Multiple sequence alignment - TraesCS5A01G204100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G204100 chr5A 100.000 6468 0 0 926 7393 413409607 413416074 0.000000e+00 11945.0
1 TraesCS5A01G204100 chr5A 100.000 628 0 0 1 628 413408682 413409309 0.000000e+00 1160.0
2 TraesCS5A01G204100 chr5A 90.258 349 34 0 5756 6104 413414356 413414704 2.430000e-124 457.0
3 TraesCS5A01G204100 chr5A 90.258 349 34 0 5675 6023 413414437 413414785 2.430000e-124 457.0
4 TraesCS5A01G204100 chr5A 86.601 306 25 9 2292 2583 413410630 413410933 2.570000e-84 324.0
5 TraesCS5A01G204100 chr5A 86.601 306 25 9 1949 2252 413410973 413411264 2.570000e-84 324.0
6 TraesCS5A01G204100 chr5A 88.060 268 32 0 5837 6104 413414356 413414623 1.200000e-82 318.0
7 TraesCS5A01G204100 chr5A 88.060 268 32 0 5675 5942 413414518 413414785 1.200000e-82 318.0
8 TraesCS5A01G204100 chr5A 100.000 70 0 0 1316 1385 413409228 413409159 6.020000e-26 130.0
9 TraesCS5A01G204100 chr5A 98.630 73 1 0 478 550 413410066 413409994 6.020000e-26 130.0
10 TraesCS5A01G204100 chr5B 95.363 4766 164 23 2439 7184 372108848 372104120 0.000000e+00 7524.0
11 TraesCS5A01G204100 chr5B 93.924 971 33 10 1392 2345 372110506 372109545 0.000000e+00 1443.0
12 TraesCS5A01G204100 chr5B 90.631 523 32 8 115 628 372111494 372110980 0.000000e+00 678.0
13 TraesCS5A01G204100 chr5B 95.325 385 16 1 926 1310 372110929 372110547 1.760000e-170 610.0
14 TraesCS5A01G204100 chr5B 88.158 456 22 12 2003 2445 372109468 372109032 1.420000e-141 514.0
15 TraesCS5A01G204100 chr5B 88.011 367 35 1 5675 6041 372105525 372105168 6.860000e-115 425.0
16 TraesCS5A01G204100 chr5B 86.022 372 43 1 5751 6122 372105611 372105249 2.500000e-104 390.0
17 TraesCS5A01G204100 chr5B 92.537 268 20 0 5675 5942 372105453 372105186 1.160000e-102 385.0
18 TraesCS5A01G204100 chr5B 87.255 306 23 7 2292 2583 372109940 372109637 1.190000e-87 335.0
19 TraesCS5A01G204100 chr5B 85.911 291 32 1 5832 6122 372105611 372105330 1.210000e-77 302.0
20 TraesCS5A01G204100 chr5B 87.552 241 17 4 2355 2583 372109460 372109221 4.400000e-67 267.0
21 TraesCS5A01G204100 chr5B 89.305 187 20 0 5675 5861 372105372 372105186 1.240000e-57 235.0
22 TraesCS5A01G204100 chr5B 83.673 147 13 4 2106 2252 372108839 372108704 2.170000e-25 128.0
23 TraesCS5A01G204100 chr5B 93.846 65 4 0 1321 1385 372111065 372111129 1.700000e-16 99.0
24 TraesCS5A01G204100 chr5D 95.598 2908 80 14 2008 4898 320892662 320889786 0.000000e+00 4617.0
25 TraesCS5A01G204100 chr5D 91.718 1449 85 18 5751 7184 320888972 320887544 0.000000e+00 1978.0
26 TraesCS5A01G204100 chr5D 96.410 1142 41 0 4900 6041 320889742 320888601 0.000000e+00 1882.0
27 TraesCS5A01G204100 chr5D 93.245 977 35 12 1392 2358 320893702 320892747 0.000000e+00 1410.0
28 TraesCS5A01G204100 chr5D 87.616 541 24 16 115 628 320894715 320894191 8.260000e-164 588.0
29 TraesCS5A01G204100 chr5D 91.457 398 17 2 928 1310 320894138 320893743 1.410000e-146 531.0
30 TraesCS5A01G204100 chr5D 89.925 268 27 0 5675 5942 320888886 320888619 5.490000e-91 346.0
31 TraesCS5A01G204100 chr5D 87.000 300 27 9 2292 2583 320893147 320892852 1.990000e-85 327.0
32 TraesCS5A01G204100 chr5D 87.956 274 33 0 5832 6105 320888972 320888699 2.570000e-84 324.0
33 TraesCS5A01G204100 chr5D 84.194 310 29 10 1949 2252 320892378 320892083 4.370000e-72 283.0
34 TraesCS5A01G204100 chr5D 90.323 217 17 1 7181 7393 519823130 519823346 1.570000e-71 281.0
35 TraesCS5A01G204100 chr5D 88.017 242 18 2 2353 2583 320892661 320892420 7.310000e-70 276.0
36 TraesCS5A01G204100 chr5D 86.702 188 23 2 5675 5861 320888805 320888619 2.700000e-49 207.0
37 TraesCS5A01G204100 chr5D 83.254 209 35 0 5914 6122 320888971 320888763 7.570000e-45 193.0
38 TraesCS5A01G204100 chr5D 92.308 117 9 0 1 117 312151330 312151446 4.590000e-37 167.0
39 TraesCS5A01G204100 chr5D 88.750 80 2 1 1313 1385 320894260 320894339 2.840000e-14 91.6
40 TraesCS5A01G204100 chr6D 80.690 1740 201 51 2382 4024 409753421 409755122 0.000000e+00 1227.0
41 TraesCS5A01G204100 chr6D 91.121 214 14 2 7184 7393 39585115 39585327 1.210000e-72 285.0
42 TraesCS5A01G204100 chr6D 86.813 91 6 4 6814 6902 418523597 418523511 6.110000e-16 97.1
43 TraesCS5A01G204100 chr6D 84.211 95 9 4 6810 6902 438275609 438275699 3.670000e-13 87.9
44 TraesCS5A01G204100 chr6B 81.158 1624 195 63 2481 4019 615967736 615969333 0.000000e+00 1201.0
45 TraesCS5A01G204100 chr6A 83.659 973 122 21 2480 3421 555220760 555221726 0.000000e+00 881.0
46 TraesCS5A01G204100 chr6A 82.534 521 62 13 3527 4019 555227278 555227797 1.470000e-116 431.0
47 TraesCS5A01G204100 chr6A 78.431 306 42 13 4084 4378 555228009 555228301 2.120000e-40 178.0
48 TraesCS5A01G204100 chr6A 90.244 123 12 0 2 124 541597179 541597057 2.130000e-35 161.0
49 TraesCS5A01G204100 chr3A 94.313 211 7 2 7187 7393 40251520 40251311 1.200000e-82 318.0
50 TraesCS5A01G204100 chr3A 91.943 211 11 3 7187 7393 227404254 227404462 2.610000e-74 291.0
51 TraesCS5A01G204100 chr3A 93.913 115 7 0 1 115 669949117 669949003 2.740000e-39 174.0
52 TraesCS5A01G204100 chr3A 93.043 115 8 0 1 115 635154260 635154374 1.280000e-37 169.0
53 TraesCS5A01G204100 chr3A 87.912 91 6 3 6815 6902 412373242 412373154 1.310000e-17 102.0
54 TraesCS5A01G204100 chr3A 85.417 96 8 4 6815 6908 480969572 480969481 2.200000e-15 95.3
55 TraesCS5A01G204100 chr7A 94.203 207 8 1 7191 7393 595204073 595203867 5.570000e-81 313.0
56 TraesCS5A01G204100 chr1A 93.396 212 10 1 7186 7393 547342622 547342833 2.000000e-80 311.0
57 TraesCS5A01G204100 chr1A 85.556 90 7 4 6815 6902 10158710 10158795 1.020000e-13 89.8
58 TraesCS5A01G204100 chr2B 90.991 222 15 2 7177 7393 690214196 690214417 2.020000e-75 294.0
59 TraesCS5A01G204100 chr2B 92.308 117 9 0 1 117 384337832 384337716 4.590000e-37 167.0
60 TraesCS5A01G204100 chr7D 91.589 214 13 2 7183 7392 630373390 630373602 2.610000e-74 291.0
61 TraesCS5A01G204100 chr7D 86.170 94 7 4 6811 6902 279213 279302 6.110000e-16 97.1
62 TraesCS5A01G204100 chr2D 91.943 211 12 2 7187 7393 60710732 60710523 2.610000e-74 291.0
63 TraesCS5A01G204100 chr2D 88.636 88 6 3 6815 6902 27072096 27072179 3.650000e-18 104.0
64 TraesCS5A01G204100 chr4A 95.495 111 4 1 7 117 584271481 584271372 7.620000e-40 176.0
65 TraesCS5A01G204100 chr1B 94.595 111 6 0 1 111 453772715 453772825 9.860000e-39 172.0
66 TraesCS5A01G204100 chr4B 92.373 118 8 1 1 118 565993888 565993772 4.590000e-37 167.0
67 TraesCS5A01G204100 chrUn 92.241 116 8 1 1 115 89793331 89793446 5.940000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G204100 chr5A 413408682 413416074 7392 False 6552.500000 11945 100.000000 1 7393 2 chr5A.!!$F1 7392
1 TraesCS5A01G204100 chr5A 413410630 413414785 4155 False 366.333333 457 88.306333 1949 6104 6 chr5A.!!$F2 4155
2 TraesCS5A01G204100 chr5B 372104120 372111494 7374 True 1018.153846 7524 89.512846 115 7184 13 chr5B.!!$R1 7069
3 TraesCS5A01G204100 chr5D 320887544 320894715 7171 True 997.076923 4617 89.468615 115 7184 13 chr5D.!!$R1 7069
4 TraesCS5A01G204100 chr6D 409753421 409755122 1701 False 1227.000000 1227 80.690000 2382 4024 1 chr6D.!!$F2 1642
