Multiple sequence alignment - TraesCS5A01G202900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G202900 chr5A 100.000 8807 0 0 1 8807 410515703 410506897 0.000000e+00 16264.0
1 TraesCS5A01G202900 chr5A 94.944 178 7 2 5239 5414 382566802 382566625 2.420000e-70 278.0
2 TraesCS5A01G202900 chr5D 96.084 3013 82 18 5809 8807 315933884 315930894 0.000000e+00 4878.0
3 TraesCS5A01G202900 chr5D 92.563 2259 109 18 748 2953 315938140 315935888 0.000000e+00 3186.0
4 TraesCS5A01G202900 chr5D 92.849 895 50 6 4355 5242 315935152 315934265 0.000000e+00 1286.0
5 TraesCS5A01G202900 chr5D 93.159 687 32 2 3680 4355 315935875 315935193 0.000000e+00 994.0
6 TraesCS5A01G202900 chr5D 96.988 166 5 0 5239 5404 274578176 274578011 6.730000e-71 279.0
7 TraesCS5A01G202900 chr5D 86.047 258 28 5 2612 2864 287806768 287807022 4.050000e-68 270.0
8 TraesCS5A01G202900 chr5D 95.385 130 4 1 5402 5531 315934268 315934141 1.160000e-48 206.0
9 TraesCS5A01G202900 chr5D 93.519 108 3 2 5517 5624 315933986 315933883 3.290000e-34 158.0
10 TraesCS5A01G202900 chr5D 97.260 73 2 0 166 238 315938210 315938138 3.340000e-24 124.0
11 TraesCS5A01G202900 chr5D 89.320 103 6 3 5668 5766 491004700 491004599 3.340000e-24 124.0
12 TraesCS5A01G202900 chr5D 90.722 97 3 3 5668 5764 528145962 528145872 3.340000e-24 124.0
13 TraesCS5A01G202900 chr5D 94.000 50 3 0 5621 5670 414071133 414071182 9.480000e-10 76.8
14 TraesCS5A01G202900 chr5B 92.534 3027 156 30 5809 8807 364137517 364134533 0.000000e+00 4274.0
15 TraesCS5A01G202900 chr5B 91.640 2213 112 28 748 2896 364141705 364139502 0.000000e+00 2994.0
16 TraesCS5A01G202900 chr5B 94.333 900 37 5 4355 5242 364138628 364137731 0.000000e+00 1367.0
17 TraesCS5A01G202900 chr5B 92.555 685 38 6 3680 4355 364139349 364138669 0.000000e+00 970.0
18 TraesCS5A01G202900 chr5B 92.664 518 27 7 239 747 8964432 8964947 0.000000e+00 736.0
19 TraesCS5A01G202900 chr5B 91.313 518 34 5 239 747 543060319 543059804 0.000000e+00 697.0
20 TraesCS5A01G202900 chr5B 92.377 223 13 2 5402 5624 364137734 364137516 1.850000e-81 315.0
21 TraesCS5A01G202900 chr5B 86.434 258 28 6 2612 2864 326916146 326916401 8.710000e-70 276.0
22 TraesCS5A01G202900 chr5B 93.048 187 10 3 5238 5423 6397054 6397238 4.050000e-68 270.0
23 TraesCS5A01G202900 chr5B 94.059 101 6 0 138 238 364141803 364141703 4.260000e-33 154.0
24 TraesCS5A01G202900 chr5B 83.974 156 9 2 4 143 364142195 364142040 1.540000e-27 135.0
25 TraesCS5A01G202900 chr5B 90.625 96 7 1 5670 5765 17982696 17982603 9.280000e-25 126.0
26 TraesCS5A01G202900 chr5B 94.915 59 2 1 2895 2953 364139419 364139362 3.390000e-14 91.6
27 TraesCS5A01G202900 chr4D 98.623 726 10 0 2944 3669 242938234 242938959 0.000000e+00 1286.0
28 TraesCS5A01G202900 chr4D 97.956 734 13 2 2944 3677 47532434 47533165 0.000000e+00 1271.0
29 TraesCS5A01G202900 chr4D 96.471 170 6 0 5239 5408 93338042 93338211 1.870000e-71 281.0
30 TraesCS5A01G202900 chr4D 96.429 168 6 0 5239 5406 75782217 75782050 2.420000e-70 278.0
31 TraesCS5A01G202900 chr4D 96.970 165 5 0 5239 5403 477898795 477898959 2.420000e-70 278.0
32 TraesCS5A01G202900 chr4D 95.322 171 7 1 5236 5406 359125651 359125482 4.050000e-68 270.0
33 TraesCS5A01G202900 chr4D 94.286 175 10 0 5232 5406 344369285 344369111 1.460000e-67 268.0
34 TraesCS5A01G202900 chr4D 94.286 175 10 0 5227 5401 380873317 380873143 1.460000e-67 268.0
35 TraesCS5A01G202900 chr4D 91.837 98 8 0 5667 5764 451274409 451274312 4.290000e-28 137.0
36 TraesCS5A01G202900 chr4D 89.362 94 8 1 5669 5762 16247730 16247821 5.590000e-22 117.0
37 TraesCS5A01G202900 chr4D 100.000 31 0 0 5634 5664 71072765 71072795 3.430000e-04 58.4
38 TraesCS5A01G202900 chr4D 100.000 28 0 0 5621 5648 608902 608875 1.600000e-02 52.8
39 TraesCS5A01G202900 chr4D 100.000 28 0 0 5621 5648 110080933 110080960 1.600000e-02 52.8
40 TraesCS5A01G202900 chr6A 98.347 726 12 0 2944 3669 410902244 410901519 0.000000e+00 1275.0
41 TraesCS5A01G202900 chr6A 90.366 519 39 6 238 747 181597395 181597911 0.000000e+00 671.0
42 TraesCS5A01G202900 chr6A 93.750 176 9 2 5239 5414 276304325 276304152 6.780000e-66 263.0
43 TraesCS5A01G202900 chr2A 98.209 726 13 0 2944 3669 624462963 624462238 0.000000e+00 1269.0
44 TraesCS5A01G202900 chr2A 92.857 98 6 1 5666 5763 727188110 727188206 3.310000e-29 141.0
45 TraesCS5A01G202900 chr1D 98.209 726 13 0 2944 3669 223523842 223524567 0.000000e+00 1269.0
46 TraesCS5A01G202900 chr1D 96.450 169 6 0 5239 5407 178466470 178466302 6.730000e-71 279.0
47 TraesCS5A01G202900 chr1D 96.970 165 5 0 5239 5403 238940380 238940216 2.420000e-70 278.0
48 TraesCS5A01G202900 chr1D 96.407 167 6 0 5238 5404 196817678 196817844 8.710000e-70 276.0
49 TraesCS5A01G202900 chr1D 96.386 166 4 2 5239 5403 201728842 201728678 1.130000e-68 272.0
50 TraesCS5A01G202900 chr1D 96.364 165 6 0 5239 5403 331539429 331539265 1.130000e-68 272.0
51 TraesCS5A01G202900 chr1D 95.808 167 7 0 5239 5405 198055684 198055850 4.050000e-68 270.0
52 TraesCS5A01G202900 chr1D 96.364 165 5 1 5239 5403 360358387 360358224 4.050000e-68 270.0
53 TraesCS5A01G202900 chr1D 95.294 170 8 0 5238 5407 423269672 423269503 4.050000e-68 270.0
54 TraesCS5A01G202900 chr1D 93.258 178 11 1 5239 5415 206955701 206955524 2.440000e-65 261.0
55 TraesCS5A01G202900 chr1D 88.172 93 3 2 5670 5762 276823056 276822972 4.350000e-18 104.0
56 TraesCS5A01G202900 chr1D 86.316 95 5 1 5669 5763 318382793 318382879 7.280000e-16 97.1
57 TraesCS5A01G202900 chr1D 85.263 95 11 2 5670 5762 346867612 346867705 2.620000e-15 95.3
58 TraesCS5A01G202900 chr1D 85.417 96 6 2 5670 5765 58573714 58573627 9.410000e-15 93.5
59 TraesCS5A01G202900 chr1D 84.043 94 7 3 5663 5756 481696681 481696766 5.670000e-12 84.2
60 TraesCS5A01G202900 chr1D 84.043 94 6 3 5670 5763 366246216 366246132 2.040000e-11 82.4
61 TraesCS5A01G202900 chr1D 97.368 38 1 0 5670 5707 6865130 6865093 2.050000e-06 65.8
62 TraesCS5A01G202900 chr1D 95.122 41 2 0 5670 5710 62856587 62856627 2.050000e-06 65.8
63 TraesCS5A01G202900 chr1D 89.091 55 2 3 5621 5673 322033413 322033465 2.050000e-06 65.8
64 TraesCS5A01G202900 chr1D 87.500 56 7 0 5618 5673 414709687 414709742 2.050000e-06 65.8
65 TraesCS5A01G202900 chr1D 100.000 29 0 0 5619 5647 150952273 150952245 4.000000e-03 54.7
66 TraesCS5A01G202900 chr1D 100.000 29 0 0 5620 5648 296487946 296487974 4.000000e-03 54.7
67 TraesCS5A01G202900 chr7D 97.323 747 15 5 2944 3686 465339834 465340579 0.000000e+00 1264.0
68 TraesCS5A01G202900 chr7D 91.506 518 33 5 239 747 409302991 409302476 0.000000e+00 702.0
69 TraesCS5A01G202900 chr7D 96.023 176 5 2 5228 5403 39001458 39001285 1.450000e-72 285.0
70 TraesCS5A01G202900 chr7D 96.450 169 4 2 5239 5406 69592660 69592827 2.420000e-70 278.0
71 TraesCS5A01G202900 chr7D 95.402 174 8 0 5239 5412 192936184 192936011 2.420000e-70 278.0
72 TraesCS5A01G202900 chr7D 90.654 107 7 3 5660 5764 540864132 540864237 1.190000e-28 139.0
73 TraesCS5A01G202900 chr7A 97.817 733 15 1 2944 3676 232384750 232384019 0.000000e+00 1264.0
74 TraesCS5A01G202900 chr3D 98.072 726 14 0 2944 3669 422742414 422743139 0.000000e+00 1264.0
75 TraesCS5A01G202900 chr3D 91.262 515 34 5 239 744 446916934 446917446 0.000000e+00 691.0
76 TraesCS5A01G202900 chr3D 90.135 517 41 6 239 747 368009070 368008556 0.000000e+00 664.0
77 TraesCS5A01G202900 chr3D 94.231 52 2 1 5622 5672 105428602 105428551 2.640000e-10 78.7
78 TraesCS5A01G202900 chr1A 97.174 743 17 2 2944 3686 292062400 292063138 0.000000e+00 1253.0
79 TraesCS5A01G202900 chr1A 85.202 223 26 7 2615 2834 499940479 499940697 1.150000e-53 222.0
80 TraesCS5A01G202900 chr1A 81.749 263 39 8 2610 2867 508735137 508734879 2.490000e-50 211.0
81 TraesCS5A01G202900 chr1A 94.643 56 1 2 5620 5673 23115948 23116003 1.580000e-12 86.1
82 TraesCS5A01G202900 chr1A 91.525 59 5 0 5615 5673 307036832 307036774 2.040000e-11 82.4
83 TraesCS5A01G202900 chr1A 100.000 42 0 0 5624 5665 570138427 570138468 2.640000e-10 78.7
84 TraesCS5A01G202900 chr1A 85.294 68 10 0 5614 5681 7183452 7183385 4.410000e-08 71.3
85 TraesCS5A01G202900 chr1B 91.699 518 32 6 239 747 643459582 643459067 0.000000e+00 708.0
86 TraesCS5A01G202900 chr1B 95.429 175 8 0 5234 5408 628050856 628050682 6.730000e-71 279.0
87 TraesCS5A01G202900 chr7B 90.944 519 39 7 234 747 144818590 144819105 0.000000e+00 691.0
88 TraesCS5A01G202900 chr7B 95.930 172 7 0 5236 5407 725017311 725017482 6.730000e-71 279.0
89 TraesCS5A01G202900 chr7B 92.632 95 7 0 5670 5764 474550588 474550494 4.290000e-28 137.0
90 TraesCS5A01G202900 chr7B 90.000 100 8 1 5668 5767 115289 115192 2.580000e-25 128.0
91 TraesCS5A01G202900 chr7B 88.462 104 10 2 5660 5763 115187 115288 3.340000e-24 124.0
92 TraesCS5A01G202900 chr4A 90.734 518 35 6 239 747 440948797 440949310 0.000000e+00 678.0
93 TraesCS5A01G202900 chr4A 96.970 165 5 0 5239 5403 362067911 362068075 2.420000e-70 278.0
94 TraesCS5A01G202900 chr4A 94.475 181 8 2 5239 5418 582530141 582529962 2.420000e-70 278.0
95 TraesCS5A01G202900 chr4A 95.376 173 6 2 5239 5410 732790026 732790197 3.130000e-69 274.0
96 TraesCS5A01G202900 chr4A 85.659 258 31 4 2612 2865 312683427 312683172 5.240000e-67 267.0
