Multiple sequence alignment - TraesCS5A01G205100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G205100 chr5A 100.000 5394 0 0 1 5394 414781969 414776576 0.000000e+00 9961.0
1 TraesCS5A01G205100 chr5A 98.148 54 1 0 563 616 414781354 414781301 1.600000e-15 95.3
2 TraesCS5A01G205100 chr5A 98.148 54 1 0 616 669 414781407 414781354 1.600000e-15 95.3
3 TraesCS5A01G205100 chr5D 95.462 3107 108 15 2299 5391 319318425 319321512 0.000000e+00 4926.0
4 TraesCS5A01G205100 chr5D 90.838 1539 54 39 621 2102 319316742 319318250 0.000000e+00 1980.0
5 TraesCS5A01G205100 chr5D 85.645 620 54 17 1 592 319316154 319316766 2.130000e-173 619.0
6 TraesCS5A01G205100 chr5D 95.349 43 2 0 192 234 474747269 474747227 9.690000e-08 69.4
7 TraesCS5A01G205100 chr5B 93.979 2973 135 19 2234 5190 369613613 369616557 0.000000e+00 4458.0
8 TraesCS5A01G205100 chr5B 89.385 1545 74 36 616 2102 369612020 369613532 0.000000e+00 1862.0
9 TraesCS5A01G205100 chr5B 88.281 384 30 11 235 605 369611681 369612062 3.830000e-121 446.0
10 TraesCS5A01G205100 chr5B 92.040 201 13 2 5191 5391 369616715 369616912 4.110000e-71 279.0
11 TraesCS5A01G205100 chr2D 91.111 45 4 0 1564 1608 644375532 644375488 1.620000e-05 62.1
12 TraesCS5A01G205100 chr2B 97.222 36 1 0 1564 1599 791471289 791471324 1.620000e-05 62.1
13 TraesCS5A01G205100 chr2A 91.111 45 4 0 1564 1608 769501867 769501823 1.620000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G205100 chr5A 414776576 414781969 5393 True 3383.866667 9961 98.765333 1 5394 3 chr5A.!!$R1 5393
1 TraesCS5A01G205100 chr5D 319316154 319321512 5358 False 2508.333333 4926 90.648333 1 5391 3 chr5D.!!$F1 5390
2 TraesCS5A01G205100 chr5B 369611681 369616912 5231 False 1761.250000 4458 90.921250 235 5391 4 chr5B.!!$F1 5156


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 404 0.036388 TCCCGCAGATGAAGGTTGTC 60.036 55.0 0.0 0.0 0.00 3.18 F
392 414 0.390472 GAAGGTTGTCTCTCCTGCGG 60.390 60.0 0.0 0.0 33.97 5.69 F
432 454 0.525761 AATGTGTTTCCCGATTGCCG 59.474 50.0 0.0 0.0 38.18 5.69 F
1542 1646 0.535328 TCAACGACATTTCCGGGCAA 60.535 50.0 0.0 0.0 0.00 4.52 F
2394 2581 0.676466 TGACAAGCATACCCTTGCCG 60.676 55.0 2.1 0.0 44.66 5.69 F
2951 3149 0.398318 GACACTGGGACTTGAGCCTT 59.602 55.0 0.0 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 2423 1.987770 GAAGTTCGGTTGCGATTCGTA 59.012 47.619 8.03 0.0 0.00 3.43 R
2293 2452 4.584638 TTGGATTATTACTGTGCCCACT 57.415 40.909 0.00 0.0 0.00 4.00 R
2394 2581 1.461127 GTGAGCGGTTGTCTGTCATTC 59.539 52.381 0.00 0.0 0.00 2.67 R
2932 3130 0.398318 AAGGCTCAAGTCCCAGTGTC 59.602 55.000 0.00 0.0 0.00 3.67 R
3325 3523 0.541764 TTGACATTGGGGTCCTTGCC 60.542 55.000 0.00 0.0 36.97 4.52 R
4635 4836 0.250510 TTGCATGGCGACCTACAACA 60.251 50.000 0.00 0.0 0.00 3.33 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.402056 AAGAAAACCGAAGAGACTGACA 57.598 40.909 0.00 0.00 0.00 3.58
165 166 2.439761 CGCGTCTGCAGCTACAGTG 61.440 63.158 13.69 8.86 42.97 3.66
174 175 0.101399 CAGCTACAGTGCTAGACCGG 59.899 60.000 0.00 0.00 41.98 5.28
219 220 4.218578 CGGAGCTCTGCCTCGCAT 62.219 66.667 14.64 0.00 38.13 4.73
317 337 4.941609 TGCGAGAGGAGAAATGCC 57.058 55.556 0.00 0.00 0.00 4.40
318 338 1.982430 TGCGAGAGGAGAAATGCCA 59.018 52.632 0.00 0.00 0.00 4.92
382 404 0.036388 TCCCGCAGATGAAGGTTGTC 60.036 55.000 0.00 0.00 0.00 3.18
392 414 0.390472 GAAGGTTGTCTCTCCTGCGG 60.390 60.000 0.00 0.00 33.97 5.69
432 454 0.525761 AATGTGTTTCCCGATTGCCG 59.474 50.000 0.00 0.00 38.18 5.69
433 455 1.933115 ATGTGTTTCCCGATTGCCGC 61.933 55.000 0.00 0.00 36.84 6.53
463 491 1.673808 GACGATGCCCCTCCGTAGTT 61.674 60.000 0.00 0.00 36.60 2.24
