.00 0.00 37.63 2.32
2243 2313 6.086241 CGAATGACGAAAATGAACGACAAAAT 59.914 34.615 0.00 0.00 45.77 1.82
2244 2314 5.394032 CGAATGACGAAAATGAACGACAAAA 59.606 36.000 0.00 0.00 45.77 2.44
2294 2365 0.039764 TCCTTCCGAAGAGCTGAGGA 59.960 55.000 9.87 0.00 0.00 3.71
2300 2371 2.139118 GCATATGTCCTTCCGAAGAGC 58.861 52.381 9.87 2.79 0.00 4.09
2307 2378 2.233271 CACCCATGCATATGTCCTTCC 58.767 52.381 0.00 0.00 32.21 3.46
2321 2392 0.107017 CCTTTCATCTCCGCACCCAT 60.107 55.000 0.00 0.00 0.00 4.00
2329 2400 7.456725 TCATTATCCAGATTCCTTTCATCTCC 58.543 38.462 0.00 0.00 0.00 3.71
2337 2431 8.284435 TCCTTCATTTCATTATCCAGATTCCTT 58.716 33.333 0.00 0.00 0.00 3.36
2370 2464 9.848710 TTTCGGGGTATATGTATAAAAACATCA 57.151 29.630 0.00 0.00 40.52 3.07
2378 2473 8.952278 GCATTTCATTTCGGGGTATATGTATAA 58.048 33.333 0.00 0.00 0.00 0.98
2390 2485 5.473162 TCCATATACTGCATTTCATTTCGGG 59.527 40.000 0.00 0.00 0.00 5.14
2392 2487 7.194607 ACTCCATATACTGCATTTCATTTCG 57.805 36.000 0.00 0.00 0.00 3.46
2432 2540 3.547746 ACCATAACAGAAAACGGTGTGT 58.452 40.909 0.00 0.00 0.00 3.72
2459 2567 2.738013 ACTAGGCGGAGTAAACACAC 57.262 50.000 0.00 0.00 0.00 3.82
2463 2571 3.174375 CGTGTAACTAGGCGGAGTAAAC 58.826 50.000 0.00 0.00 31.75 2.01
2486 2594 5.358160 CCGAAAAAGGGAATAGAAATGCTCT 59.642 40.000 0.00 0.00 38.28 4.09
2534 2642 8.950210 CGATAAGGTTATGATGGCTTTCATTAT 58.050 33.333 8.44 2.59 37.51 1.28
2536 2644 6.294176 GCGATAAGGTTATGATGGCTTTCATT 60.294 38.462 8.44 0.00 37.51 2.57
2548 2656 1.864711 CGTGTGGGCGATAAGGTTATG 59.135 52.381 0.00 0.00 0.00 1.90
2554 2662 0.108329 ACCTTCGTGTGGGCGATAAG 60.108 55.000 0.00 0.00 40.76 1.73
2568 2679 1.129437 GCTCAAGATGTTGCGACCTTC 59.871 52.381 0.45 0.00 33.23 3.46
2569 2680 1.160137 GCTCAAGATGTTGCGACCTT 58.840 50.000 0.45 0.00 33.23 3.50
2575 2686 0.815734 AGCCATGCTCAAGATGTTGC 59.184 50.000 0.00 0.00 30.62 4.17
2593 2704 2.536761 TTGTTACCCAGTCGAACCAG 57.463 50.000 0.00 0.00 0.00 4.00
2599 2710 4.000988 ACTAGCATTTTGTTACCCAGTCG 58.999 43.478 0.00 0.00 0.00 4.18
2644 2755 9.301153 GGACGCAGAATGTTATTAATTTTCATT 57.699 29.630 0.00 3.08 39.31 2.57
2645 2756 8.465999 TGGACGCAGAATGTTATTAATTTTCAT 58.534 29.630 0.00 0.00 39.31 2.57
2649 2760 9.301153 GAAATGGACGCAGAATGTTATTAATTT 57.699 29.630 0.00 0.00 39.31 1.82
2650 2761 8.465999 TGAAATGGACGCAGAATGTTATTAATT 58.534 29.630 0.00 0.00 39.31 1.40
2710 3099 9.617523 TTCTGCTGATAGATCATGTAATTTTCA 57.382 29.630 0.00 0.00 36.02 2.69
2736 3125 5.532779 GGTGAATTTGAGAAGACCTTTCTGT 59.467 40.000 0.00 0.00 29.98 3.41
2833 3222 8.389366 AGGCAGCAGGAGAATATTATTAGAAAT 58.611 33.333 0.00 0.00 0.00 2.17
2837 3226 7.882271 AGAAAGGCAGCAGGAGAATATTATTAG 59.118 37.037 0.00 0.00 0.00 1.73
2851 3240 2.462456 TACACAGAGAAAGGCAGCAG 57.538 50.000 0.00 0.00 0.00 4.24
2871 3260 2.158871 AGGAAAAAGGTACAGCGACACA 60.159 45.455 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.