97 TraesCS5A01G202900 chr2B 95.930 172 7 0 5236 5407 174794819 174794990 6.730000e-71 279.0
98 TraesCS5A01G202900 chr6D 96.970 165 5 0 5239 5403 392896975 392897139 2.420000e-70 278.0
99 TraesCS5A01G202900 chr6D 95.882 170 6 1 5239 5407 32865334 32865165 3.130000e-69 274.0
100 TraesCS5A01G202900 chr6D 92.670 191 12 2 5224 5414 206560259 206560447 3.130000e-69 274.0
101 TraesCS5A01G202900 chr6D 89.109 101 8 3 5664 5764 245495098 245495195 1.200000e-23 122.0
102 TraesCS5A01G202900 chr6D 89.899 99 5 4 5669 5766 245495194 245495100 1.200000e-23 122.0
103 TraesCS5A01G202900 chr6D 87.755 98 9 2 5669 5766 245567931 245567837 2.600000e-20 111.0
104 TraesCS5A01G202900 chr6D 88.421 95 8 1 5669 5763 386924960 386924869 2.600000e-20 111.0
105 TraesCS5A01G202900 chr6D 92.405 79 3 1 5687 5762 58433835 58433757 9.350000e-20 110.0
106 TraesCS5A01G202900 chr6D 98.077 52 1 0 5622 5673 319255393 319255342 3.390000e-14 91.6
107 TraesCS5A01G202900 chr6D 91.071 56 4 1 5619 5673 128098185 128098130 3.410000e-09 75.0
108 TraesCS5A01G202900 chr6D 93.023 43 1 2 5623 5664 2490440 2490399 2.650000e-05 62.1
109 TraesCS5A01G202900 chr6D 100.000 32 0 0 5642 5673 263940959 263940928 9.550000e-05 60.2
110 TraesCS5A01G202900 chr6D 87.755 49 4 2 5615 5662 400069395 400069442 1.000000e-03 56.5
111 TraesCS5A01G202900 chr6D 85.714 56 3 4 5620 5672 354905829 354905776 4.000000e-03 54.7
112 TraesCS5A01G202900 chrUn 95.783 166 7 0 5239 5404 365634779 365634614 1.460000e-67 268.0
113 TraesCS5A01G202900 chrUn 95.758 165 7 0 5239 5403 280766298 280766134 5.240000e-67 267.0
114 TraesCS5A01G202900 chrUn 95.758 165 6 1 5239 5403 74544607 74544770 1.890000e-66 265.0
115 TraesCS5A01G202900 chrUn 95.758 165 5 2 5238 5401 130470719 130470882 1.890000e-66 265.0
116 TraesCS5A01G202900 chrUn 95.181 166 8 0 5239 5404 385114104 385114269 6.780000e-66 263.0
117 TraesCS5A01G202900 chrUn 95.181 166 6 2 5239 5403 46186604 46186768 2.440000e-65 261.0
118 TraesCS5A01G202900 chrUn 95.152 165 8 0 5239 5403 99868846 99869010 2.440000e-65 261.0
119 TraesCS5A01G202900 chrUn 95.152 165 8 0 5239 5403 104514360 104514196 2.440000e-65 261.0
120 TraesCS5A01G202900 chrUn 95.152 165 8 0 5239 5403 119229129 119229293 2.440000e-65 261.0
121 TraesCS5A01G202900 chrUn 90.722 97 9 0 5667 5763 26701919 26701823 7.180000e-26 130.0
122 TraesCS5A01G202900 chrUn 89.796 98 7 2 5670 5767 46240342 46240436 1.200000e-23 122.0
123 TraesCS5A01G202900 chrUn 85.567 97 10 1 5670 5762 255060436 255060340 2.020000e-16 99.0
124 TraesCS5A01G202900 chrUn 85.567 97 10 1 5670 5762 269237442 269237346 2.020000e-16 99.0
125 TraesCS5A01G202900 chrUn 84.848 99 9 3 5666 5762 46240436 46240342 2.620000e-15 95.3
126 TraesCS5A01G202900 chrUn 85.106 94 6 2 5671 5764 37403325 37403240 1.220000e-13 89.8
127 TraesCS5A01G202900 chrUn 83.673 98 7 3 5670 5767 29722048 29722136 5.670000e-12 84.2
128 TraesCS5A01G202900 chrUn 93.103 58 2 2 5709 5766 320256150 320256095 5.670000e-12 84.2
129 TraesCS5A01G202900 chrUn 93.103 58 2 2 5709 5766 357700800 357700745 5.670000e-12 84.2
130 TraesCS5A01G202900 chrUn 96.000 50 1 1 5624 5672 48427828 48427877 7.330000e-11 80.5
131 TraesCS5A01G202900 chrUn 90.741 54 4 1 5620 5672 300898629 300898682 4.410000e-08 71.3
132 TraesCS5A01G202900 chr4B 86.345 249 29 3 2612 2856 317763289 317763536 5.240000e-67 267.0
133 TraesCS5A01G202900 chr4B 90.816 98 9 0 5667 5764 564650740 564650643 2.000000e-26 132.0
134 TraesCS5A01G202900 chr4B 88.182 110 6 6 5663 5766 544445271 544445379 3.340000e-24 124.0
135 TraesCS5A01G202900 chr4B 85.965 114 8 6 5664 5771 11736932 11736821 2.010000e-21 115.0
136 TraesCS5A01G202900 chr4B 90.741 54 3 2 5621 5673 25848627 25848679 4.410000e-08 71.3
137 TraesCS5A01G202900 chr4B 94.872 39 2 0 5626 5664 29711615 29711577 2.650000e-05 62.1
138 TraesCS5A01G202900 chr4B 86.538 52 5 2 5623 5673 492223457 492223507 1.000000e-03 56.5
139 TraesCS5A01G202900 chr3A 85.603 257 30 3 2611 2867 186047773 186047524 6.780000e-66 263.0
140 TraesCS5A01G202900 chr2D 91.919 99 7 1 5670 5767 376700827 376700729 4.290000e-28 137.0
141 TraesCS5A01G202900 chr6B 89.899 99 8 1 5666 5762 553058983 553059081 9.280000e-25 126.0
142 TraesCS5A01G202900 chr3B 97.917 48 1 0 5623 5670 187904326 187904279 5.670000e-12 84.2
143 TraesCS5A01G202900 chr3B 94.340 53 3 0 5621 5673 381754759 381754811 2.040000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G202900 chr5A 410506897 410515703 8806 True 16264.000000 16264 100.000000 1 8807 1 chr5A.!!$R2 8806
1 TraesCS5A01G202900 chr5D 315930894 315938210 7316 True 1547.428571 4878 94.402714 166 8807 7 chr5D.!!$R4 8641
2 TraesCS5A01G202900 chr5B 364134533 364142195 7662 True 1287.575000 4274 92.048375 4 8807 8 chr5B.!!$R3 8803
3 TraesCS5A01G202900 chr5B 8964432 8964947 515 False 736.000000 736 92.664000 239 747 1 chr5B.!!$F2 508
4 TraesCS5A01G202900 chr5B 543059804 543060319 515 True 697.000000 697 91.313000 239 747 1 chr5B.!!$R2 508
5 TraesCS5A01G202900 chr4D 242938234 242938959 725 False 1286.000000 1286 98.623000 2944 3669 1 chr4D.!!$F6 725
6 TraesCS5A01G202900 chr4D 47532434 47533165 731 False 1271.000000 1271 97.956000 2944 3677 1 chr4D.!!$F2 733
7 TraesCS5A01G202900 chr6A 410901519 410902244 725 True 1275.000000 1275 98.347000 2944 3669 1 chr6A.!!$R2 725
8 TraesCS5A01G202900 chr6A 181597395 181597911 516 False 671.000000 671 90.366000 238 747 1 chr6A.!!$F1 509
9 TraesCS5A01G202900 chr2A 624462238 624462963 725 True 1269.000000 1269 98.209000 2944 3669 1 chr2A.!!$R1 725
10 TraesCS5A01G202900 chr1D 223523842 223524567 725 False 1269.000000 1269 98.209000 2944 3669 1 chr1D.!!$F4 725
11 TraesCS5A01G202900 chr7D 465339834 465340579 745 False 1264.000000 1264 97.323000 2944 3686 1 chr7D.!!$F2 742
12 TraesCS5A01G202900 chr7D 409302476 409302991 515 True 702.000000 702 91.506000 239 747 1 chr7D.!!$R3 508
13 TraesCS5A01G202900 chr7A 232384019 232384750 731 True 1264.000000 1264 97.817000 2944 3676 1 chr7A.!!$R1 732
14 TraesCS5A01G202900 chr3D 422742414 422743139 725 False 1264.000000 1264 98.072000 2944 3669 1 chr3D.!!$F1 725
15 TraesCS5A01G202900 chr3D 446916934 446917446 512 False 691.000000 691 91.262000 239 744 1 chr3D.!!$F2 505
16 TraesCS5A01G202900 chr3D 368008556 368009070 514 True 664.000000 664 90.135000 239 747 1 chr3D.!!$R2 508
17 TraesCS5A01G202900 chr1A 292062400 292063138 738 False 1253.000000 1253 97.174000 2944 3686 1 chr1A.!!$F2 742
18 TraesCS5A01G202900 chr1B 643459067 643459582 515 True 708.000000 708 91.699000 239 747 1 chr1B.!!$R2 508
19 TraesCS5A01G202900 chr7B 144818590 144819105 515 False 691.000000 691 90.944000 234 747 1 chr7B.!!$F2 513
20 TraesCS5A01G202900 chr4A 440948797 440949310 513 False 678.000000 678 90.734000 239 747 1 chr4A.!!$F2 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 419 0.972983 TGCACTGACCTAGAGCTCCC 60.973 60.000 10.93 0.00 42.63 4.30 F
1649 1929 1.152652 TTGGGTGCCATCCGTTGTT 60.153 52.632 0.00 0.00 31.53 2.83 F
1905 2227 0.694444 GGGGAAGCATACTGGGGAGA 60.694 60.000 0.00 0.00 0.00 3.71 F
3219 3635 0.034756 TGTATGGCGCTGAGTGTTGT 59.965 50.000 7.64 0.00 0.00 3.32 F
3309 3725 1.202582 CACACGAGGAAGGATCGAGTT 59.797 52.381 1.94 0.00 41.07 3.01 F
4482 4962 0.392998 GACATGGCGGAAGTGATGGT 60.393 55.000 0.00 0.00 0.00 3.55 F
5162 5650 0.529992 CGACACCGGGGAGATTTAGC 60.530 60.000 12.96 0.00 0.00 3.09 F
5590 6246 0.618458 ACCAGGCCGTGAATACATGT 59.382 50.000 2.69 2.69 0.00 3.21 F
5811 6467 2.599408 TTTGAGACGGAGGGAGTAGT 57.401 50.000 0.00 0.00 0.00 2.73 F
6114 6777 2.672961 CACCAATCTTCTCGGTGCTA 57.327 50.000 0.00 0.00 43.43 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1834 2136 0.759346 ACACTGGTCCCTGAACACTC 59.241 55.000 0.00 0.00 0.00 3.51 R
2859 3191 0.249398 TTTAACGAGCTGCTCCCTCC 59.751 55.000 22.97 0.00 0.00 4.30 R
3434 3850 0.391130 ATTCTCCGCACGCTTTAGCA 60.391 50.000 2.29 0.00 42.21 3.49 R
4482 4962 2.223226 CGATGAAACATAACCATGCGCA 60.223 45.455 14.96 14.96 35.39 6.09 R
4977 5463 2.551032 ACCTTCGGTTAAAAGAAAGGCG 59.449 45.455 0.00 0.00 27.29 5.52 R
5388 5877 0.108281 GCAAGTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62 R
5976 6637 1.398390 GAAACGACTGCATCCCATGTC 59.602 52.381 0.00 0.00 0.00 3.06 R
7033 7710 4.880759 TGAAATGTTGCCTGGTTGTAATG 58.119 39.130 0.00 0.00 0.00 1.90 R
7612 8292 3.925688 AATTATAGCGCAGTTGACACG 57.074 42.857 11.47 0.00 0.00 4.49 R
7884 8565 0.171903 AAGGAAACGATGCATGCTGC 59.828 50.000 20.33 9.71 45.29 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.855904 GCTTTACTCTCAAATGAACTTTTCGAA 59.144 33.333 0.00 0.00 0.00 3.71
29 30 5.738370 ACTCTCAAATGAACTTTTCGAACG 58.262 37.500 0.00 0.00 0.00 3.95
33 34 4.573201 TCAAATGAACTTTTCGAACGGTCT 59.427 37.500 11.61 0.80 0.00 3.85
45 46 4.436998 CGGTCTCTGCACCCGGTC 62.437 72.222 0.00 0.00 38.09 4.79
79 94 2.813908 CACCGCCCTACACGCTTC 60.814 66.667 0.00 0.00 0.00 3.86
131 146 3.066190 CCACGTCCGAGCTACCCA 61.066 66.667 0.00 0.00 0.00 4.51
132 147 2.181021 CACGTCCGAGCTACCCAC 59.819 66.667 0.00 0.00 0.00 4.61
143 158 5.129815 TCCGAGCTACCCACACTATTTTATT 59.870 40.000 0.00 0.00 0.00 1.40