464 492 1.227263 CGATGCCCCTCCGTAGTTG 60.227 63.158 0.00 0.00 0.00 3.16
503 535 1.059369 CTTCGAACGAATGCCAGCG 59.941 57.895 9.97 0.00 33.28 5.18
505 537 3.864686 CGAACGAATGCCAGCGGG 61.865 66.667 0.00 0.00 37.18 6.13
568 600 1.103803 TAGGCCACGAACTAGCTCAG 58.896 55.000 5.01 0.00 0.00 3.35
569 601 1.811679 GGCCACGAACTAGCTCAGC 60.812 63.158 0.00 0.00 0.00 4.26
573 605 1.468908 CCACGAACTAGCTCAGCTCAG 60.469 57.143 0.00 1.65 40.44 3.35
600 632 0.602562 CCCGTCGTTAACCCTGTGTA 59.397 55.000 0.00 0.00 0.00 2.90
605 637 3.914364 CGTCGTTAACCCTGTGTAACTAC 59.086 47.826 0.00 0.00 38.04 2.73
606 638 3.914364 GTCGTTAACCCTGTGTAACTACG 59.086 47.826 0.00 0.00 38.04 3.51
607 639 3.818210 TCGTTAACCCTGTGTAACTACGA 59.182 43.478 0.00 0.00 38.04 3.43
608 640 3.914364 CGTTAACCCTGTGTAACTACGAC 59.086 47.826 0.00 0.00 38.04 4.34
609 641 4.237724 GTTAACCCTGTGTAACTACGACC 58.762 47.826 0.00 0.00 38.04 4.79
610 642 2.299326 ACCCTGTGTAACTACGACCT 57.701 50.000 0.00 0.00 38.04 3.85
611 643 1.891150 ACCCTGTGTAACTACGACCTG 59.109 52.381 0.00 0.00 38.04 4.00
612 644 1.203994 CCCTGTGTAACTACGACCTGG 59.796 57.143 0.00 0.00 38.04 4.45
613 645 1.891150 CCTGTGTAACTACGACCTGGT 59.109 52.381 0.00 0.00 38.04 4.00
614 646 3.084039 CCTGTGTAACTACGACCTGGTA 58.916 50.000 0.00 0.00 38.04 3.25
615 647 3.507233 CCTGTGTAACTACGACCTGGTAA 59.493 47.826 0.00 0.00 38.04 2.85
616 648 4.380233 CCTGTGTAACTACGACCTGGTAAG 60.380 50.000 0.00 0.00 38.04 2.34
617 649 3.057315 TGTGTAACTACGACCTGGTAAGC 60.057 47.826 0.00 0.00 38.04 3.09
618 650 3.192212 GTGTAACTACGACCTGGTAAGCT 59.808 47.826 0.00 0.00 0.00 3.74
619 651 3.441572 TGTAACTACGACCTGGTAAGCTC 59.558 47.826 0.00 0.00 0.00 4.09
630 662 3.007398 CCTGGTAAGCTCAGTTCAGTTCT 59.993 47.826 0.00 0.00 0.00 3.01
645 677 2.985139 CAGTTCTCTTCCCGTCGTTAAC 59.015 50.000 0.00 0.00 0.00 2.01
646 678 2.029560 AGTTCTCTTCCCGTCGTTAACC 60.030 50.000 0.00 0.00 0.00 2.85
647 679 0.890683 TCTCTTCCCGTCGTTAACCC 59.109 55.000 0.00 0.00 0.00 4.11
675 711 7.495934 GTGTAACTACGACCTGGTAATACTAGA 59.504 40.741 5.30 0.00 0.00 2.43
683 719 4.282195 ACCTGGTAATACTAGATGCTCTGC 59.718 45.833 5.30 0.00 0.00 4.26
689 725 1.006337 CTAGATGCTCTGCCGCTCC 60.006 63.158 0.00 0.00 0.00 4.70
1047 1096 4.367450 TCAGAAATTTTCTTGTTTGCGGG 58.633 39.130 8.95 0.00 38.11 6.13
1059 1108 2.884012 TGTTTGCGGGCATCATATAAGG 59.116 45.455 0.00 0.00 0.00 2.69
1065 1114 4.009675 GCGGGCATCATATAAGGAATCAA 58.990 43.478 0.00 0.00 0.00 2.57
1458 1562 1.673329 GGGCTCGAGTTCAAGAACCTC 60.673 57.143 15.13 6.00 42.06 3.85
1542 1646 0.535328 TCAACGACATTTCCGGGCAA 60.535 50.000 0.00 0.00 0.00 4.52
1728 1832 8.752766 ATGTTGCATTTTCATTACAAGAAGAG 57.247 30.769 0.00 0.00 0.00 2.85
1748 1882 4.102649 GAGACAAAAAGAACAAACGGTGG 58.897 43.478 0.00 0.00 0.00 4.61
1764 1898 2.932614 CGGTGGAGTTTCTTATGCTCTG 59.067 50.000 0.00 0.00 0.00 3.35
1991 2126 5.512232 CCCTAATTCTCCCTACTCAAGCATC 60.512 48.000 0.00 0.00 0.00 3.91
2058 2193 5.738783 GCTTTGCCACATTCTGAACCTTAAA 60.739 40.000 0.00 0.00 0.00 1.52
2076 2211 8.757982 ACCTTAAATTGATCACATAAGCATCT 57.242 30.769 0.00 0.00 0.00 2.90
2081 2216 7.670009 AATTGATCACATAAGCATCTCTAGC 57.330 36.000 0.00 0.00 0.00 3.42
2084 2219 4.230314 TCACATAAGCATCTCTAGCGAC 57.770 45.455 0.00 0.00 37.01 5.19
2113 2256 5.559148 AGTTCAGAACTCTCATGTTTCCT 57.441 39.130 10.27 0.00 37.02 3.36
2114 2257 6.672266 AGTTCAGAACTCTCATGTTTCCTA 57.328 37.500 10.27 0.00 37.02 2.94
2136 2279 8.956426 TCCTAATTTATTGTTTGACTAGCAAGG 58.044 33.333 0.00 0.00 37.87 3.61
2137 2280 8.956426 CCTAATTTATTGTTTGACTAGCAAGGA 58.044 33.333 0.00 0.00 37.87 3.36
2138 2281 9.994432 CTAATTTATTGTTTGACTAGCAAGGAG 57.006 33.333 0.00 0.00 37.87 3.69