5 TraesCS5A01G204100 chr6B 615967736 615969333 1597 False 1201.000000 1201 81.158000 2481 4019 1 chr6B.!!$F1 1538
6 TraesCS5A01G204100 chr6A 555220760 555221726 966 False 881.000000 881 83.659000 2480 3421 1 chr6A.!!$F1 941
7 TraesCS5A01G204100 chr6A 555227278 555228301 1023 False 304.500000 431 80.482500 3527 4378 2 chr6A.!!$F2 851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
435 462 0.030705 CATCCTCCCTCTCCTTCCCA 60.031 60.0 0.00 0.00 0.00 4.37 F
440 467 0.491823 TCCCTCTCCTTCCCACAAGA 59.508 55.0 0.00 0.00 0.00 3.02 F
441 468 0.615850 CCCTCTCCTTCCCACAAGAC 59.384 60.0 0.00 0.00 0.00 3.01 F
1329 1378 0.692419 ATGGTGTCTAGGGAGGGCTG 60.692 60.0 0.00 0.00 0.00 4.85 F
1358 1407 0.034896 GTGGGTAGTGGGTGTGTCAG 59.965 60.0 0.00 0.00 0.00 3.51 F
1593 1645 0.249120 TTCGCTCCAACATCGATGGT 59.751 50.0 28.09 20.88 39.09 3.55 F
1594 1646 0.460109 TCGCTCCAACATCGATGGTG 60.460 55.0 32.16 32.16 44.93 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1339 1388 0.034896 CTGACACACCCACTACCCAC 59.965 60.000 0.00 0.00 0.00 4.61 R
1342 1391 1.000955 CTCACTGACACACCCACTACC 59.999 57.143 0.00 0.00 0.00 3.18 R
1344 1393 1.338107 CCTCACTGACACACCCACTA 58.662 55.000 0.00 0.00 0.00 2.74 R
6264 7730 1.296715 GAACCACCTGATCAGCGGT 59.703 57.895 22.84 22.84 35.15 5.68 R
6305 7771 4.733077 TGGATTTGAAGGAGGTAAACCA 57.267 40.909 1.26 0.00 38.89 3.67 R
6375 7841 0.627307 GTTCATTCGTCGTCGTCGTC 59.373 55.000 11.41 0.00 38.33 4.20 R
6489 7960 3.181483 GCCTCCACAGCAGAATTTAATGG 60.181 47.826 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.017048 CATCCCATTGGGCAAACTAGA 57.983 47.619 17.60 0.00 43.94 2.43
21 22 3.569491 CATCCCATTGGGCAAACTAGAT 58.431 45.455 17.60 0.00 43.94 1.98
22 23 4.728772 CATCCCATTGGGCAAACTAGATA 58.271 43.478 17.60 0.00 43.94 1.98
23 24 4.164843 TCCCATTGGGCAAACTAGATAC 57.835 45.455 17.60 0.00 43.94 2.24
24 25 3.525609 TCCCATTGGGCAAACTAGATACA 59.474 43.478 17.60 0.00 43.94 2.29
25 26 4.017958 TCCCATTGGGCAAACTAGATACAA 60.018 41.667 17.60 0.00 43.94 2.41
26 27 4.097892 CCCATTGGGCAAACTAGATACAAC 59.902 45.833 9.28 0.00 35.35 3.32
27 28 4.097892 CCATTGGGCAAACTAGATACAACC 59.902 45.833 0.00 0.00 0.00 3.77
28 29 3.359695 TGGGCAAACTAGATACAACCC 57.640 47.619 0.00 0.00 36.60 4.11
29 30 2.645297 TGGGCAAACTAGATACAACCCA 59.355 45.455 0.00 2.79 43.73 4.51
30 31 3.268334 TGGGCAAACTAGATACAACCCAT 59.732 43.478 0.00 0.00 41.13 4.00
31 32 4.264172 TGGGCAAACTAGATACAACCCATT 60.264 41.667 0.00 0.00 41.13 3.16
32 33 5.044772 TGGGCAAACTAGATACAACCCATTA 60.045 40.000 0.00 0.00 41.13 1.90
33 34 5.889289 GGGCAAACTAGATACAACCCATTAA 59.111 40.000 0.00 0.00 36.07 1.40
34 35 6.378848 GGGCAAACTAGATACAACCCATTAAA 59.621 38.462 0.00 0.00 36.07 1.52
35 36 7.416326 GGGCAAACTAGATACAACCCATTAAAG 60.416 40.741 0.00 0.00 36.07 1.85
36 37 7.122204 GGCAAACTAGATACAACCCATTAAAGT 59.878 37.037 0.00 0.00 0.00 2.66
37 38 8.520351 GCAAACTAGATACAACCCATTAAAGTT 58.480 33.333 0.00 0.00 0.00 2.66
38 39 9.840427 CAAACTAGATACAACCCATTAAAGTTG 57.160 33.333 12.35 12.35 46.95 3.16
49 50 9.751542 CAACCCATTAAAGTTGTTGTATGTTAA 57.248 29.630 7.76 0.00 38.81 2.01
50 51 9.974980 AACCCATTAAAGTTGTTGTATGTTAAG 57.025 29.630 0.00 0.00 0.00 1.85
51 52 8.581578 ACCCATTAAAGTTGTTGTATGTTAAGG 58.418 33.333 0.00 0.00 0.00 2.69
52 53 8.581578 CCCATTAAAGTTGTTGTATGTTAAGGT 58.418 33.333 0.00 0.00 0.00 3.50
53 54 9.405587 CCATTAAAGTTGTTGTATGTTAAGGTG 57.594 33.333 0.00 0.00 0.00 4.00
54 55 9.959749 CATTAAAGTTGTTGTATGTTAAGGTGT 57.040 29.630 0.00 0.00 0.00 4.16
56 57 9.790389 TTAAAGTTGTTGTATGTTAAGGTGTTG 57.210 29.630 0.00 0.00 0.00 3.33
57 58 7.633193 AAGTTGTTGTATGTTAAGGTGTTGA 57.367 32.000 0.00 0.00 0.00 3.18
58 59 7.817418 AGTTGTTGTATGTTAAGGTGTTGAT 57.183 32.000 0.00 0.00 0.00 2.57
59 60 8.232913 AGTTGTTGTATGTTAAGGTGTTGATT 57.767 30.769 0.00 0.00 0.00 2.57
60 61 8.134895 AGTTGTTGTATGTTAAGGTGTTGATTG 58.865 33.333 0.00 0.00 0.00 2.67
61 62 7.809546 TGTTGTATGTTAAGGTGTTGATTGA 57.190 32.000 0.00 0.00 0.00 2.57
62 63 8.402798 TGTTGTATGTTAAGGTGTTGATTGAT 57.597 30.769 0.00 0.00 0.00 2.57
63 64 8.296000 TGTTGTATGTTAAGGTGTTGATTGATG 58.704 33.333 0.00 0.00 0.00 3.07
64 65 8.511321 GTTGTATGTTAAGGTGTTGATTGATGA 58.489 33.333 0.00 0.00 0.00 2.92
65 66 8.039603 TGTATGTTAAGGTGTTGATTGATGAC 57.960 34.615 0.00 0.00 0.00 3.06
66 67 7.663493 TGTATGTTAAGGTGTTGATTGATGACA 59.337 33.333 0.00 0.00 0.00 3.58
67 68 7.707624 ATGTTAAGGTGTTGATTGATGACAT 57.292 32.000 0.00 0.00 0.00 3.06
68 69 6.912082 TGTTAAGGTGTTGATTGATGACATG 58.088 36.000 0.00 0.00 0.00 3.21
69 70 6.714356 TGTTAAGGTGTTGATTGATGACATGA 59.286 34.615 0.00 0.00 0.00 3.07
70 71 5.633830 AAGGTGTTGATTGATGACATGAC 57.366 39.130 0.00 0.00 0.00 3.06
71 72 4.654915 AGGTGTTGATTGATGACATGACA 58.345 39.130 0.00 0.00 0.00 3.58
72 73 5.258841 AGGTGTTGATTGATGACATGACAT 58.741 37.500 10.50 10.50 0.00 3.06
73 74 6.417258 AGGTGTTGATTGATGACATGACATA 58.583 36.000 10.67 0.00 0.00 2.29
74 75 7.058525 AGGTGTTGATTGATGACATGACATAT 58.941 34.615 10.67 2.13 0.00 1.78
75 76 7.558807 AGGTGTTGATTGATGACATGACATATT 59.441 33.333 10.67 0.00 0.00 1.28
76 77 8.192774 GGTGTTGATTGATGACATGACATATTT 58.807 33.333 10.67 0.00 0.00 1.40
77 78 9.577110 GTGTTGATTGATGACATGACATATTTT 57.423 29.630 10.67 0.00 0.00 1.82
110 111 8.668510 AGCTAACATACAAACTATTGGAGATG 57.331 34.615 0.00 0.00 41.01 2.90
111 112 8.267894 AGCTAACATACAAACTATTGGAGATGT 58.732 33.333 0.00 0.00 41.01 3.06
112 113 8.552034 GCTAACATACAAACTATTGGAGATGTC 58.448 37.037 6.52 0.00 41.01 3.06
113 114 7.865706 AACATACAAACTATTGGAGATGTCC 57.134 36.000 0.83 0.83 44.24 4.02
114 115 7.200434 ACATACAAACTATTGGAGATGTCCT 57.800 36.000 10.72 0.00 44.30 3.85
115 116 8.319057 ACATACAAACTATTGGAGATGTCCTA 57.681 34.615 10.72 2.53 44.30 2.94
116 117 8.768397 ACATACAAACTATTGGAGATGTCCTAA 58.232 33.333 10.72 3.54 44.30 2.69
117 118 9.613428 CATACAAACTATTGGAGATGTCCTAAA 57.387 33.333 10.72 0.00 44.30 1.85
187 188 5.048713 CACACTTCCATTTACTGTCCTTTCC 60.049 44.000 0.00 0.00 0.00 3.13
206 207 3.028366 GCGAGAAGCGTCTTTGCCC 62.028 63.158 14.07 0.00 43.41 5.36
207 208 2.391389 CGAGAAGCGTCTTTGCCCC 61.391 63.158 2.97 0.00 32.80 5.80
208 209 1.003233 GAGAAGCGTCTTTGCCCCT 60.003 57.895 2.97 0.00 32.80 4.79
209 210 0.606673 GAGAAGCGTCTTTGCCCCTT 60.607 55.000 2.97 0.00 32.80 3.95
210 211 0.690762 AGAAGCGTCTTTGCCCCTTA 59.309 50.000 0.00 0.00 34.65 2.69
211 212 1.282157 AGAAGCGTCTTTGCCCCTTAT 59.718 47.619 0.00 0.00 34.65 1.73
393 394 3.455469 CCCGACCGTCCACCTACC 61.455 72.222 0.00 0.00 0.00 3.18
418 419 2.125912 ACAGCACCTCCCCTCCAT 59.874 61.111 0.00 0.00 0.00 3.41
435 462 0.030705 CATCCTCCCTCTCCTTCCCA 60.031 60.000 0.00 0.00 0.00 4.37
438 465 0.547712 CCTCCCTCTCCTTCCCACAA 60.548 60.000 0.00 0.00 0.00 3.33
439 466 0.908198 CTCCCTCTCCTTCCCACAAG 59.092 60.000 0.00 0.00 0.00 3.16
440 467 0.491823 TCCCTCTCCTTCCCACAAGA 59.508 55.000 0.00 0.00 0.00 3.02
441 468 0.615850 CCCTCTCCTTCCCACAAGAC 59.384 60.000 0.00 0.00 0.00 3.01
442 469 0.615850 CCTCTCCTTCCCACAAGACC 59.384 60.000 0.00 0.00 0.00 3.85
443 470 1.352083 CTCTCCTTCCCACAAGACCA 58.648 55.000 0.00 0.00 0.00 4.02