145 160 5.277345 CGAGCTACCCACACTATTTTATTGC 60.277 44.000 0.00 0.00 0.00 3.56
147 162 5.357032 AGCTACCCACACTATTTTATTGCAC 59.643 40.000 0.00 0.00 0.00 4.57
148 163 5.357032 GCTACCCACACTATTTTATTGCACT 59.643 40.000 0.00 0.00 0.00 4.40
149 164 5.643379 ACCCACACTATTTTATTGCACTG 57.357 39.130 0.00 0.00 0.00 3.66
151 166 5.183140 ACCCACACTATTTTATTGCACTGAC 59.817 40.000 0.00 0.00 0.00 3.51
152 167 5.393027 CCCACACTATTTTATTGCACTGACC 60.393 44.000 0.00 0.00 0.00 4.02
153 168 5.415701 CCACACTATTTTATTGCACTGACCT 59.584 40.000 0.00 0.00 0.00 3.85
155 170 7.201644 CCACACTATTTTATTGCACTGACCTAG 60.202 40.741 0.00 0.00 0.00 3.02
156 171 7.549134 CACACTATTTTATTGCACTGACCTAGA 59.451 37.037 0.00 0.00 0.00 2.43
157 172 7.766278 ACACTATTTTATTGCACTGACCTAGAG 59.234 37.037 0.00 0.00 0.00 2.43
162 419 0.972983 TGCACTGACCTAGAGCTCCC 60.973 60.000 10.93 0.00 42.63 4.30
365 622 2.488355 CTCGGCTCGGCTCGTTTA 59.512 61.111 0.00 0.00 0.00 2.01
410 667 2.442188 CGGGCGCTCGTTAACAGAC 61.442 63.158 24.35 0.00 0.00 3.51
574 834 8.841444 AATTGTCACGTAAGATGAAAATATGC 57.159 30.769 0.00 0.00 33.66 3.14
581 841 5.169561 CGTAAGATGAAAATATGCGTTGTGC 59.830 40.000 0.00 0.00 43.04 4.57
652 917 6.417191 TCGTTAAGCTCGCTAAAATCAATT 57.583 33.333 0.00 0.00 0.00 2.32
674 939 9.859427 CAATTATTGGCTCTGTTCATTAAGAAA 57.141 29.630 0.00 0.00 38.13 2.52
709 974 2.005971 ACGAACCGAACTATCAAGCC 57.994 50.000 0.00 0.00 0.00 4.35
748 1014 4.056125 GGCTTTTGGTCCAGCCGC 62.056 66.667 4.94 2.83 46.19 6.53
749 1015 4.404654 GCTTTTGGTCCAGCCGCG 62.405 66.667 0.00 0.00 41.21 6.46
854 1120 2.246874 AAGGAGAGACCGAGGGGGA 61.247 63.158 0.00 0.00 44.74 4.81
1464 1730 1.755380 GTAGTAGCACCGATTCACCCT 59.245 52.381 0.00 0.00 0.00 4.34
1522 1788 3.075998 CATCACGCGTGTCTGCTC 58.924 61.111 35.74 0.00 0.00 4.26
1619 1885 3.317149 GGTACCATCGAGTAGTGCATACA 59.683 47.826 7.15 0.00 36.79 2.29
1649 1929 1.152652 TTGGGTGCCATCCGTTGTT 60.153 52.632 0.00 0.00 31.53 2.83
1834 2136 4.122776 CAAGGGACTAATCATTCTGTCGG 58.877 47.826 0.00 0.00 38.49 4.79
1866 2188 2.341846 CCAGTGTGGTTACTTGTGGT 57.658 50.000 0.00 0.00 31.35 4.16
1897 2219 1.873591 CATTAGCACGGGGAAGCATAC 59.126 52.381 0.00 0.00 0.00 2.39
1905 2227 0.694444 GGGGAAGCATACTGGGGAGA 60.694 60.000 0.00 0.00 0.00 3.71
1963 2285 1.228228 GATTCATGGAGCTGGGGCA 59.772 57.895 0.00 0.00 41.70 5.36
1975 2297 2.581216 CTGGGGCAGCAGATATTCAT 57.419 50.000 0.00 0.00 0.00 2.57
2034 2356 6.918067 TTCTCAGAAGTATGAAGACAGGAA 57.082 37.500 0.00 0.00 0.00 3.36
2054 2380 9.860898 ACAGGAAAAATTGTTAATAATCTCAGC 57.139 29.630 0.00 0.00 0.00 4.26
2076 2402 4.687219 GCCATAAATTGGGCTCTGTCTAGT 60.687 45.833 8.39 0.00 46.55 2.57
2344 2670 6.602009 ACTTAAAAGTGAAGTTAGCAACCTGT 59.398 34.615 0.00 0.00 37.98 4.00
2346 2672 6.373186 AAAAGTGAAGTTAGCAACCTGTAC 57.627 37.500 0.00 0.00 0.00 2.90
2347 2673 4.682778 AGTGAAGTTAGCAACCTGTACA 57.317 40.909 0.00 0.00 0.00 2.90
2369 2695 8.979574 GTACATAGCTATAATGACTGACAAACC 58.020 37.037 5.77 0.00 0.00 3.27
2378 2704 3.691575 TGACTGACAAACCCACAAAAGA 58.308 40.909 0.00 0.00 0.00 2.52
2389 2715 3.263170 ACCCACAAAAGAAGTTTTTGGCT 59.737 39.130 14.60 0.00 42.09 4.75
2470 2796 5.627182 ATGACAGAGTGGAAGCATATTCT 57.373 39.130 0.00 0.00 0.00 2.40
2495 2823 9.535878 CTATCTAGGAAAAGACTGTTATGGTTC 57.464 37.037 0.00 0.00 0.00 3.62
2518 2846 1.870055 CTTGGCGGCAACTTGCTCAT 61.870 55.000 21.79 0.00 44.28 2.90
2564 2892 2.042162 AGTACTTGGGTAGGGAACTCGA 59.958 50.000 0.00 0.00 43.67 4.04
2570 2898 1.878734 GGGTAGGGAACTCGAGATACG 59.121 57.143 21.68 0.00 43.67 3.06
2574 2902 4.024472 GGTAGGGAACTCGAGATACGTTAC 60.024 50.000 21.68 13.52 43.67 2.50
2586 2914 9.874215 CTCGAGATACGTTACTGAAAATGTATA 57.126 33.333 6.58 0.03 40.16 1.47
2644 2972 8.508875 TCCGTTCCAAAATAATTGAAGTTCTAC 58.491 33.333 4.17 0.00 0.00 2.59
2645 2973 8.293867 CCGTTCCAAAATAATTGAAGTTCTACA 58.706 33.333 4.17 0.00 0.00 2.74
2720 3048 8.085909 TCCGCAAAGATCTACGATATCAAATAA 58.914 33.333 12.74 0.00 0.00 1.40
2843 3175 6.187727 TGACTTAGGACAATTCCAGAACTT 57.812 37.500 0.00 0.00 45.72 2.66
2844 3176 6.601332 TGACTTAGGACAATTCCAGAACTTT 58.399 36.000 0.00 0.00 45.72 2.66
2845 3177 6.486657 TGACTTAGGACAATTCCAGAACTTTG 59.513 38.462 0.00 0.00 45.72 2.77
2859 3191 9.709495 TTCCAGAACTTTGATTATTTTGGAATG 57.291 29.630 4.57 0.00 37.29 2.67
2872 3204 1.148048 GGAATGGAGGGAGCAGCTC 59.852 63.158 14.69 14.69 0.00 4.09
2875 3207 1.557269 AATGGAGGGAGCAGCTCGTT 61.557 55.000 16.47 6.66 0.00 3.85
3032 3448 1.766496 TCAGAAGGACACCTTTCGGTT 59.234 47.619 4.51 0.00 44.82 4.44
3219 3635 0.034756 TGTATGGCGCTGAGTGTTGT 59.965 50.000 7.64 0.00 0.00 3.32
3309 3725 1.202582 CACACGAGGAAGGATCGAGTT 59.797 52.381 1.94 0.00 41.07 3.01
3467 3883 1.836802 GGAGAATGTCAAGAGAGGGCT 59.163 52.381 0.00 0.00 0.00 5.19
3622 4038 4.122776 CGAGATCTTATGGGTTTCACCTG 58.877 47.826 0.00 0.00 38.64 4.00
3669 4085 4.021016 ACCAAAGGCTTTGTTGTTGTTGTA 60.021 37.500 31.68 0.00 38.98 2.41
3670 4086 5.115480 CCAAAGGCTTTGTTGTTGTTGTAT 58.885 37.500 31.68 0.00 38.98 2.29
3671 4087 5.006552 CCAAAGGCTTTGTTGTTGTTGTATG 59.993 40.000 31.68 12.84 38.98 2.39
3672 4088 3.716601 AGGCTTTGTTGTTGTTGTATGC 58.283 40.909 0.00 0.00 0.00 3.14
3673 4089 3.384467 AGGCTTTGTTGTTGTTGTATGCT 59.616 39.130 0.00 0.00 0.00 3.79
3674 4090 4.582656 AGGCTTTGTTGTTGTTGTATGCTA 59.417 37.500 0.00 0.00 0.00 3.49
3675 4091 5.243730 AGGCTTTGTTGTTGTTGTATGCTAT 59.756 36.000 0.00 0.00 0.00 2.97
3676 4092 5.925969 GGCTTTGTTGTTGTTGTATGCTATT 59.074 36.000 0.00 0.00 0.00 1.73
3677 4093 6.128849 GGCTTTGTTGTTGTTGTATGCTATTG 60.129 38.462 0.00 0.00 0.00 1.90
3678 4094 6.640499 GCTTTGTTGTTGTTGTATGCTATTGA 59.360 34.615 0.00 0.00 0.00 2.57
3745 4181 8.084684 GCTAACTGTCACTGTATCATCATATGA 58.915 37.037 8.10 8.10 44.55 2.15
3748 4184 6.267242 ACTGTCACTGTATCATCATATGAGCT 59.733 38.462 11.78 0.00 43.53 4.09
3750 4186 5.868258 GTCACTGTATCATCATATGAGCTGG 59.132 44.000 11.78 1.27 43.53 4.85
3751 4187 5.776716 TCACTGTATCATCATATGAGCTGGA 59.223 40.000 11.78 6.59 43.53 3.86
3767 4203 4.599047 GCTGGATGCTACTTGATCTACT 57.401 45.455 0.00 0.00 38.95 2.57
3772 4208 5.163269 TGGATGCTACTTGATCTACTGCATT 60.163 40.000 12.32 0.00 39.36 3.56
3773 4209 5.762218 GGATGCTACTTGATCTACTGCATTT 59.238 40.000 12.32 0.00 39.36 2.32
3777 4213 7.555965 TGCTACTTGATCTACTGCATTTTCTA 58.444 34.615 0.00 0.00 0.00 2.10
3816 4252 8.763049 TGTAGACACTTATCTTGACATCTTTG 57.237 34.615 0.00 0.00 0.00 2.77
3817 4253 8.367911 TGTAGACACTTATCTTGACATCTTTGT 58.632 33.333 0.00 0.00 39.32 2.83
3862 4298 3.402110 TGTTGTTCTGCTACATGGTCTG 58.598 45.455 0.00 0.00 0.00 3.51
4011 4447 5.585047 AGGTCTTAAAGTTTATGCGATGGAC 59.415 40.000 0.00 0.00 0.00 4.02
4050 4486 6.519382 AGTTACCGTAATATACTGGGCTTTC 58.481 40.000 0.00 0.00 0.00 2.62
4056 4492 5.452776 CGTAATATACTGGGCTTTCACCTGA 60.453 44.000 0.00 0.00 0.00 3.86
4130 4566 9.449719 CAACTATAAAGTTCACCTGAGGTTTAT 57.550 33.333 0.00 6.08 44.28 1.40
4297 4733 6.655848 TGCGGTTATTCAGTATAAACAACCTT 59.344 34.615 0.00 0.00 36.39 3.50
4372 4849 1.884235 CTGCTTTCGTCCTGGAAGTT 58.116 50.000 9.46 0.00 0.00 2.66
4412 4892 5.458451 TCTCAGTCCTCCTTCTCTTCATA 57.542 43.478 0.00 0.00 0.00 2.15
4482 4962 0.392998 GACATGGCGGAAGTGATGGT 60.393 55.000 0.00 0.00 0.00 3.55
4540 5020 6.829298 TGTTGGTGACTTGGTAATGTTTCTTA 59.171 34.615 0.00 0.00 0.00 2.10
4585 5065 8.348285 AGATATGGAGTTCTAGTCATAGCTTC 57.652 38.462 0.00 0.00 35.98 3.86
4649 5129 6.963805 CGCAGAAAGAATTTTTAGAGGATGTC 59.036 38.462 0.00 0.00 39.27 3.06
4652 5132 8.171840 CAGAAAGAATTTTTAGAGGATGTCGTC 58.828 37.037 0.00 0.00 39.27 4.20
4670 5150 5.867716 TGTCGTCTTAGAAGAAAACTATGGC 59.132 40.000 0.00 0.00 36.68 4.40
4853 5339 3.338249 TGATTCAAAGGCAGCACTAGAC 58.662 45.455 0.00 0.00 0.00 2.59
4947 5433 7.471721 TCCGATTATCAAAGTAAGCACATTTG 58.528 34.615 0.00 0.00 35.68 2.32
4951 5437 9.624697 GATTATCAAAGTAAGCACATTTGAACA 57.375 29.630 9.46 2.42 43.81 3.18
4977 5463 4.154375 GCCTTTCTTTCTAGTGGTTACTGC 59.846 45.833 0.00 0.00 37.78 4.40
4979 5465 2.955614 TCTTTCTAGTGGTTACTGCGC 58.044 47.619 0.00 0.00 37.78 6.09
4980 5466 2.000447 CTTTCTAGTGGTTACTGCGCC 59.000 52.381 4.18 0.00 37.78 6.53
5029 5517 2.667418 CTCTGTGGCTGGGGTCTG 59.333 66.667 0.00 0.00 0.00 3.51
5030 5518 2.122413 TCTGTGGCTGGGGTCTGT 60.122 61.111 0.00 0.00 0.00 3.41
5046 5534 5.354234 GGGGTCTGTGTTATATGAACAACAG 59.646 44.000 13.03 13.03 35.43 3.16
5093 5581 3.898123 GCACTCCTGGAATACTATCCTCA 59.102 47.826 0.00 0.00 40.35 3.86
5116 5604 8.735692 TCATATGCTTGATGTTACTTGAATGA 57.264 30.769 0.00 0.00 0.00 2.57
5162 5650 0.529992 CGACACCGGGGAGATTTAGC 60.530 60.000 12.96 0.00 0.00 3.09
5230 5719 6.125719 TGGTATGCTGTGCTAAAATCCATTA 58.874 36.000 0.00 0.00 0.00 1.90
5242 5731 7.719633 TGCTAAAATCCATTATCCCTGTTACTC 59.280 37.037 0.00 0.00 0.00 2.59
5243 5732 7.175119 GCTAAAATCCATTATCCCTGTTACTCC 59.825 40.741 0.00 0.00 0.00 3.85
5244 5733 5.584551 AATCCATTATCCCTGTTACTCCC 57.415 43.478 0.00 0.00 0.00 4.30
5245 5734 4.295905 TCCATTATCCCTGTTACTCCCT 57.704 45.455 0.00 0.00 0.00 4.20
5246 5735 5.427857 TCCATTATCCCTGTTACTCCCTA 57.572 43.478 0.00 0.00 0.00 3.53
5247 5736 5.152934 TCCATTATCCCTGTTACTCCCTAC 58.847 45.833 0.00 0.00 0.00 3.18
