Multiple sequence alignment - TraesCS5A01G203300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G203300 chr5A 100.000 3715 0 0 1 3715 412105840 412102126 0.000000e+00 6861
1 TraesCS5A01G203300 chr5A 92.115 279 21 1 327 604 549204365 549204643 3.480000e-105 392
2 TraesCS5A01G203300 chr5D 95.801 1810 47 9 1926 3715 317452696 317450896 0.000000e+00 2894
3 TraesCS5A01G203300 chr5D 93.700 1238 40 15 695 1924 317453960 317452753 0.000000e+00 1820
4 TraesCS5A01G203300 chr5D 92.000 100 4 3 605 700 317454318 317454219 1.800000e-28 137
5 TraesCS5A01G203300 chr5D 95.238 63 3 0 2329 2391 317454401 317454463 2.360000e-17 100
6 TraesCS5A01G203300 chr5B 93.155 1344 56 16 608 1924 367213686 367212352 0.000000e+00 1940
7 TraesCS5A01G203300 chr5B 93.663 1294 51 9 1924 3192 367212300 367211013 0.000000e+00 1906
8 TraesCS5A01G203300 chr5B 93.346 511 25 7 3173 3681 367210980 367210477 0.000000e+00 747
9 TraesCS5A01G203300 chr5B 82.209 163 26 2 77 237 77571718 77571557 1.800000e-28 137
10 TraesCS5A01G203300 chr5B 96.610 59 2 0 240 298 367213759 367213701 8.490000e-17 99
11 TraesCS5A01G203300 chr4A 92.989 271 18 1 330 599 208931393 208931123 9.670000e-106 394
12 TraesCS5A01G203300 chr4A 86.070 201 24 4 1642 1840 72294412 72294610 2.910000e-51 213
13 TraesCS5A01G203300 chr4A 82.609 161 27 1 77 237 695831897 695831738 1.390000e-29 141
14 TraesCS5A01G203300 chr4A 80.357 112 11 7 307 408 58910216 58910326 1.430000e-09 75
15 TraesCS5A01G203300 chr7A 91.065 291 25 1 330 619 148252388 148252098 3.480000e-105 392
16 TraesCS5A01G203300 chr6A 91.815 281 21 2 327 606 155252240 155251961 1.250000e-104 390
17 TraesCS5A01G203300 chr6A 91.756 279 21 2 327 604 588602152 588602429 1.620000e-103 387
18 TraesCS5A01G203300 chr6A 85.470 234 28 6 1627 1856 491027825 491028056 4.800000e-59 239
19 TraesCS5A01G203300 chr6A 83.770 191 29 2 1648 1837 56134606 56134795 2.950000e-41 180
20 TraesCS5A01G203300 chr6A 79.612 206 40 2 2227 2431 491028144 491028348 2.990000e-31 147
21 TraesCS5A01G203300 chr2B 91.815 281 21 2 330 608 749849246 749848966 1.250000e-104 390
22 TraesCS5A01G203300 chr4D 89.735 302 24 3 309 603 161262509 161262208 2.710000e-101 379
23 TraesCS5A01G203300 chr4D 85.075 201 26 4 1642 1840 390598131 390598329 6.290000e-48 202
24 TraesCS5A01G203300 chr4D 81.325 166 28 2 74 237 450016080 450015916 8.370000e-27 132
25 TraesCS5A01G203300 chr7D 90.311 289 26 2 322 609 511327757 511327470 9.740000e-101 377
26 TraesCS5A01G203300 chr2A 89.073 302 27 6 307 606 768102272 768101975 1.630000e-98 370
27 TraesCS5A01G203300 chr6B 85.043 234 29 6 1627 1856 527043547 527043778 2.230000e-57 233
28 TraesCS5A01G203300 chr6B 82.036 167 27 2 73 237 648176792 648176627 5.000000e-29 139
29 TraesCS5A01G203300 chr4B 86.070 201 24 4 1642 1840 480590889 480591087 2.910000e-51 213
30 TraesCS5A01G203300 chr1A 79.233 313 49 11 307 606 255900565 255900256 1.750000e-48 204
31 TraesCS5A01G203300 chrUn 83.770 191 29 2 1648 1837 20367270 20367459 2.950000e-41 180
32 TraesCS5A01G203300 chr3D 85.625 160 23 0 77 236 407395177 407395018 6.380000e-38 169
33 TraesCS5A01G203300 chr1D 85.065 154 19 4 2279 2430 282137534 282137685 1.790000e-33 154
34 TraesCS5A01G203300 chr6D 79.717 212 39 4 2227 2436 351970262 351970053 2.310000e-32 150
35 TraesCS5A01G203300 chr1B 84.416 154 23 1 85 237 381508038 381508191 2.310000e-32 150
36 TraesCS5A01G203300 chr3A 83.230 161 27 0 77 237 737972160 737972320 8.310000e-32 148
37 TraesCS5A01G203300 chr7B 82.424 165 29 0 73 237 59076031 59075867 1.080000e-30 145
38 TraesCS5A01G203300 chr3B 82.036 167 23 4 74 237 13369125 13369287 6.470000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G203300 chr5A 412102126 412105840 3714 True 6861 6861 100.000000 1 3715 1 chr5A.!!$R1 3714
1 TraesCS5A01G203300 chr5D 317450896 317454318 3422 True 1617 2894 93.833667 605 3715 3 chr5D.!!$R1 3110
2 TraesCS5A01G203300 chr5B 367210477 367213759 3282 True 1173 1940 94.193500 240 3681 4 chr5B.!!$R2 3441

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.107831 CGGACCACCCTGTTCTCAAA 59.892 55.0 0.00 0.00 0.00 2.69 F
57 58 0.449388 CTGTTCTCAAATGCCGGCTC 59.551 55.0 29.70 0.00 0.00 4.70 F
76 77 0.592637 CCGTCATTGTGCACACATGT 59.407 50.0 21.56 3.00 41.52 3.21 F
653 654 0.657840 GATCGTCCTCCAAAATGCCG 59.342 55.0 0.00 0.00 0.00 5.69 F
838 1117 0.739462 TCGCCGAACAATACTGCAGG 60.739 55.0 19.93 1.96 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1512 1805 0.290840 CGTAGAATGCAACGACGACG 59.709 55.000 18.94 5.58 41.55 5.12 R
1592 1885 1.661341 AGCTTCGGATCAGCATGTTC 58.339 50.000 6.33 0.00 39.99 3.18 R
2057 2407 4.009675 CAAAGATCTCGGAATGACCCAAA 58.990 43.478 0.00 0.00 34.64 3.28 R
2645 2997 1.064621 GTCGCCGCCGTACTTCATA 59.935 57.895 0.00 0.00 35.54 2.15 R
2976 3338 1.676014 CGGATGGTCCAAGGAGACAAC 60.676 57.143 0.00 0.00 38.59 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.764363 CTTATCAAATTTATTTTCCTTAGGGGC 57.236 33.333 0.00 0.00 34.39 5.80
30 31 6.215495 TCAAATTTATTTTCCTTAGGGGCG 57.785 37.500 0.00 0.00 34.39 6.13
31 32 5.128008 TCAAATTTATTTTCCTTAGGGGCGG 59.872 40.000 0.00 0.00 34.39 6.13
32 33 4.529716 ATTTATTTTCCTTAGGGGCGGA 57.470 40.909 0.00 0.00 34.39 5.54
33 34 3.286329 TTATTTTCCTTAGGGGCGGAC 57.714 47.619 0.00 0.00 34.39 4.79
34 35 0.257905 ATTTTCCTTAGGGGCGGACC 59.742 55.000 0.00 0.00 39.11 4.46
35 36 1.135068 TTTTCCTTAGGGGCGGACCA 61.135 55.000 0.36 0.00 42.91 4.02
36 37 1.844544 TTTCCTTAGGGGCGGACCAC 61.845 60.000 0.36 0.00 42.91 4.16
37 38 3.793888 CCTTAGGGGCGGACCACC 61.794 72.222 0.36 0.00 42.21 4.61
38 39 3.793888 CTTAGGGGCGGACCACCC 61.794 72.222 9.35 9.35 42.21 4.61
43 44 4.717313 GGGCGGACCACCCTGTTC 62.717 72.222 10.65 0.00 44.68 3.18
44 45 3.637273 GGCGGACCACCCTGTTCT 61.637 66.667 0.00 0.00 35.26 3.01
45 46 2.047179 GCGGACCACCCTGTTCTC 60.047 66.667 0.00 0.00 0.00 2.87
46 47 2.879233 GCGGACCACCCTGTTCTCA 61.879 63.158 0.00 0.00 0.00 3.27
47 48 1.752198 CGGACCACCCTGTTCTCAA 59.248 57.895 0.00 0.00 0.00 3.02
48 49 0.107831 CGGACCACCCTGTTCTCAAA 59.892 55.000 0.00 0.00 0.00 2.69
49 50 1.271379 CGGACCACCCTGTTCTCAAAT 60.271 52.381 0.00 0.00 0.00 2.32