2139 2282 8.409358 AATTTATTGTTTGACTAGCAAGGAGT 57.591 30.769 0.00 0.00 37.87 3.85
2140 2283 6.801539 TTATTGTTTGACTAGCAAGGAGTG 57.198 37.500 0.00 0.00 37.87 3.51
2148 2291 3.649986 GCAAGGAGTGCGTGCGTT 61.650 61.111 6.82 0.00 45.10 4.84
2149 2292 2.249309 CAAGGAGTGCGTGCGTTG 59.751 61.111 0.00 0.00 0.00 4.10
2150 2293 3.649986 AAGGAGTGCGTGCGTTGC 61.650 61.111 0.00 0.00 0.00 4.17
2151 2294 4.609018 AGGAGTGCGTGCGTTGCT 62.609 61.111 0.00 0.00 0.00 3.91
2152 2295 2.709125 AAGGAGTGCGTGCGTTGCTA 62.709 55.000 0.00 0.00 0.00 3.49
2153 2296 2.470286 GAGTGCGTGCGTTGCTAC 59.530 61.111 0.00 0.00 0.00 3.58
2170 2313 7.631915 GTTGCTACGAACCACAATAAAATTT 57.368 32.000 0.00 0.00 0.00 1.82
2171 2314 7.498225 GTTGCTACGAACCACAATAAAATTTG 58.502 34.615 0.00 0.00 0.00 2.32
2172 2315 6.740110 TGCTACGAACCACAATAAAATTTGT 58.260 32.000 0.00 0.00 40.39 2.83
2173 2316 7.203910 TGCTACGAACCACAATAAAATTTGTT 58.796 30.769 0.00 0.00 37.73 2.83
2174 2317 7.380065 TGCTACGAACCACAATAAAATTTGTTC 59.620 33.333 0.00 0.00 37.73 3.18
2175 2318 7.380065 GCTACGAACCACAATAAAATTTGTTCA 59.620 33.333 12.84 0.00 37.73 3.18
2176 2319 9.239002 CTACGAACCACAATAAAATTTGTTCAA 57.761 29.630 12.84 3.37 37.73 2.69
2177 2320 8.655651 ACGAACCACAATAAAATTTGTTCAAT 57.344 26.923 12.84 1.89 37.73 2.57
2178 2321 9.103861 ACGAACCACAATAAAATTTGTTCAATT 57.896 25.926 12.84 0.00 37.73 2.32
2183 2326 9.771915 CCACAATAAAATTTGTTCAATTATGGC 57.228 29.630 0.00 0.00 37.73 4.40
2190 2333 8.907222 AAATTTGTTCAATTATGGCTCAAAGT 57.093 26.923 0.00 0.00 33.60 2.66
2191 2334 8.907222 AATTTGTTCAATTATGGCTCAAAGTT 57.093 26.923 0.00 0.00 32.90 2.66
2192 2335 8.907222 ATTTGTTCAATTATGGCTCAAAGTTT 57.093 26.923 0.00 0.00 30.86 2.66
2193 2336 7.712264 TTGTTCAATTATGGCTCAAAGTTTG 57.288 32.000 9.44 9.44 0.00 2.93
2194 2337 6.815089 TGTTCAATTATGGCTCAAAGTTTGT 58.185 32.000 15.08 0.00 0.00 2.83
2195 2338 7.271511 TGTTCAATTATGGCTCAAAGTTTGTT 58.728 30.769 15.08 0.00 0.00 2.83
2196 2339 8.417106 TGTTCAATTATGGCTCAAAGTTTGTTA 58.583 29.630 15.08 0.00 0.00 2.41
2197 2340 9.255304 GTTCAATTATGGCTCAAAGTTTGTTAA 57.745 29.630 15.08 7.52 0.00 2.01
2198 2341 9.474920 TTCAATTATGGCTCAAAGTTTGTTAAG 57.525 29.630 15.08 6.93 0.00 1.85
2199 2342 8.637986 TCAATTATGGCTCAAAGTTTGTTAAGT 58.362 29.630 15.08 3.73 0.00 2.24
2200 2343 9.906660 CAATTATGGCTCAAAGTTTGTTAAGTA 57.093 29.630 15.08 2.88 0.00 2.24
2205 2348 7.430441 TGGCTCAAAGTTTGTTAAGTAATTCC 58.570 34.615 15.08 3.30 0.00 3.01
2206 2349 7.068839 TGGCTCAAAGTTTGTTAAGTAATTCCA 59.931 33.333 15.08 5.52 0.00 3.53
2207 2350 7.923878 GGCTCAAAGTTTGTTAAGTAATTCCAA 59.076 33.333 15.08 0.00 0.00 3.53
2208 2351 9.308318 GCTCAAAGTTTGTTAAGTAATTCCAAA 57.692 29.630 15.08 0.00 0.00 3.28
2229 2372 9.699410 TCCAAAATCATGTTAGATTGTAATCCT 57.301 29.630 1.16 0.00 38.21 3.24
2230 2373 9.740239 CCAAAATCATGTTAGATTGTAATCCTG 57.260 33.333 1.16 0.00 38.21 3.86
2252 2410 2.801063 GCAAATATGCGATGCAACTGT 58.199 42.857 0.00 0.00 43.62 3.55
2264 2423 3.981071 TGCAACTGTCCAATAGTAGCT 57.019 42.857 0.00 0.00 0.00 3.32
2293 2452 2.806244 GCAACCGAACTTCAGAAGCTTA 59.194 45.455 10.33 0.00 0.00 3.09
2294 2453 3.120511 GCAACCGAACTTCAGAAGCTTAG 60.121 47.826 10.33 0.00 0.00 2.18
2295 2454 4.058817 CAACCGAACTTCAGAAGCTTAGT 58.941 43.478 10.33 0.00 0.00 2.24
2296 2455 3.654414 ACCGAACTTCAGAAGCTTAGTG 58.346 45.455 10.33 0.00 0.00 2.74
2297 2456 2.996621 CCGAACTTCAGAAGCTTAGTGG 59.003 50.000 10.33 0.65 0.00 4.00
2298 2457 2.996621 CGAACTTCAGAAGCTTAGTGGG 59.003 50.000 10.33 0.41 0.00 4.61
2300 2459 1.699634 ACTTCAGAAGCTTAGTGGGCA 59.300 47.619 10.33 0.00 0.00 5.36
2301 2460 2.079925 CTTCAGAAGCTTAGTGGGCAC 58.920 52.381 0.00 0.00 0.00 5.01
2303 2462 1.002430 TCAGAAGCTTAGTGGGCACAG 59.998 52.381 0.00 0.00 0.00 3.66