5248 5737 5.102783 TCCATTATCCCTGTTACTCCCTACT 60.103 44.000 0.00 0.00 0.00 2.57
5249 5738 5.607171 CCATTATCCCTGTTACTCCCTACTT 59.393 44.000 0.00 0.00 0.00 2.24
5250 5739 6.101296 CCATTATCCCTGTTACTCCCTACTTT 59.899 42.308 0.00 0.00 0.00 2.66
5251 5740 6.803366 TTATCCCTGTTACTCCCTACTTTC 57.197 41.667 0.00 0.00 0.00 2.62
5252 5741 3.447950 TCCCTGTTACTCCCTACTTTCC 58.552 50.000 0.00 0.00 0.00 3.13
5253 5742 3.078612 TCCCTGTTACTCCCTACTTTCCT 59.921 47.826 0.00 0.00 0.00 3.36
5254 5743 4.295775 TCCCTGTTACTCCCTACTTTCCTA 59.704 45.833 0.00 0.00 0.00 2.94
5255 5744 5.028131 CCCTGTTACTCCCTACTTTCCTAA 58.972 45.833 0.00 0.00 0.00 2.69
5256 5745 5.666265 CCCTGTTACTCCCTACTTTCCTAAT 59.334 44.000 0.00 0.00 0.00 1.73
5257 5746 6.158169 CCCTGTTACTCCCTACTTTCCTAATT 59.842 42.308 0.00 0.00 0.00 1.40
5258 5747 7.346436 CCCTGTTACTCCCTACTTTCCTAATTA 59.654 40.741 0.00 0.00 0.00 1.40
5259 5748 8.935741 CCTGTTACTCCCTACTTTCCTAATTAT 58.064 37.037 0.00 0.00 0.00 1.28
5265 5754 9.059023 ACTCCCTACTTTCCTAATTATTTGTCT 57.941 33.333 0.00 0.00 0.00 3.41
5266 5755 9.907229 CTCCCTACTTTCCTAATTATTTGTCTT 57.093 33.333 0.00 0.00 0.00 3.01
5285 5774 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
5286 5775 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
5287 5776 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
5288 5777 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
5289 5778 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
5290 5779 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
5291 5780 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
5292 5781 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
5293 5782 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
5295 5784 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
5296 5785 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
5297 5786 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
5298 5787 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
5299 5788 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
5300 5789 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
5301 5790 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
5302 5791 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
5303 5792 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
5304 5793 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
5305 5794 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
5306 5795 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
5307 5796 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
5308 5797 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
5309 5798 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
5310 5799 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
5311 5800 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
5312 5801 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
5313 5802 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
5314 5803 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
5315 5804 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
5316 5805 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
5317 5806 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
5318 5807 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
5319 5808 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
5352 5841 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
5354 5843 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
5355 5844 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
5356 5845 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
5357 5846 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
5358 5847 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
5359 5848 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
5360 5849 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
5361 5850 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
5362 5851 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
5363 5852 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
5364 5853 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
5365 5854 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
5366 5855 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
5367 5856 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
5368 5857 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
5369 5858 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
5370 5859 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
5371 5860 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
5372 5861 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
5373 5862 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
5374 5863 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
5375 5864 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
5398 5887 8.919777 AAAGATAAATATTTAGGAACGGAGGG 57.080 34.615 13.15 0.00 0.00 4.30
5399 5888 7.867160 AGATAAATATTTAGGAACGGAGGGA 57.133 36.000 13.15 0.00 0.00 4.20
5400 5889 7.908453 AGATAAATATTTAGGAACGGAGGGAG 58.092 38.462 13.15 0.00 0.00 4.30
5513 6002 8.379428 AGGAAGGTGCATTTTATTATTCCTTT 57.621 30.769 0.00 0.00 41.89 3.11
5577 6233 1.302832 CCTTCTGTGTGGACCAGGC 60.303 63.158 0.00 0.00 0.00 4.85
5590 6246 0.618458 ACCAGGCCGTGAATACATGT 59.382 50.000 2.69 2.69 0.00 3.21
5625 6281 9.523168 TTTAACTTGTAAGGGTTGCAATATACT 57.477 29.630 0.59 0.00 34.77 2.12
5626 6282 7.625828 AACTTGTAAGGGTTGCAATATACTC 57.374 36.000 0.59 0.00 34.77 2.59
5627 6283 6.120220 ACTTGTAAGGGTTGCAATATACTCC 58.880 40.000 0.59 0.00 34.77 3.85
5628 6284 5.043737 TGTAAGGGTTGCAATATACTCCC 57.956 43.478 11.68 11.68 35.56 4.30
5629 6285 4.724798 TGTAAGGGTTGCAATATACTCCCT 59.275 41.667 15.53 15.53 45.96 4.20
5630 6286 4.439253 AAGGGTTGCAATATACTCCCTC 57.561 45.455 20.14 0.00 43.62 4.30
5631 6287 3.669949 AGGGTTGCAATATACTCCCTCT 58.330 45.455 15.53 0.00 40.96 3.69
5632 6288 3.392616 AGGGTTGCAATATACTCCCTCTG 59.607 47.826 15.53 0.00 40.96 3.35
5633 6289 3.136626 GGGTTGCAATATACTCCCTCTGT 59.863 47.826 12.22 0.00 32.89 3.41
5634 6290 4.381411 GGTTGCAATATACTCCCTCTGTC 58.619 47.826 0.59 0.00 0.00 3.51
5635 6291 4.381411 GTTGCAATATACTCCCTCTGTCC 58.619 47.826 0.59 0.00 0.00 4.02
5636 6292 2.972713 TGCAATATACTCCCTCTGTCCC 59.027 50.000 0.00 0.00 0.00 4.46
5637 6293 2.972713 GCAATATACTCCCTCTGTCCCA 59.027 50.000 0.00 0.00 0.00 4.37
5638 6294 3.391296 GCAATATACTCCCTCTGTCCCAA 59.609 47.826 0.00 0.00 0.00 4.12
5639 6295 4.141482 GCAATATACTCCCTCTGTCCCAAA 60.141 45.833 0.00 0.00 0.00 3.28
5640 6296 5.631481 GCAATATACTCCCTCTGTCCCAAAA 60.631 44.000 0.00 0.00 0.00 2.44
5641 6297 6.605119 CAATATACTCCCTCTGTCCCAAAAT 58.395 40.000 0.00 0.00 0.00 1.82
5642 6298 7.691791 GCAATATACTCCCTCTGTCCCAAAATA 60.692 40.741 0.00 0.00 0.00 1.40
5643 6299 7.947782 ATATACTCCCTCTGTCCCAAAATAA 57.052 36.000 0.00 0.00 0.00 1.40
5644 6300 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
5645 6301 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
5646 6302 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
5647 6303 3.655777 TCCCTCTGTCCCAAAATAAGTGT 59.344 43.478 0.00 0.00 0.00 3.55
5648 6304 4.105697 TCCCTCTGTCCCAAAATAAGTGTT 59.894 41.667 0.00 0.00 0.00 3.32
5649 6305 4.218417 CCCTCTGTCCCAAAATAAGTGTTG 59.782 45.833 0.00 0.00 0.00 3.33
5650 6306 4.321230 CCTCTGTCCCAAAATAAGTGTTGC 60.321 45.833 0.00 0.00 0.00 4.17
5651 6307 4.469657 TCTGTCCCAAAATAAGTGTTGCT 58.530 39.130 0.00 0.00 0.00 3.91
5652 6308 4.278170 TCTGTCCCAAAATAAGTGTTGCTG 59.722 41.667 0.00 0.00 0.00 4.41
5653 6309 4.211125 TGTCCCAAAATAAGTGTTGCTGA 58.789 39.130 0.00 0.00 0.00 4.26
5654 6310 4.832266 TGTCCCAAAATAAGTGTTGCTGAT 59.168 37.500 0.00 0.00 0.00 2.90
5655 6311 5.304101 TGTCCCAAAATAAGTGTTGCTGATT 59.696 36.000 0.00 0.00 29.37 2.57
5656 6312 6.183360 TGTCCCAAAATAAGTGTTGCTGATTT 60.183 34.615 0.00 0.00 39.41 2.17
5657 6313 7.014711 TGTCCCAAAATAAGTGTTGCTGATTTA 59.985 33.333 0.00 0.00 37.29 1.40
5658 6314 7.542130 GTCCCAAAATAAGTGTTGCTGATTTAG 59.458 37.037 0.00 0.00 37.29 1.85
5659 6315 7.232534 TCCCAAAATAAGTGTTGCTGATTTAGT 59.767 33.333 0.00 0.00 37.29 2.24
5660 6316 8.519526 CCCAAAATAAGTGTTGCTGATTTAGTA 58.480 33.333 0.00 0.00 37.29 1.82
5661 6317 9.341899 CCAAAATAAGTGTTGCTGATTTAGTAC 57.658 33.333 0.00 0.00 37.29 2.73
5662 6318 9.891828 CAAAATAAGTGTTGCTGATTTAGTACA 57.108 29.630 0.00 0.00 37.29 2.90
5664 6320 9.893305 AAATAAGTGTTGCTGATTTAGTACAAC 57.107 29.630 0.00 0.00 36.68 3.32
5665 6321 8.848474 ATAAGTGTTGCTGATTTAGTACAACT 57.152 30.769 0.00 0.00 40.88 3.16
5666 6322 7.568199 AAGTGTTGCTGATTTAGTACAACTT 57.432 32.000 0.00 0.00 40.88 2.66
5667 6323 7.568199 AGTGTTGCTGATTTAGTACAACTTT 57.432 32.000 0.00 0.00 40.88 2.66
5668 6324 7.417612 AGTGTTGCTGATTTAGTACAACTTTG 58.582 34.615 0.00 0.00 40.88 2.77
5669 6325 7.067008 AGTGTTGCTGATTTAGTACAACTTTGT 59.933 33.333 0.00 0.00 44.86 2.83
5670 6326 8.339714 GTGTTGCTGATTTAGTACAACTTTGTA 58.660 33.333 0.00 0.00 42.35 2.41
5682 6338 5.881923 ACAACTTTGTACTCCCTCTGTAA 57.118 39.130 0.00 0.00 40.16 2.41
5683 6339 6.243216 ACAACTTTGTACTCCCTCTGTAAA 57.757 37.500 0.00 0.00 40.16 2.01