50 51 2.162681 GGACCACCCTGTTCTCAAATG 58.837 52.381 0.00 0.00 0.00 2.32
51 52 1.541588 GACCACCCTGTTCTCAAATGC 59.458 52.381 0.00 0.00 0.00 3.56
52 53 0.890683 CCACCCTGTTCTCAAATGCC 59.109 55.000 0.00 0.00 0.00 4.40
53 54 0.523072 CACCCTGTTCTCAAATGCCG 59.477 55.000 0.00 0.00 0.00 5.69
54 55 0.609131 ACCCTGTTCTCAAATGCCGG 60.609 55.000 0.00 0.00 0.00 6.13
55 56 1.508088 CCTGTTCTCAAATGCCGGC 59.492 57.895 22.73 22.73 0.00 6.13
56 57 0.962356 CCTGTTCTCAAATGCCGGCT 60.962 55.000 29.70 10.60 0.00 5.52
57 58 0.449388 CTGTTCTCAAATGCCGGCTC 59.551 55.000 29.70 0.00 0.00 4.70
58 59 0.960364 TGTTCTCAAATGCCGGCTCC 60.960 55.000 29.70 0.00 0.00 4.70
59 60 1.745115 TTCTCAAATGCCGGCTCCG 60.745 57.895 29.70 13.57 39.44 4.63
60 61 2.436646 CTCAAATGCCGGCTCCGT 60.437 61.111 29.70 8.26 37.81 4.69
61 62 2.435938 TCAAATGCCGGCTCCGTC 60.436 61.111 29.70 0.00 37.81 4.79
62 63 2.745884 CAAATGCCGGCTCCGTCA 60.746 61.111 29.70 6.08 37.81 4.35
63 64 2.114670 CAAATGCCGGCTCCGTCAT 61.115 57.895 29.70 8.67 39.78 3.06
64 65 2.272146 AATGCCGGCTCCGTCATT 59.728 55.556 29.70 14.95 42.03 2.57
65 66 1.656818 AAATGCCGGCTCCGTCATTG 61.657 55.000 29.70 0.00 45.24 2.82
66 67 2.819984 AATGCCGGCTCCGTCATTGT 62.820 55.000 29.70 0.00 44.48 2.71
67 68 3.499737 GCCGGCTCCGTCATTGTG 61.500 66.667 22.15 0.00 37.81 3.33
68 69 3.499737 CCGGCTCCGTCATTGTGC 61.500 66.667 7.59 0.00 37.81 4.57
69 70 2.741985 CGGCTCCGTCATTGTGCA 60.742 61.111 0.00 0.00 34.35 4.57
70 71 2.870372 GGCTCCGTCATTGTGCAC 59.130 61.111 10.75 10.75 0.00 4.57
71 72 1.965930 GGCTCCGTCATTGTGCACA 60.966 57.895 17.42 17.42 0.00 4.57
72 73 1.207593 GCTCCGTCATTGTGCACAC 59.792 57.895 21.56 7.11 0.00 3.82
73 74 1.506309 GCTCCGTCATTGTGCACACA 61.506 55.000 21.56 11.57 39.98 3.72
74 75 1.159285 CTCCGTCATTGTGCACACAT 58.841 50.000 21.56 13.43 41.52 3.21
75 76 0.873721 TCCGTCATTGTGCACACATG 59.126 50.000 21.56 23.35 41.52 3.21
76 77 0.592637 CCGTCATTGTGCACACATGT 59.407 50.000 21.56 3.00 41.52 3.21
77 78 1.803555 CCGTCATTGTGCACACATGTA 59.196 47.619 21.56 4.51 41.52 2.29
78 79 2.412716 CCGTCATTGTGCACACATGTAC 60.413 50.000 21.56 20.12 41.52 2.90
79 80 2.480037 CGTCATTGTGCACACATGTACT 59.520 45.455 21.56 0.00 41.64 2.73
80 81 3.423515 CGTCATTGTGCACACATGTACTC 60.424 47.826 21.56 14.98 41.64 2.59
81 82 3.748048 GTCATTGTGCACACATGTACTCT 59.252 43.478 21.56 0.00 41.64 3.24
82 83 3.996363 TCATTGTGCACACATGTACTCTC 59.004 43.478 21.56 0.00 41.64 3.20
83 84 3.751479 TTGTGCACACATGTACTCTCT 57.249 42.857 21.56 0.00 41.64 3.10
84 85 3.751479 TGTGCACACATGTACTCTCTT 57.249 42.857 17.42 0.00 41.64 2.85
85 86 3.653344 TGTGCACACATGTACTCTCTTC 58.347 45.455 17.42 0.00 41.64 2.87
86 87 3.069443 TGTGCACACATGTACTCTCTTCA 59.931 43.478 17.42 0.00 41.64 3.02
87 88 4.248859 GTGCACACATGTACTCTCTTCAT 58.751 43.478 13.17 0.00 38.33 2.57
88 89 4.692625 GTGCACACATGTACTCTCTTCATT 59.307 41.667 13.17 0.00 38.33 2.57
89 90 4.931601 TGCACACATGTACTCTCTTCATTC 59.068 41.667 0.00 0.00 0.00 2.67
90 91 4.331168 GCACACATGTACTCTCTTCATTCC 59.669 45.833 0.00 0.00 0.00 3.01
91 92 5.728471 CACACATGTACTCTCTTCATTCCT 58.272 41.667 0.00 0.00 0.00 3.36
92 93 6.628175 GCACACATGTACTCTCTTCATTCCTA 60.628 42.308 0.00 0.00 0.00 2.94
93 94 7.323420 CACACATGTACTCTCTTCATTCCTAA 58.677 38.462 0.00 0.00 0.00 2.69
94 95 7.819415 CACACATGTACTCTCTTCATTCCTAAA 59.181 37.037 0.00 0.00 0.00 1.85
95 96 8.543774 ACACATGTACTCTCTTCATTCCTAAAT 58.456 33.333 0.00 0.00 0.00 1.40
127 128 9.567776 TCTTTGTAGAGATTTCATTACAAACCA 57.432 29.630 12.02 4.30 39.64 3.67
128 129 9.612620 CTTTGTAGAGATTTCATTACAAACCAC 57.387 33.333 12.02 0.00 39.64 4.16
129 130 8.684386 TTGTAGAGATTTCATTACAAACCACA 57.316 30.769 5.14 0.00 34.21 4.17
130 131 8.862325 TGTAGAGATTTCATTACAAACCACAT 57.138 30.769 0.00 0.00 0.00 3.21
131 132 9.952030 TGTAGAGATTTCATTACAAACCACATA 57.048 29.630 0.00 0.00 0.00 2.29
150 151 9.618890 ACCACATATAGAAATATATGGATGCAC 57.381 33.333 15.91 0.00 42.91 4.57
151 152 9.842775 CCACATATAGAAATATATGGATGCACT 57.157 33.333 15.91 0.00 42.91 4.40
162 163 6.889301 ATATGGATGCACTTTAGAATGTGG 57.111 37.500 9.54 0.00 35.36 4.17
163 164 4.299586 TGGATGCACTTTAGAATGTGGA 57.700 40.909 9.54 7.47 38.40 4.02
164 165 4.858850 TGGATGCACTTTAGAATGTGGAT 58.141 39.130 12.91 12.91 43.99 3.41
165 166 5.263599 TGGATGCACTTTAGAATGTGGATT 58.736 37.500 13.85 2.37 42.33 3.01
166 167 5.357878 TGGATGCACTTTAGAATGTGGATTC 59.642 40.000 13.85 12.79 42.33 2.52
167 168 5.357878 GGATGCACTTTAGAATGTGGATTCA 59.642 40.000 13.85 3.85 42.33 2.57
168 169 5.627499 TGCACTTTAGAATGTGGATTCAC 57.373 39.130 0.00 0.00 40.59 3.18
169 170 5.316167 TGCACTTTAGAATGTGGATTCACT 58.684 37.500 5.55 0.00 43.94 3.41
170 171 5.769662 TGCACTTTAGAATGTGGATTCACTT 59.230 36.000 5.55 0.00 43.94 3.16
171 172 6.939730 TGCACTTTAGAATGTGGATTCACTTA 59.060 34.615 5.55 0.00 43.94 2.24
172 173 7.611467 TGCACTTTAGAATGTGGATTCACTTAT 59.389 33.333 5.55 0.00 43.94 1.73
173 174 8.462016 GCACTTTAGAATGTGGATTCACTTATT 58.538 33.333 5.55 0.00 43.94 1.40
177 178 9.638239 TTTAGAATGTGGATTCACTTATTTTGC 57.362 29.630 5.55 0.00 43.94 3.68
178 179 7.472334 AGAATGTGGATTCACTTATTTTGCT 57.528 32.000 5.55 0.00 43.94 3.91
179 180 7.542025 AGAATGTGGATTCACTTATTTTGCTC 58.458 34.615 5.55 0.00 43.94 4.26
180 181 5.643379 TGTGGATTCACTTATTTTGCTCC 57.357 39.130 5.55 0.00 43.94 4.70
181 182 5.076182 TGTGGATTCACTTATTTTGCTCCA 58.924 37.500 5.55 0.00 43.94 3.86
182 183 5.716228 TGTGGATTCACTTATTTTGCTCCAT 59.284 36.000 5.55 0.00 43.94 3.41
183 184 6.889177 TGTGGATTCACTTATTTTGCTCCATA 59.111 34.615 5.55 0.00 43.94 2.74
184 185 7.560991 TGTGGATTCACTTATTTTGCTCCATAT 59.439 33.333 5.55 0.00 43.94 1.78
185 186 9.066892 GTGGATTCACTTATTTTGCTCCATATA 57.933 33.333 0.00 0.00 40.58 0.86
186 187 9.812347 TGGATTCACTTATTTTGCTCCATATAT 57.188 29.630 0.00 0.00 0.00 0.86
191 192 9.944376 TCACTTATTTTGCTCCATATATAGTCC 57.056 33.333 0.00 0.00 0.00 3.85
192 193 8.873830 CACTTATTTTGCTCCATATATAGTCCG 58.126 37.037 0.00 0.00 0.00 4.79
193 194 8.594550 ACTTATTTTGCTCCATATATAGTCCGT 58.405 33.333 0.00 0.00 0.00 4.69
196 197 7.534723 TTTTGCTCCATATATAGTCCGTAGT 57.465 36.000 0.00 0.00 0.00 2.73
197 198 6.510879 TTGCTCCATATATAGTCCGTAGTG 57.489 41.667 0.00 0.00 0.00 2.74