2312 2499 4.515567 GCTTAGTGGGCACAGTAATAATCC 59.484 45.833 16.50 0.66 40.65 3.01
2350 2537 5.646360 CCACCGGAACTACATGAAAAATAGT 59.354 40.000 9.46 0.00 0.00 2.12
2351 2538 6.150474 CCACCGGAACTACATGAAAAATAGTT 59.850 38.462 9.46 2.24 40.89 2.24
2394 2581 0.676466 TGACAAGCATACCCTTGCCG 60.676 55.000 2.10 0.00 44.66 5.69
2507 2694 5.046448 AGACATCATCCATAAGCCATCTCTC 60.046 44.000 0.00 0.00 0.00 3.20
2508 2695 4.845225 ACATCATCCATAAGCCATCTCTCT 59.155 41.667 0.00 0.00 0.00 3.10
2636 2823 4.785301 TCCATCAACCATCTTTCAGGATC 58.215 43.478 0.00 0.00 0.00 3.36
2648 2835 3.834489 TTCAGGATCCAGATGCTTCTC 57.166 47.619 15.82 0.00 37.39 2.87
2692 2887 4.781934 AGGTAGTATTCCATTTCTGGTGC 58.218 43.478 0.00 0.00 43.61 5.01
2716 2911 4.080526 TCTCAGGCCTGTTAATAACTTCCC 60.081 45.833 31.58 2.31 0.00 3.97
2737 2934 4.381505 CCCATTGTGGCTGTTAATGGTTAC 60.382 45.833 12.61 0.00 45.92 2.50
2738 2935 4.219507 CCATTGTGGCTGTTAATGGTTACA 59.780 41.667 0.00 0.00 43.61 2.41
2740 2937 9.414163 CCCATTGTGGCTGTTAATGGTTACATT 62.414 40.741 12.61 0.00 45.92 2.71
2741 2938 5.384063 TGTGGCTGTTAATGGTTACATTG 57.616 39.130 3.39 0.00 46.37 2.82
2783 2980 9.781834 GCACTATGCTATATACTCTTCTAACTG 57.218 37.037 0.00 0.00 40.96 3.16
2881 3079 2.363795 CGGCCAGTACCTGAGGGA 60.364 66.667 2.38 0.00 32.44 4.20
2896 3094 1.138661 GAGGGAGAGAACAGCATGGAG 59.861 57.143 0.00 0.00 43.62 3.86
2951 3149 0.398318 GACACTGGGACTTGAGCCTT 59.602 55.000 0.00 0.00 0.00 4.35
3199 3397 4.943705 AGAAAAATACAGACACCGATGCAT 59.056 37.500 0.00 0.00 0.00 3.96
3200 3398 4.882671 AAAATACAGACACCGATGCATC 57.117 40.909 17.10 17.10 0.00 3.91
3220 3418 1.298859 CTGCAAACTCGGGCTACCAC 61.299 60.000 0.00 0.00 36.13 4.16
3325 3523 1.444553 GACTCCAGCTCGAACACCG 60.445 63.158 0.00 0.00 40.25 4.94
3391 3589 1.361668 CGCACAGGTCAATTCCTCCG 61.362 60.000 0.00 0.00 35.37 4.63
3721 3919 2.591571 TCTCCTCGAATGATGCAGTG 57.408 50.000 0.00 0.00 0.00 3.66
3724 3922 0.745486 CCTCGAATGATGCAGTGCCA 60.745 55.000 13.72 4.38 0.00 4.92
3739 3937 2.170166 GTGCCAACATTCATCCAGGAA 58.830 47.619 0.00 0.00 0.00 3.36
3793 3991 2.795175 CATACCGTGCTTCGACCTAT 57.205 50.000 3.69 0.00 42.86 2.57
3877 4075 3.503363 TGATCACAAAGTTCATGCTCCAC 59.497 43.478 0.00 0.00 0.00 4.02
3919 4117 0.173481 TCTGGATCGTCCTCTTTGCG 59.827 55.000 5.77 0.00 37.46 4.85
3958 4156 1.590932 CCTATGTGATGCTGGTGAGC 58.409 55.000 0.00 0.00 46.44 4.26
4009 4207 4.698496 GTCGTGATTGCAACGACG 57.302 55.556 22.44 21.54 44.87 5.12
4033 4231 1.078848 CTTCTTCCTCACCTGCGGG 60.079 63.158 11.02 11.02 38.88 6.13
4060 4258 0.391130 TGAAGCGGAACAAGATCCCG 60.391 55.000 3.27 3.27 45.51 5.14
4139 4337 0.111266 CGTCAACGAGTTCAAAGGCG 60.111 55.000 0.00 0.00 43.02 5.52
4153 4351 3.518068 GGCGGCCATTGCTACACC 61.518 66.667 15.62 0.00 37.74 4.16
4160 4358 1.240641 CCATTGCTACACCGGCACAA 61.241 55.000 0.00 0.00 39.55 3.33
4186 4384 0.409876 AGCTGTCACCAGGACCTCTA 59.590 55.000 0.00 0.00 46.38 2.43
4200 4398 5.188751 CAGGACCTCTAGGAGAAATCAAGTT 59.811 44.000 2.23 0.00 38.94 2.66
4201 4399 5.188751 AGGACCTCTAGGAGAAATCAAGTTG 59.811 44.000 2.23 0.00 38.94 3.16
4279 4477 0.254178 ATGTGCTCACCTCCATGGAC 59.746 55.000 11.44 0.00 39.71 4.02
4363 4561 3.181470 GGCTCTTCTTCTATGTGGTCCTC 60.181 52.174 0.00 0.00 0.00 3.71
4400 4598 7.440856 CCAAGAATGAGAGGAAGTAAATAGCTC 59.559 40.741 0.00 0.00 0.00 4.09
4453 4654 5.803461 CCATATCTCTTTGTGTGCATTTGTG 59.197 40.000 0.00 0.00 0.00 3.33
4474 4675 7.444629 TGTGATCTTTCTCATTCTCTTTTGG 57.555 36.000 0.00 0.00 0.00 3.28
4559 4760 2.443887 TGCCTTCAAAAGCATCAAGC 57.556 45.000 0.00 0.00 46.19 4.01
4654 4855 0.250510 TGTTGTAGGTCGCCATGCAA 60.251 50.000 0.00 0.00 0.00 4.08