551 585 2.446802 GCCCTCCCTAGACCCCTG 60.447 72.222 0.00 0.00 0.00 4.45
552 586 2.446802 CCCTCCCTAGACCCCTGC 60.447 72.222 0.00 0.00 0.00 4.85
553 587 2.699496 CCTCCCTAGACCCCTGCT 59.301 66.667 0.00 0.00 0.00 4.24
570 604 3.464907 CTGCTCTCTCTCTCTCTCTCTG 58.535 54.545 0.00 0.00 0.00 3.35
971 1005 1.067199 CGCTTCGTCCTTGCATTTGC 61.067 55.000 0.00 0.00 42.50 3.68
1164 1198 2.815647 CTCTTGCGCTCCCCGTTC 60.816 66.667 9.73 0.00 39.71 3.95
1239 1288 3.512516 GCGATGCCTTGCTCACCC 61.513 66.667 0.00 0.00 0.00 4.61
1262 1311 6.220201 CCAATTTGTTTTACCGTCTTCCAAT 58.780 36.000 0.00 0.00 0.00 3.16
1264 1313 7.327518 CCAATTTGTTTTACCGTCTTCCAATAC 59.672 37.037 0.00 0.00 0.00 1.89
1265 1314 6.939132 TTTGTTTTACCGTCTTCCAATACA 57.061 33.333 0.00 0.00 0.00 2.29
1267 1316 6.303021 TGTTTTACCGTCTTCCAATACAAC 57.697 37.500 0.00 0.00 0.00 3.32
1268 1317 5.821470 TGTTTTACCGTCTTCCAATACAACA 59.179 36.000 0.00 0.00 0.00 3.33
1269 1318 6.318144 TGTTTTACCGTCTTCCAATACAACAA 59.682 34.615 0.00 0.00 0.00 2.83
1292 1341 1.068250 GCCTAGGATCGTGGTGCTC 59.932 63.158 14.75 0.00 0.00 4.26
1310 1359 4.040047 TGCTCTGGATTCTTCCCAATCTA 58.960 43.478 0.00 0.00 41.83 1.98
1311 1360 4.662179 TGCTCTGGATTCTTCCCAATCTAT 59.338 41.667 0.00 0.00 41.83 1.98
1312 1361 5.002516 GCTCTGGATTCTTCCCAATCTATG 58.997 45.833 0.00 0.00 41.83 2.23
1325 1374 3.580458 CCAATCTATGGTGTCTAGGGAGG 59.420 52.174 0.00 0.00 44.85 4.30
1326 1375 3.551635 ATCTATGGTGTCTAGGGAGGG 57.448 52.381 0.00 0.00 0.00 4.30
1327 1376 1.133136 TCTATGGTGTCTAGGGAGGGC 60.133 57.143 0.00 0.00 0.00 5.19
1328 1377 0.941963 TATGGTGTCTAGGGAGGGCT 59.058 55.000 0.00 0.00 0.00 5.19
1329 1378 0.692419 ATGGTGTCTAGGGAGGGCTG 60.692 60.000 0.00 0.00 0.00 4.85
1331 1380 1.617947 GGTGTCTAGGGAGGGCTGTG 61.618 65.000 0.00 0.00 0.00 3.66
1332 1381 1.990060 TGTCTAGGGAGGGCTGTGC 60.990 63.158 0.00 0.00 0.00 4.57
1333 1382 2.759973 TCTAGGGAGGGCTGTGCG 60.760 66.667 0.00 0.00 0.00 5.34
1334 1383 2.759973 CTAGGGAGGGCTGTGCGA 60.760 66.667 0.00 0.00 0.00 5.10
1335 1384 3.075005 TAGGGAGGGCTGTGCGAC 61.075 66.667 0.00 0.00 0.00 5.19
1344 1393 4.602259 CTGTGCGACGGTGTGGGT 62.602 66.667 0.00 0.00 0.00 4.51
1345 1394 3.215597 CTGTGCGACGGTGTGGGTA 62.216 63.158 0.00 0.00 0.00 3.69
1347 1396 2.913578 TGCGACGGTGTGGGTAGT 60.914 61.111 0.00 0.00 0.00 2.73
1348 1397 2.431942 GCGACGGTGTGGGTAGTG 60.432 66.667 0.00 0.00 0.00 2.74
1349 1398 2.260434 CGACGGTGTGGGTAGTGG 59.740 66.667 0.00 0.00 0.00 4.00
1350 1399 2.660802 GACGGTGTGGGTAGTGGG 59.339 66.667 0.00 0.00 0.00 4.61
1351 1400 2.122725 ACGGTGTGGGTAGTGGGT 60.123 61.111 0.00 0.00 0.00 4.51
1352 1401 2.345991 CGGTGTGGGTAGTGGGTG 59.654 66.667 0.00 0.00 0.00 4.61
1353 1402 2.513259 CGGTGTGGGTAGTGGGTGT 61.513 63.158 0.00 0.00 0.00 4.16
1354 1403 1.072505 GGTGTGGGTAGTGGGTGTG 59.927 63.158 0.00 0.00 0.00 3.82
1355 1404 1.702022 GGTGTGGGTAGTGGGTGTGT 61.702 60.000 0.00 0.00 0.00 3.72
1356 1405 0.250166 GTGTGGGTAGTGGGTGTGTC 60.250 60.000 0.00 0.00 0.00 3.67
1357 1406 0.691413 TGTGGGTAGTGGGTGTGTCA 60.691 55.000 0.00 0.00 0.00 3.58
1358 1407 0.034896 GTGGGTAGTGGGTGTGTCAG 59.965 60.000 0.00 0.00 0.00 3.51
1359 1408 0.399376 TGGGTAGTGGGTGTGTCAGT 60.399 55.000 0.00 0.00 0.00 3.41
1360 1409 0.034896 GGGTAGTGGGTGTGTCAGTG 59.965 60.000 0.00 0.00 0.00 3.66
1361 1410 1.045407 GGTAGTGGGTGTGTCAGTGA 58.955 55.000 0.00 0.00 0.00 3.41
1362 1411 1.000955 GGTAGTGGGTGTGTCAGTGAG 59.999 57.143 0.00 0.00 0.00 3.51
1363 1412 1.000955 GTAGTGGGTGTGTCAGTGAGG 59.999 57.143 0.00 0.00 0.00 3.86
1364 1413 1.598130 GTGGGTGTGTCAGTGAGGC 60.598 63.158 0.00 0.00 0.00 4.70
1365 1414 1.766059 TGGGTGTGTCAGTGAGGCT 60.766 57.895 0.00 0.00 0.00 4.58
1366 1415 1.302033 GGGTGTGTCAGTGAGGCTG 60.302 63.158 0.00 0.00 46.34 4.85
1374 1423 3.371021 AGTGAGGCTGACGAGTGG 58.629 61.111 0.00 0.00 0.00 4.00
1375 1424 2.262915 GTGAGGCTGACGAGTGGG 59.737 66.667 0.00 0.00 0.00 4.61
1376 1425 3.695606 TGAGGCTGACGAGTGGGC 61.696 66.667 0.00 0.00 0.00 5.36
1377 1426 4.459089 GAGGCTGACGAGTGGGCC 62.459 72.222 0.00 0.00 44.38 5.80
1541 1593 5.842907 AGGGTTGTTGTTCTTCAAATAAGC 58.157 37.500 0.00 0.00 37.81 3.09
1543 1595 6.775629 AGGGTTGTTGTTCTTCAAATAAGCTA 59.224 34.615 0.00 0.00 37.81 3.32
1545 1597 7.755373 GGGTTGTTGTTCTTCAAATAAGCTATC 59.245 37.037 0.00 0.00 37.81 2.08
1591 1643 1.590238 GAGTTCGCTCCAACATCGATG 59.410 52.381 23.68 23.68 38.28 3.84
1592 1644 0.652592 GTTCGCTCCAACATCGATGG 59.347 55.000 28.09 13.66 39.41 3.51
1593 1645 0.249120 TTCGCTCCAACATCGATGGT 59.751 50.000 28.09 20.88 39.09 3.55
1594 1646 0.460109 TCGCTCCAACATCGATGGTG 60.460 55.000 32.16 32.16 44.93 4.17
1757 1809 2.237393 TTCACAGTGCAAAAATGCCC 57.763 45.000 0.00 0.00 0.00 5.36
1895 1947 4.082625 TGTTTGTGCTCCAGATGCTATTTG 60.083 41.667 0.00 0.00 0.00 2.32
1914 1966 7.254590 GCTATTTGCAGTAAGGTACTTCAGATG 60.255 40.741 0.00 0.00 45.29 2.90
1928 1980 5.182487 ACTTCAGATGTTGTTGTGTGTGTA 58.818 37.500 0.00 0.00 0.00 2.90
6171 7637 2.036731 ACCACGGAGATCGGTCCA 59.963 61.111 0.00 0.00 44.45 4.02
6370 7836 9.654663 GATAGACATTTCTGATGATGATGATGA 57.345 33.333 8.09 0.00 32.75 2.92
6372 7838 8.329203 AGACATTTCTGATGATGATGATGATG 57.671 34.615 8.09 0.00 0.00 3.07
6373 7839 8.157476 AGACATTTCTGATGATGATGATGATGA 58.843 33.333 8.09 0.00 0.00 2.92
6374 7840 8.100508 ACATTTCTGATGATGATGATGATGAC 57.899 34.615 8.09 0.00 0.00 3.06
6375 7841 6.780706 TTTCTGATGATGATGATGATGACG 57.219 37.500 0.00 0.00 0.00 4.35
6419 7889 5.589452 TCCTTTTCCGTCACTCTATACTCTC 59.411 44.000 0.00 0.00 0.00 3.20
6442 7912 6.122277 TCCTTATTCTGGATTAAACTGCTGG 58.878 40.000 0.00 0.00 0.00 4.85
6489 7960 9.271738 GTACTAGTAACTTATCAACTGTCGTTC 57.728 37.037 3.61 0.00 0.00 3.95
6618 8093 1.833630 AGCATGGAGTTAGCTGCACTA 59.166 47.619 2.22 0.00 45.67 2.74
6621 8096 3.993081 GCATGGAGTTAGCTGCACTATAG 59.007 47.826 2.22 0.00 45.67 1.31
6694 8169 1.699083 TGGTGAACTGAAGCATGGAGA 59.301 47.619 0.00 0.00 0.00 3.71
6741 8216 0.952984 TCATTTGCGCCATGTCGTCA 60.953 50.000 4.18 0.00 0.00 4.35
6784 8259 7.043722 CGAGAAAATCTCAGTGTCTAATACTGC 60.044 40.741 8.02 0.00 43.55 4.40
6785 8260 7.615403 AGAAAATCTCAGTGTCTAATACTGCA 58.385 34.615 0.00 0.00 43.97 4.41
6810 8285 5.777732 TGGTAAATTGGTTATTGTTGCTCCT 59.222 36.000 0.00 0.00 0.00 3.69
6830 8305 1.844497 TCATCTACTCCCTCCGTCTCA 59.156 52.381 0.00 0.00 0.00 3.27
6841 8316 7.239438 ACTCCCTCCGTCTCATAATATAAGAA 58.761 38.462 0.00 0.00 0.00 2.52
6842 8317 7.394923 ACTCCCTCCGTCTCATAATATAAGAAG 59.605 40.741 0.00 0.00 0.00 2.85
6843 8318 7.467650 TCCCTCCGTCTCATAATATAAGAAGA 58.532 38.462 0.00 0.00 0.00 2.87
6844 8319 7.612244 TCCCTCCGTCTCATAATATAAGAAGAG 59.388 40.741 0.00 0.00 0.00 2.85
6845 8320 7.254852 CCTCCGTCTCATAATATAAGAAGAGC 58.745 42.308 0.00 0.00 0.00 4.09
6846 8321 7.159322 TCCGTCTCATAATATAAGAAGAGCC 57.841 40.000 0.00 0.00 0.00 4.70
6848 8323 7.451877 TCCGTCTCATAATATAAGAAGAGCCTT 59.548 37.037 0.00 0.00 0.00 4.35
6849 8324 8.091449 CCGTCTCATAATATAAGAAGAGCCTTT 58.909 37.037 0.00 0.00 0.00 3.11
6850 8325 9.482627 CGTCTCATAATATAAGAAGAGCCTTTT 57.517 33.333 0.00 0.00 0.00 2.27
6882 8357 9.297586 CACTAGTGTCAAAAACGCTCTTATATA 57.702 33.333 15.06 0.00 45.69 0.86