198 199 5.812286 TGCTCCATATATAGTCCGTAGTGA 58.188 41.667 0.00 0.00 0.00 3.41
199 200 6.243148 TGCTCCATATATAGTCCGTAGTGAA 58.757 40.000 0.00 0.00 0.00 3.18
200 201 6.717997 TGCTCCATATATAGTCCGTAGTGAAA 59.282 38.462 0.00 0.00 0.00 2.69
201 202 7.396339 TGCTCCATATATAGTCCGTAGTGAAAT 59.604 37.037 0.00 0.00 0.00 2.17
202 203 7.916450 GCTCCATATATAGTCCGTAGTGAAATC 59.084 40.741 0.00 0.00 0.00 2.17
203 204 9.179909 CTCCATATATAGTCCGTAGTGAAATCT 57.820 37.037 0.00 0.00 0.00 2.40
204 205 9.175312 TCCATATATAGTCCGTAGTGAAATCTC 57.825 37.037 0.00 0.00 0.00 2.75
205 206 9.179909 CCATATATAGTCCGTAGTGAAATCTCT 57.820 37.037 0.00 0.00 0.00 3.10
206 207 9.995957 CATATATAGTCCGTAGTGAAATCTCTG 57.004 37.037 0.00 0.00 0.00 3.35
207 208 3.512033 AGTCCGTAGTGAAATCTCTGC 57.488 47.619 0.00 0.00 0.00 4.26
208 209 2.826128 AGTCCGTAGTGAAATCTCTGCA 59.174 45.455 0.00 0.00 0.00 4.41
209 210 3.258372 AGTCCGTAGTGAAATCTCTGCAA 59.742 43.478 0.00 0.00 0.00 4.08
210 211 3.994392 GTCCGTAGTGAAATCTCTGCAAA 59.006 43.478 0.00 0.00 0.00 3.68
211 212 4.092091 GTCCGTAGTGAAATCTCTGCAAAG 59.908 45.833 0.00 0.00 0.00 2.77
212 213 4.021456 TCCGTAGTGAAATCTCTGCAAAGA 60.021 41.667 0.00 0.00 0.00 2.52
213 214 4.092091 CCGTAGTGAAATCTCTGCAAAGAC 59.908 45.833 0.00 0.00 0.00 3.01
214 215 4.926238 CGTAGTGAAATCTCTGCAAAGACT 59.074 41.667 0.00 0.00 0.00 3.24
215 216 5.406780 CGTAGTGAAATCTCTGCAAAGACTT 59.593 40.000 0.00 0.00 0.00 3.01
216 217 5.686159 AGTGAAATCTCTGCAAAGACTTG 57.314 39.130 0.00 0.00 35.49 3.16
217 218 5.128919 AGTGAAATCTCTGCAAAGACTTGT 58.871 37.500 0.00 0.00 34.79 3.16
218 219 6.291377 AGTGAAATCTCTGCAAAGACTTGTA 58.709 36.000 0.00 0.00 34.79 2.41
219 220 6.939163 AGTGAAATCTCTGCAAAGACTTGTAT 59.061 34.615 0.00 0.00 34.79 2.29
220 221 7.446625 AGTGAAATCTCTGCAAAGACTTGTATT 59.553 33.333 0.00 0.00 34.79 1.89
221 222 8.078596 GTGAAATCTCTGCAAAGACTTGTATTT 58.921 33.333 0.00 0.00 34.79 1.40
222 223 9.283768 TGAAATCTCTGCAAAGACTTGTATTTA 57.716 29.630 0.00 0.00 34.79 1.40
223 224 9.766277 GAAATCTCTGCAAAGACTTGTATTTAG 57.234 33.333 0.00 0.00 34.79 1.85
224 225 9.507329 AAATCTCTGCAAAGACTTGTATTTAGA 57.493 29.630 0.00 0.00 34.79 2.10
225 226 9.507329 AATCTCTGCAAAGACTTGTATTTAGAA 57.493 29.630 0.00 0.00 34.79 2.10
226 227 8.902540 TCTCTGCAAAGACTTGTATTTAGAAA 57.097 30.769 0.00 0.00 34.79 2.52
227 228 9.507329 TCTCTGCAAAGACTTGTATTTAGAAAT 57.493 29.630 0.00 0.00 34.79 2.17
228 229 9.552114 CTCTGCAAAGACTTGTATTTAGAAATG 57.448 33.333 0.00 0.00 34.79 2.32
229 230 9.283768 TCTGCAAAGACTTGTATTTAGAAATGA 57.716 29.630 0.00 0.00 34.79 2.57
230 231 9.897744 CTGCAAAGACTTGTATTTAGAAATGAA 57.102 29.630 0.00 0.00 34.79 2.57
231 232 9.897744 TGCAAAGACTTGTATTTAGAAATGAAG 57.102 29.630 0.00 3.30 34.79 3.02
232 233 9.346725 GCAAAGACTTGTATTTAGAAATGAAGG 57.653 33.333 10.77 0.00 34.79 3.46
233 234 9.846248 CAAAGACTTGTATTTAGAAATGAAGGG 57.154 33.333 10.77 0.00 0.00 3.95
234 235 9.807921 AAAGACTTGTATTTAGAAATGAAGGGA 57.192 29.630 10.77 0.00 0.00 4.20
235 236 9.454859 AAGACTTGTATTTAGAAATGAAGGGAG 57.545 33.333 10.77 0.00 0.00 4.30
236 237 8.606830 AGACTTGTATTTAGAAATGAAGGGAGT 58.393 33.333 10.77 0.00 0.00 3.85
237 238 8.567285 ACTTGTATTTAGAAATGAAGGGAGTG 57.433 34.615 10.77 0.00 0.00 3.51
238 239 8.164070 ACTTGTATTTAGAAATGAAGGGAGTGT 58.836 33.333 10.77 0.00 0.00 3.55
256 257 8.058847 AGGGAGTGTAAAAGCATCCATATTAAA 58.941 33.333 0.00 0.00 0.00 1.52
298 299 2.748461 TTTTGAAACCAGACGCGAAG 57.252 45.000 15.93 0.89 0.00 3.79
299 300 1.658994 TTTGAAACCAGACGCGAAGT 58.341 45.000 15.93 0.37 0.00 3.01
300 301 1.658994 TTGAAACCAGACGCGAAGTT 58.341 45.000 15.93 7.59 0.00 2.66
302 303 2.011222 TGAAACCAGACGCGAAGTTTT 58.989 42.857 15.93 5.08 32.80 2.43
304 305 3.622163 TGAAACCAGACGCGAAGTTTTTA 59.378 39.130 15.93 7.34 32.80 1.52
307 308 5.927954 AACCAGACGCGAAGTTTTTATTA 57.072 34.783 15.93 0.00 0.00 0.98
308 309 5.927954 ACCAGACGCGAAGTTTTTATTAA 57.072 34.783 15.93 0.00 0.00 1.40
309 310 5.923665 ACCAGACGCGAAGTTTTTATTAAG 58.076 37.500 15.93 0.00 0.00 1.85
310 311 5.106830 ACCAGACGCGAAGTTTTTATTAAGG 60.107 40.000 15.93 0.00 0.00 2.69
311 312 4.786575 CAGACGCGAAGTTTTTATTAAGGC 59.213 41.667 15.93 0.00 0.00 4.35
312 313 4.087510 ACGCGAAGTTTTTATTAAGGCC 57.912 40.909 15.93 0.00 0.00 5.19
313 314 3.754850 ACGCGAAGTTTTTATTAAGGCCT 59.245 39.130 15.93 0.00 0.00 5.19
315 316 4.791676 CGCGAAGTTTTTATTAAGGCCTTC 59.208 41.667 24.49 4.66 0.00 3.46
316 317 5.391629 CGCGAAGTTTTTATTAAGGCCTTCT 60.392 40.000 24.49 13.59 0.00 2.85
317 318 6.387465 GCGAAGTTTTTATTAAGGCCTTCTT 58.613 36.000 24.49 16.20 39.40 2.52
318 319 6.866770 GCGAAGTTTTTATTAAGGCCTTCTTT 59.133 34.615 24.49 10.63 36.93 2.52
319 320 7.148804 GCGAAGTTTTTATTAAGGCCTTCTTTG 60.149 37.037 24.49 19.45 36.93 2.77
320 321 7.328493 CGAAGTTTTTATTAAGGCCTTCTTTGG 59.672 37.037 24.49 8.72 36.93 3.28
321 322 7.612065 AGTTTTTATTAAGGCCTTCTTTGGT 57.388 32.000 24.49 0.00 36.93 3.67
322 323 8.029782 AGTTTTTATTAAGGCCTTCTTTGGTT 57.970 30.769 24.49 0.00 36.93 3.67
323 324 8.491134 AGTTTTTATTAAGGCCTTCTTTGGTTT 58.509 29.630 24.49 0.00 36.93 3.27
324 325 9.767228 GTTTTTATTAAGGCCTTCTTTGGTTTA 57.233 29.630 24.49 0.00 36.93 2.01
325 326 9.990360 TTTTTATTAAGGCCTTCTTTGGTTTAG 57.010 29.630 24.49 0.00 36.93 1.85
326 327 8.943594 TTTATTAAGGCCTTCTTTGGTTTAGA 57.056 30.769 24.49 0.00 36.93 2.10
327 328 8.575649 TTATTAAGGCCTTCTTTGGTTTAGAG 57.424 34.615 24.49 0.00 36.93 2.43
328 329 4.724279 AAGGCCTTCTTTGGTTTAGAGA 57.276 40.909 13.78 0.00 29.99 3.10
329 330 4.724279 AGGCCTTCTTTGGTTTAGAGAA 57.276 40.909 0.00 0.00 0.00 2.87
330 331 5.061721 AGGCCTTCTTTGGTTTAGAGAAA 57.938 39.130 0.00 0.00 0.00 2.52
331 332 5.645201 AGGCCTTCTTTGGTTTAGAGAAAT 58.355 37.500 0.00 0.00 0.00 2.17
332 333 6.077993 AGGCCTTCTTTGGTTTAGAGAAATT 58.922 36.000 0.00 0.00 0.00 1.82
333 334 6.554982 AGGCCTTCTTTGGTTTAGAGAAATTT 59.445 34.615 0.00 0.00 0.00 1.82
334 335 7.071196 AGGCCTTCTTTGGTTTAGAGAAATTTT 59.929 33.333 0.00 0.00 0.00 1.82
335 336 8.364894 GGCCTTCTTTGGTTTAGAGAAATTTTA 58.635 33.333 0.00 0.00 0.00 1.52
336 337 9.929180 GCCTTCTTTGGTTTAGAGAAATTTTAT 57.071 29.630 0.00 0.00 0.00 1.40
380 381 6.747414 AAAATTCCTTTAGAGCCTTTTGGT 57.253 33.333 0.00 0.00 42.99 3.67
381 382 6.747414 AAATTCCTTTAGAGCCTTTTGGTT 57.253 33.333 0.00 0.00 42.99 3.67