4677 4878 3.515104 TCATGCAGGAAGTCATACTGTGA 59.485 43.478 0.00 0.00 34.79 3.58
4933 5134 4.574013 AGATCGAATGAGGAATGTTGAAGC 59.426 41.667 0.00 0.00 0.00 3.86
4940 5141 7.439356 CGAATGAGGAATGTTGAAGCTATTAGA 59.561 37.037 0.00 0.00 0.00 2.10
4946 5147 9.247861 AGGAATGTTGAAGCTATTAGATTTTGT 57.752 29.630 0.00 0.00 0.00 2.83
4947 5148 9.294030 GGAATGTTGAAGCTATTAGATTTTGTG 57.706 33.333 0.00 0.00 0.00 3.33
4994 5195 4.280174 GGTAGAACAAGGTACAGACTCACA 59.720 45.833 0.00 0.00 0.00 3.58
4995 5196 4.592485 AGAACAAGGTACAGACTCACAG 57.408 45.455 0.00 0.00 0.00 3.66
4996 5197 3.961408 AGAACAAGGTACAGACTCACAGT 59.039 43.478 0.00 0.00 0.00 3.55
5001 5202 5.472820 ACAAGGTACAGACTCACAGTACTAC 59.527 44.000 0.00 0.00 40.02 2.73
5052 5254 6.040842 ACAGAAAGCTAAAAGAATCCTGCAAA 59.959 34.615 0.00 0.00 0.00 3.68
5158 5360 0.880441 GTGTATGTGCATGCACCACA 59.120 50.000 40.01 36.67 44.95 4.17
5159 5361 0.880441 TGTATGTGCATGCACCACAC 59.120 50.000 40.01 32.62 45.00 3.82
5288 5649 7.044181 AGTTGAGTCCATATGAGTACAACATG 58.956 38.462 23.41 0.00 37.15 3.21
5303 5664 7.272978 AGTACAACATGGGAGTAACATGATAC 58.727 38.462 11.87 1.46 46.60 2.24
5304 5665 6.061022 ACAACATGGGAGTAACATGATACA 57.939 37.500 14.73 0.00 46.60 2.29
5391 5752 5.324409 ACAACCTTATCAATCTCTTTGCCA 58.676 37.500 0.00 0.00 35.16 4.92
5392 5753 5.954150 ACAACCTTATCAATCTCTTTGCCAT 59.046 36.000 0.00 0.00 35.16 4.40
5393 5754 6.438425 ACAACCTTATCAATCTCTTTGCCATT 59.562 34.615 0.00 0.00 35.16 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
219 220 2.614481 CCAAGAGCTGTTTACCGCCTAA 60.614 50.000 0.00 0.00 0.00 2.69
226 227 1.541147 TGCATGCCAAGAGCTGTTTAC 59.459 47.619 16.68 0.00 44.23 2.01
292 295 3.408501 CTCCTCTCGCAGGTCGCAG 62.409 68.421 0.63 0.00 43.95 5.18
293 296 3.443925 CTCCTCTCGCAGGTCGCA 61.444 66.667 0.63 0.00 43.95 5.10
297 300 0.107945 GCATTTCTCCTCTCGCAGGT 60.108 55.000 0.63 0.00 43.95 4.00
317 337 0.528017 TCTAGCCGCAGTCTTGTCTG 59.472 55.000 0.00 0.00 38.35 3.51
318 338 0.814457 CTCTAGCCGCAGTCTTGTCT 59.186 55.000 0.00 0.00 0.00 3.41
359 379 0.181350 ACCTTCATCTGCGGGAATCC 59.819 55.000 0.00 0.00 0.00 3.01
392 414 1.643832 CAGCTTATTTCCTCGCGGC 59.356 57.895 6.13 0.00 0.00 6.53
432 454 4.511443 ATCGTCGTCGTCGTCGGC 62.511 66.667 18.80 9.16 45.17 5.54
433 455 2.643790 CATCGTCGTCGTCGTCGG 60.644 66.667 18.80 3.36 45.17 4.79
448 476 0.325860 TACCAACTACGGAGGGGCAT 60.326 55.000 7.49 0.00 0.00 4.40
449 477 1.078891 TACCAACTACGGAGGGGCA 59.921 57.895 7.49 0.00 0.00 5.36
450 478 1.519246 GTACCAACTACGGAGGGGC 59.481 63.158 7.49 0.00 0.00 5.80
451 479 1.811860 CGTACCAACTACGGAGGGG 59.188 63.158 0.00 2.28 43.95 4.79
463 491 1.174783 GAGTCTTGAGGAGCGTACCA 58.825 55.000 3.22 0.00 0.00 3.25
464 492 1.133407 CTGAGTCTTGAGGAGCGTACC 59.867 57.143 0.00 0.00 0.00 3.34
505 537 1.696832 GATCTGCCGCCGAGTGTTTC 61.697 60.000 0.00 0.00 0.00 2.78
568 600 0.456995 CGACGGGAAGAGAACTGAGC 60.457 60.000 0.00 0.00 0.00 4.26
569 601 0.882474 ACGACGGGAAGAGAACTGAG 59.118 55.000 0.00 0.00 0.00 3.35
573 605 2.332104 GGTTAACGACGGGAAGAGAAC 58.668 52.381 0.00 0.00 0.00 3.01
606 638 2.300437 ACTGAACTGAGCTTACCAGGTC 59.700 50.000 11.14 11.14 45.89 3.85
607 639 2.330216 ACTGAACTGAGCTTACCAGGT 58.670 47.619 0.00 0.00 36.03 4.00
608 640 3.007398 AGAACTGAACTGAGCTTACCAGG 59.993 47.826 5.94 0.00 36.03 4.45
609 641 4.021544 AGAGAACTGAACTGAGCTTACCAG 60.022 45.833 0.00 0.00 37.64 4.00
610 642 3.898123 AGAGAACTGAACTGAGCTTACCA 59.102 43.478 0.00 0.00 0.00 3.25
611 643 4.529109 AGAGAACTGAACTGAGCTTACC 57.471 45.455 0.00 0.00 0.00 2.85
612 644 4.926832 GGAAGAGAACTGAACTGAGCTTAC 59.073 45.833 0.00 0.00 0.00 2.34
613 645 4.021016 GGGAAGAGAACTGAACTGAGCTTA 60.021 45.833 0.00 0.00 0.00 3.09