6895 8370 8.921353 ACGCTCTTATATATTATAGGACGGAT 57.079 34.615 0.00 0.00 0.00 4.18
6931 8406 1.129811 GTGCCGTGTTACTGGTTATGC 59.870 52.381 0.00 0.00 0.00 3.14
6955 8430 1.888018 CTCCTTGCTTGCCATGGTG 59.112 57.895 14.67 5.41 39.25 4.17
6956 8431 2.221906 CTCCTTGCTTGCCATGGTGC 62.222 60.000 14.67 15.53 39.25 5.01
6983 8458 0.244450 AACATGCCATTTGCTCGTGG 59.756 50.000 0.00 0.00 42.00 4.94
7017 8502 8.663025 GTTCATATGACTATATGCACCATTGAG 58.337 37.037 4.48 0.00 43.77 3.02
7047 8532 6.414732 TCTTACTGTTATCCTGGGTCAAATG 58.585 40.000 0.00 0.00 0.00 2.32
7048 8533 3.356290 ACTGTTATCCTGGGTCAAATGC 58.644 45.455 0.00 0.00 0.00 3.56
7093 8578 3.369451 GTGAAGAGAAACGGAGAGAATGC 59.631 47.826 0.00 0.00 0.00 3.56
7170 8655 2.233186 GCTCTGGAAGTTACCTTACGGT 59.767 50.000 0.00 0.00 38.79 4.83
7172 8657 2.564062 TCTGGAAGTTACCTTACGGTGG 59.436 50.000 0.10 0.00 38.79 4.61
7174 8659 2.037511 TGGAAGTTACCTTACGGTGGTG 59.962 50.000 0.10 0.00 45.18 4.17
7184 8669 4.255301 CCTTACGGTGGTGCTGTATTTTA 58.745 43.478 0.00 0.00 38.61 1.52
7185 8670 4.879545 CCTTACGGTGGTGCTGTATTTTAT 59.120 41.667 0.00 0.00 38.61 1.40
7186 8671 5.355910 CCTTACGGTGGTGCTGTATTTTATT 59.644 40.000 0.00 0.00 38.61 1.40
7187 8672 6.127842 CCTTACGGTGGTGCTGTATTTTATTT 60.128 38.462 0.00 0.00 38.61 1.40
7188 8673 5.715434 ACGGTGGTGCTGTATTTTATTTT 57.285 34.783 0.00 0.00 34.32 1.82
7189 8674 6.821031 ACGGTGGTGCTGTATTTTATTTTA 57.179 33.333 0.00 0.00 34.32 1.52
7190 8675 7.399245 ACGGTGGTGCTGTATTTTATTTTAT 57.601 32.000 0.00 0.00 34.32 1.40
7191 8676 7.832769 ACGGTGGTGCTGTATTTTATTTTATT 58.167 30.769 0.00 0.00 34.32 1.40
7192 8677 8.308207 ACGGTGGTGCTGTATTTTATTTTATTT 58.692 29.630 0.00 0.00 34.32 1.40
7193 8678 9.145865 CGGTGGTGCTGTATTTTATTTTATTTT 57.854 29.630 0.00 0.00 0.00 1.82
7209 8694 8.833976 ATTTTATTTTTGAAACGTGGCAAAAG 57.166 26.923 20.78 0.00 42.71 2.27
7210 8695 7.596749 TTTATTTTTGAAACGTGGCAAAAGA 57.403 28.000 20.78 15.18 42.71 2.52
7211 8696 7.778470 TTATTTTTGAAACGTGGCAAAAGAT 57.222 28.000 20.78 18.75 42.71 2.40
7212 8697 6.676237 ATTTTTGAAACGTGGCAAAAGATT 57.324 29.167 20.78 12.15 42.71 2.40
7213 8698 6.487689 TTTTTGAAACGTGGCAAAAGATTT 57.512 29.167 20.78 0.00 42.71 2.17
7214 8699 5.462034 TTTGAAACGTGGCAAAAGATTTG 57.538 34.783 12.10 0.00 31.64 2.32
7215 8700 2.863137 TGAAACGTGGCAAAAGATTTGC 59.137 40.909 17.18 17.18 44.22 3.68
7216 8701 2.888834 AACGTGGCAAAAGATTTGCT 57.111 40.000 22.59 4.95 44.36 3.91
7217 8702 4.202060 TGAAACGTGGCAAAAGATTTGCTA 60.202 37.500 22.59 16.51 44.36 3.49
7218 8703 4.519540 AACGTGGCAAAAGATTTGCTAT 57.480 36.364 22.59 4.96 44.36 2.97
7219 8704 4.519540 ACGTGGCAAAAGATTTGCTATT 57.480 36.364 22.59 9.24 44.36 1.73
7220 8705 4.881920 ACGTGGCAAAAGATTTGCTATTT 58.118 34.783 22.59 8.95 44.36 1.40
7221 8706 5.296748 ACGTGGCAAAAGATTTGCTATTTT 58.703 33.333 22.59 6.93 44.36 1.82
7222 8707 5.757808 ACGTGGCAAAAGATTTGCTATTTTT 59.242 32.000 22.59 4.94 44.36 1.94
7223 8708 6.926272 ACGTGGCAAAAGATTTGCTATTTTTA 59.074 30.769 22.59 3.78 44.36 1.52
7224 8709 7.602265 ACGTGGCAAAAGATTTGCTATTTTTAT 59.398 29.630 22.59 3.15 44.36 1.40
7225 8710 8.442384 CGTGGCAAAAGATTTGCTATTTTTATT 58.558 29.630 22.59 0.00 44.36 1.40
7226 8711 9.545611 GTGGCAAAAGATTTGCTATTTTTATTG 57.454 29.630 22.59 0.00 44.36 1.90
7227 8712 9.499479 TGGCAAAAGATTTGCTATTTTTATTGA 57.501 25.926 22.59 0.00 44.36 2.57
7248 8733 8.585471 ATTGATTAAGAAGAAGAGAATTGCCA 57.415 30.769 0.00 0.00 0.00 4.92
7249 8734 7.621428 TGATTAAGAAGAAGAGAATTGCCAG 57.379 36.000 0.00 0.00 0.00 4.85
7250 8735 6.600822 TGATTAAGAAGAAGAGAATTGCCAGG 59.399 38.462 0.00 0.00 0.00 4.45
7251 8736 4.379302 AAGAAGAAGAGAATTGCCAGGT 57.621 40.909 0.00 0.00 0.00 4.00
7252 8737 4.379302 AGAAGAAGAGAATTGCCAGGTT 57.621 40.909 0.00 0.00 0.00 3.50
7253 8738 5.505181 AGAAGAAGAGAATTGCCAGGTTA 57.495 39.130 0.00 0.00 0.00 2.85
7254 8739 5.880901 AGAAGAAGAGAATTGCCAGGTTAA 58.119 37.500 0.00 0.00 0.00 2.01
7255 8740 6.488715 AGAAGAAGAGAATTGCCAGGTTAAT 58.511 36.000 0.00 0.00 0.00 1.40
7256 8741 6.950619 AGAAGAAGAGAATTGCCAGGTTAATT 59.049 34.615 4.12 4.12 0.00 1.40
7257 8742 6.521151 AGAAGAGAATTGCCAGGTTAATTG 57.479 37.500 8.14 0.00 0.00 2.32
7258 8743 6.248433 AGAAGAGAATTGCCAGGTTAATTGA 58.752 36.000 8.14 0.00 0.00 2.57
7259 8744 6.894103 AGAAGAGAATTGCCAGGTTAATTGAT 59.106 34.615 8.14 0.00 0.00 2.57
7260 8745 6.461110 AGAGAATTGCCAGGTTAATTGATG 57.539 37.500 8.14 0.00 0.00 3.07
7261 8746 6.189859 AGAGAATTGCCAGGTTAATTGATGA 58.810 36.000 8.14 0.00 0.00 2.92
7262 8747 6.664816 AGAGAATTGCCAGGTTAATTGATGAA 59.335 34.615 8.14 0.00 0.00 2.57
7263 8748 7.178983 AGAGAATTGCCAGGTTAATTGATGAAA 59.821 33.333 8.14 0.00 0.00 2.69
7264 8749 7.678837 AGAATTGCCAGGTTAATTGATGAAAA 58.321 30.769 8.14 0.00 0.00 2.29
7265 8750 8.156165 AGAATTGCCAGGTTAATTGATGAAAAA 58.844 29.630 8.14 0.00 0.00 1.94
7266 8751 7.671495 ATTGCCAGGTTAATTGATGAAAAAC 57.329 32.000 0.00 0.00 0.00 2.43
7267 8752 5.546526 TGCCAGGTTAATTGATGAAAAACC 58.453 37.500 4.90 4.90 39.92 3.27
7268 8753 4.625311 GCCAGGTTAATTGATGAAAAACCG 59.375 41.667 6.81 3.64 43.49 4.44
7269 8754 5.167845 CCAGGTTAATTGATGAAAAACCGG 58.832 41.667 0.00 0.00 43.49 5.28
7270 8755 5.167845 CAGGTTAATTGATGAAAAACCGGG 58.832 41.667 6.32 0.00 43.49 5.73
7271 8756 3.930229 GGTTAATTGATGAAAAACCGGGC 59.070 43.478 6.32 0.00 31.09 6.13
7272 8757 4.322424 GGTTAATTGATGAAAAACCGGGCT 60.322 41.667 6.32 0.00 31.09 5.19
7273 8758 5.105675 GGTTAATTGATGAAAAACCGGGCTA 60.106 40.000 6.32 0.00 31.09 3.93
7274 8759 6.391537 GTTAATTGATGAAAAACCGGGCTAA 58.608 36.000 6.32 0.00 0.00 3.09
7275 8760 5.476091 AATTGATGAAAAACCGGGCTAAA 57.524 34.783 6.32 0.00 0.00 1.85
7276 8761 4.939052 TTGATGAAAAACCGGGCTAAAA 57.061 36.364 6.32 0.00 0.00 1.52
7277 8762 4.245845 TGATGAAAAACCGGGCTAAAAC 57.754 40.909 6.32 0.00 0.00 2.43
7278 8763 3.006003 TGATGAAAAACCGGGCTAAAACC 59.994 43.478 6.32 0.00 0.00 3.27
7289 8774 3.602483 GGGCTAAAACCGATACAACTCA 58.398 45.455 0.00 0.00 0.00 3.41
7290 8775 4.004982 GGGCTAAAACCGATACAACTCAA 58.995 43.478 0.00 0.00 0.00 3.02
7291 8776 4.142752 GGGCTAAAACCGATACAACTCAAC 60.143 45.833 0.00 0.00 0.00 3.18
7292 8777 4.142752 GGCTAAAACCGATACAACTCAACC 60.143 45.833 0.00 0.00 0.00 3.77
7293 8778 4.142752 GCTAAAACCGATACAACTCAACCC 60.143 45.833 0.00 0.00 0.00 4.11
7294 8779 3.495434 AAACCGATACAACTCAACCCA 57.505 42.857 0.00 0.00 0.00 4.51
7295 8780 2.467566 ACCGATACAACTCAACCCAC 57.532 50.000 0.00 0.00 0.00 4.61
7296 8781 1.695242 ACCGATACAACTCAACCCACA 59.305 47.619 0.00 0.00 0.00 4.17
7297 8782 2.304761 ACCGATACAACTCAACCCACAT 59.695 45.455 0.00 0.00 0.00 3.21
7298 8783 2.677836 CCGATACAACTCAACCCACATG 59.322 50.000 0.00 0.00 0.00 3.21
7299 8784 3.595173 CGATACAACTCAACCCACATGA 58.405 45.455 0.00 0.00 0.00 3.07
7300 8785 3.370978 CGATACAACTCAACCCACATGAC 59.629 47.826 0.00 0.00 0.00 3.06
7301 8786 2.727123 ACAACTCAACCCACATGACA 57.273 45.000 0.00 0.00 0.00 3.58
7302 8787 3.228188 ACAACTCAACCCACATGACAT 57.772 42.857 0.00 0.00 0.00 3.06
7303 8788 2.886523 ACAACTCAACCCACATGACATG 59.113 45.455 14.02 14.02 0.00 3.21
7304 8789 2.205022 ACTCAACCCACATGACATGG 57.795 50.000 19.39 4.23 36.94 3.66