382 383 6.747414 AATTCCTTTAGAGCCTTTTGGTTT 57.253 33.333 0.00 0.00 42.99 3.27
383 384 5.529581 TTCCTTTAGAGCCTTTTGGTTTG 57.470 39.130 0.00 0.00 42.99 2.93
384 385 4.542697 TCCTTTAGAGCCTTTTGGTTTGT 58.457 39.130 0.00 0.00 42.99 2.83
385 386 5.697067 TCCTTTAGAGCCTTTTGGTTTGTA 58.303 37.500 0.00 0.00 42.99 2.41
386 387 5.768164 TCCTTTAGAGCCTTTTGGTTTGTAG 59.232 40.000 0.00 0.00 42.99 2.74
387 388 5.048013 CCTTTAGAGCCTTTTGGTTTGTAGG 60.048 44.000 0.00 0.00 42.99 3.18
388 389 3.876309 AGAGCCTTTTGGTTTGTAGGA 57.124 42.857 0.00 0.00 42.99 2.94
389 390 4.178956 AGAGCCTTTTGGTTTGTAGGAA 57.821 40.909 0.00 0.00 42.99 3.36
390 391 4.740902 AGAGCCTTTTGGTTTGTAGGAAT 58.259 39.130 0.00 0.00 42.99 3.01
391 392 4.524328 AGAGCCTTTTGGTTTGTAGGAATG 59.476 41.667 0.00 0.00 42.99 2.67
392 393 3.578282 AGCCTTTTGGTTTGTAGGAATGG 59.422 43.478 0.00 0.00 42.99 3.16
393 394 3.576550 GCCTTTTGGTTTGTAGGAATGGA 59.423 43.478 0.00 0.00 42.99 3.41
394 395 4.039852 GCCTTTTGGTTTGTAGGAATGGAA 59.960 41.667 0.00 0.00 42.99 3.53
395 396 5.279960 GCCTTTTGGTTTGTAGGAATGGAAT 60.280 40.000 0.00 0.00 42.99 3.01
396 397 6.398095 CCTTTTGGTTTGTAGGAATGGAATC 58.602 40.000 0.00 0.00 34.07 2.52
397 398 5.993748 TTTGGTTTGTAGGAATGGAATCC 57.006 39.130 0.00 0.00 39.96 3.01
398 399 8.673467 CCTTTTGGTTTGTAGGAATGGAATCCT 61.673 40.741 0.00 0.97 42.90 3.24
411 412 7.115414 GGAATGGAATCCTATTCCTATGAAGG 58.885 42.308 23.95 0.00 45.66 3.46
412 413 7.037297 GGAATGGAATCCTATTCCTATGAAGGA 60.037 40.741 23.95 0.00 45.66 3.36
497 498 7.507733 AATCCTATGATGTGAATCAAAGAGC 57.492 36.000 0.00 0.00 33.83 4.09
498 499 5.993055 TCCTATGATGTGAATCAAAGAGCA 58.007 37.500 0.00 0.00 33.83 4.26
499 500 6.598503 TCCTATGATGTGAATCAAAGAGCAT 58.401 36.000 0.00 0.00 33.83 3.79
500 501 6.709397 TCCTATGATGTGAATCAAAGAGCATC 59.291 38.462 4.45 4.45 33.83 3.91
501 502 6.711194 CCTATGATGTGAATCAAAGAGCATCT 59.289 38.462 10.68 2.28 38.87 2.90
520 521 9.988815 GAGCATCTTATTTCCTATTTCTACTCA 57.011 33.333 0.00 0.00 0.00 3.41
532 533 9.883293 TCCTATTTCTACTCATAGGATTTGAGA 57.117 33.333 7.63 0.00 44.16 3.27
539 540 9.593565 TCTACTCATAGGATTTGAGATACATGT 57.406 33.333 2.69 2.69 42.63 3.21
540 541 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
541 542 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
542 543 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
543 544 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
544 545 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
545 546 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
560 561 9.458727 ACATGTCATCTCATTTTCTATGACTTT 57.541 29.630 13.59 1.75 45.40 2.66
561 562 9.932699 CATGTCATCTCATTTTCTATGACTTTC 57.067 33.333 13.59 0.00 45.40 2.62
562 563 8.498054 TGTCATCTCATTTTCTATGACTTTCC 57.502 34.615 13.59 0.00 45.40 3.13
563 564 8.324306 TGTCATCTCATTTTCTATGACTTTCCT 58.676 33.333 13.59 0.00 45.40 3.36
564 565 9.823647 GTCATCTCATTTTCTATGACTTTCCTA 57.176 33.333 0.00 0.00 43.07 2.94
576 577 9.575868 TCTATGACTTTCCTATTTCTACGATCT 57.424 33.333 0.00 0.00 0.00 2.75
579 580 8.703604 TGACTTTCCTATTTCTACGATCTTTG 57.296 34.615 0.00 0.00 0.00 2.77
580 581 8.311836 TGACTTTCCTATTTCTACGATCTTTGT 58.688 33.333 0.00 0.00 0.00 2.83
581 582 9.798994 GACTTTCCTATTTCTACGATCTTTGTA 57.201 33.333 0.00 0.00 0.00 2.41
582 583 9.583765 ACTTTCCTATTTCTACGATCTTTGTAC 57.416 33.333 0.00 0.00 0.00 2.90
583 584 8.937634 TTTCCTATTTCTACGATCTTTGTACC 57.062 34.615 0.00 0.00 0.00 3.34
584 585 7.893124 TCCTATTTCTACGATCTTTGTACCT 57.107 36.000 0.00 0.00 0.00 3.08
585 586 8.302515 TCCTATTTCTACGATCTTTGTACCTT 57.697 34.615 0.00 0.00 0.00 3.50
586 587 9.412460 TCCTATTTCTACGATCTTTGTACCTTA 57.588 33.333 0.00 0.00 0.00 2.69
592 593 9.745880 TTCTACGATCTTTGTACCTTATGAATC 57.254 33.333 0.00 0.00 0.00 2.52
593 594 8.909923 TCTACGATCTTTGTACCTTATGAATCA 58.090 33.333 0.00 0.00 0.00 2.57
594 595 9.529325 CTACGATCTTTGTACCTTATGAATCAA 57.471 33.333 0.00 0.00 0.00 2.57
595 596 8.786826 ACGATCTTTGTACCTTATGAATCAAA 57.213 30.769 0.00 0.00 0.00 2.69
596 597 8.883731 ACGATCTTTGTACCTTATGAATCAAAG 58.116 33.333 0.00 0.00 41.35 2.77
597 598 8.338259 CGATCTTTGTACCTTATGAATCAAAGG 58.662 37.037 16.92 16.92 46.44 3.11
598 599 9.396022 GATCTTTGTACCTTATGAATCAAAGGA 57.604 33.333 22.08 9.77 44.27 3.36
599 600 8.792830 TCTTTGTACCTTATGAATCAAAGGAG 57.207 34.615 22.08 13.10 44.27 3.69
600 601 8.383175 TCTTTGTACCTTATGAATCAAAGGAGT 58.617 33.333 22.08 9.97 44.27 3.85
601 602 8.561738 TTTGTACCTTATGAATCAAAGGAGTC 57.438 34.615 22.08 14.66 44.27 3.36
602 603 6.650120 TGTACCTTATGAATCAAAGGAGTCC 58.350 40.000 22.08 0.00 44.27 3.85
603 604 6.443849 TGTACCTTATGAATCAAAGGAGTCCT 59.556 38.462 22.08 5.62 44.27 3.85
604 605 7.622081 TGTACCTTATGAATCAAAGGAGTCCTA 59.378 37.037 22.08 0.00 44.27 2.94
605 606 7.510675 ACCTTATGAATCAAAGGAGTCCTAA 57.489 36.000 22.08 1.33 44.27 2.69
606 607 7.928873 ACCTTATGAATCAAAGGAGTCCTAAA 58.071 34.615 22.08 0.93 44.27 1.85
607 608 8.390921 ACCTTATGAATCAAAGGAGTCCTAAAA 58.609 33.333 22.08 0.53 44.27 1.52
608 609 9.243105 CCTTATGAATCAAAGGAGTCCTAAAAA 57.757 33.333 13.43 0.00 44.27 1.94
653 654 0.657840 GATCGTCCTCCAAAATGCCG 59.342 55.000 0.00 0.00 0.00 5.69
744 1015 3.301432 CAATTTTGCAACGTTGGTGTG 57.699 42.857 28.33 5.03 0.00 3.82
745 1016 1.285578 ATTTTGCAACGTTGGTGTGC 58.714 45.000 28.33 15.89 0.00 4.57
746 1017 1.073216 TTTTGCAACGTTGGTGTGCG 61.073 50.000 28.33 2.69 0.00 5.34
747 1018 4.544689 TGCAACGTTGGTGTGCGC 62.545 61.111 28.33 13.45 0.00 6.09
748 1019 4.544689 GCAACGTTGGTGTGCGCA 62.545 61.111 28.33 5.66 0.00 6.09
830 1109 5.448632 GGACTAATTCAAATCGCCGAACAAT 60.449 40.000 0.00 0.00 0.00 2.71
835 1114 2.095213 TCAAATCGCCGAACAATACTGC 59.905 45.455 0.00 0.00 0.00 4.40
838 1117 0.739462 TCGCCGAACAATACTGCAGG 60.739 55.000 19.93 1.96 0.00 4.85
898 1177 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1146 1427 2.676471 GTGCGGTCCATGGCCTTT 60.676 61.111 19.11 0.00 0.00 3.11
1176 1457 2.925170 ACCCAGCTCTTCGGCAGT 60.925 61.111 0.00 0.00 34.17 4.40
1247 1528 2.048127 GTCCACCGGTGAGTGCTC 60.048 66.667 36.07 14.25 36.38 4.26
1314 1595 2.592212 GCGCATTGCACTTGTTTGT 58.408 47.368 9.69 0.00 45.45 2.83