614 646 3.244387 GGGAAGAGAACTGAACTGAGCTT 60.244 47.826 0.00 0.00 0.00 3.74
615 647 2.301583 GGGAAGAGAACTGAACTGAGCT 59.698 50.000 0.00 0.00 0.00 4.09
616 648 2.694213 GGGAAGAGAACTGAACTGAGC 58.306 52.381 0.00 0.00 0.00 4.26
617 649 2.297597 ACGGGAAGAGAACTGAACTGAG 59.702 50.000 0.00 0.00 0.00 3.35
618 650 2.296471 GACGGGAAGAGAACTGAACTGA 59.704 50.000 0.00 0.00 0.00 3.41
619 651 2.678324 GACGGGAAGAGAACTGAACTG 58.322 52.381 0.00 0.00 0.00 3.16
630 662 0.604578 CAGGGTTAACGACGGGAAGA 59.395 55.000 0.00 0.00 0.00 2.87
645 677 1.203994 CCAGGTCGTAGTTACACAGGG 59.796 57.143 0.00 0.00 0.00 4.45
646 678 1.891150 ACCAGGTCGTAGTTACACAGG 59.109 52.381 0.00 0.00 0.00 4.00
647 679 4.771590 TTACCAGGTCGTAGTTACACAG 57.228 45.455 0.00 0.00 0.00 3.66
675 711 2.032860 AATACGGAGCGGCAGAGCAT 62.033 55.000 1.45 0.00 40.15 3.79
683 719 0.870307 CAACGGAGAATACGGAGCGG 60.870 60.000 0.00 0.00 35.23 5.52
689 725 1.444836 TTTGGGCAACGGAGAATACG 58.555 50.000 0.00 0.00 37.60 3.06
817 854 1.676967 CCTGTGCTTCTCTTGGGGC 60.677 63.158 0.00 0.00 0.00 5.80
818 855 1.676967 GCCTGTGCTTCTCTTGGGG 60.677 63.158 0.00 0.00 33.53 4.96
909 958 2.268076 CCTTGGTTTCGCAGGTGGG 61.268 63.158 0.00 0.00 0.00 4.61
1032 1081 1.410517 TGATGCCCGCAAACAAGAAAA 59.589 42.857 0.00 0.00 0.00 2.29
1047 1096 4.095483 CCCGCTTGATTCCTTATATGATGC 59.905 45.833 0.00 0.00 0.00 3.91
1059 1108 2.472909 CCTTCGCCCCGCTTGATTC 61.473 63.158 0.00 0.00 0.00 2.52
1440 1544 2.601804 GAGAGGTTCTTGAACTCGAGC 58.398 52.381 13.61 0.00 36.40 5.03
1458 1562 3.443037 CTTCTTGATGACGCTGTAGGAG 58.557 50.000 0.00 0.00 0.00 3.69
1620 1724 2.825264 CTCCCCTTGGCGATCCTC 59.175 66.667 0.00 0.00 0.00 3.71
1680 1784 3.572584 ACCATCGAGTCGAGTGTTAAAC 58.427 45.455 21.36 0.00 39.91 2.01
1728 1832 4.099380 TCCACCGTTTGTTCTTTTTGTC 57.901 40.909 0.00 0.00 0.00 3.18
1748 1882 7.172361 AGTTTCAGTTCAGAGCATAAGAAACTC 59.828 37.037 15.10 0.00 46.23 3.01
1764 1898 4.214332 GGTGACCTGATCAAGTTTCAGTTC 59.786 45.833 0.00 0.71 39.72 3.01
2017 2152 4.143052 GCAAAGCAGTGCATAAATTGAACC 60.143 41.667 19.20 0.00 44.29 3.62
2058 2193 5.868258 CGCTAGAGATGCTTATGTGATCAAT 59.132 40.000 0.00 0.00 0.00 2.57
2076 2211 6.598457 AGTTCTGAACTAGTATTGTCGCTAGA 59.402 38.462 20.85 0.00 40.69 2.43
2079 2214 5.416326 AGAGTTCTGAACTAGTATTGTCGCT 59.584 40.000 22.08 8.78 43.03 4.93
2081 2216 6.843208 TGAGAGTTCTGAACTAGTATTGTCG 58.157 40.000 22.08 0.00 43.03 4.35
2084 2219 8.994429 AACATGAGAGTTCTGAACTAGTATTG 57.006 34.615 22.08 16.96 43.03 1.90
2113 2256 9.515226 ACTCCTTGCTAGTCAAACAATAAATTA 57.485 29.630 0.00 0.00 33.65 1.40
2114 2257 8.299570 CACTCCTTGCTAGTCAAACAATAAATT 58.700 33.333 0.00 0.00 33.65 1.82
2132 2275 2.249309 CAACGCACGCACTCCTTG 59.751 61.111 0.00 0.00 0.00 3.61
2133 2276 2.709125 TAGCAACGCACGCACTCCTT 62.709 55.000 0.00 0.00 0.00 3.36
2134 2277 3.220999 TAGCAACGCACGCACTCCT 62.221 57.895 0.00 0.00 0.00 3.69
2135 2278 2.736995 TAGCAACGCACGCACTCC 60.737 61.111 0.00 0.00 0.00 3.85
2136 2279 2.470286 GTAGCAACGCACGCACTC 59.530 61.111 0.00 0.00 0.00 3.51
2137 2280 3.403057 CGTAGCAACGCACGCACT 61.403 61.111 0.00 0.00 43.12 4.40
2146 2289 7.168469 ACAAATTTTATTGTGGTTCGTAGCAAC 59.832 33.333 0.00 0.00 41.78 4.17
2147 2290 7.203910 ACAAATTTTATTGTGGTTCGTAGCAA 58.796 30.769 0.00 0.00 41.78 3.91
2148 2291 6.740110 ACAAATTTTATTGTGGTTCGTAGCA 58.260 32.000 0.00 0.00 41.78 3.49
2149 2292 7.380065 TGAACAAATTTTATTGTGGTTCGTAGC 59.620 33.333 9.43 0.00 42.49 3.58
2150 2293 8.789881 TGAACAAATTTTATTGTGGTTCGTAG 57.210 30.769 9.43 0.00 42.49 3.51
2151 2294 9.751542 ATTGAACAAATTTTATTGTGGTTCGTA 57.248 25.926 9.43 3.31 42.49 3.43