7305 8790 1.425066 ACTCAACCCACATGACATGGT 59.575 47.619 19.39 5.29 35.23 3.55
7306 8791 2.086869 CTCAACCCACATGACATGGTC 58.913 52.381 19.39 0.00 35.23 4.02
7307 8792 1.423161 TCAACCCACATGACATGGTCA 59.577 47.619 19.39 1.05 46.90 4.02
7308 8793 1.541147 CAACCCACATGACATGGTCAC 59.459 52.381 19.39 0.00 45.65 3.67
7309 8794 0.038166 ACCCACATGACATGGTCACC 59.962 55.000 19.39 0.00 45.65 4.02
7310 8795 0.038021 CCCACATGACATGGTCACCA 59.962 55.000 19.39 0.00 45.65 4.17
7311 8796 1.167851 CCACATGACATGGTCACCAC 58.832 55.000 19.39 0.00 45.65 4.16
7312 8797 1.167851 CACATGACATGGTCACCACC 58.832 55.000 19.39 0.00 45.65 4.61
7313 8798 0.321564 ACATGACATGGTCACCACCG 60.322 55.000 19.39 0.00 45.65 4.94
7314 8799 1.026182 CATGACATGGTCACCACCGG 61.026 60.000 0.00 0.00 45.65 5.28
7315 8800 2.819984 ATGACATGGTCACCACCGGC 62.820 60.000 0.00 0.00 45.65 6.13
7321 8806 4.265056 GTCACCACCGGCCAACCT 62.265 66.667 0.00 0.00 0.00 3.50
7322 8807 4.263572 TCACCACCGGCCAACCTG 62.264 66.667 0.00 0.00 0.00 4.00
7350 8835 4.674306 TGGGACACAAAGCTGCAA 57.326 50.000 1.02 0.00 0.00 4.08
7351 8836 2.893441 TGGGACACAAAGCTGCAAA 58.107 47.368 1.02 0.00 0.00 3.68
7352 8837 0.746063 TGGGACACAAAGCTGCAAAG 59.254 50.000 1.02 0.00 0.00 2.77
7353 8838 1.032014 GGGACACAAAGCTGCAAAGA 58.968 50.000 1.02 0.00 0.00 2.52
7354 8839 1.408702 GGGACACAAAGCTGCAAAGAA 59.591 47.619 1.02 0.00 0.00 2.52
7355 8840 2.544486 GGGACACAAAGCTGCAAAGAAG 60.544 50.000 1.02 0.00 0.00 2.85
7356 8841 2.544486 GGACACAAAGCTGCAAAGAAGG 60.544 50.000 1.02 0.00 0.00 3.46
7357 8842 1.202452 ACACAAAGCTGCAAAGAAGGC 60.202 47.619 1.02 0.00 0.00 4.35
7358 8843 1.113788 ACAAAGCTGCAAAGAAGGCA 58.886 45.000 1.02 0.00 39.32 4.75
7359 8844 1.690352 ACAAAGCTGCAAAGAAGGCAT 59.310 42.857 1.02 0.00 41.06 4.40
7360 8845 2.103601 ACAAAGCTGCAAAGAAGGCATT 59.896 40.909 1.02 0.00 41.06 3.56
7361 8846 3.135994 CAAAGCTGCAAAGAAGGCATTT 58.864 40.909 1.02 0.00 41.06 2.32
7362 8847 2.450609 AGCTGCAAAGAAGGCATTTG 57.549 45.000 1.02 5.73 41.06 2.32
7373 8858 4.301505 GCATTTGCCGAGGAGTCA 57.698 55.556 0.00 0.00 34.31 3.41
7374 8859 1.796796 GCATTTGCCGAGGAGTCAC 59.203 57.895 0.00 0.00 34.31 3.67
7375 8860 0.955428 GCATTTGCCGAGGAGTCACA 60.955 55.000 0.00 0.00 34.31 3.58
7376 8861 1.522668 CATTTGCCGAGGAGTCACAA 58.477 50.000 0.00 0.00 0.00 3.33
7377 8862 1.466167 CATTTGCCGAGGAGTCACAAG 59.534 52.381 0.00 0.00 0.00 3.16
7378 8863 0.884704 TTTGCCGAGGAGTCACAAGC 60.885 55.000 0.00 0.00 0.00 4.01
7379 8864 2.811317 GCCGAGGAGTCACAAGCG 60.811 66.667 0.00 0.00 0.00 4.68
7380 8865 2.651361 CCGAGGAGTCACAAGCGT 59.349 61.111 0.00 0.00 0.00 5.07
7381 8866 1.444553 CCGAGGAGTCACAAGCGTC 60.445 63.158 0.00 0.00 0.00 5.19
7382 8867 1.285950 CGAGGAGTCACAAGCGTCA 59.714 57.895 0.00 0.00 0.00 4.35
7383 8868 0.109086 CGAGGAGTCACAAGCGTCAT 60.109 55.000 0.00 0.00 0.00 3.06
7384 8869 1.634702 GAGGAGTCACAAGCGTCATC 58.365 55.000 0.00 0.00 0.00 2.92
7385 8870 0.109086 AGGAGTCACAAGCGTCATCG 60.109 55.000 0.00 0.00 40.37 3.84
7386 8871 0.388649 GGAGTCACAAGCGTCATCGT 60.389 55.000 0.00 0.00 39.49 3.73
7387 8872 0.985549 GAGTCACAAGCGTCATCGTC 59.014 55.000 0.00 0.00 39.49 4.20
7388 8873 0.313987 AGTCACAAGCGTCATCGTCA 59.686 50.000 0.00 0.00 39.49 4.35
7389 8874 1.067565 AGTCACAAGCGTCATCGTCAT 60.068 47.619 0.00 0.00 39.49 3.06
7390 8875 1.321743 GTCACAAGCGTCATCGTCATC 59.678 52.381 0.00 0.00 39.49 2.92
7391 8876 1.067915 TCACAAGCGTCATCGTCATCA 60.068 47.619 0.00 0.00 39.49 3.07
7392 8877 1.059692 CACAAGCGTCATCGTCATCAC 59.940 52.381 0.00 0.00 39.49 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.097892 GGTTGTATCTAGTTTGCCCAATGG 59.902 45.833 0.00 0.00 0.00 3.16
5 6 4.097892 GGGTTGTATCTAGTTTGCCCAATG 59.902 45.833 0.00 0.00 35.15 2.82
6 7 4.264172 TGGGTTGTATCTAGTTTGCCCAAT 60.264 41.667 0.00 0.00 41.42 3.16
7 8 3.074687 TGGGTTGTATCTAGTTTGCCCAA 59.925 43.478 0.00 0.00 41.42 4.12
8 9 2.645297 TGGGTTGTATCTAGTTTGCCCA 59.355 45.455 0.00 0.00 42.03 5.36
9 10 3.359695 TGGGTTGTATCTAGTTTGCCC 57.640 47.619 0.00 0.00 35.59 5.36
10 11 7.122204 ACTTTAATGGGTTGTATCTAGTTTGCC 59.878 37.037 0.00 0.00 0.00 4.52
11 12 8.051901 ACTTTAATGGGTTGTATCTAGTTTGC 57.948 34.615 0.00 0.00 0.00 3.68
12 13 9.840427 CAACTTTAATGGGTTGTATCTAGTTTG 57.160 33.333 0.00 0.00 38.27 2.93
23 24 9.751542 TTAACATACAACAACTTTAATGGGTTG 57.248 29.630 18.33 18.33 45.55 3.77
24 25 9.974980 CTTAACATACAACAACTTTAATGGGTT 57.025 29.630 0.00 0.00 0.00 4.11
25 26 8.581578 CCTTAACATACAACAACTTTAATGGGT 58.418 33.333 0.00 0.00 0.00 4.51
26 27 8.581578 ACCTTAACATACAACAACTTTAATGGG 58.418 33.333 0.00 0.00 0.00 4.00
27 28 9.405587 CACCTTAACATACAACAACTTTAATGG 57.594 33.333 0.00 0.00 0.00 3.16
28 29 9.959749 ACACCTTAACATACAACAACTTTAATG 57.040 29.630 0.00 0.00 0.00 1.90
30 31 9.790389 CAACACCTTAACATACAACAACTTTAA 57.210 29.630 0.00 0.00 0.00 1.52
31 32 9.175312 TCAACACCTTAACATACAACAACTTTA 57.825 29.630 0.00 0.00 0.00 1.85
32 33 8.057536 TCAACACCTTAACATACAACAACTTT 57.942 30.769 0.00 0.00 0.00 2.66
33 34 7.633193 TCAACACCTTAACATACAACAACTT 57.367 32.000 0.00 0.00 0.00 2.66
34 35 7.817418 ATCAACACCTTAACATACAACAACT 57.183 32.000 0.00 0.00 0.00 3.16
35 36 8.132362 TCAATCAACACCTTAACATACAACAAC 58.868 33.333 0.00 0.00 0.00 3.32
36 37 8.226819 TCAATCAACACCTTAACATACAACAA 57.773 30.769 0.00 0.00 0.00 2.83
37 38 7.809546 TCAATCAACACCTTAACATACAACA 57.190 32.000 0.00 0.00 0.00 3.33
38 39 8.511321 TCATCAATCAACACCTTAACATACAAC 58.489 33.333 0.00 0.00 0.00 3.32
39 40 8.511321 GTCATCAATCAACACCTTAACATACAA 58.489 33.333 0.00 0.00 0.00 2.41
40 41 7.663493 TGTCATCAATCAACACCTTAACATACA 59.337 33.333 0.00 0.00 0.00 2.29
41 42 8.039603 TGTCATCAATCAACACCTTAACATAC 57.960 34.615 0.00 0.00 0.00 2.39
42 43 8.676401 CATGTCATCAATCAACACCTTAACATA 58.324 33.333 0.00 0.00 0.00 2.29
43 44 7.394077 TCATGTCATCAATCAACACCTTAACAT 59.606 33.333 0.00 0.00 0.00 2.71
44 45 6.714356 TCATGTCATCAATCAACACCTTAACA 59.286 34.615 0.00 0.00 0.00 2.41
45 46 7.023575 GTCATGTCATCAATCAACACCTTAAC 58.976 38.462 0.00 0.00 0.00 2.01
46 47 6.714356 TGTCATGTCATCAATCAACACCTTAA 59.286 34.615 0.00 0.00 0.00 1.85
47 48 6.237154 TGTCATGTCATCAATCAACACCTTA 58.763 36.000 0.00 0.00 0.00 2.69
48 49 5.072055 TGTCATGTCATCAATCAACACCTT 58.928 37.500 0.00 0.00 0.00 3.50
49 50 4.654915 TGTCATGTCATCAATCAACACCT 58.345 39.130 0.00 0.00 0.00 4.00
50 51 5.571784 ATGTCATGTCATCAATCAACACC 57.428 39.130 0.00 0.00 0.00 4.16
51 52 9.577110 AAAATATGTCATGTCATCAATCAACAC 57.423 29.630 8.77 0.00 0.00 3.32
84 85 9.113838 CATCTCCAATAGTTTGTATGTTAGCTT 57.886 33.333 0.00 0.00 0.00 3.74
85 86 8.267894 ACATCTCCAATAGTTTGTATGTTAGCT 58.732 33.333 0.00 0.00 30.69 3.32
86 87 8.438676 ACATCTCCAATAGTTTGTATGTTAGC 57.561 34.615 0.00 0.00 30.69 3.09
87 88 9.046296 GGACATCTCCAATAGTTTGTATGTTAG 57.954 37.037 0.00 0.00 36.42 2.34
88 89 8.768397 AGGACATCTCCAATAGTTTGTATGTTA 58.232 33.333 0.00 0.00 39.39 2.41
89 90 7.633789 AGGACATCTCCAATAGTTTGTATGTT 58.366 34.615 0.00 0.00 39.39 2.71
90 91 7.200434 AGGACATCTCCAATAGTTTGTATGT 57.800 36.000 0.00 0.00 39.39 2.29
91 92 9.613428 TTTAGGACATCTCCAATAGTTTGTATG 57.387 33.333 0.00 0.00 39.39 2.39