1341 1629 3.471806 GGGTCCCTCCTCTTCGGC 61.472 72.222 0.00 0.00 36.25 5.54
1347 1635 2.131067 CCTCCTCTTCGGCCTCCTC 61.131 68.421 0.00 0.00 0.00 3.71
1578 1871 1.376543 CCTGCTGTGCATCTTACCAG 58.623 55.000 0.00 0.00 38.13 4.00
1586 1879 3.441222 TGTGCATCTTACCAGCAAATCAG 59.559 43.478 0.00 0.00 40.35 2.90
1592 1885 5.947228 TCTTACCAGCAAATCAGTTCAAG 57.053 39.130 0.00 0.00 0.00 3.02
1601 1894 4.384846 GCAAATCAGTTCAAGAACATGCTG 59.615 41.667 14.69 4.94 43.47 4.41
2057 2407 2.242043 CACCCTTCTGACCTTGCAAAT 58.758 47.619 0.00 0.00 0.00 2.32
2447 2799 2.742116 CCCCGTCAACCCCATCGAT 61.742 63.158 0.00 0.00 0.00 3.59
2457 2809 2.721859 CCATCGATCACTCCGCGA 59.278 61.111 8.23 0.00 38.51 5.87
2610 2962 3.051210 CCCTGTCAGAGTGCGACA 58.949 61.111 0.00 0.00 41.00 4.35
2791 3143 2.975489 GAGGATGACAGGGGATGTACAT 59.025 50.000 8.43 8.43 44.17 2.29
2800 3152 1.481056 GGGATGTACATAGGCGGGCT 61.481 60.000 8.71 9.68 0.00 5.19
2998 3360 1.612146 TCTCCTTGGACCATCCGCA 60.612 57.895 0.00 0.00 40.17 5.69
3038 3409 3.791993 TCAACGACGTTAAAATTCCGG 57.208 42.857 13.77 0.00 0.00 5.14
3357 3793 2.168521 TCACCGGCTAGGAAAGATTCTG 59.831 50.000 0.00 0.00 45.00 3.02
3358 3794 1.486726 ACCGGCTAGGAAAGATTCTGG 59.513 52.381 0.00 0.00 45.00 3.86
3467 3903 0.249489 CCGATAGAGGAAACTGGCCG 60.249 60.000 0.00 0.00 44.43 6.13
3511 3947 2.583520 GCTCCTGCCTGGACAGAG 59.416 66.667 16.44 10.25 40.56 3.35
3512 3948 1.986757 GCTCCTGCCTGGACAGAGA 60.987 63.158 16.44 11.73 40.56 3.10
3513 3949 1.958902 GCTCCTGCCTGGACAGAGAG 61.959 65.000 16.44 18.34 40.56 3.20
3514 3950 0.324183 CTCCTGCCTGGACAGAGAGA 60.324 60.000 16.44 7.27 40.56 3.10
3532 3968 3.252215 AGAGAGCTGCTATGTACACGATC 59.748 47.826 0.00 0.00 0.00 3.69
3570 4006 1.213799 GACGGTCGGACCCACTTAC 59.786 63.158 21.06 3.38 33.75 2.34
3612 4048 4.708576 TGGGATAAACTTGTGGTGTGTA 57.291 40.909 0.00 0.00 0.00 2.90
3635 4071 1.157870 AGAAACGTGCTGGTGGTTCG 61.158 55.000 0.00 0.00 0.00 3.95
3704 4140 2.975536 CGGGGTCGTCCTGCTAAA 59.024 61.111 0.00 0.00 34.67 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.764363 GCCCCTAAGGAAAATAAATTTGATAAG 57.236 33.333 0.00 0.00 38.24 1.73
4 5 8.417884 CGCCCCTAAGGAAAATAAATTTGATAA 58.582 33.333 0.00 0.00 38.24 1.75
5 6 7.014808 CCGCCCCTAAGGAAAATAAATTTGATA 59.985 37.037 0.00 0.00 38.24 2.15
6 7 6.183360 CCGCCCCTAAGGAAAATAAATTTGAT 60.183 38.462 0.00 0.00 38.24 2.57
7 8 5.128008 CCGCCCCTAAGGAAAATAAATTTGA 59.872 40.000 0.00 0.00 38.24 2.69
8 9 5.128008 TCCGCCCCTAAGGAAAATAAATTTG 59.872 40.000 0.00 0.00 38.24 2.32
9 10 5.128171 GTCCGCCCCTAAGGAAAATAAATTT 59.872 40.000 0.00 0.00 38.41 1.82
10 11 4.647853 GTCCGCCCCTAAGGAAAATAAATT 59.352 41.667 0.00 0.00 38.41 1.82
11 12 4.212716 GTCCGCCCCTAAGGAAAATAAAT 58.787 43.478 0.00 0.00 38.41 1.40
12 13 3.623703 GTCCGCCCCTAAGGAAAATAAA 58.376 45.455 0.00 0.00 38.41 1.40
13 14 2.092267 GGTCCGCCCCTAAGGAAAATAA 60.092 50.000 0.00 0.00 38.41 1.40
14 15 1.491754 GGTCCGCCCCTAAGGAAAATA 59.508 52.381 0.00 0.00 38.41 1.40
15 16 0.257905 GGTCCGCCCCTAAGGAAAAT 59.742 55.000 0.00 0.00 38.41 1.82
16 17 1.135068 TGGTCCGCCCCTAAGGAAAA 61.135 55.000 0.00 0.00 38.41 2.29
17 18 1.539372 TGGTCCGCCCCTAAGGAAA 60.539 57.895 0.00 0.00 38.41 3.13
18 19 2.123180 TGGTCCGCCCCTAAGGAA 59.877 61.111 0.00 0.00 38.41 3.36
19 20 2.686106 GTGGTCCGCCCCTAAGGA 60.686 66.667 0.00 0.00 38.24 3.36
20 21 3.793888 GGTGGTCCGCCCCTAAGG 61.794 72.222 10.73 0.00 39.47 2.69
27 28 3.607370 GAGAACAGGGTGGTCCGCC 62.607 68.421 13.61 13.61 33.71 6.13
28 29 2.047179 GAGAACAGGGTGGTCCGC 60.047 66.667 0.00 0.00 33.71 5.54
29 30 0.107831 TTTGAGAACAGGGTGGTCCG 59.892 55.000 0.00 0.00 33.71 4.79
30 31 2.162681 CATTTGAGAACAGGGTGGTCC 58.837 52.381 0.00 0.00 33.71 4.46
31 32 1.541588 GCATTTGAGAACAGGGTGGTC 59.458 52.381 0.00 0.00 33.32 4.02
32 33 1.620822 GCATTTGAGAACAGGGTGGT 58.379 50.000 0.00 0.00 0.00 4.16
33 34 0.890683 GGCATTTGAGAACAGGGTGG 59.109 55.000 0.00 0.00 0.00 4.61
34 35 0.523072 CGGCATTTGAGAACAGGGTG 59.477 55.000 0.00 0.00 0.00 4.61
35 36 0.609131 CCGGCATTTGAGAACAGGGT 60.609 55.000 0.00 0.00 0.00 4.34
36 37 1.937546 GCCGGCATTTGAGAACAGGG 61.938 60.000 24.80 0.00 0.00 4.45
37 38 0.962356 AGCCGGCATTTGAGAACAGG 60.962 55.000 31.54 0.00 0.00 4.00
38 39 0.449388 GAGCCGGCATTTGAGAACAG 59.551 55.000 31.54 0.00 0.00 3.16
39 40 0.960364 GGAGCCGGCATTTGAGAACA 60.960 55.000 31.54 0.00 0.00 3.18
40 41 1.803289 GGAGCCGGCATTTGAGAAC 59.197 57.895 31.54 7.56 0.00 3.01
41 42 1.745115 CGGAGCCGGCATTTGAGAA 60.745 57.895 31.54 0.00 35.56 2.87
42 43 2.125147 CGGAGCCGGCATTTGAGA 60.125 61.111 31.54 0.00 35.56 3.27
43 44 2.436646 ACGGAGCCGGCATTTGAG 60.437 61.111 31.54 15.48 44.69 3.02
51 52 3.499737 GCACAATGACGGAGCCGG 61.500 66.667 14.07 0.00 44.69 6.13
52 53 2.741985 TGCACAATGACGGAGCCG 60.742 61.111 7.48 7.48 46.03 5.52
53 54 1.965930 TGTGCACAATGACGGAGCC 60.966 57.895 19.28 0.00 0.00 4.70
54 55 1.207593 GTGTGCACAATGACGGAGC 59.792 57.895 23.59 1.26 0.00 4.70
55 56 1.135888 CATGTGTGCACAATGACGGAG 60.136 52.381 23.59 2.09 45.41 4.63
56 57 0.873721 CATGTGTGCACAATGACGGA 59.126 50.000 23.59 0.00 45.41 4.69
57 58 0.592637 ACATGTGTGCACAATGACGG 59.407 50.000 31.08 18.61 45.41 4.79
58 59 2.480037 AGTACATGTGTGCACAATGACG 59.520 45.455 31.08 19.05 45.41 4.35
59 60 3.748048 AGAGTACATGTGTGCACAATGAC 59.252 43.478 31.08 25.28 45.41 3.06
60 61 3.996363 GAGAGTACATGTGTGCACAATGA 59.004 43.478 31.08 18.32 45.41 2.57
61 62 3.999001 AGAGAGTACATGTGTGCACAATG 59.001 43.478 23.59 25.55 45.41 2.82
62 63 4.277515 AGAGAGTACATGTGTGCACAAT 57.722 40.909 23.59 14.32 45.41 2.71
63 64 3.751479 AGAGAGTACATGTGTGCACAA 57.249 42.857 23.59 12.53 45.41 3.33
64 65 3.069443 TGAAGAGAGTACATGTGTGCACA 59.931 43.478 17.42 17.42 46.44 4.57
65 66 3.653344 TGAAGAGAGTACATGTGTGCAC 58.347 45.455 10.75 10.75 32.87 4.57
66 67 4.541973 ATGAAGAGAGTACATGTGTGCA 57.458 40.909 9.11 0.00 32.87 4.57
67 68 4.331168 GGAATGAAGAGAGTACATGTGTGC 59.669 45.833 9.11 0.00 0.00 4.57
68 69 5.728471 AGGAATGAAGAGAGTACATGTGTG 58.272 41.667 9.11 0.00 0.00 3.82
69 70 7.482169 TTAGGAATGAAGAGAGTACATGTGT 57.518 36.000 9.11 0.00 0.00 3.72
70 71 8.954950 ATTTAGGAATGAAGAGAGTACATGTG 57.045 34.615 9.11 0.00 0.00 3.21
101 102 9.567776 TGGTTTGTAATGAAATCTCTACAAAGA 57.432 29.630 15.03 7.51 42.09 2.52