2152 2295 8.655651 ATTGAACAAATTTTATTGTGGTTCGT 57.344 26.923 9.43 1.49 42.49 3.85
2157 2300 9.771915 GCCATAATTGAACAAATTTTATTGTGG 57.228 29.630 10.62 10.62 42.49 4.17
2164 2307 9.341078 ACTTTGAGCCATAATTGAACAAATTTT 57.659 25.926 0.00 0.00 39.29 1.82
2165 2308 8.907222 ACTTTGAGCCATAATTGAACAAATTT 57.093 26.923 0.00 0.00 39.29 1.82
2166 2309 8.907222 AACTTTGAGCCATAATTGAACAAATT 57.093 26.923 0.00 0.00 41.47 1.82
2167 2310 8.776470 CAAACTTTGAGCCATAATTGAACAAAT 58.224 29.630 0.00 0.00 0.00 2.32
2168 2311 7.768120 ACAAACTTTGAGCCATAATTGAACAAA 59.232 29.630 8.55 0.00 0.00 2.83
2169 2312 7.271511 ACAAACTTTGAGCCATAATTGAACAA 58.728 30.769 8.55 0.00 0.00 2.83
2170 2313 6.815089 ACAAACTTTGAGCCATAATTGAACA 58.185 32.000 8.55 0.00 0.00 3.18
2171 2314 7.713764 AACAAACTTTGAGCCATAATTGAAC 57.286 32.000 8.55 0.00 0.00 3.18
2172 2315 9.474920 CTTAACAAACTTTGAGCCATAATTGAA 57.525 29.630 8.55 0.00 0.00 2.69
2173 2316 8.637986 ACTTAACAAACTTTGAGCCATAATTGA 58.362 29.630 8.55 0.00 0.00 2.57
2174 2317 8.816640 ACTTAACAAACTTTGAGCCATAATTG 57.183 30.769 8.55 0.00 0.00 2.32
2179 2322 8.088365 GGAATTACTTAACAAACTTTGAGCCAT 58.912 33.333 8.55 0.00 0.00 4.40
2180 2323 7.068839 TGGAATTACTTAACAAACTTTGAGCCA 59.931 33.333 8.55 0.00 0.00 4.75
2181 2324 7.430441 TGGAATTACTTAACAAACTTTGAGCC 58.570 34.615 8.55 0.00 0.00 4.70
2182 2325 8.865590 TTGGAATTACTTAACAAACTTTGAGC 57.134 30.769 8.55 0.00 0.00 4.26
2203 2346 9.699410 AGGATTACAATCTAACATGATTTTGGA 57.301 29.630 0.00 0.00 34.77 3.53
2204 2347 9.740239 CAGGATTACAATCTAACATGATTTTGG 57.260 33.333 0.00 0.00 34.77 3.28
2205 2348 9.241317 GCAGGATTACAATCTAACATGATTTTG 57.759 33.333 0.00 0.00 34.77 2.44
2206 2349 8.131100 CGCAGGATTACAATCTAACATGATTTT 58.869 33.333 0.00 0.00 34.77 1.82
2207 2350 7.642669 CGCAGGATTACAATCTAACATGATTT 58.357 34.615 0.00 0.00 34.77 2.17
2208 2351 6.293626 GCGCAGGATTACAATCTAACATGATT 60.294 38.462 0.30 0.00 37.16 2.57
2211 2354 4.273235 TGCGCAGGATTACAATCTAACATG 59.727 41.667 5.66 0.00 35.73 3.21
2213 2356 3.867857 TGCGCAGGATTACAATCTAACA 58.132 40.909 5.66 0.00 35.73 2.41
2215 2358 7.584108 CATATTTGCGCAGGATTACAATCTAA 58.416 34.615 11.31 0.00 35.73 2.10
2244 2402 3.981071 AGCTACTATTGGACAGTTGCA 57.019 42.857 10.60 0.00 44.06 4.08
2252 2410 3.566742 TGCGATTCGTAGCTACTATTGGA 59.433 43.478 21.20 15.28 0.00 3.53
2264 2423 1.987770 GAAGTTCGGTTGCGATTCGTA 59.012 47.619 8.03 0.00 0.00 3.43
2293 2452 4.584638 TTGGATTATTACTGTGCCCACT 57.415 40.909 0.00 0.00 0.00 4.00
2294 2453 6.952773 TTATTGGATTATTACTGTGCCCAC 57.047 37.500 0.00 0.00 0.00 4.61
2295 2454 9.461312 GATATTATTGGATTATTACTGTGCCCA 57.539 33.333 0.00 0.00 0.00 5.36
2296 2455 9.686683 AGATATTATTGGATTATTACTGTGCCC 57.313 33.333 0.00 0.00 0.00 5.36
2312 2499 4.617253 TCCGGTGGACCAGATATTATTG 57.383 45.455 0.00 0.00 35.14 1.90
2364 2551 6.438425 AGGGTATGCTTGTCAAAAATCTGAAT 59.562 34.615 0.00 0.00 0.00 2.57
2394 2581 1.461127 GTGAGCGGTTGTCTGTCATTC 59.539 52.381 0.00 0.00 0.00 2.67
2636 2823 2.662006 TTCTGTCGAGAAGCATCTGG 57.338 50.000 0.00 0.00 35.54 3.86
2692 2887 5.119694 GGAAGTTATTAACAGGCCTGAGAG 58.880 45.833 39.19 13.58 0.00 3.20
2716 2911 5.384063 TGTAACCATTAACAGCCACAATG 57.616 39.130 0.00 0.00 0.00 2.82
2737 2934 3.181498 TGCAATACGACTGGAATGCAATG 60.181 43.478 0.00 0.00 40.47 2.82
2738 2935 3.016031 TGCAATACGACTGGAATGCAAT 58.984 40.909 0.00 0.00 40.47 3.56
2740 2937 1.737236 GTGCAATACGACTGGAATGCA 59.263 47.619 0.00 0.00 41.08 3.96
2741 2938 2.009774 AGTGCAATACGACTGGAATGC 58.990 47.619 0.00 0.00 0.00 3.56
2783 2980 6.238484 CGTCCTCTGGATGAAATAATTGAACC 60.238 42.308 0.00 0.00 40.94 3.62
2796 2994 2.305928 AGATCAGTCGTCCTCTGGATG 58.694 52.381 0.00 0.00 39.89 3.51