5684 6340 6.289064 ACAACTTTGTACTCCCTCTGTAAAG 58.711 40.000 0.00 0.00 40.16 1.85
5685 6341 6.099269 ACAACTTTGTACTCCCTCTGTAAAGA 59.901 38.462 0.00 0.00 40.16 2.52
5686 6342 6.742559 ACTTTGTACTCCCTCTGTAAAGAA 57.257 37.500 0.00 0.00 0.00 2.52
5687 6343 7.133133 ACTTTGTACTCCCTCTGTAAAGAAA 57.867 36.000 0.00 0.00 0.00 2.52
5688 6344 7.746703 ACTTTGTACTCCCTCTGTAAAGAAAT 58.253 34.615 0.00 0.00 0.00 2.17
5689 6345 8.877195 ACTTTGTACTCCCTCTGTAAAGAAATA 58.123 33.333 0.00 0.00 0.00 1.40
5690 6346 9.152595 CTTTGTACTCCCTCTGTAAAGAAATAC 57.847 37.037 0.00 0.00 0.00 1.89
5691 6347 7.786046 TGTACTCCCTCTGTAAAGAAATACA 57.214 36.000 0.00 0.00 34.72 2.29
5692 6348 8.197592 TGTACTCCCTCTGTAAAGAAATACAA 57.802 34.615 0.00 0.00 35.48 2.41
5693 6349 8.311836 TGTACTCCCTCTGTAAAGAAATACAAG 58.688 37.037 0.00 0.00 35.48 3.16
5694 6350 7.554959 ACTCCCTCTGTAAAGAAATACAAGA 57.445 36.000 0.00 0.00 35.48 3.02
5695 6351 7.616313 ACTCCCTCTGTAAAGAAATACAAGAG 58.384 38.462 0.00 0.00 35.48 2.85
5696 6352 6.407202 TCCCTCTGTAAAGAAATACAAGAGC 58.593 40.000 0.00 0.00 35.48 4.09
5697 6353 5.292101 CCCTCTGTAAAGAAATACAAGAGCG 59.708 44.000 0.00 0.00 35.48 5.03
5698 6354 5.869888 CCTCTGTAAAGAAATACAAGAGCGT 59.130 40.000 0.00 0.00 35.48 5.07
5699 6355 6.369065 CCTCTGTAAAGAAATACAAGAGCGTT 59.631 38.462 0.00 0.00 35.48 4.84
5700 6356 7.095187 CCTCTGTAAAGAAATACAAGAGCGTTT 60.095 37.037 0.00 0.00 35.48 3.60
5701 6357 8.821147 TCTGTAAAGAAATACAAGAGCGTTTA 57.179 30.769 0.00 0.00 35.48 2.01
5702 6358 8.922676 TCTGTAAAGAAATACAAGAGCGTTTAG 58.077 33.333 0.00 0.00 35.48 1.85
5703 6359 8.821147 TGTAAAGAAATACAAGAGCGTTTAGA 57.179 30.769 0.00 0.00 33.02 2.10
5704 6360 9.431887 TGTAAAGAAATACAAGAGCGTTTAGAT 57.568 29.630 0.00 0.00 33.02 1.98
5705 6361 9.903185 GTAAAGAAATACAAGAGCGTTTAGATC 57.097 33.333 0.00 0.00 35.01 2.75
5706 6362 8.547967 AAAGAAATACAAGAGCGTTTAGATCA 57.452 30.769 0.00 0.00 37.82 2.92
5707 6363 7.527084 AGAAATACAAGAGCGTTTAGATCAC 57.473 36.000 0.00 0.00 37.82 3.06
5708 6364 7.324178 AGAAATACAAGAGCGTTTAGATCACT 58.676 34.615 0.00 0.00 37.82 3.41
5709 6365 8.467598 AGAAATACAAGAGCGTTTAGATCACTA 58.532 33.333 0.00 0.00 37.82 2.74
5710 6366 8.635877 AAATACAAGAGCGTTTAGATCACTAG 57.364 34.615 0.00 0.00 37.82 2.57
5711 6367 5.899120 ACAAGAGCGTTTAGATCACTAGA 57.101 39.130 0.00 0.00 37.82 2.43
5712 6368 6.458232 ACAAGAGCGTTTAGATCACTAGAT 57.542 37.500 0.00 0.00 37.82 1.98
5738 6394 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
5739 6395 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
5740 6396 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
5741 6397 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
5756 6412 9.654663 AAACGCTCTTATATTTCTTTACTGAGT 57.345 29.630 0.00 0.00 0.00 3.41
5757 6413 8.635877 ACGCTCTTATATTTCTTTACTGAGTG 57.364 34.615 0.00 0.00 36.15 3.51
5758 6414 8.467598 ACGCTCTTATATTTCTTTACTGAGTGA 58.532 33.333 0.00 0.00 34.75 3.41
5759 6415 8.963130 CGCTCTTATATTTCTTTACTGAGTGAG 58.037 37.037 0.00 0.00 33.12 3.51
5760 6416 9.810545 GCTCTTATATTTCTTTACTGAGTGAGT 57.189 33.333 0.00 0.00 38.88 3.41
5770 6426 9.745880 TTCTTTACTGAGTGAGTACTAAAGTTG 57.254 33.333 0.00 0.00 36.86 3.16
5771 6427 8.910944 TCTTTACTGAGTGAGTACTAAAGTTGT 58.089 33.333 0.00 0.00 36.86 3.32
5773 6429 9.956720 TTTACTGAGTGAGTACTAAAGTTGTAC 57.043 33.333 0.00 0.00 36.86 2.90
5783 6439 7.695820 AGTACTAAAGTTGTACTAGATGAGCG 58.304 38.462 0.00 0.00 45.86 5.03
5784 6440 6.754702 ACTAAAGTTGTACTAGATGAGCGA 57.245 37.500 0.00 0.00 0.00 4.93
5785 6441 6.553524 ACTAAAGTTGTACTAGATGAGCGAC 58.446 40.000 0.00 0.00 0.00 5.19
5786 6442 5.386958 AAAGTTGTACTAGATGAGCGACA 57.613 39.130 0.00 0.00 0.00 4.35
5787 6443 4.624336 AGTTGTACTAGATGAGCGACAG 57.376 45.455 0.00 0.00 0.00 3.51
5788 6444 4.011023 AGTTGTACTAGATGAGCGACAGT 58.989 43.478 0.00 0.00 0.00 3.55
5789 6445 4.459685 AGTTGTACTAGATGAGCGACAGTT 59.540 41.667 0.00 0.00 0.00 3.16
5790 6446 5.646793 AGTTGTACTAGATGAGCGACAGTTA 59.353 40.000 0.00 0.00 0.00 2.24
5791 6447 6.319152 AGTTGTACTAGATGAGCGACAGTTAT 59.681 38.462 0.00 0.00 0.00 1.89
5792 6448 6.694877 TGTACTAGATGAGCGACAGTTATT 57.305 37.500 0.00 0.00 0.00 1.40
5793 6449 7.096884 TGTACTAGATGAGCGACAGTTATTT 57.903 36.000 0.00 0.00 0.00 1.40
5794 6450 7.544622 TGTACTAGATGAGCGACAGTTATTTT 58.455 34.615 0.00 0.00 0.00 1.82
5795 6451 6.893958 ACTAGATGAGCGACAGTTATTTTG 57.106 37.500 0.00 0.00 0.00 2.44
5796 6452 6.631016 ACTAGATGAGCGACAGTTATTTTGA 58.369 36.000 0.00 0.00 0.00 2.69
5797 6453 6.754209 ACTAGATGAGCGACAGTTATTTTGAG 59.246 38.462 0.00 0.00 0.00 3.02
5798 6454 5.724328 AGATGAGCGACAGTTATTTTGAGA 58.276 37.500 0.00 0.00 0.00 3.27
5799 6455 5.578727 AGATGAGCGACAGTTATTTTGAGAC 59.421 40.000 0.00 0.00 0.00 3.36
5800 6456 3.673338 TGAGCGACAGTTATTTTGAGACG 59.327 43.478 0.00 0.00 0.00 4.18
5801 6457 2.993899 AGCGACAGTTATTTTGAGACGG 59.006 45.455 0.00 0.00 0.00 4.79
5802 6458 2.991190 GCGACAGTTATTTTGAGACGGA 59.009 45.455 0.00 0.00 0.00 4.69
5803 6459 3.060895 GCGACAGTTATTTTGAGACGGAG 59.939 47.826 0.00 0.00 0.00 4.63
5804 6460 3.612860 CGACAGTTATTTTGAGACGGAGG 59.387 47.826 0.00 0.00 0.00 4.30
5805 6461 3.933332 GACAGTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
5806 6462 3.581332 ACAGTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
5807 6463 4.184629 CAGTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
5811 6467 2.599408 TTTGAGACGGAGGGAGTAGT 57.401 50.000 0.00 0.00 0.00 2.73
5911 6570 8.801715 TTTGTTATGAAAGAATCACTGCTTTC 57.198 30.769 0.00 0.00 46.27 2.62
5931 6590 8.855110 TGCTTTCCTCAGTAATTTTGATTTGTA 58.145 29.630 0.00 0.00 0.00 2.41
5976 6637 9.329913 CAAAGAATTGACTTTAGTTGGTAATCG 57.670 33.333 0.00 0.00 38.94 3.34
6114 6777 2.672961 CACCAATCTTCTCGGTGCTA 57.327 50.000 0.00 0.00 43.43 3.49
6414 7077 9.516314 TCGATAAAGCTATATGACGGATATTTG 57.484 33.333 0.00 0.00 0.00 2.32
6477 7140 4.356405 TGACATCATCACTTGGTTGAGT 57.644 40.909 0.00 0.00 29.99 3.41
6591 7254 6.417748 ACACACGATGTTTTAGCATCTGCG 62.418 45.833 5.28 0.00 42.41 5.18
6682 7352 9.330063 CCTGAGATGTAAGTTATGCAAGAAATA 57.670 33.333 0.00 0.00 0.00 1.40
6775 7445 5.755409 TTGGATGCTCTTACTGGTTTCTA 57.245 39.130 0.00 0.00 0.00 2.10
7002 7679 3.263425 CCCCTATTACAGTCTTGTGTGGT 59.737 47.826 0.00 0.00 38.23 4.16
7022 7699 7.012610 GTGTGGTGTAAGTTACAATGGTAGTTT 59.987 37.037 17.16 0.00 40.93 2.66
7033 7710 4.275936 ACAATGGTAGTTTTGTCTGCAGAC 59.724 41.667 35.04 35.04 44.97 3.51
7063 7740 3.368323 CCAGGCAACATTTCATGGTTACC 60.368 47.826 0.00 0.00 41.41 2.85
7178 7855 5.545063 TGTTGAGTCAGACTTCAATGGTA 57.455 39.130 4.05 0.00 0.00 3.25
7916 8597 6.563939 GCATCGTTTCCTTTGAAATTTTGGTC 60.564 38.462 0.00 0.00 42.20 4.02
7922 8603 9.124807 GTTTCCTTTGAAATTTTGGTCTATACG 57.875 33.333 0.00 0.00 42.20 3.06
7932 8613 3.492421 TGGTCTATACGTCGTTTGTCC 57.508 47.619 1.78 2.58 0.00 4.02
7941 8622 3.460103 ACGTCGTTTGTCCTTGTACATT 58.540 40.909 0.00 0.00 0.00 2.71
8286 8980 9.926751 CTTGTCATCAGTTATGCTATTGTAAAG 57.073 33.333 0.00 0.00 35.38 1.85
8463 9161 3.651803 TTGGTTTGTTTTGCTATCCCG 57.348 42.857 0.00 0.00 0.00 5.14
8488 9186 4.994217 TGTGCTGAAGTTTTCGTGATATGA 59.006 37.500 0.00 0.00 0.00 2.15
8536 9234 4.855388 GCATGCAGTGAATTAACAGTTCAG 59.145 41.667 14.21 0.00 36.35 3.02
8551 9249 3.924686 CAGTTCAGAAAATGCTGCAATCC 59.075 43.478 6.36 0.00 35.86 3.01
8586 9284 6.662414 TTTGATATTTACAGAAGGCAGACG 57.338 37.500 0.00 0.00 0.00 4.18
8724 9422 7.423844 TCAGATATCTCCTTTGCTGAACTTA 57.576 36.000 1.03 0.00 30.26 2.24
8727 9425 9.421806 CAGATATCTCCTTTGCTGAACTTATAG 57.578 37.037 1.03 0.00 0.00 1.31
8729 9427 9.202273 GATATCTCCTTTGCTGAACTTATAGTG 57.798 37.037 0.00 0.00 0.00 2.74
8730 9428 5.734720 TCTCCTTTGCTGAACTTATAGTGG 58.265 41.667 0.00 0.00 0.00 4.00
8731 9429 4.843728 TCCTTTGCTGAACTTATAGTGGG 58.156 43.478 0.00 0.00 0.00 4.61
8732 9430 4.288626 TCCTTTGCTGAACTTATAGTGGGT 59.711 41.667 0.00 0.00 0.00 4.51
8733 9431 5.010282 CCTTTGCTGAACTTATAGTGGGTT 58.990 41.667 0.00 0.00 0.00 4.11
8787 9485 7.287927 TCCTACCATCGTCATAAAAGAGAAGAT 59.712 37.037 0.00 0.00 34.12 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.352739 TCGAAAAGTTCATTTGAGAGTAAAGC 58.647 34.615 0.00 0.00 0.00 3.51
2 3 9.159470 GTTCGAAAAGTTCATTTGAGAGTAAAG 57.841 33.333 0.00 0.00 0.00 1.85
3 4 7.849026 CGTTCGAAAAGTTCATTTGAGAGTAAA 59.151 33.333 0.00 0.00 0.00 2.01
6 7 5.277345 CCGTTCGAAAAGTTCATTTGAGAGT 60.277 40.000 0.00 0.00 0.00 3.24
7 8 5.140177 CCGTTCGAAAAGTTCATTTGAGAG 58.860 41.667 0.00 0.00 0.00 3.20
8 9 4.573201 ACCGTTCGAAAAGTTCATTTGAGA 59.427 37.500 0.00 0.00 0.00 3.27
9 10 4.844267 ACCGTTCGAAAAGTTCATTTGAG 58.156 39.130 0.00 0.00 0.00 3.02
10 11 4.573201 AGACCGTTCGAAAAGTTCATTTGA 59.427 37.500 0.00 0.00 0.00 2.69
11 12 4.844267 AGACCGTTCGAAAAGTTCATTTG 58.156 39.130 0.00 0.00 0.00 2.32
29 30 4.083862 GGACCGGGTGCAGAGACC 62.084 72.222 14.36 0.00 34.96 3.85
79 94 1.376466 CCAGTCCCAGTCCCAGTTG 59.624 63.158 0.00 0.00 0.00 3.16
131 146 7.620880 TCTAGGTCAGTGCAATAAAATAGTGT 58.379 34.615 0.00 0.00 0.00 3.55
132 147 7.254590 GCTCTAGGTCAGTGCAATAAAATAGTG 60.255 40.741 0.00 0.00 42.23 2.74
143 158 0.972983 GGGAGCTCTAGGTCAGTGCA 60.973 60.000 14.64 0.00 44.54 4.57
145 160 0.394488 TCGGGAGCTCTAGGTCAGTG 60.394 60.000 14.64 0.90 43.82 3.66