94 95 8.934023 TTTTTAGGACATCTCCAATAGTTTGT 57.066 30.769 0.00 0.00 39.39 2.83
95 96 9.014297 ACTTTTTAGGACATCTCCAATAGTTTG 57.986 33.333 0.00 0.00 39.39 2.93
96 97 9.588096 AACTTTTTAGGACATCTCCAATAGTTT 57.412 29.630 0.00 0.00 39.39 2.66
100 101 9.158233 CGTTAACTTTTTAGGACATCTCCAATA 57.842 33.333 3.71 0.00 39.39 1.90
101 102 7.881232 TCGTTAACTTTTTAGGACATCTCCAAT 59.119 33.333 3.71 0.00 39.39 3.16
102 103 7.172019 GTCGTTAACTTTTTAGGACATCTCCAA 59.828 37.037 3.71 0.00 39.39 3.53
103 104 6.647895 GTCGTTAACTTTTTAGGACATCTCCA 59.352 38.462 3.71 0.00 39.39 3.86
104 105 6.647895 TGTCGTTAACTTTTTAGGACATCTCC 59.352 38.462 3.71 0.00 32.14 3.71
105 106 7.647907 TGTCGTTAACTTTTTAGGACATCTC 57.352 36.000 3.71 0.00 32.14 2.75
106 107 7.929785 TCTTGTCGTTAACTTTTTAGGACATCT 59.070 33.333 3.71 0.00 34.79 2.90
107 108 8.080083 TCTTGTCGTTAACTTTTTAGGACATC 57.920 34.615 3.71 0.00 34.79 3.06
108 109 8.504005 CATCTTGTCGTTAACTTTTTAGGACAT 58.496 33.333 3.71 0.00 34.79 3.06
109 110 7.041644 CCATCTTGTCGTTAACTTTTTAGGACA 60.042 37.037 3.71 5.22 33.80 4.02
110 111 7.041576 ACCATCTTGTCGTTAACTTTTTAGGAC 60.042 37.037 3.71 2.64 0.00 3.85
111 112 6.993902 ACCATCTTGTCGTTAACTTTTTAGGA 59.006 34.615 3.71 0.00 0.00 2.94
112 113 7.198306 ACCATCTTGTCGTTAACTTTTTAGG 57.802 36.000 3.71 0.00 0.00 2.69
113 114 9.199982 TCTACCATCTTGTCGTTAACTTTTTAG 57.800 33.333 3.71 0.00 0.00 1.85
114 115 9.715121 ATCTACCATCTTGTCGTTAACTTTTTA 57.285 29.630 3.71 0.00 0.00 1.52
115 116 8.504005 CATCTACCATCTTGTCGTTAACTTTTT 58.496 33.333 3.71 0.00 0.00 1.94
116 117 7.119262 CCATCTACCATCTTGTCGTTAACTTTT 59.881 37.037 3.71 0.00 0.00 2.27
117 118 6.594159 CCATCTACCATCTTGTCGTTAACTTT 59.406 38.462 3.71 0.00 0.00 2.66
118 119 6.106673 CCATCTACCATCTTGTCGTTAACTT 58.893 40.000 3.71 0.00 0.00 2.66
206 207 3.279434 CAAGACCGGGAAAAGGATAAGG 58.721 50.000 6.32 0.00 0.00 2.69
207 208 3.689649 CACAAGACCGGGAAAAGGATAAG 59.310 47.826 6.32 0.00 0.00 1.73
208 209 3.328343 TCACAAGACCGGGAAAAGGATAA 59.672 43.478 6.32 0.00 0.00 1.75
209 210 2.907696 TCACAAGACCGGGAAAAGGATA 59.092 45.455 6.32 0.00 0.00 2.59
210 211 1.702957 TCACAAGACCGGGAAAAGGAT 59.297 47.619 6.32 0.00 0.00 3.24
211 212 1.133363 TCACAAGACCGGGAAAAGGA 58.867 50.000 6.32 0.00 0.00 3.36
368 369 4.451150 GACGGTCGGGATGCTGCA 62.451 66.667 4.13 4.13 0.00 4.41
380 381 2.590114 GCTTGGGTAGGTGGACGGT 61.590 63.158 0.00 0.00 0.00 4.83
393 394 2.263741 GGAGGTGCTGTGTGCTTGG 61.264 63.158 0.00 0.00 43.37 3.61
411 412 1.152139 GGAGAGGGAGGATGGAGGG 60.152 68.421 0.00 0.00 0.00 4.30
418 419 1.392534 GTGGGAAGGAGAGGGAGGA 59.607 63.158 0.00 0.00 0.00 3.71
435 462 2.561569 GCTGTGTACTTGTGGTCTTGT 58.438 47.619 0.00 0.00 0.00 3.16
438 465 0.600255 GCGCTGTGTACTTGTGGTCT 60.600 55.000 0.00 0.00 0.00 3.85
439 466 1.566018 GGCGCTGTGTACTTGTGGTC 61.566 60.000 7.64 0.00 0.00 4.02
440 467 1.597027 GGCGCTGTGTACTTGTGGT 60.597 57.895 7.64 0.00 0.00 4.16
441 468 2.325082 GGGCGCTGTGTACTTGTGG 61.325 63.158 7.64 0.00 0.00 4.17
442 469 1.596752 TGGGCGCTGTGTACTTGTG 60.597 57.895 7.64 0.00 0.00 3.33
443 470 1.597027 GTGGGCGCTGTGTACTTGT 60.597 57.895 7.64 0.00 0.00 3.16
535 569 2.446802 GCAGGGGTCTAGGGAGGG 60.447 72.222 0.00 0.00 0.00 4.30
551 585 2.843701 CCAGAGAGAGAGAGAGAGAGC 58.156 57.143 0.00 0.00 0.00 4.09
552 586 2.486191 GGCCAGAGAGAGAGAGAGAGAG 60.486 59.091 0.00 0.00 0.00 3.20
553 587 1.490490 GGCCAGAGAGAGAGAGAGAGA 59.510 57.143 0.00 0.00 0.00 3.10
570 604 1.810853 GGTGCATGCGAAATTGGCC 60.811 57.895 14.09 0.00 0.00 5.36
603 637 0.548510 GGGGTTCTTGATCCTGGAGG 59.451 60.000 1.52 0.00 0.00 4.30
971 1005 2.724708 GCTCACAAGCGCTCTCACG 61.725 63.158 12.06 0.34 39.10 4.35
1025 1059 3.637273 GCTCCCACAAGTCCGGGT 61.637 66.667 0.00 0.00 43.57 5.28
1039 1073 0.811915 TCGTAGTGGCAGAAGAGCTC 59.188 55.000 5.27 5.27 34.17 4.09
1154 1188 1.545841 AAATCAAAGGAACGGGGAGC 58.454 50.000 0.00 0.00 0.00 4.70
1164 1198 2.224744 CCCCAACCCCAAAAATCAAAGG 60.225 50.000 0.00 0.00 0.00 3.11
1239 1288 7.863375 TGTATTGGAAGACGGTAAAACAAATTG 59.137 33.333 0.00 0.00 0.00 2.32
1310 1359 0.692419 CAGCCCTCCCTAGACACCAT 60.692 60.000 0.00 0.00 0.00 3.55
1311 1360 1.306141 CAGCCCTCCCTAGACACCA 60.306 63.158 0.00 0.00 0.00 4.17
1312 1361 1.306226 ACAGCCCTCCCTAGACACC 60.306 63.158 0.00 0.00 0.00 4.16
1313 1362 1.901085 CACAGCCCTCCCTAGACAC 59.099 63.158 0.00 0.00 0.00 3.67
1314 1363 1.990060 GCACAGCCCTCCCTAGACA 60.990 63.158 0.00 0.00 0.00 3.41
1315 1364 2.904131 GCACAGCCCTCCCTAGAC 59.096 66.667 0.00 0.00 0.00 2.59
1316 1365 2.759973 CGCACAGCCCTCCCTAGA 60.760 66.667 0.00 0.00 0.00 2.43
1317 1366 2.759973 TCGCACAGCCCTCCCTAG 60.760 66.667 0.00 0.00 0.00 3.02
1318 1367 3.075005 GTCGCACAGCCCTCCCTA 61.075 66.667 0.00 0.00 0.00 3.53
1327 1376 3.215597 TACCCACACCGTCGCACAG 62.216 63.158 0.00 0.00 0.00 3.66
1328 1377 3.215597 CTACCCACACCGTCGCACA 62.216 63.158 0.00 0.00 0.00 4.57
1329 1378 2.431942 CTACCCACACCGTCGCAC 60.432 66.667 0.00 0.00 0.00 5.34
1331 1380 2.431942 CACTACCCACACCGTCGC 60.432 66.667 0.00 0.00 0.00 5.19
1332 1381 2.260434 CCACTACCCACACCGTCG 59.740 66.667 0.00 0.00 0.00 5.12
1333 1382 2.212110 ACCCACTACCCACACCGTC 61.212 63.158 0.00 0.00 0.00 4.79
1334 1383 2.122725 ACCCACTACCCACACCGT 60.123 61.111 0.00 0.00 0.00 4.83
1335 1384 2.345991 CACCCACTACCCACACCG 59.654 66.667 0.00 0.00 0.00 4.94
1336 1385 1.072505 CACACCCACTACCCACACC 59.927 63.158 0.00 0.00 0.00 4.16
1338 1387 0.691413 TGACACACCCACTACCCACA 60.691 55.000 0.00 0.00 0.00 4.17
1339 1388 0.034896 CTGACACACCCACTACCCAC 59.965 60.000 0.00 0.00 0.00 4.61
1341 1390 0.034896 CACTGACACACCCACTACCC 59.965 60.000 0.00 0.00 0.00 3.69
1342 1391 1.000955 CTCACTGACACACCCACTACC 59.999 57.143 0.00 0.00 0.00 3.18
1344 1393 1.338107 CCTCACTGACACACCCACTA 58.662 55.000 0.00 0.00 0.00 2.74
1345 1394 2.044806 GCCTCACTGACACACCCACT 62.045 60.000 0.00 0.00 0.00 4.00
1347 1396 1.766059 AGCCTCACTGACACACCCA 60.766 57.895 0.00 0.00 0.00 4.51
1348 1397 3.151906 AGCCTCACTGACACACCC 58.848 61.111 0.00 0.00 0.00 4.61
1357 1406 2.279069 CCCACTCGTCAGCCTCACT 61.279 63.158 0.00 0.00 0.00 3.41
1358 1407 2.262915 CCCACTCGTCAGCCTCAC 59.737 66.667 0.00 0.00 0.00 3.51
1359 1408 3.695606 GCCCACTCGTCAGCCTCA 61.696 66.667 0.00 0.00 0.00 3.86
1360 1409 4.459089 GGCCCACTCGTCAGCCTC 62.459 72.222 0.00 0.00 42.34 4.70
1380 1429 4.830765 TGTATCGCACAGCCCGCC 62.831 66.667 0.00 0.00 31.89 6.13
1381 1430 3.564027 GTGTATCGCACAGCCCGC 61.564 66.667 0.00 0.00 46.91 6.13
1389 1438 2.605818 GGCGTCTTTTATGTGTATCGCA 59.394 45.455 0.00 0.00 43.31 5.10
1390 1439 2.033151 GGGCGTCTTTTATGTGTATCGC 60.033 50.000 0.00 0.00 41.32 4.58
1568 1620 2.159421 TCGATGTTGGAGCGAACTCTAC 60.159 50.000 0.00 0.00 40.17 2.59
1645 1697 8.477419 AACATGGGTTGGTAATCCTATTATTG 57.523 34.615 0.00 0.00 35.46 1.90
1660 1712 2.629639 GCCTTACGAAACATGGGTTG 57.370 50.000 0.00 0.00 37.30 3.77
1757 1809 5.583457 GCCAATGAATCATTTCCTTTTCCTG 59.417 40.000 5.63 0.00 31.05 3.86
1895 1947 5.238583 ACAACATCTGAAGTACCTTACTGC 58.761 41.667 0.00 0.00 39.39 4.40
1914 1966 6.090088 TGAAAGCAAAATACACACACAACAAC 59.910 34.615 0.00 0.00 0.00 3.32
1928 1980 9.603921 CAATGGGAGTATATTTGAAAGCAAAAT 57.396 29.630 0.00 0.00 46.19 1.82