102 103 9.612620 GTGGTTTGTAATGAAATCTCTACAAAG 57.387 33.333 15.03 0.00 42.09 2.77
103 104 9.126151 TGTGGTTTGTAATGAAATCTCTACAAA 57.874 29.630 12.53 12.53 40.27 2.83
104 105 8.684386 TGTGGTTTGTAATGAAATCTCTACAA 57.316 30.769 0.00 0.00 33.57 2.41
105 106 8.862325 ATGTGGTTTGTAATGAAATCTCTACA 57.138 30.769 0.00 0.00 0.00 2.74
136 137 9.017509 CCACATTCTAAAGTGCATCCATATATT 57.982 33.333 0.00 0.00 34.48 1.28
137 138 8.385491 TCCACATTCTAAAGTGCATCCATATAT 58.615 33.333 0.00 0.00 34.48 0.86
138 139 7.744733 TCCACATTCTAAAGTGCATCCATATA 58.255 34.615 0.00 0.00 34.48 0.86
139 140 6.604171 TCCACATTCTAAAGTGCATCCATAT 58.396 36.000 0.00 0.00 34.48 1.78
140 141 6.000246 TCCACATTCTAAAGTGCATCCATA 58.000 37.500 0.00 0.00 34.48 2.74
141 142 4.858850 TCCACATTCTAAAGTGCATCCAT 58.141 39.130 0.00 0.00 34.48 3.41
142 143 4.299586 TCCACATTCTAAAGTGCATCCA 57.700 40.909 0.00 0.00 34.48 3.41
143 144 5.357878 TGAATCCACATTCTAAAGTGCATCC 59.642 40.000 0.00 0.00 39.49 3.51
144 145 6.094603 AGTGAATCCACATTCTAAAGTGCATC 59.905 38.462 0.00 0.00 45.54 3.91
145 146 5.948162 AGTGAATCCACATTCTAAAGTGCAT 59.052 36.000 0.00 0.00 45.54 3.96
146 147 5.316167 AGTGAATCCACATTCTAAAGTGCA 58.684 37.500 0.00 0.00 45.54 4.57
147 148 5.886960 AGTGAATCCACATTCTAAAGTGC 57.113 39.130 0.00 0.00 45.54 4.40
151 152 9.638239 GCAAAATAAGTGAATCCACATTCTAAA 57.362 29.630 0.00 0.00 45.54 1.85
152 153 9.023962 AGCAAAATAAGTGAATCCACATTCTAA 57.976 29.630 0.00 0.00 45.54 2.10
153 154 8.579850 AGCAAAATAAGTGAATCCACATTCTA 57.420 30.769 0.00 0.00 45.54 2.10
154 155 7.363268 GGAGCAAAATAAGTGAATCCACATTCT 60.363 37.037 0.00 0.00 45.54 2.40
155 156 6.753744 GGAGCAAAATAAGTGAATCCACATTC 59.246 38.462 0.00 0.00 45.54 2.67
156 157 6.211184 TGGAGCAAAATAAGTGAATCCACATT 59.789 34.615 0.00 0.00 45.54 2.71
157 158 5.716228 TGGAGCAAAATAAGTGAATCCACAT 59.284 36.000 0.00 0.00 45.54 3.21
158 159 5.076182 TGGAGCAAAATAAGTGAATCCACA 58.924 37.500 0.00 0.00 45.54 4.17
159 160 5.643379 TGGAGCAAAATAAGTGAATCCAC 57.357 39.130 0.00 0.00 43.50 4.02
160 161 9.812347 ATATATGGAGCAAAATAAGTGAATCCA 57.188 29.630 0.00 0.00 37.62 3.41
165 166 9.944376 GGACTATATATGGAGCAAAATAAGTGA 57.056 33.333 2.68 0.00 0.00 3.41
166 167 8.873830 CGGACTATATATGGAGCAAAATAAGTG 58.126 37.037 2.68 0.00 0.00 3.16
167 168 8.594550 ACGGACTATATATGGAGCAAAATAAGT 58.405 33.333 2.68 0.00 0.00 2.24
170 171 9.251440 ACTACGGACTATATATGGAGCAAAATA 57.749 33.333 2.68 0.00 0.00 1.40
171 172 8.035394 CACTACGGACTATATATGGAGCAAAAT 58.965 37.037 2.68 0.00 0.00 1.82
172 173 7.231925 TCACTACGGACTATATATGGAGCAAAA 59.768 37.037 2.68 0.00 0.00 2.44
173 174 6.717997 TCACTACGGACTATATATGGAGCAAA 59.282 38.462 2.68 0.00 0.00 3.68
174 175 6.243148 TCACTACGGACTATATATGGAGCAA 58.757 40.000 2.68 0.00 0.00 3.91
175 176 5.812286 TCACTACGGACTATATATGGAGCA 58.188 41.667 2.68 0.00 0.00 4.26
176 177 6.754702 TTCACTACGGACTATATATGGAGC 57.245 41.667 2.68 0.00 0.00 4.70
177 178 9.179909 AGATTTCACTACGGACTATATATGGAG 57.820 37.037 2.68 0.00 0.00 3.86
178 179 9.175312 GAGATTTCACTACGGACTATATATGGA 57.825 37.037 2.68 0.00 0.00 3.41
179 180 9.179909 AGAGATTTCACTACGGACTATATATGG 57.820 37.037 0.00 0.00 0.00 2.74
180 181 9.995957 CAGAGATTTCACTACGGACTATATATG 57.004 37.037 0.00 0.00 0.00 1.78
181 182 8.679100 GCAGAGATTTCACTACGGACTATATAT 58.321 37.037 0.00 0.00 0.00 0.86
182 183 7.664318 TGCAGAGATTTCACTACGGACTATATA 59.336 37.037 0.00 0.00 0.00 0.86
183 184 6.490381 TGCAGAGATTTCACTACGGACTATAT 59.510 38.462 0.00 0.00 0.00 0.86
184 185 5.826208 TGCAGAGATTTCACTACGGACTATA 59.174 40.000 0.00 0.00 0.00 1.31
185 186 4.645136 TGCAGAGATTTCACTACGGACTAT 59.355 41.667 0.00 0.00 0.00 2.12
186 187 4.014406 TGCAGAGATTTCACTACGGACTA 58.986 43.478 0.00 0.00 0.00 2.59
187 188 2.826128 TGCAGAGATTTCACTACGGACT 59.174 45.455 0.00 0.00 0.00 3.85
188 189 3.232213 TGCAGAGATTTCACTACGGAC 57.768 47.619 0.00 0.00 0.00 4.79
189 190 3.953712 TTGCAGAGATTTCACTACGGA 57.046 42.857 0.00 0.00 0.00 4.69
190 191 4.092091 GTCTTTGCAGAGATTTCACTACGG 59.908 45.833 10.53 0.00 0.00 4.02
191 192 4.926238 AGTCTTTGCAGAGATTTCACTACG 59.074 41.667 10.53 0.00 0.00 3.51
192 193 6.203723 ACAAGTCTTTGCAGAGATTTCACTAC 59.796 38.462 10.53 0.00 37.85 2.73
193 194 6.291377 ACAAGTCTTTGCAGAGATTTCACTA 58.709 36.000 10.53 0.00 37.85 2.74
194 195 5.128919 ACAAGTCTTTGCAGAGATTTCACT 58.871 37.500 10.53 0.00 37.85 3.41
195 196 5.429957 ACAAGTCTTTGCAGAGATTTCAC 57.570 39.130 10.53 0.00 37.85 3.18
196 197 7.750229 AATACAAGTCTTTGCAGAGATTTCA 57.250 32.000 10.53 3.41 37.85 2.69
197 198 9.766277 CTAAATACAAGTCTTTGCAGAGATTTC 57.234 33.333 10.53 0.00 37.85 2.17
198 199 9.507329 TCTAAATACAAGTCTTTGCAGAGATTT 57.493 29.630 10.53 9.66 37.85 2.17
199 200 9.507329 TTCTAAATACAAGTCTTTGCAGAGATT 57.493 29.630 10.53 3.04 37.85 2.40
200 201 9.507329 TTTCTAAATACAAGTCTTTGCAGAGAT 57.493 29.630 10.53 0.00 37.85 2.75
201 202 8.902540 TTTCTAAATACAAGTCTTTGCAGAGA 57.097 30.769 2.15 2.15 37.85 3.10
202 203 9.552114 CATTTCTAAATACAAGTCTTTGCAGAG 57.448 33.333 0.00 0.00 37.85 3.35
203 204 9.283768 TCATTTCTAAATACAAGTCTTTGCAGA 57.716 29.630 0.00 0.00 37.85 4.26
204 205 9.897744 TTCATTTCTAAATACAAGTCTTTGCAG 57.102 29.630 0.00 0.00 37.85 4.41
205 206 9.897744 CTTCATTTCTAAATACAAGTCTTTGCA 57.102 29.630 0.00 0.00 37.85 4.08
206 207 9.346725 CCTTCATTTCTAAATACAAGTCTTTGC 57.653 33.333 0.00 0.00 37.85 3.68
207 208 9.846248 CCCTTCATTTCTAAATACAAGTCTTTG 57.154 33.333 0.00 0.00 40.24 2.77
208 209 9.807921 TCCCTTCATTTCTAAATACAAGTCTTT 57.192 29.630 0.00 0.00 0.00 2.52
209 210 9.454859 CTCCCTTCATTTCTAAATACAAGTCTT 57.545 33.333 0.00 0.00 0.00 3.01
210 211 8.606830 ACTCCCTTCATTTCTAAATACAAGTCT 58.393 33.333 0.00 0.00 0.00 3.24
211 212 8.669243 CACTCCCTTCATTTCTAAATACAAGTC 58.331 37.037 0.00 0.00 0.00 3.01
212 213 8.164070 ACACTCCCTTCATTTCTAAATACAAGT 58.836 33.333 0.00 0.00 0.00 3.16
213 214 8.567285 ACACTCCCTTCATTTCTAAATACAAG 57.433 34.615 0.00 0.00 0.00 3.16
218 219 8.523658 GCTTTTACACTCCCTTCATTTCTAAAT 58.476 33.333 0.00 0.00 0.00 1.40
219 220 7.504238 TGCTTTTACACTCCCTTCATTTCTAAA 59.496 33.333 0.00 0.00 0.00 1.85
220 221 7.001674 TGCTTTTACACTCCCTTCATTTCTAA 58.998 34.615 0.00 0.00 0.00 2.10