147 162 1.104577 GGTCGGGAGCTCTAGGTCAG 61.105 65.000 14.64 4.88 43.82 3.51
148 163 1.076923 GGTCGGGAGCTCTAGGTCA 60.077 63.158 14.64 0.00 43.82 4.02
149 164 1.829096 GGGTCGGGAGCTCTAGGTC 60.829 68.421 14.64 0.46 41.50 3.85
151 166 2.907917 CGGGTCGGGAGCTCTAGG 60.908 72.222 14.64 3.27 0.00 3.02
152 167 1.726533 GAACGGGTCGGGAGCTCTAG 61.727 65.000 14.64 8.14 0.00 2.43
153 168 1.751927 GAACGGGTCGGGAGCTCTA 60.752 63.158 14.64 0.00 0.00 2.43
155 170 2.939261 TTGAACGGGTCGGGAGCTC 61.939 63.158 4.71 4.71 0.00 4.09
156 171 2.920912 TTGAACGGGTCGGGAGCT 60.921 61.111 0.00 0.00 0.00 4.09
157 172 2.741211 GTTGAACGGGTCGGGAGC 60.741 66.667 0.00 0.00 0.00 4.70
162 419 0.388134 ACGAGATGTTGAACGGGTCG 60.388 55.000 10.25 10.25 0.00 4.79
394 651 2.205307 ATAGTCTGTTAACGAGCGCC 57.795 50.000 2.29 0.00 0.00 6.53
427 684 5.702670 CCATACCTCCACATTCATCATGTAC 59.297 44.000 0.00 0.00 45.06 2.90
548 808 9.289303 GCATATTTTCATCTTACGTGACAATTT 57.711 29.630 0.00 0.00 30.89 1.82
549 809 7.639850 CGCATATTTTCATCTTACGTGACAATT 59.360 33.333 0.00 0.00 30.89 2.32
550 810 7.125755 CGCATATTTTCATCTTACGTGACAAT 58.874 34.615 0.00 0.00 32.51 2.71
574 834 2.160013 GCTCGTTAGTAACAGCACAACG 60.160 50.000 22.08 7.96 42.38 4.10
581 841 5.911615 CTCGTTAAGCTCGTTAGTAACAG 57.088 43.478 13.33 10.08 0.00 3.16
639 899 6.498304 ACAGAGCCAATAATTGATTTTAGCG 58.502 36.000 0.00 0.00 0.00 4.26
652 917 6.876789 TCGTTTCTTAATGAACAGAGCCAATA 59.123 34.615 3.08 0.00 33.88 1.90
694 959 1.568504 TGAGGGCTTGATAGTTCGGT 58.431 50.000 0.00 0.00 0.00 4.69
749 1015 3.403558 GAGGTGAGGAGGTGGGCC 61.404 72.222 0.00 0.00 0.00 5.80
854 1120 3.614616 GCGAGAAATCTGTCGTCAAATCT 59.385 43.478 0.00 0.00 40.35 2.40
988 1254 4.758251 CCACATGTCGGCCGAGCA 62.758 66.667 31.97 27.90 0.00 4.26
1335 1601 0.832135 TGAAGAGCGTGTCTCCCCTT 60.832 55.000 0.00 0.00 42.90 3.95
1433 1699 5.038683 TCGGTGCTACTACGATAACAAATG 58.961 41.667 0.00 0.00 0.00 2.32
1522 1788 8.282455 TCATCTCCAACTACTAACTTACAGAG 57.718 38.462 0.00 0.00 0.00 3.35
1636 1902 3.066291 ACTATCAAACAACGGATGGCA 57.934 42.857 0.00 0.00 0.00 4.92
1637 1903 3.560068 CCTACTATCAAACAACGGATGGC 59.440 47.826 0.00 0.00 0.00 4.40
1638 1904 4.127171 CCCTACTATCAAACAACGGATGG 58.873 47.826 0.00 0.00 0.00 3.51
1640 1906 5.687166 TTCCCTACTATCAAACAACGGAT 57.313 39.130 0.00 0.00 0.00 4.18
1641 1907 5.188163 TGATTCCCTACTATCAAACAACGGA 59.812 40.000 0.00 0.00 0.00 4.69
1649 1929 8.591940 CATTCTCTCATGATTCCCTACTATCAA 58.408 37.037 0.00 0.00 34.69 2.57
1686 1966 1.686355 AATCACGTGCAAGGAACCAA 58.314 45.000 11.67 0.00 0.00 3.67
1834 2136 0.759346 ACACTGGTCCCTGAACACTC 59.241 55.000 0.00 0.00 0.00 3.51
1866 2188 3.694072 CCCGTGCTAATGAAAAGATTCCA 59.306 43.478 0.00 0.00 34.49 3.53
1897 2219 1.630369 TCACCAGAAATGTCTCCCCAG 59.370 52.381 0.00 0.00 28.78 4.45
1905 2227 6.933514 AATAAAACCCATCACCAGAAATGT 57.066 33.333 0.00 0.00 0.00 2.71
1934 2256 9.417561 CCCAGCTCCATGAATCAAATAATATAT 57.582 33.333 0.00 0.00 0.00 0.86
1963 2285 4.789807 AGTGCTTTCCATGAATATCTGCT 58.210 39.130 0.00 0.00 0.00 4.24
1975 2297 4.890158 TCTCATCAACTAGTGCTTTCCA 57.110 40.909 0.00 0.00 0.00 3.53
2013 2335 7.969536 TTTTTCCTGTCTTCATACTTCTGAG 57.030 36.000 0.00 0.00 0.00 3.35
2031 2353 9.822185 ATGGCTGAGATTATTAACAATTTTTCC 57.178 29.630 0.00 0.00 0.00 3.13
2068 2394 8.226819 TGTAGATCCTACATTCAACTAGACAG 57.773 38.462 0.00 0.00 0.00 3.51
2076 2402 6.763135 GCTTCACATGTAGATCCTACATTCAA 59.237 38.462 14.83 8.53 36.13 2.69
2150 2476 8.678199 TGTTGTCACAATGTTCTAATAACACAA 58.322 29.630 0.00 0.00 32.37 3.33
2182 2508 1.280133 TGCAGGAGTCCCTCATTTCAG 59.720 52.381 5.25 0.00 42.02 3.02
2330 2656 5.422214 AGCTATGTACAGGTTGCTAACTT 57.578 39.130 0.33 0.00 0.00 2.66
2344 2670 8.148351 GGGTTTGTCAGTCATTATAGCTATGTA 58.852 37.037 16.77 4.74 0.00 2.29
2346 2672 6.992123 TGGGTTTGTCAGTCATTATAGCTATG 59.008 38.462 16.77 2.31 0.00 2.23
2347 2673 6.992715 GTGGGTTTGTCAGTCATTATAGCTAT 59.007 38.462 11.77 11.77 0.00 2.97
2369 2695 4.252878 ACAGCCAAAAACTTCTTTTGTGG 58.747 39.130 8.64 2.05 37.62 4.17
2378 2704 5.405935 AGACAGAAAACAGCCAAAAACTT 57.594 34.783 0.00 0.00 0.00 2.66
2389 2715 3.478857 TTTCGGCCTAGACAGAAAACA 57.521 42.857 0.00 0.00 32.05 2.83
2470 2796 8.195436 CGAACCATAACAGTCTTTTCCTAGATA 58.805 37.037 0.00 0.00 0.00 1.98
2543 2871 2.042162 TCGAGTTCCCTACCCAAGTACT 59.958 50.000 0.00 0.00 0.00 2.73
2550 2878 1.878734 CGTATCTCGAGTTCCCTACCC 59.121 57.143 13.13 0.00 42.86 3.69
2603 2931 4.202377 TGGAACGGAGGAAGTACAAATGAA 60.202 41.667 0.00 0.00 0.00 2.57
2615 2943 6.007703 ACTTCAATTATTTTGGAACGGAGGA 58.992 36.000 0.00 0.00 0.00 3.71
2669 2997 9.660180 GATTTCTCTATAGACTTGGTCAAACTT 57.340 33.333 0.00 0.00 34.60 2.66
2690 3018 6.586463 TGATATCGTAGATCTTTGCGGATTTC 59.414 38.462 0.00 3.29 45.12 2.17
2834 3166 8.313292 CCATTCCAAAATAATCAAAGTTCTGGA 58.687 33.333 0.00 0.00 0.00 3.86
2843 3175 5.363580 GCTCCCTCCATTCCAAAATAATCAA 59.636 40.000 0.00 0.00 0.00 2.57
2844 3176 4.895297 GCTCCCTCCATTCCAAAATAATCA 59.105 41.667 0.00 0.00 0.00 2.57
2845 3177 4.895297 TGCTCCCTCCATTCCAAAATAATC 59.105 41.667 0.00 0.00 0.00 1.75
2858 3190 0.902984 TTAACGAGCTGCTCCCTCCA 60.903 55.000 22.97 1.86 0.00 3.86
2859 3191 0.249398 TTTAACGAGCTGCTCCCTCC 59.751 55.000 22.97 0.00 0.00 4.30
3032 3448 0.680618 CTGCAGCATTGACCCCAAAA 59.319 50.000 0.00 0.00 35.67 2.44
3219 3635 1.274167 ACATGTCGCCTTTTAGTCGGA 59.726 47.619 0.00 0.00 0.00 4.55
3309 3725 7.988028 ACTCTATCTCGTATATCATCATTCCGA 59.012 37.037 0.00 0.00 0.00 4.55
3434 3850 0.391130 ATTCTCCGCACGCTTTAGCA 60.391 50.000 2.29 0.00 42.21 3.49
3467 3883 3.605634 CATGTCAAATTCGGTCTACCCA 58.394 45.455 0.00 0.00 0.00 4.51
3622 4038 2.817844 CAAACAAGTTGGGGTAGGCTAC 59.182 50.000 16.40 16.40 33.18 3.58
3648 4064 5.502220 GCATACAACAACAACAAAGCCTTTG 60.502 40.000 15.47 15.47 45.95 2.77
3716 4141 7.032377 TGATGATACAGTGACAGTTAGCTAG 57.968 40.000 0.00 0.00 0.00 3.42
3719 4144 8.084684 TCATATGATGATACAGTGACAGTTAGC 58.915 37.037 0.00 0.00 33.59 3.09
3728 4164 6.034161 TCCAGCTCATATGATGATACAGTG 57.966 41.667 5.72 0.00 38.85 3.66
3748 4184 3.706086 TGCAGTAGATCAAGTAGCATCCA 59.294 43.478 0.00 0.00 0.00 3.41
3750 4186 6.857777 AAATGCAGTAGATCAAGTAGCATC 57.142 37.500 11.34 0.00 40.00 3.91
3751 4187 7.052873 AGAAAATGCAGTAGATCAAGTAGCAT 58.947 34.615 0.00 1.18 42.40 3.79
3903 4339 3.374058 AGCAAAACCCACTATCGAAATCG 59.626 43.478 0.00 0.00 41.45 3.34
3910 4346 2.162408 GCTGTCAGCAAAACCCACTATC 59.838 50.000 20.16 0.00 41.89 2.08
4011 4447 4.043037 GGTAACTAACTCACCGATCCAG 57.957 50.000 0.00 0.00 0.00 3.86
4204 4640 7.390027 ACAGTGTAGATTAACTTGAGCAAGAT 58.610 34.615 16.47 7.65 40.79 2.40
4330 4766 7.254932 GCAGCAGAAGAAATATTTGGTAGTAGG 60.255 40.741 5.17 0.00 0.00 3.18
4372 4849 4.963373 TGAGAATGGAAACCAGTTCGTTA 58.037 39.130 0.00 0.00 36.75 3.18
4482 4962 2.223226 CGATGAAACATAACCATGCGCA 60.223 45.455 14.96 14.96 35.39 6.09
4557 5037 7.611467 AGCTATGACTAGAACTCCATATCTCTG 59.389 40.741 0.00 0.00 0.00 3.35
4558 5038 7.698912 AGCTATGACTAGAACTCCATATCTCT 58.301 38.462 0.00 0.00 0.00 3.10
4585 5065 5.964958 TCAAGAAAGCCCAGATACAAAAG 57.035 39.130 0.00 0.00 0.00 2.27
4649 5129 6.673316 GCAAGCCATAGTTTTCTTCTAAGACG 60.673 42.308 0.00 0.00 34.13 4.18
4652 5132 5.415701 TGGCAAGCCATAGTTTTCTTCTAAG 59.584 40.000 10.24 0.00 41.89 2.18
4817 5297 7.440856 GCCTTTGAATCAAACAAAAGGAATACA 59.559 33.333 13.25 0.00 36.91 2.29
4853 5339 5.989477 TCTATATGAACTTCCACACAAGGG 58.011 41.667 0.00 0.00 0.00 3.95
4947 5433 5.241728 ACCACTAGAAAGAAAGGCATTGTTC 59.758 40.000 0.00 0.00 0.00 3.18
4951 5437 6.431234 CAGTAACCACTAGAAAGAAAGGCATT 59.569 38.462 0.00 0.00 32.21 3.56
4977 5463 2.551032 ACCTTCGGTTAAAAGAAAGGCG 59.449 45.455 0.00 0.00 27.29 5.52
4979 5465 4.037565 AGCAACCTTCGGTTAAAAGAAAGG 59.962 41.667 0.00 0.00 45.01 3.11
4980 5466 4.976116 CAGCAACCTTCGGTTAAAAGAAAG 59.024 41.667 0.00 0.00 45.01 2.62
5007 5495 3.644606 CCCAGCCACAGAGCCACT 61.645 66.667 0.00 0.00 0.00 4.00
5029 5517 6.683974 AGATGGCTGTTGTTCATATAACAC 57.316 37.500 0.00 0.00 32.75 3.32
5030 5518 7.148086 GGAAAGATGGCTGTTGTTCATATAACA 60.148 37.037 0.00 0.00 34.68 2.41
5046 5534 6.705863 AGATGTAGAAAATGGAAAGATGGC 57.294 37.500 0.00 0.00 0.00 4.40
5093 5581 9.793252 GTTTCATTCAAGTAACATCAAGCATAT 57.207 29.630 0.00 0.00 0.00 1.78
5208 5696 7.308435 GGATAATGGATTTTAGCACAGCATAC 58.692 38.462 0.00 0.00 0.00 2.39
5212 5700 4.829492 AGGGATAATGGATTTTAGCACAGC 59.171 41.667 0.00 0.00 0.00 4.40
5230 5719 4.038633 GGAAAGTAGGGAGTAACAGGGAT 58.961 47.826 0.00 0.00 0.00 3.85
5259 5748 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
5260 5749 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
5261 5750 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
5262 5751 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
5263 5752 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
5264 5753 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
5265 5754 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
5266 5755 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
5267 5756 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
5268 5757 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