2881 3079 5.301551 CAGTAGATACTCCATGCTGTTCTCT 59.698 44.000 0.00 0.00 33.46 3.10
2896 3094 6.266558 ACTCCTTGATGACATCCAGTAGATAC 59.733 42.308 13.92 0.00 32.37 2.24
2932 3130 0.398318 AAGGCTCAAGTCCCAGTGTC 59.602 55.000 0.00 0.00 0.00 3.67
3019 3217 2.832129 TGACTTCTGGTATGGTGTCCTC 59.168 50.000 0.00 0.00 0.00 3.71
3199 3397 1.295423 GTAGCCCGAGTTTGCAGGA 59.705 57.895 0.00 0.00 0.00 3.86
3200 3398 1.745489 GGTAGCCCGAGTTTGCAGG 60.745 63.158 0.00 0.00 0.00 4.85
3220 3418 4.583871 AGAACTGTGAAGCTAATCTTGGG 58.416 43.478 0.00 0.00 34.56 4.12
3301 3499 1.048601 TTCGAGCTGGAGTCCAAGTT 58.951 50.000 14.17 5.54 30.80 2.66
3325 3523 0.541764 TTGACATTGGGGTCCTTGCC 60.542 55.000 0.00 0.00 36.97 4.52
3391 3589 0.765510 ACACTGGTTCTTGGGGAGAC 59.234 55.000 0.00 0.00 33.02 3.36
3451 3649 1.945394 GGTGCATCTAGTGGCTCAATG 59.055 52.381 9.22 0.00 0.00 2.82
3592 3790 1.953138 GAGGATGAGCGCCATGACG 60.953 63.158 14.84 0.00 35.17 4.35
3640 3838 1.665679 CGGTTGATGGTCAGGAAATCG 59.334 52.381 0.00 0.00 0.00 3.34
3721 3919 1.133025 CGTTCCTGGATGAATGTTGGC 59.867 52.381 0.00 0.00 0.00 4.52
3724 3922 2.496899 AGCGTTCCTGGATGAATGTT 57.503 45.000 0.00 0.00 34.43 2.71
3739 3937 1.148157 CGCGGATGAAGATGAAGCGT 61.148 55.000 0.00 0.00 41.04 5.07
3793 3991 2.768527 GACAATGAGGGAGGAGATCACA 59.231 50.000 0.00 0.00 31.63 3.58
3919 4117 2.245096 GCATTTGTTGTGATGAGCGAC 58.755 47.619 0.00 0.00 0.00 5.19
3958 4156 2.506217 TAGCTCGGAACAAGCGCG 60.506 61.111 0.00 0.00 0.00 6.86
4009 4207 1.448717 GGTGAGGAAGAAGAGCGCC 60.449 63.158 2.29 0.00 0.00 6.53
4060 4258 4.775236 AGTGAAGCCATCTCCAGTAAATC 58.225 43.478 0.00 0.00 0.00 2.17
4139 4337 3.518068 GCCGGTGTAGCAATGGCC 61.518 66.667 1.90 0.00 42.56 5.36
4186 4384 3.416156 GCCACTCAACTTGATTTCTCCT 58.584 45.455 0.00 0.00 0.00 3.69
4200 4398 2.306805 AGTTGATCATGAAGGCCACTCA 59.693 45.455 5.01 7.92 0.00 3.41
4201 4399 2.681848 CAGTTGATCATGAAGGCCACTC 59.318 50.000 5.01 0.77 0.00 3.51
4279 4477 2.357952 CCAGATGCTGTCCATTGTGATG 59.642 50.000 0.00 0.00 33.29 3.07
4363 4561 6.323482 TCCTCTCATTCTTGGAGTAGAATCTG 59.677 42.308 0.00 0.00 41.68 2.90
4400 4598 1.838112 TTGGTATGCCTTTGCTGGAG 58.162 50.000 0.16 0.00 38.71 3.86
4453 4654 6.373774 TCTGCCAAAAGAGAATGAGAAAGATC 59.626 38.462 0.00 0.00 0.00 2.75
4474 4675 5.511234 AGGAGATAACAAATGCATTCTGC 57.489 39.130 13.38 9.70 45.29 4.26
4559 4760 5.051891 AGAAAGAATGATGTTGGCTTTCG 57.948 39.130 0.00 0.00 45.42 3.46
4593 4794 0.618458 TGGGGCACATCTACCTGAAC 59.382 55.000 0.00 0.00 0.00 3.18
4635 4836 0.250510 TTGCATGGCGACCTACAACA 60.251 50.000 0.00 0.00 0.00 3.33
4654 4855 4.162888 TCACAGTATGACTTCCTGCATGAT 59.837 41.667 0.00 0.00 39.69 2.45
4677 4878 9.935241 CTATGGTTCTTATATGTAAGAGCACAT 57.065 33.333 21.66 21.30 44.98 3.21
4795 4996 5.371115 TGATGCAGTAGCTTTTGTAAACC 57.629 39.130 0.00 0.00 42.74 3.27
5052 5254 8.963725 AGTTTACCTACAAAACTAAAGTTGCTT 58.036 29.630 0.00 0.00 43.54 3.91
5094 5296 5.488341 TGTTCCATGGAAAGTTACTCTAGC 58.512 41.667 28.64 11.98 35.75 3.42
5136 5338 0.964860 GGTGCATGCACATACACCCA 60.965 55.000 42.35 8.06 45.35 4.51
5158 5360 3.955650 ATGTGCTTTAGTAGTGGTCGT 57.044 42.857 0.00 0.00 0.00 4.34
5159 5361 6.903883 ATTTATGTGCTTTAGTAGTGGTCG 57.096 37.500 0.00 0.00 0.00 4.79
5209 5568 5.003804 ACCTACATGTGTGGAAATTCTGTC 58.996 41.667 21.55 0.00 0.00 3.51
5210 5569 4.985538 ACCTACATGTGTGGAAATTCTGT 58.014 39.130 21.55 0.00 0.00 3.41
5288 5649 4.100189 AGTGAGCTGTATCATGTTACTCCC 59.900 45.833 13.67 4.11 0.00 4.30
5303 5664 1.989165 GCTCTCGTAAACAGTGAGCTG 59.011 52.381 11.49 0.00 45.98 4.24
5304 5665 2.355717 GCTCTCGTAAACAGTGAGCT 57.644 50.000 11.49 0.00 45.98 4.09



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.