221 222 6.539173 TGCTTTTACACTCCCTTCATTTCTA 58.461 36.000 0.00 0.00 0.00 2.10
222 223 5.385198 TGCTTTTACACTCCCTTCATTTCT 58.615 37.500 0.00 0.00 0.00 2.52
223 224 5.705609 TGCTTTTACACTCCCTTCATTTC 57.294 39.130 0.00 0.00 0.00 2.17
224 225 5.185828 GGATGCTTTTACACTCCCTTCATTT 59.814 40.000 0.00 0.00 0.00 2.32
225 226 4.706962 GGATGCTTTTACACTCCCTTCATT 59.293 41.667 0.00 0.00 0.00 2.57
226 227 4.263905 TGGATGCTTTTACACTCCCTTCAT 60.264 41.667 0.00 0.00 0.00 2.57
227 228 3.073798 TGGATGCTTTTACACTCCCTTCA 59.926 43.478 0.00 0.00 0.00 3.02
228 229 3.686016 TGGATGCTTTTACACTCCCTTC 58.314 45.455 0.00 0.00 0.00 3.46
229 230 3.806949 TGGATGCTTTTACACTCCCTT 57.193 42.857 0.00 0.00 0.00 3.95
230 231 5.653255 ATATGGATGCTTTTACACTCCCT 57.347 39.130 0.00 0.00 0.00 4.20
231 232 7.817418 TTAATATGGATGCTTTTACACTCCC 57.183 36.000 0.00 0.00 0.00 4.30
232 233 8.903820 ACTTTAATATGGATGCTTTTACACTCC 58.096 33.333 0.00 0.00 0.00 3.85
233 234 9.722056 CACTTTAATATGGATGCTTTTACACTC 57.278 33.333 0.00 0.00 0.00 3.51
234 235 9.243105 ACACTTTAATATGGATGCTTTTACACT 57.757 29.630 0.00 0.00 0.00 3.55
298 299 8.671384 AAACCAAAGAAGGCCTTAATAAAAAC 57.329 30.769 20.54 2.82 34.00 2.43
299 300 9.990360 CTAAACCAAAGAAGGCCTTAATAAAAA 57.010 29.630 20.54 0.00 34.00 1.94
300 301 9.369672 TCTAAACCAAAGAAGGCCTTAATAAAA 57.630 29.630 20.54 0.00 34.00 1.52
302 303 8.387813 TCTCTAAACCAAAGAAGGCCTTAATAA 58.612 33.333 20.54 0.00 34.00 1.40
304 305 6.790319 TCTCTAAACCAAAGAAGGCCTTAAT 58.210 36.000 20.54 7.52 34.00 1.40
307 308 4.724279 TCTCTAAACCAAAGAAGGCCTT 57.276 40.909 20.65 20.65 36.47 4.35
308 309 4.724279 TTCTCTAAACCAAAGAAGGCCT 57.276 40.909 0.00 0.00 0.00 5.19
309 310 5.984695 ATTTCTCTAAACCAAAGAAGGCC 57.015 39.130 0.00 0.00 31.16 5.19
310 311 9.929180 ATAAAATTTCTCTAAACCAAAGAAGGC 57.071 29.630 0.00 0.00 31.16 4.35
356 357 7.136822 ACCAAAAGGCTCTAAAGGAATTTTT 57.863 32.000 0.00 0.00 0.00 1.94
357 358 6.747414 ACCAAAAGGCTCTAAAGGAATTTT 57.253 33.333 0.00 0.00 0.00 1.82
358 359 6.747414 AACCAAAAGGCTCTAAAGGAATTT 57.253 33.333 0.00 0.00 0.00 1.82
359 360 6.099701 ACAAACCAAAAGGCTCTAAAGGAATT 59.900 34.615 0.00 0.00 0.00 2.17
360 361 5.602561 ACAAACCAAAAGGCTCTAAAGGAAT 59.397 36.000 0.00 0.00 0.00 3.01
361 362 4.959839 ACAAACCAAAAGGCTCTAAAGGAA 59.040 37.500 0.00 0.00 0.00 3.36
362 363 4.542697 ACAAACCAAAAGGCTCTAAAGGA 58.457 39.130 0.00 0.00 0.00 3.36
363 364 4.937201 ACAAACCAAAAGGCTCTAAAGG 57.063 40.909 0.00 0.00 0.00 3.11
364 365 5.768164 TCCTACAAACCAAAAGGCTCTAAAG 59.232 40.000 0.00 0.00 0.00 1.85
365 366 5.697067 TCCTACAAACCAAAAGGCTCTAAA 58.303 37.500 0.00 0.00 0.00 1.85
366 367 5.313280 TCCTACAAACCAAAAGGCTCTAA 57.687 39.130 0.00 0.00 0.00 2.10
367 368 4.986054 TCCTACAAACCAAAAGGCTCTA 57.014 40.909 0.00 0.00 0.00 2.43
368 369 3.876309 TCCTACAAACCAAAAGGCTCT 57.124 42.857 0.00 0.00 0.00 4.09
369 370 4.321974 CCATTCCTACAAACCAAAAGGCTC 60.322 45.833 0.00 0.00 0.00 4.70
370 371 3.578282 CCATTCCTACAAACCAAAAGGCT 59.422 43.478 0.00 0.00 0.00 4.58
371 372 3.576550 TCCATTCCTACAAACCAAAAGGC 59.423 43.478 0.00 0.00 0.00 4.35
372 373 5.799827 TTCCATTCCTACAAACCAAAAGG 57.200 39.130 0.00 0.00 0.00 3.11
373 374 6.211384 AGGATTCCATTCCTACAAACCAAAAG 59.789 38.462 5.29 0.00 44.50 2.27
374 375 6.081356 AGGATTCCATTCCTACAAACCAAAA 58.919 36.000 5.29 0.00 44.50 2.44
375 376 5.650283 AGGATTCCATTCCTACAAACCAAA 58.350 37.500 5.29 0.00 44.50 3.28
376 377 5.269554 AGGATTCCATTCCTACAAACCAA 57.730 39.130 5.29 0.00 44.50 3.67
377 378 4.946160 AGGATTCCATTCCTACAAACCA 57.054 40.909 5.29 0.00 44.50 3.67
402 403 8.654997 TGGAGATAGAAAGAATTCCTTCATAGG 58.345 37.037 17.08 0.00 43.46 2.57
471 472 8.411683 GCTCTTTGATTCACATCATAGGATTTT 58.588 33.333 0.00 0.00 39.28 1.82
472 473 7.558807 TGCTCTTTGATTCACATCATAGGATTT 59.441 33.333 0.00 0.00 39.28 2.17
473 474 7.058525 TGCTCTTTGATTCACATCATAGGATT 58.941 34.615 0.00 0.00 39.28 3.01
474 475 6.598503 TGCTCTTTGATTCACATCATAGGAT 58.401 36.000 3.71 0.00 39.28 3.24
475 476 5.993055 TGCTCTTTGATTCACATCATAGGA 58.007 37.500 3.71 0.00 39.28 2.94
476 477 6.711194 AGATGCTCTTTGATTCACATCATAGG 59.289 38.462 13.54 0.00 39.28 2.57
477 478 7.731882 AGATGCTCTTTGATTCACATCATAG 57.268 36.000 13.54 1.94 39.28 2.23
478 479 9.788889 ATAAGATGCTCTTTGATTCACATCATA 57.211 29.630 13.54 8.41 39.28 2.15
479 480 8.693120 ATAAGATGCTCTTTGATTCACATCAT 57.307 30.769 13.54 6.93 39.28 2.45
480 481 8.515695 AATAAGATGCTCTTTGATTCACATCA 57.484 30.769 13.54 0.00 37.89 3.07
481 482 9.448294 GAAATAAGATGCTCTTTGATTCACATC 57.552 33.333 6.23 6.23 37.89 3.06
482 483 8.411683 GGAAATAAGATGCTCTTTGATTCACAT 58.588 33.333 4.15 0.00 37.89 3.21
483 484 7.613022 AGGAAATAAGATGCTCTTTGATTCACA 59.387 33.333 4.15 0.00 37.89 3.58
484 485 7.994194 AGGAAATAAGATGCTCTTTGATTCAC 58.006 34.615 4.15 3.29 37.89 3.18
485 486 9.857656 ATAGGAAATAAGATGCTCTTTGATTCA 57.142 29.630 4.15 0.00 37.89 2.57
489 490 9.911788 AGAAATAGGAAATAAGATGCTCTTTGA 57.088 29.630 4.15 0.00 37.89 2.69
494 495 9.988815 TGAGTAGAAATAGGAAATAAGATGCTC 57.011 33.333 0.00 0.00 0.00 4.26
513 514 9.593565 ACATGTATCTCAAATCCTATGAGTAGA 57.406 33.333 0.00 0.00 43.77 2.59
514 515 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
515 516 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
516 517 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
517 518 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
518 519 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
519 520 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
534 535 9.458727 AAAGTCATAGAAAATGAGATGACATGT 57.541 29.630 14.37 0.00 46.94 3.21
535 536 9.932699 GAAAGTCATAGAAAATGAGATGACATG 57.067 33.333 14.37 0.00 46.94 3.21
536 537 9.118300 GGAAAGTCATAGAAAATGAGATGACAT 57.882 33.333 14.37 1.96 46.94 3.06
537 538 8.324306 AGGAAAGTCATAGAAAATGAGATGACA 58.676 33.333 14.37 0.00 46.94 3.58
538 539 8.729805 AGGAAAGTCATAGAAAATGAGATGAC 57.270 34.615 5.86 5.86 45.57 3.06
550 551 9.575868 AGATCGTAGAAATAGGAAAGTCATAGA 57.424 33.333 0.00 0.00 43.58 1.98
553 554 9.319143 CAAAGATCGTAGAAATAGGAAAGTCAT 57.681 33.333 0.00 0.00 43.58 3.06
554 555 8.311836 ACAAAGATCGTAGAAATAGGAAAGTCA 58.688 33.333 0.00 0.00 43.58 3.41
555 556 8.705048 ACAAAGATCGTAGAAATAGGAAAGTC 57.295 34.615 0.00 0.00 43.58 3.01