6264 7730 1.296715 GAACCACCTGATCAGCGGT 59.703 57.895 22.84 22.84 35.15 5.68
6305 7771 4.733077 TGGATTTGAAGGAGGTAAACCA 57.267 40.909 1.26 0.00 38.89 3.67
6370 7836 1.890008 TTCGTCGTCGTCGTCGTCAT 61.890 55.000 18.44 0.00 45.27 3.06
6371 7837 1.890008 ATTCGTCGTCGTCGTCGTCA 61.890 55.000 18.44 9.34 45.27 4.35
6372 7838 1.225583 ATTCGTCGTCGTCGTCGTC 60.226 57.895 18.44 5.52 45.27 4.20
6373 7839 1.508539 CATTCGTCGTCGTCGTCGT 60.509 57.895 18.44 1.12 45.27 4.34
6374 7840 0.786806 TTCATTCGTCGTCGTCGTCG 60.787 55.000 14.18 14.18 46.06 5.12
6375 7841 0.627307 GTTCATTCGTCGTCGTCGTC 59.373 55.000 11.41 0.00 38.33 4.20
6419 7889 5.888161 ACCAGCAGTTTAATCCAGAATAAGG 59.112 40.000 0.00 0.00 0.00 2.69
6442 7912 5.793030 ACCTATCTATGGTAAGCACTGAC 57.207 43.478 0.00 0.00 35.80 3.51
6489 7960 3.181483 GCCTCCACAGCAGAATTTAATGG 60.181 47.826 0.00 0.00 0.00 3.16
6638 8113 7.926555 CACCGTCTCACAAAATATTACTCCTAT 59.073 37.037 0.00 0.00 0.00 2.57
6641 8116 5.293569 CCACCGTCTCACAAAATATTACTCC 59.706 44.000 0.00 0.00 0.00 3.85
6642 8117 5.220605 GCCACCGTCTCACAAAATATTACTC 60.221 44.000 0.00 0.00 0.00 2.59
6643 8118 4.634443 GCCACCGTCTCACAAAATATTACT 59.366 41.667 0.00 0.00 0.00 2.24
6644 8119 4.201881 GGCCACCGTCTCACAAAATATTAC 60.202 45.833 0.00 0.00 0.00 1.89
6645 8120 3.942748 GGCCACCGTCTCACAAAATATTA 59.057 43.478 0.00 0.00 0.00 0.98
6646 8121 2.752903 GGCCACCGTCTCACAAAATATT 59.247 45.455 0.00 0.00 0.00 1.28
6647 8122 2.026262 AGGCCACCGTCTCACAAAATAT 60.026 45.455 5.01 0.00 0.00 1.28
6648 8123 1.349688 AGGCCACCGTCTCACAAAATA 59.650 47.619 5.01 0.00 0.00 1.40
6649 8124 0.110486 AGGCCACCGTCTCACAAAAT 59.890 50.000 5.01 0.00 0.00 1.82
6694 8169 5.047943 AGCGAGTACAACAAGTCTCAACTAT 60.048 40.000 0.00 0.00 33.48 2.12
6741 8216 6.808008 TTTCTCGAAGCAAGAAGAATGATT 57.192 33.333 0.00 0.00 34.42 2.57
6784 8259 6.534793 GGAGCAACAATAACCAATTTACCATG 59.465 38.462 0.00 0.00 0.00 3.66
6785 8260 6.440328 AGGAGCAACAATAACCAATTTACCAT 59.560 34.615 0.00 0.00 0.00 3.55
6810 8285 1.844497 TGAGACGGAGGGAGTAGATGA 59.156 52.381 0.00 0.00 0.00 2.92
6830 8305 9.343539 GGTGTCAAAAGGCTCTTCTTATATTAT 57.656 33.333 0.00 0.00 0.00 1.28
6841 8316 2.706190 ACTAGTGGTGTCAAAAGGCTCT 59.294 45.455 0.00 0.00 0.00 4.09
6842 8317 2.808543 CACTAGTGGTGTCAAAAGGCTC 59.191 50.000 15.49 0.00 40.79 4.70
6843 8318 2.851195 CACTAGTGGTGTCAAAAGGCT 58.149 47.619 15.49 0.00 40.79 4.58
6855 8330 3.131396 AGAGCGTTTTTGACACTAGTGG 58.869 45.455 26.12 9.07 34.19 4.00
6882 8357 5.006896 TGGTACTCCATCCGTCCTATAAT 57.993 43.478 0.00 0.00 39.03 1.28
6883 8358 4.458256 TGGTACTCCATCCGTCCTATAA 57.542 45.455 0.00 0.00 39.03 0.98
6955 8430 3.607542 GCAAATGGCATGTTCACAAAAGC 60.608 43.478 0.00 0.00 43.97 3.51
6956 8431 4.136517 GCAAATGGCATGTTCACAAAAG 57.863 40.909 0.00 0.00 43.97 2.27
7017 8502 4.999950 CCCAGGATAACAGTAAGATGCATC 59.000 45.833 19.37 19.37 0.00 3.91
7047 8532 2.456119 CGTTCCCATGCTCGTCTGC 61.456 63.158 0.00 0.00 0.00 4.26
7048 8533 1.811266 CCGTTCCCATGCTCGTCTG 60.811 63.158 0.00 0.00 0.00 3.51
7093 8578 1.446792 AGCGAGCATGTTCAGTCCG 60.447 57.895 10.36 0.00 0.00 4.79
7097 8582 3.363128 CGTATATCAGCGAGCATGTTCAG 59.637 47.826 10.36 4.00 0.00 3.02
7184 8669 8.669243 TCTTTTGCCACGTTTCAAAAATAAAAT 58.331 25.926 19.15 0.00 40.36 1.82
7185 8670 8.029642 TCTTTTGCCACGTTTCAAAAATAAAA 57.970 26.923 19.15 3.80 40.36 1.52
7186 8671 7.596749 TCTTTTGCCACGTTTCAAAAATAAA 57.403 28.000 19.15 8.13 40.36 1.40
7187 8672 7.778470 ATCTTTTGCCACGTTTCAAAAATAA 57.222 28.000 19.15 11.74 40.36 1.40
7188 8673 7.778470 AATCTTTTGCCACGTTTCAAAAATA 57.222 28.000 19.15 13.41 40.36 1.40
7189 8674 6.676237 AATCTTTTGCCACGTTTCAAAAAT 57.324 29.167 19.15 14.31 40.36 1.82
7190 8675 6.310197 CAAATCTTTTGCCACGTTTCAAAAA 58.690 32.000 19.15 13.23 40.36 1.94
7191 8676 5.672321 GCAAATCTTTTGCCACGTTTCAAAA 60.672 36.000 18.17 18.17 39.13 2.44
7192 8677 4.201763 GCAAATCTTTTGCCACGTTTCAAA 60.202 37.500 12.74 7.63 39.38 2.69
7193 8678 3.308323 GCAAATCTTTTGCCACGTTTCAA 59.692 39.130 12.74 0.00 39.38 2.69
7194 8679 2.863137 GCAAATCTTTTGCCACGTTTCA 59.137 40.909 12.74 0.00 39.38 2.69
7195 8680 3.123050 AGCAAATCTTTTGCCACGTTTC 58.877 40.909 18.48 0.00 45.98 2.78
7196 8681 3.177997 AGCAAATCTTTTGCCACGTTT 57.822 38.095 18.48 0.00 45.98 3.60
7197 8682 2.888834 AGCAAATCTTTTGCCACGTT 57.111 40.000 18.48 0.54 45.98 3.99
7198 8683 4.519540 AATAGCAAATCTTTTGCCACGT 57.480 36.364 18.48 5.72 45.98 4.49
7199 8684 5.844301 AAAATAGCAAATCTTTTGCCACG 57.156 34.783 18.48 0.00 45.98 4.94
7200 8685 9.545611 CAATAAAAATAGCAAATCTTTTGCCAC 57.454 29.630 18.48 0.00 45.98 5.01
7201 8686 9.499479 TCAATAAAAATAGCAAATCTTTTGCCA 57.501 25.926 18.48 8.22 45.98 4.92
7222 8707 9.685276 TGGCAATTCTCTTCTTCTTAATCAATA 57.315 29.630 0.00 0.00 0.00 1.90
7223 8708 8.585471 TGGCAATTCTCTTCTTCTTAATCAAT 57.415 30.769 0.00 0.00 0.00 2.57
7224 8709 7.121759 CCTGGCAATTCTCTTCTTCTTAATCAA 59.878 37.037 0.00 0.00 0.00 2.57
7225 8710 6.600822 CCTGGCAATTCTCTTCTTCTTAATCA 59.399 38.462 0.00 0.00 0.00 2.57
7226 8711 6.601217 ACCTGGCAATTCTCTTCTTCTTAATC 59.399 38.462 0.00 0.00 0.00 1.75
7227 8712 6.488715 ACCTGGCAATTCTCTTCTTCTTAAT 58.511 36.000 0.00 0.00 0.00 1.40
7228 8713 5.880901 ACCTGGCAATTCTCTTCTTCTTAA 58.119 37.500 0.00 0.00 0.00 1.85
7229 8714 5.505181 ACCTGGCAATTCTCTTCTTCTTA 57.495 39.130 0.00 0.00 0.00 2.10
7230 8715 4.379302 ACCTGGCAATTCTCTTCTTCTT 57.621 40.909 0.00 0.00 0.00 2.52
7231 8716 4.379302 AACCTGGCAATTCTCTTCTTCT 57.621 40.909 0.00 0.00 0.00 2.85
7232 8717 6.765915 ATTAACCTGGCAATTCTCTTCTTC 57.234 37.500 0.00 0.00 0.00 2.87
7233 8718 6.721208 TCAATTAACCTGGCAATTCTCTTCTT 59.279 34.615 0.00 0.00 0.00 2.52
7234 8719 6.248433 TCAATTAACCTGGCAATTCTCTTCT 58.752 36.000 0.00 0.00 0.00 2.85
7235 8720 6.515272 TCAATTAACCTGGCAATTCTCTTC 57.485 37.500 0.00 0.00 0.00 2.87
7236 8721 6.664816 TCATCAATTAACCTGGCAATTCTCTT 59.335 34.615 0.00 0.00 0.00 2.85
7237 8722 6.189859 TCATCAATTAACCTGGCAATTCTCT 58.810 36.000 0.00 0.00 0.00 3.10
7238 8723 6.455360 TCATCAATTAACCTGGCAATTCTC 57.545 37.500 0.00 0.00 0.00 2.87
7239 8724 6.855763 TTCATCAATTAACCTGGCAATTCT 57.144 33.333 0.00 0.00 0.00 2.40
7240 8725 7.903995 TTTTCATCAATTAACCTGGCAATTC 57.096 32.000 0.00 0.00 0.00 2.17
7241 8726 7.174772 GGTTTTTCATCAATTAACCTGGCAATT 59.825 33.333 0.00 0.00 36.25 2.32
7242 8727 6.654582 GGTTTTTCATCAATTAACCTGGCAAT 59.345 34.615 0.00 0.00 36.25 3.56
7243 8728 5.994668 GGTTTTTCATCAATTAACCTGGCAA 59.005 36.000 0.00 0.00 36.25 4.52
7244 8729 5.546526 GGTTTTTCATCAATTAACCTGGCA 58.453 37.500 0.00 0.00 36.25 4.92
7245 8730 4.625311 CGGTTTTTCATCAATTAACCTGGC 59.375 41.667 0.00 0.00 36.86 4.85
7246 8731 5.167845 CCGGTTTTTCATCAATTAACCTGG 58.832 41.667 0.00 0.00 36.86 4.45
7247 8732 5.167845 CCCGGTTTTTCATCAATTAACCTG 58.832 41.667 0.00 0.00 36.86 4.00
7248 8733 4.322424 GCCCGGTTTTTCATCAATTAACCT 60.322 41.667 0.00 0.00 36.86 3.50
7249 8734 3.930229 GCCCGGTTTTTCATCAATTAACC 59.070 43.478 0.00 0.00 35.91 2.85
7250 8735 4.816392 AGCCCGGTTTTTCATCAATTAAC 58.184 39.130 0.00 0.00 0.00 2.01
7251 8736 6.591750 TTAGCCCGGTTTTTCATCAATTAA 57.408 33.333 0.00 0.00 0.00 1.40