5269 5758 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
5270 5759 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
5271 5760 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
5272 5761 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
5273 5762 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
5274 5763 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
5275 5764 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
5276 5765 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
5277 5766 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
5278 5767 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
5279 5768 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
5280 5769 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
5281 5770 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
5282 5771 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
5283 5772 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
5284 5773 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
5285 5774 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
5286 5775 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
5287 5776 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
5288 5777 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
5289 5778 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
5290 5779 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
5291 5780 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
5292 5781 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
5293 5782 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
5294 5783 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
5295 5784 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
5296 5785 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
5297 5786 6.148480 ACAGTGTAGATTCACTCATTTTGCTC 59.852 38.462 0.00 0.00 45.37 4.26
5298 5787 6.000219 ACAGTGTAGATTCACTCATTTTGCT 59.000 36.000 0.00 0.00 45.37 3.91
5299 5788 6.246420 ACAGTGTAGATTCACTCATTTTGC 57.754 37.500 0.00 0.00 45.37 3.68
5326 5815 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
5328 5817 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
5329 5818 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
5330 5819 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
5331 5820 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
5332 5821 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
5333 5822 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
5334 5823 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
5335 5824 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
5336 5825 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
5337 5826 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
5372 5861 9.350951 CCCTCCGTTCCTAAATATTTATCTTTT 57.649 33.333 8.34 0.00 0.00 2.27
5373 5862 8.720537 TCCCTCCGTTCCTAAATATTTATCTTT 58.279 33.333 8.34 0.00 0.00 2.52
5374 5863 8.271398 TCCCTCCGTTCCTAAATATTTATCTT 57.729 34.615 8.34 0.00 0.00 2.40
5375 5864 7.513091 ACTCCCTCCGTTCCTAAATATTTATCT 59.487 37.037 8.34 0.00 0.00 1.98
5376 5865 7.677892 ACTCCCTCCGTTCCTAAATATTTATC 58.322 38.462 8.34 0.61 0.00 1.75
5377 5866 7.628501 ACTCCCTCCGTTCCTAAATATTTAT 57.371 36.000 8.34 0.00 0.00 1.40
5378 5867 7.786464 AGTACTCCCTCCGTTCCTAAATATTTA 59.214 37.037 7.66 7.66 0.00 1.40
5379 5868 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5380 5869 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
5381 5870 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
5382 5871 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
5383 5872 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
5384 5873 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
5385 5874 3.094572 CAAGTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
5386 5875 2.731572 CAAGTACTCCCTCCGTTCCTA 58.268 52.381 0.00 0.00 0.00 2.94
5387 5876 1.558233 CAAGTACTCCCTCCGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
5388 5877 0.108281 GCAAGTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
5389 5878 0.108281 GGCAAGTACTCCCTCCGTTC 60.108 60.000 0.00 0.00 0.00 3.95
5390 5879 0.834687 TGGCAAGTACTCCCTCCGTT 60.835 55.000 12.28 0.00 0.00 4.44
5391 5880 0.617820 ATGGCAAGTACTCCCTCCGT 60.618 55.000 12.28 3.67 0.00 4.69
5392 5881 0.541863 AATGGCAAGTACTCCCTCCG 59.458 55.000 12.28 0.00 0.00 4.63
5393 5882 1.282157 ACAATGGCAAGTACTCCCTCC 59.718 52.381 12.28 5.28 0.00 4.30
5394 5883 2.027192 TCACAATGGCAAGTACTCCCTC 60.027 50.000 12.28 0.00 0.00 4.30
5395 5884 1.985159 TCACAATGGCAAGTACTCCCT 59.015 47.619 12.28 0.00 0.00 4.20
5396 5885 2.489938 TCACAATGGCAAGTACTCCC 57.510 50.000 0.00 0.21 0.00 4.30
5397 5886 4.023707 GCATATCACAATGGCAAGTACTCC 60.024 45.833 0.00 0.00 0.00 3.85
5398 5887 4.818546 AGCATATCACAATGGCAAGTACTC 59.181 41.667 0.00 0.00 0.00 2.59
5399 5888 4.785301 AGCATATCACAATGGCAAGTACT 58.215 39.130 0.00 0.00 0.00 2.73
5400 5889 5.505173 AAGCATATCACAATGGCAAGTAC 57.495 39.130 0.00 0.00 0.00 2.73
5467 5956 5.298276 TCCTTCAATTGTTGTCACCTGTTAC 59.702 40.000 5.13 0.00 0.00 2.50
5474 5963 4.610945 CACCTTCCTTCAATTGTTGTCAC 58.389 43.478 5.13 0.00 0.00 3.67
5622 6278 5.045869 CACTTATTTTGGGACAGAGGGAGTA 60.046 44.000 0.00 0.00 42.39 2.59
5623 6279 3.916989 ACTTATTTTGGGACAGAGGGAGT 59.083 43.478 0.00 0.00 42.39 3.85
5624 6280 4.263506 ACACTTATTTTGGGACAGAGGGAG 60.264 45.833 0.00 0.00 42.39 4.30
5625 6281 3.655777 ACACTTATTTTGGGACAGAGGGA 59.344 43.478 0.00 0.00 42.39 4.20
5626 6282 4.034285 ACACTTATTTTGGGACAGAGGG 57.966 45.455 0.00 0.00 42.39 4.30
5627 6283 4.321230 GCAACACTTATTTTGGGACAGAGG 60.321 45.833 0.00 0.00 42.39 3.69
5628 6284 4.520492 AGCAACACTTATTTTGGGACAGAG 59.480 41.667 0.00 0.00 42.39 3.35
5629 6285 4.278170 CAGCAACACTTATTTTGGGACAGA 59.722 41.667 0.00 0.00 42.39 3.41
5630 6286 4.278170 TCAGCAACACTTATTTTGGGACAG 59.722 41.667 0.00 0.00 42.39 3.51
5631 6287 4.211125 TCAGCAACACTTATTTTGGGACA 58.789 39.130 0.00 0.00 0.00 4.02
5632 6288 4.846779 TCAGCAACACTTATTTTGGGAC 57.153 40.909 0.00 0.00 0.00 4.46
5633 6289 6.418057 AAATCAGCAACACTTATTTTGGGA 57.582 33.333 0.00 0.00 29.68 4.37
5634 6290 7.378181 ACTAAATCAGCAACACTTATTTTGGG 58.622 34.615 0.00 0.00 34.69 4.12
5635 6291 9.341899 GTACTAAATCAGCAACACTTATTTTGG 57.658 33.333 0.00 0.00 34.69 3.28
5636 6292 9.891828 TGTACTAAATCAGCAACACTTATTTTG 57.108 29.630 0.00 0.00 34.69 2.44
5638 6294 9.893305 GTTGTACTAAATCAGCAACACTTATTT 57.107 29.630 0.00 0.00 39.17 1.40
5639 6295 9.284968 AGTTGTACTAAATCAGCAACACTTATT 57.715 29.630 0.00 0.00 41.07 1.40
5640 6296 8.848474 AGTTGTACTAAATCAGCAACACTTAT 57.152 30.769 0.00 0.00 41.07 1.73
5641 6297 8.671384 AAGTTGTACTAAATCAGCAACACTTA 57.329 30.769 0.00 0.00 41.07 2.24
5642 6298 7.568199 AAGTTGTACTAAATCAGCAACACTT 57.432 32.000 0.00 0.00 41.07 3.16
5643 6299 7.067008 ACAAAGTTGTACTAAATCAGCAACACT 59.933 33.333 0.00 0.00 41.07 3.55
5644 6300 7.193595 ACAAAGTTGTACTAAATCAGCAACAC 58.806 34.615 0.00 0.00 41.07 3.32
5645 6301 7.328277 ACAAAGTTGTACTAAATCAGCAACA 57.672 32.000 0.00 0.00 41.07 3.33
5659 6315 6.982160 TTACAGAGGGAGTACAAAGTTGTA 57.018 37.500 0.00 0.00 42.35 2.41
5660 6316 5.881923 TTACAGAGGGAGTACAAAGTTGT 57.118 39.130 1.75 1.75 44.86 3.32
5661 6317 6.522054 TCTTTACAGAGGGAGTACAAAGTTG 58.478 40.000 0.00 0.00 0.00 3.16
5662 6318 6.742559 TCTTTACAGAGGGAGTACAAAGTT 57.257 37.500 0.00 0.00 0.00 2.66
5663 6319 6.742559 TTCTTTACAGAGGGAGTACAAAGT 57.257 37.500 0.00 0.00 0.00 2.66
5664 6320 9.152595 GTATTTCTTTACAGAGGGAGTACAAAG 57.847 37.037 0.00 0.00 0.00 2.77
5665 6321 8.653191 TGTATTTCTTTACAGAGGGAGTACAAA 58.347 33.333 0.00 0.00 0.00 2.83
5666 6322 8.197592 TGTATTTCTTTACAGAGGGAGTACAA 57.802 34.615 0.00 0.00 0.00 2.41
5667 6323 7.786046 TGTATTTCTTTACAGAGGGAGTACA 57.214 36.000 0.00 0.00 0.00 2.90
5668 6324 8.529476 TCTTGTATTTCTTTACAGAGGGAGTAC 58.471 37.037 0.00 0.00 33.81 2.73
5669 6325 8.660295 TCTTGTATTTCTTTACAGAGGGAGTA 57.340 34.615 0.00 0.00 33.81 2.59
5670 6326 7.554959 TCTTGTATTTCTTTACAGAGGGAGT 57.445 36.000 0.00 0.00 33.81 3.85
5671 6327 6.536941 GCTCTTGTATTTCTTTACAGAGGGAG 59.463 42.308 0.00 0.00 33.81 4.30
5672 6328 6.407202 GCTCTTGTATTTCTTTACAGAGGGA 58.593 40.000 0.00 0.00 33.81 4.20
5673 6329 5.292101 CGCTCTTGTATTTCTTTACAGAGGG 59.708 44.000 0.00 0.00 35.98 4.30
5674 6330 5.869888 ACGCTCTTGTATTTCTTTACAGAGG 59.130 40.000 0.00 0.00 33.81 3.69
5675 6331 6.952935 ACGCTCTTGTATTTCTTTACAGAG 57.047 37.500 0.00 0.00 33.81 3.35
5676 6332 7.724305 AAACGCTCTTGTATTTCTTTACAGA 57.276 32.000 0.00 0.00 33.81 3.41
5677 6333 8.922676 TCTAAACGCTCTTGTATTTCTTTACAG 58.077 33.333 0.00 0.00 33.81 2.74
5678 6334 8.821147 TCTAAACGCTCTTGTATTTCTTTACA 57.179 30.769 0.00 0.00 0.00 2.41
5679 6335 9.903185 GATCTAAACGCTCTTGTATTTCTTTAC 57.097 33.333 0.00 0.00 0.00 2.01
5680 6336 9.647797 TGATCTAAACGCTCTTGTATTTCTTTA 57.352 29.630 0.00 0.00 0.00 1.85
5681 6337 8.443937 GTGATCTAAACGCTCTTGTATTTCTTT 58.556 33.333 0.00 0.00 0.00 2.52
5682 6338 7.819900 AGTGATCTAAACGCTCTTGTATTTCTT 59.180 33.333 0.00 0.00 0.00 2.52
5683 6339 7.324178 AGTGATCTAAACGCTCTTGTATTTCT 58.676 34.615 0.00 0.00 0.00 2.52