556 557 9.583765 GTACAAAGATCGTAGAAATAGGAAAGT 57.416 33.333 0.00 0.00 43.58 2.66
557 558 9.032420 GGTACAAAGATCGTAGAAATAGGAAAG 57.968 37.037 0.00 0.00 43.58 2.62
558 559 8.755977 AGGTACAAAGATCGTAGAAATAGGAAA 58.244 33.333 0.00 0.00 43.58 3.13
559 560 8.302515 AGGTACAAAGATCGTAGAAATAGGAA 57.697 34.615 0.00 0.00 43.58 3.36
560 561 7.893124 AGGTACAAAGATCGTAGAAATAGGA 57.107 36.000 0.00 0.00 43.58 2.94
566 567 9.745880 GATTCATAAGGTACAAAGATCGTAGAA 57.254 33.333 0.00 0.00 43.58 2.10
567 568 8.909923 TGATTCATAAGGTACAAAGATCGTAGA 58.090 33.333 0.00 0.00 45.75 2.59
568 569 9.529325 TTGATTCATAAGGTACAAAGATCGTAG 57.471 33.333 0.00 0.00 0.00 3.51
569 570 9.878667 TTTGATTCATAAGGTACAAAGATCGTA 57.121 29.630 0.00 0.00 0.00 3.43
570 571 8.786826 TTTGATTCATAAGGTACAAAGATCGT 57.213 30.769 0.00 0.00 0.00 3.73
571 572 8.338259 CCTTTGATTCATAAGGTACAAAGATCG 58.662 37.037 15.71 0.49 43.47 3.69
572 573 9.396022 TCCTTTGATTCATAAGGTACAAAGATC 57.604 33.333 18.76 0.00 43.47 2.75
573 574 9.401058 CTCCTTTGATTCATAAGGTACAAAGAT 57.599 33.333 18.76 0.00 43.47 2.40
574 575 8.383175 ACTCCTTTGATTCATAAGGTACAAAGA 58.617 33.333 18.76 4.99 43.47 2.52
575 576 8.567285 ACTCCTTTGATTCATAAGGTACAAAG 57.433 34.615 18.76 0.00 41.36 2.77
576 577 7.610305 GGACTCCTTTGATTCATAAGGTACAAA 59.390 37.037 18.76 0.00 41.36 2.83
577 578 7.037586 AGGACTCCTTTGATTCATAAGGTACAA 60.038 37.037 18.76 0.00 41.36 2.41
578 579 6.443849 AGGACTCCTTTGATTCATAAGGTACA 59.556 38.462 18.76 7.10 41.36 2.90
579 580 6.890293 AGGACTCCTTTGATTCATAAGGTAC 58.110 40.000 18.76 13.72 41.36 3.34
580 581 8.618240 TTAGGACTCCTTTGATTCATAAGGTA 57.382 34.615 18.76 10.48 41.36 3.08
581 582 7.510675 TTAGGACTCCTTTGATTCATAAGGT 57.489 36.000 18.76 8.08 41.36 3.50
582 583 8.807948 TTTTAGGACTCCTTTGATTCATAAGG 57.192 34.615 1.94 15.72 41.86 2.69
591 592 9.947433 TCGTTTATATTTTTAGGACTCCTTTGA 57.053 29.630 1.94 0.00 34.61 2.69
592 593 9.983804 GTCGTTTATATTTTTAGGACTCCTTTG 57.016 33.333 1.94 0.00 34.61 2.77
593 594 9.955102 AGTCGTTTATATTTTTAGGACTCCTTT 57.045 29.630 1.94 0.00 32.14 3.11
594 595 9.955102 AAGTCGTTTATATTTTTAGGACTCCTT 57.045 29.630 1.94 0.00 35.42 3.36
595 596 9.597170 GAAGTCGTTTATATTTTTAGGACTCCT 57.403 33.333 2.31 2.31 35.42 3.69
596 597 8.824781 GGAAGTCGTTTATATTTTTAGGACTCC 58.175 37.037 0.00 0.00 35.42 3.85
597 598 9.374838 TGGAAGTCGTTTATATTTTTAGGACTC 57.625 33.333 0.00 0.00 35.42 3.36
598 599 9.901172 ATGGAAGTCGTTTATATTTTTAGGACT 57.099 29.630 0.00 0.00 37.34 3.85
600 601 9.037737 CGATGGAAGTCGTTTATATTTTTAGGA 57.962 33.333 0.00 0.00 36.88 2.94
601 602 7.797123 GCGATGGAAGTCGTTTATATTTTTAGG 59.203 37.037 0.00 0.00 43.27 2.69
602 603 8.548721 AGCGATGGAAGTCGTTTATATTTTTAG 58.451 33.333 0.00 0.00 43.27 1.85
603 604 8.428186 AGCGATGGAAGTCGTTTATATTTTTA 57.572 30.769 0.00 0.00 43.27 1.52
604 605 7.316544 AGCGATGGAAGTCGTTTATATTTTT 57.683 32.000 0.00 0.00 43.27 1.94
605 606 6.018180 GGAGCGATGGAAGTCGTTTATATTTT 60.018 38.462 0.00 0.00 43.27 1.82
606 607 5.465724 GGAGCGATGGAAGTCGTTTATATTT 59.534 40.000 0.00 0.00 43.27 1.40
607 608 4.989168 GGAGCGATGGAAGTCGTTTATATT 59.011 41.667 0.00 0.00 43.27 1.28
608 609 4.038763 TGGAGCGATGGAAGTCGTTTATAT 59.961 41.667 0.00 0.00 43.27 0.86
609 610 3.382227 TGGAGCGATGGAAGTCGTTTATA 59.618 43.478 0.00 0.00 43.27 0.98
610 611 2.167693 TGGAGCGATGGAAGTCGTTTAT 59.832 45.455 0.00 0.00 43.27 1.40
611 612 1.546923 TGGAGCGATGGAAGTCGTTTA 59.453 47.619 0.00 0.00 43.27 2.01
662 666 6.182627 TGAAAATCGTACTGGTAGTAGGAGA 58.817 40.000 14.30 5.00 45.24 3.71
700 704 8.492673 TGCATGTCTTCTTTCTTCGTTATAAT 57.507 30.769 0.00 0.00 0.00 1.28
707 978 6.804232 CAAAATTGCATGTCTTCTTTCTTCG 58.196 36.000 0.00 0.00 0.00 3.79
830 1109 3.006756 GCCGTGAGCTCCTGCAGTA 62.007 63.158 13.81 0.00 42.74 2.74
838 1117 2.781595 TTTTCTCGGGCCGTGAGCTC 62.782 60.000 27.01 6.82 43.05 4.09
898 1177 2.284625 TGATGGGCTCCGTCCAGT 60.285 61.111 10.00 0.00 42.12 4.00
976 1255 1.247419 ACACCTCGCTCTCCACTCTG 61.247 60.000 0.00 0.00 0.00 3.35
1309 1590 1.268184 GGACCCGTTCGTGAAACAAAC 60.268 52.381 0.00 0.00 37.77 2.93
1314 1595 1.368579 GAGGGACCCGTTCGTGAAA 59.631 57.895 4.40 0.00 0.00 2.69
1351 1640 4.785453 CAGAACCGCCCTCCTGCC 62.785 72.222 0.00 0.00 0.00 4.85
1353 1642 1.903877 ATCACAGAACCGCCCTCCTG 61.904 60.000 0.00 0.00 0.00 3.86
1366 1655 3.553508 CCCTGAAGTTGGCAAAATCACAG 60.554 47.826 0.00 7.70 0.00 3.66
1401 1690 4.674281 AAGAGGAAGACGAAGACAAGTT 57.326 40.909 0.00 0.00 0.00 2.66
1404 1694 4.119862 CACAAAGAGGAAGACGAAGACAA 58.880 43.478 0.00 0.00 0.00 3.18
1482 1775 4.069232 TCGGCAGGGAGCTTCACG 62.069 66.667 0.00 0.00 44.79 4.35
1512 1805 0.290840 CGTAGAATGCAACGACGACG 59.709 55.000 18.94 5.58 41.55 5.12
1578 1871 4.384846 CAGCATGTTCTTGAACTGATTTGC 59.615 41.667 13.65 13.15 0.00 3.68
1586 1879 3.002791 TCGGATCAGCATGTTCTTGAAC 58.997 45.455 6.56 6.56 35.23 3.18
1592 1885 1.661341 AGCTTCGGATCAGCATGTTC 58.339 50.000 6.33 0.00 39.99 3.18
1601 1894 4.376146 AGCATCTTCTTTAGCTTCGGATC 58.624 43.478 0.00 0.00 32.52 3.36
2057 2407 4.009675 CAAAGATCTCGGAATGACCCAAA 58.990 43.478 0.00 0.00 34.64 3.28
2549 2901 2.362717 GTGGCAGTAGGAGTAGGACATC 59.637 54.545 0.00 0.00 0.00 3.06
2645 2997 1.064621 GTCGCCGCCGTACTTCATA 59.935 57.895 0.00 0.00 35.54 2.15
2976 3338 1.676014 CGGATGGTCCAAGGAGACAAC 60.676 57.143 0.00 0.00 38.59 3.32
2998 3360 4.283337 TGAATTGATCATCAATGGCAGGT 58.717 39.130 13.83 0.00 45.57 4.00
3038 3409 0.833287 TGATGGGACTAGGAGCAAGC 59.167 55.000 0.00 0.00 0.00 4.01
3231 3659 3.445687 CATGCATGTGCCGCCACT 61.446 61.111 18.91 0.00 42.54 4.00
3467 3903 2.815647 GTGTACCTCGCCTGCAGC 60.816 66.667 8.66 2.87 38.52 5.25
3511 3947 3.560503 GATCGTGTACATAGCAGCTCTC 58.439 50.000 0.00 0.00 0.00 3.20
3512 3948 2.031595 CGATCGTGTACATAGCAGCTCT 60.032 50.000 7.03 0.00 0.00 4.09
3513 3949 2.311462 CGATCGTGTACATAGCAGCTC 58.689 52.381 7.03 0.00 0.00 4.09
3514 3950 1.600663 GCGATCGTGTACATAGCAGCT 60.601 52.381 17.81 0.00 0.00 4.24
3532 3968 2.538037 TCGATCCAATTATGTTCGTGCG 59.462 45.455 7.22 0.00 34.06 5.34
3570 4006 5.391950 CCCAAATTCTACGAACAATCACTGG 60.392 44.000 0.00 0.00 0.00 4.00
3612 4048 1.308998 CCACCAGCACGTTTCTTCTT 58.691 50.000 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.