7252 8737 6.591750 TTTAGCCCGGTTTTTCATCAATTA 57.408 33.333 0.00 0.00 0.00 1.40
7253 8738 5.476091 TTTAGCCCGGTTTTTCATCAATT 57.524 34.783 0.00 0.00 0.00 2.32
7254 8739 5.234752 GTTTTAGCCCGGTTTTTCATCAAT 58.765 37.500 0.00 0.00 0.00 2.57
7255 8740 4.501743 GGTTTTAGCCCGGTTTTTCATCAA 60.502 41.667 0.00 0.00 0.00 2.57
7256 8741 3.006003 GGTTTTAGCCCGGTTTTTCATCA 59.994 43.478 0.00 0.00 0.00 3.07
7257 8742 3.581755 GGTTTTAGCCCGGTTTTTCATC 58.418 45.455 0.00 0.00 0.00 2.92
7258 8743 2.029739 CGGTTTTAGCCCGGTTTTTCAT 60.030 45.455 0.00 0.00 41.78 2.57
7259 8744 1.337387 CGGTTTTAGCCCGGTTTTTCA 59.663 47.619 0.00 0.00 41.78 2.69
7260 8745 1.608109 TCGGTTTTAGCCCGGTTTTTC 59.392 47.619 0.00 0.00 45.51 2.29
7261 8746 1.689984 TCGGTTTTAGCCCGGTTTTT 58.310 45.000 0.00 0.00 45.51 1.94
7262 8747 1.913778 ATCGGTTTTAGCCCGGTTTT 58.086 45.000 0.00 0.00 45.51 2.43
7263 8748 2.290197 TGTATCGGTTTTAGCCCGGTTT 60.290 45.455 0.00 0.00 45.51 3.27
7264 8749 1.278699 TGTATCGGTTTTAGCCCGGTT 59.721 47.619 0.00 0.00 45.51 4.44
7265 8750 0.903942 TGTATCGGTTTTAGCCCGGT 59.096 50.000 0.00 0.00 45.51 5.28
7266 8751 1.667212 GTTGTATCGGTTTTAGCCCGG 59.333 52.381 0.00 0.00 45.51 5.73
7267 8752 2.606272 GAGTTGTATCGGTTTTAGCCCG 59.394 50.000 0.00 0.00 46.83 6.13
7268 8753 3.602483 TGAGTTGTATCGGTTTTAGCCC 58.398 45.455 0.00 0.00 0.00 5.19
7269 8754 4.142752 GGTTGAGTTGTATCGGTTTTAGCC 60.143 45.833 0.00 0.00 0.00 3.93
7270 8755 4.142752 GGGTTGAGTTGTATCGGTTTTAGC 60.143 45.833 0.00 0.00 0.00 3.09
7271 8756 4.998672 TGGGTTGAGTTGTATCGGTTTTAG 59.001 41.667 0.00 0.00 0.00 1.85
7272 8757 4.756135 GTGGGTTGAGTTGTATCGGTTTTA 59.244 41.667 0.00 0.00 0.00 1.52
7273 8758 3.566742 GTGGGTTGAGTTGTATCGGTTTT 59.433 43.478 0.00 0.00 0.00 2.43
7274 8759 3.143728 GTGGGTTGAGTTGTATCGGTTT 58.856 45.455 0.00 0.00 0.00 3.27
7275 8760 2.105134 TGTGGGTTGAGTTGTATCGGTT 59.895 45.455 0.00 0.00 0.00 4.44
7276 8761 1.695242 TGTGGGTTGAGTTGTATCGGT 59.305 47.619 0.00 0.00 0.00 4.69
7277 8762 2.465860 TGTGGGTTGAGTTGTATCGG 57.534 50.000 0.00 0.00 0.00 4.18
7278 8763 3.370978 GTCATGTGGGTTGAGTTGTATCG 59.629 47.826 0.00 0.00 0.00 2.92
7279 8764 4.323417 TGTCATGTGGGTTGAGTTGTATC 58.677 43.478 0.00 0.00 0.00 2.24
7280 8765 4.365514 TGTCATGTGGGTTGAGTTGTAT 57.634 40.909 0.00 0.00 0.00 2.29
7281 8766 3.847671 TGTCATGTGGGTTGAGTTGTA 57.152 42.857 0.00 0.00 0.00 2.41
7282 8767 2.727123 TGTCATGTGGGTTGAGTTGT 57.273 45.000 0.00 0.00 0.00 3.32
7283 8768 2.229543 CCATGTCATGTGGGTTGAGTTG 59.770 50.000 11.84 0.00 32.98 3.16
7284 8769 2.158475 ACCATGTCATGTGGGTTGAGTT 60.158 45.455 11.84 0.00 41.14 3.01
7285 8770 1.425066 ACCATGTCATGTGGGTTGAGT 59.575 47.619 11.84 0.00 41.14 3.41
7286 8771 2.086869 GACCATGTCATGTGGGTTGAG 58.913 52.381 11.84 0.00 41.14 3.02
7287 8772 1.423161 TGACCATGTCATGTGGGTTGA 59.577 47.619 11.84 0.00 41.14 3.18
7288 8773 1.541147 GTGACCATGTCATGTGGGTTG 59.459 52.381 11.84 0.00 44.63 3.77
7289 8774 1.547675 GGTGACCATGTCATGTGGGTT 60.548 52.381 11.84 0.00 44.63 4.11
7290 8775 0.038166 GGTGACCATGTCATGTGGGT 59.962 55.000 11.84 2.60 44.63 4.51
7291 8776 0.038021 TGGTGACCATGTCATGTGGG 59.962 55.000 11.84 0.00 44.63 4.61
7292 8777 1.167851 GTGGTGACCATGTCATGTGG 58.832 55.000 7.94 1.44 44.63 4.17
7293 8778 1.167851 GGTGGTGACCATGTCATGTG 58.832 55.000 7.94 6.00 44.63 3.21
7294 8779 0.321564 CGGTGGTGACCATGTCATGT 60.322 55.000 7.94 0.25 44.63 3.21
7295 8780 1.026182 CCGGTGGTGACCATGTCATG 61.026 60.000 7.94 5.79 44.63 3.07
7296 8781 1.299648 CCGGTGGTGACCATGTCAT 59.700 57.895 7.94 0.00 44.63 3.06
7297 8782 2.747022 CCGGTGGTGACCATGTCA 59.253 61.111 7.94 0.00 43.33 3.58
7298 8783 2.746277 GCCGGTGGTGACCATGTC 60.746 66.667 7.94 0.00 43.33 3.06
7299 8784 4.344865 GGCCGGTGGTGACCATGT 62.345 66.667 7.94 0.00 43.33 3.21
7300 8785 3.859118 TTGGCCGGTGGTGACCATG 62.859 63.158 7.94 3.43 43.33 3.66
7301 8786 3.575247 TTGGCCGGTGGTGACCAT 61.575 61.111 7.94 0.00 43.33 3.55
7302 8787 4.572571 GTTGGCCGGTGGTGACCA 62.573 66.667 0.00 0.00 43.33 4.02
7304 8789 4.265056 AGGTTGGCCGGTGGTGAC 62.265 66.667 1.90 0.00 40.50 3.67
7305 8790 4.263572 CAGGTTGGCCGGTGGTGA 62.264 66.667 1.90 0.00 40.50 4.02
7324 8809 3.859118 TTGTGTCCCATGCCGGTGG 62.859 63.158 1.90 3.16 39.05 4.61
7325 8810 1.865788 CTTTGTGTCCCATGCCGGTG 61.866 60.000 1.90 0.00 0.00 4.94
7326 8811 1.603455 CTTTGTGTCCCATGCCGGT 60.603 57.895 1.90 0.00 0.00 5.28
7327 8812 2.993471 GCTTTGTGTCCCATGCCGG 61.993 63.158 0.00 0.00 0.00 6.13
7328 8813 1.973281 AGCTTTGTGTCCCATGCCG 60.973 57.895 0.00 0.00 0.00 5.69
7329 8814 1.588082 CAGCTTTGTGTCCCATGCC 59.412 57.895 0.00 0.00 0.00 4.40
7330 8815 1.080298 GCAGCTTTGTGTCCCATGC 60.080 57.895 0.00 0.00 0.00 4.06
7331 8816 0.675083 TTGCAGCTTTGTGTCCCATG 59.325 50.000 0.00 0.00 0.00 3.66
7332 8817 1.342174 CTTTGCAGCTTTGTGTCCCAT 59.658 47.619 0.00 0.00 0.00 4.00
7333 8818 0.746063 CTTTGCAGCTTTGTGTCCCA 59.254 50.000 0.00 0.00 0.00 4.37
7334 8819 1.032014 TCTTTGCAGCTTTGTGTCCC 58.968 50.000 0.00 0.00 0.00 4.46
7335 8820 2.544486 CCTTCTTTGCAGCTTTGTGTCC 60.544 50.000 0.00 0.00 0.00 4.02
7336 8821 2.735823 CCTTCTTTGCAGCTTTGTGTC 58.264 47.619 0.00 0.00 0.00 3.67
7337 8822 1.202452 GCCTTCTTTGCAGCTTTGTGT 60.202 47.619 0.00 0.00 0.00 3.72
7338 8823 1.202440 TGCCTTCTTTGCAGCTTTGTG 60.202 47.619 0.00 0.00 34.05 3.33
7339 8824 1.113788 TGCCTTCTTTGCAGCTTTGT 58.886 45.000 0.00 0.00 34.05 2.83
7340 8825 2.450609 ATGCCTTCTTTGCAGCTTTG 57.549 45.000 0.00 0.00 42.92 2.77
7341 8826 3.135994 CAAATGCCTTCTTTGCAGCTTT 58.864 40.909 0.00 0.00 42.92 3.51
7342 8827 2.762745 CAAATGCCTTCTTTGCAGCTT 58.237 42.857 0.00 0.00 42.92 3.74
7343 8828 2.450609 CAAATGCCTTCTTTGCAGCT 57.549 45.000 0.00 0.00 42.92 4.24
7356 8841 0.955428 TGTGACTCCTCGGCAAATGC 60.955 55.000 0.00 0.00 41.14 3.56
7357 8842 1.466167 CTTGTGACTCCTCGGCAAATG 59.534 52.381 0.00 0.00 0.00 2.32
7358 8843 1.813513 CTTGTGACTCCTCGGCAAAT 58.186 50.000 0.00 0.00 0.00 2.32
7359 8844 0.884704 GCTTGTGACTCCTCGGCAAA 60.885 55.000 0.00 0.00 0.00 3.68
7360 8845 1.301716 GCTTGTGACTCCTCGGCAA 60.302 57.895 0.00 0.00 0.00 4.52
7361 8846 2.343758 GCTTGTGACTCCTCGGCA 59.656 61.111 0.00 0.00 0.00 5.69
7362 8847 2.811317 CGCTTGTGACTCCTCGGC 60.811 66.667 0.00 0.00 0.00 5.54
7363 8848 1.444553 GACGCTTGTGACTCCTCGG 60.445 63.158 0.00 0.00 0.00 4.63
7364 8849 0.109086 ATGACGCTTGTGACTCCTCG 60.109 55.000 0.00 0.00 0.00 4.63
7365 8850 1.634702 GATGACGCTTGTGACTCCTC 58.365 55.000 0.00 0.00 0.00 3.71
7366 8851 0.109086 CGATGACGCTTGTGACTCCT 60.109 55.000 0.00 0.00 0.00 3.69
7367 8852 0.388649 ACGATGACGCTTGTGACTCC 60.389 55.000 0.00 0.00 43.96 3.85
7368 8853 0.985549 GACGATGACGCTTGTGACTC 59.014 55.000 0.00 0.00 43.96 3.36
7369 8854 0.313987 TGACGATGACGCTTGTGACT 59.686 50.000 0.00 0.00 43.96 3.41
7370 8855 1.321743 GATGACGATGACGCTTGTGAC 59.678 52.381 0.00 0.00 43.96 3.67
7371 8856 1.067915 TGATGACGATGACGCTTGTGA 60.068 47.619 0.00 0.00 43.96 3.58
7372 8857 1.059692 GTGATGACGATGACGCTTGTG 59.940 52.381 0.00 0.00 43.96 3.33
7373 8858 1.350193 GTGATGACGATGACGCTTGT 58.650 50.000 0.00 0.00 43.96 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.