5684 6340 7.527084 AGTGATCTAAACGCTCTTGTATTTC 57.473 36.000 0.00 0.00 0.00 2.17
5685 6341 8.467598 TCTAGTGATCTAAACGCTCTTGTATTT 58.532 33.333 0.00 0.00 0.00 1.40
5686 6342 7.997482 TCTAGTGATCTAAACGCTCTTGTATT 58.003 34.615 0.00 0.00 0.00 1.89
5687 6343 7.569639 TCTAGTGATCTAAACGCTCTTGTAT 57.430 36.000 0.00 0.00 0.00 2.29
5688 6344 6.997239 TCTAGTGATCTAAACGCTCTTGTA 57.003 37.500 0.00 0.00 0.00 2.41
5689 6345 5.899120 TCTAGTGATCTAAACGCTCTTGT 57.101 39.130 0.00 0.00 0.00 3.16
5690 6346 6.416455 GTGATCTAGTGATCTAAACGCTCTTG 59.584 42.308 7.42 0.00 46.84 3.02
5691 6347 6.320164 AGTGATCTAGTGATCTAAACGCTCTT 59.680 38.462 7.42 0.00 46.84 2.85
5692 6348 5.825679 AGTGATCTAGTGATCTAAACGCTCT 59.174 40.000 7.42 0.00 46.84 4.09
5693 6349 6.067263 AGTGATCTAGTGATCTAAACGCTC 57.933 41.667 7.42 0.00 46.84 5.03
5694 6350 7.569639 TTAGTGATCTAGTGATCTAAACGCT 57.430 36.000 7.42 0.00 46.84 5.07
5695 6351 7.916450 ACTTTAGTGATCTAGTGATCTAAACGC 59.084 37.037 7.42 0.00 46.84 4.84
5714 6370 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
5715 6371 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
5730 6386 9.654663 ACTCAGTAAAGAAATATAAGAGCGTTT 57.345 29.630 0.00 0.00 0.00 3.60
5731 6387 9.088512 CACTCAGTAAAGAAATATAAGAGCGTT 57.911 33.333 0.00 0.00 0.00 4.84
5732 6388 8.467598 TCACTCAGTAAAGAAATATAAGAGCGT 58.532 33.333 0.00 0.00 0.00 5.07
5733 6389 8.858003 TCACTCAGTAAAGAAATATAAGAGCG 57.142 34.615 0.00 0.00 0.00 5.03
5734 6390 9.810545 ACTCACTCAGTAAAGAAATATAAGAGC 57.189 33.333 0.00 0.00 31.37 4.09
5744 6400 9.745880 CAACTTTAGTACTCACTCAGTAAAGAA 57.254 33.333 14.43 0.00 39.44 2.52
5745 6401 8.910944 ACAACTTTAGTACTCACTCAGTAAAGA 58.089 33.333 14.43 0.00 39.44 2.52
5747 6403 9.956720 GTACAACTTTAGTACTCACTCAGTAAA 57.043 33.333 0.00 0.00 39.44 2.01
5748 6404 9.347240 AGTACAACTTTAGTACTCACTCAGTAA 57.653 33.333 0.00 0.00 46.80 2.24
5749 6405 8.915057 AGTACAACTTTAGTACTCACTCAGTA 57.085 34.615 0.00 0.00 46.80 2.74
5750 6406 7.820578 AGTACAACTTTAGTACTCACTCAGT 57.179 36.000 0.00 0.00 46.80 3.41
5751 6407 9.217278 TCTAGTACAACTTTAGTACTCACTCAG 57.783 37.037 9.05 2.50 46.80 3.35
5752 6408 9.736414 ATCTAGTACAACTTTAGTACTCACTCA 57.264 33.333 9.05 0.00 46.80 3.41
5753 6409 9.991388 CATCTAGTACAACTTTAGTACTCACTC 57.009 37.037 9.05 0.00 46.80 3.51
5754 6410 9.736414 TCATCTAGTACAACTTTAGTACTCACT 57.264 33.333 9.05 0.00 46.80 3.41
5755 6411 9.991388 CTCATCTAGTACAACTTTAGTACTCAC 57.009 37.037 9.05 0.00 46.80 3.51
5756 6412 8.675504 GCTCATCTAGTACAACTTTAGTACTCA 58.324 37.037 9.05 0.00 46.80 3.41
5757 6413 7.851963 CGCTCATCTAGTACAACTTTAGTACTC 59.148 40.741 9.05 0.00 46.80 2.59
5759 6415 7.639461 GTCGCTCATCTAGTACAACTTTAGTAC 59.361 40.741 0.00 0.00 41.59 2.73
5760 6416 7.335171 TGTCGCTCATCTAGTACAACTTTAGTA 59.665 37.037 0.00 0.00 0.00 1.82
5761 6417 6.150641 TGTCGCTCATCTAGTACAACTTTAGT 59.849 38.462 0.00 0.00 0.00 2.24
5762 6418 6.552629 TGTCGCTCATCTAGTACAACTTTAG 58.447 40.000 0.00 0.00 0.00 1.85
5763 6419 6.150641 ACTGTCGCTCATCTAGTACAACTTTA 59.849 38.462 0.00 0.00 0.00 1.85
5764 6420 5.047943 ACTGTCGCTCATCTAGTACAACTTT 60.048 40.000 0.00 0.00 0.00 2.66
5765 6421 4.459685 ACTGTCGCTCATCTAGTACAACTT 59.540 41.667 0.00 0.00 0.00 2.66
5766 6422 4.011023 ACTGTCGCTCATCTAGTACAACT 58.989 43.478 0.00 0.00 0.00 3.16
5767 6423 4.358494 ACTGTCGCTCATCTAGTACAAC 57.642 45.455 0.00 0.00 0.00 3.32
5768 6424 6.694877 ATAACTGTCGCTCATCTAGTACAA 57.305 37.500 0.00 0.00 0.00 2.41
5769 6425 6.694877 AATAACTGTCGCTCATCTAGTACA 57.305 37.500 0.00 0.00 0.00 2.90
5770 6426 7.701078 TCAAAATAACTGTCGCTCATCTAGTAC 59.299 37.037 0.00 0.00 0.00 2.73
5771 6427 7.768240 TCAAAATAACTGTCGCTCATCTAGTA 58.232 34.615 0.00 0.00 0.00 1.82
5772 6428 6.631016 TCAAAATAACTGTCGCTCATCTAGT 58.369 36.000 0.00 0.00 0.00 2.57
5773 6429 6.975197 TCTCAAAATAACTGTCGCTCATCTAG 59.025 38.462 0.00 0.00 0.00 2.43
5774 6430 6.752351 GTCTCAAAATAACTGTCGCTCATCTA 59.248 38.462 0.00 0.00 0.00 1.98
5775 6431 5.578727 GTCTCAAAATAACTGTCGCTCATCT 59.421 40.000 0.00 0.00 0.00 2.90
5776 6432 5.499334 CGTCTCAAAATAACTGTCGCTCATC 60.499 44.000 0.00 0.00 0.00 2.92
5777 6433 4.327357 CGTCTCAAAATAACTGTCGCTCAT 59.673 41.667 0.00 0.00 0.00 2.90
5778 6434 3.673338 CGTCTCAAAATAACTGTCGCTCA 59.327 43.478 0.00 0.00 0.00 4.26
5779 6435 3.060895 CCGTCTCAAAATAACTGTCGCTC 59.939 47.826 0.00 0.00 0.00 5.03
5780 6436 2.993899 CCGTCTCAAAATAACTGTCGCT 59.006 45.455 0.00 0.00 0.00 4.93
5781 6437 2.991190 TCCGTCTCAAAATAACTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
5782 6438 3.612860 CCTCCGTCTCAAAATAACTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
5783 6439 3.933332 CCCTCCGTCTCAAAATAACTGTC 59.067 47.826 0.00 0.00 0.00 3.51
5784 6440 3.581332 TCCCTCCGTCTCAAAATAACTGT 59.419 43.478 0.00 0.00 0.00 3.55
5785 6441 4.184629 CTCCCTCCGTCTCAAAATAACTG 58.815 47.826 0.00 0.00 0.00 3.16
5786 6442 3.838903 ACTCCCTCCGTCTCAAAATAACT 59.161 43.478 0.00 0.00 0.00 2.24
5787 6443 4.203654 ACTCCCTCCGTCTCAAAATAAC 57.796 45.455 0.00 0.00 0.00 1.89
5788 6444 5.021458 ACTACTCCCTCCGTCTCAAAATAA 58.979 41.667 0.00 0.00 0.00 1.40
5789 6445 4.607239 ACTACTCCCTCCGTCTCAAAATA 58.393 43.478 0.00 0.00 0.00 1.40
5790 6446 3.442076 ACTACTCCCTCCGTCTCAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
5791 6447 2.885616 ACTACTCCCTCCGTCTCAAAA 58.114 47.619 0.00 0.00 0.00 2.44
5792 6448 2.599408 ACTACTCCCTCCGTCTCAAA 57.401 50.000 0.00 0.00 0.00 2.69
5793 6449 2.561419 CAAACTACTCCCTCCGTCTCAA 59.439 50.000 0.00 0.00 0.00 3.02
5794 6450 2.168496 CAAACTACTCCCTCCGTCTCA 58.832 52.381 0.00 0.00 0.00 3.27
5795 6451 2.169330 ACAAACTACTCCCTCCGTCTC 58.831 52.381 0.00 0.00 0.00 3.36
5796 6452 2.299297 CAACAAACTACTCCCTCCGTCT 59.701 50.000 0.00 0.00 0.00 4.18
5797 6453 2.036862 ACAACAAACTACTCCCTCCGTC 59.963 50.000 0.00 0.00 0.00 4.79
5798 6454 2.044758 ACAACAAACTACTCCCTCCGT 58.955 47.619 0.00 0.00 0.00 4.69
5799 6455 2.036733 TCACAACAAACTACTCCCTCCG 59.963 50.000 0.00 0.00 0.00 4.63
5800 6456 3.764237 TCACAACAAACTACTCCCTCC 57.236 47.619 0.00 0.00 0.00 4.30
5801 6457 4.704965 ACTTCACAACAAACTACTCCCTC 58.295 43.478 0.00 0.00 0.00 4.30
5802 6458 4.772886 ACTTCACAACAAACTACTCCCT 57.227 40.909 0.00 0.00 0.00 4.20
5803 6459 5.830000 AAACTTCACAACAAACTACTCCC 57.170 39.130 0.00 0.00 0.00 4.30
5804 6460 8.456471 AGTTTAAACTTCACAACAAACTACTCC 58.544 33.333 15.22 0.00 35.21 3.85
5805 6461 9.836076 AAGTTTAAACTTCACAACAAACTACTC 57.164 29.630 24.66 0.00 45.65 2.59
5888 6547 6.716628 AGGAAAGCAGTGATTCTTTCATAACA 59.283 34.615 17.89 0.00 45.98 2.41
5911 6570 9.626045 GGAAAGTACAAATCAAAATTACTGAGG 57.374 33.333 0.00 0.00 0.00 3.86
5931 6590 7.624360 TCTTTGCATAAATATGACGGAAAGT 57.376 32.000 4.63 0.00 35.75 2.66
5949 6608 9.129209 GATTACCAACTAAAGTCAATTCTTTGC 57.871 33.333 3.09 0.00 38.02 3.68
5976 6637 1.398390 GAAACGACTGCATCCCATGTC 59.602 52.381 0.00 0.00 0.00 3.06
6069 6732 4.447138 AACCTGGTGTTGAGAATAACCA 57.553 40.909 0.00 0.00 35.31 3.67
6477 7140 5.012046 TCTGTGGAGAGCATTAAGTCTTGAA 59.988 40.000 0.00 0.00 0.00 2.69
6591 7254 6.150140 AGACAAAAACATCTATGAAGACAGCC 59.850 38.462 0.00 0.00 33.57 4.85
6626 7296 9.803315 GCTCCTTTCATACCCTTTATTAAAAAG 57.197 33.333 0.00 0.00 0.00 2.27
6627 7297 9.541884 AGCTCCTTTCATACCCTTTATTAAAAA 57.458 29.630 0.00 0.00 0.00 1.94
6628 7298 9.541884 AAGCTCCTTTCATACCCTTTATTAAAA 57.458 29.630 0.00 0.00 0.00 1.52
6630 7300 9.623000 GTAAGCTCCTTTCATACCCTTTATTAA 57.377 33.333 0.00 0.00 0.00 1.40
6631 7301 8.215736 GGTAAGCTCCTTTCATACCCTTTATTA 58.784 37.037 0.00 0.00 31.78 0.98
6632 7302 7.061054 GGTAAGCTCCTTTCATACCCTTTATT 58.939 38.462 0.00 0.00 31.78 1.40
6824 7494 5.227569 TCTATGCCCACACCATTACTATG 57.772 43.478 0.00 0.00 0.00 2.23
7002 7679 8.832521 CAGACAAAACTACCATTGTAACTTACA 58.167 33.333 0.00 0.00 39.73 2.41
7033 7710 4.880759 TGAAATGTTGCCTGGTTGTAATG 58.119 39.130 0.00 0.00 0.00 1.90
7397 8076 8.696043 ATATGCACACACCAATAATAGTCATT 57.304 30.769 0.00 0.00 0.00 2.57
7612 8292 3.925688 AATTATAGCGCAGTTGACACG 57.074 42.857 11.47 0.00 0.00 4.49
7884 8565 0.171903 AAGGAAACGATGCATGCTGC 59.828 50.000 20.33 9.71 45.29 5.25
7916 8597 5.393124 TGTACAAGGACAAACGACGTATAG 58.607 41.667 0.00 0.00 0.00 1.31
7922 8603 4.034742 ACACAATGTACAAGGACAAACGAC 59.965 41.667 0.00 0.00 31.83 4.34
7932 8613 5.452078 ACCCATCAAACACAATGTACAAG 57.548 39.130 0.00 0.00 0.00 3.16
7941 8622 4.019858 TGTTTCAGAACCCATCAAACACA 58.980 39.130 0.00 0.00 33.17 3.72
8215 8906 4.782019 TTTTCTGTCAAGTTGCAGTTGT 57.218 36.364 19.81 0.00 34.57 3.32
8375 9069 0.515127 TAATGCTTGACACAACGGCG 59.485 50.000 4.80 4.80 0.00 6.46
8463 9161 1.330521 TCACGAAAACTTCAGCACAGC 59.669 47.619 0.00 0.00 0.00 4.40
8488 9186 5.538433 ACCTAATTGGCACTTGTTACACAAT 59.462 36.000 0.00 0.00 37.05 2.71
8536 9234 4.328983 CACTTGATGGATTGCAGCATTTTC 59.671 41.667 0.00 0.00 0.00 2.29
8586 9284 3.496884 TGCGGTCAGTGACAAATAAGAAC 59.503 43.478 24.20 3.20 33.68 3.01
8682 9380 9.539825 GATATCTGATTGTTCAACTGTCACTAT 57.460 33.333 0.00 0.00 0.00 2.12
8724 9422 9.975218 AACTTCAGTAATATTGAAACCCACTAT 57.025 29.630 0.00 0.00 34.41 2.12
8778 9476 9.647918 TGAGTTAGATACATGGTATCTTCTCTT 57.352 33.333 27.28 14.04 36.28 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.