Multiple sequence alignment - TraesCS5A01G202800
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5A01G202800
chr5A
100.000
4303
0
0
1
4303
410505047
410500745
0.000000e+00
7947.0
1
TraesCS5A01G202800
chr5B
95.098
3937
133
20
8
3916
364132854
364128950
0.000000e+00
6146.0
2
TraesCS5A01G202800
chr5B
84.010
394
30
17
3912
4293
364128743
364128371
8.860000e-92
348.0
3
TraesCS5A01G202800
chr5B
89.062
64
7
0
28
91
364132882
364132819
3.570000e-11
80.5
4
TraesCS5A01G202800
chr5B
100.000
34
0
0
194
227
364132869
364132836
3.590000e-06
63.9
5
TraesCS5A01G202800
chr5B
97.222
36
1
0
8
43
364132806
364132771
1.290000e-05
62.1
6
TraesCS5A01G202800
chr5D
95.157
3861
141
20
28
3855
315929144
315925297
0.000000e+00
6052.0
7
TraesCS5A01G202800
chr5D
93.843
471
16
8
3840
4303
315924576
315924112
0.000000e+00
697.0
8
TraesCS5A01G202800
chr5D
96.460
113
4
0
84
196
282007006
282007118
2.040000e-43
187.0
9
TraesCS5A01G202800
chr5D
97.436
39
1
0
29
67
315929180
315929142
2.780000e-07
67.6
10
TraesCS5A01G202800
chr5D
100.000
34
0
0
194
227
315929131
315929098
3.590000e-06
63.9
11
TraesCS5A01G202800
chr5D
100.000
31
0
0
8
38
315929116
315929086
1.670000e-04
58.4
12
TraesCS5A01G202800
chr3D
99.074
108
1
0
89
196
463716864
463716971
1.220000e-45
195.0
13
TraesCS5A01G202800
chr6A
98.131
107
2
0
90
196
222555005
222554899
2.040000e-43
187.0
14
TraesCS5A01G202800
chr6A
95.000
40
0
2
3521
3559
608859311
608859349
1.290000e-05
62.1
15
TraesCS5A01G202800
chr3B
98.131
107
2
0
90
196
505264572
505264678
2.040000e-43
187.0
16
TraesCS5A01G202800
chr2D
95.652
115
5
0
84
198
473292193
473292307
7.350000e-43
185.0
17
TraesCS5A01G202800
chr2D
94.068
118
5
2
81
196
625519539
625519656
1.230000e-40
178.0
18
TraesCS5A01G202800
chr7D
93.443
122
6
2
84
204
600224509
600224629
3.420000e-41
180.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5A01G202800
chr5A
410500745
410505047
4302
True
7947.00
7947
100.0000
1
4303
1
chr5A.!!$R1
4302
1
TraesCS5A01G202800
chr5B
364128371
364132882
4511
True
1340.10
6146
93.0784
8
4293
5
chr5B.!!$R1
4285
2
TraesCS5A01G202800
chr5D
315924112
315929180
5068
True
1387.78
6052
97.2872
8
4303
5
chr5D.!!$R1
4295
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
72
94
2.589664
TCTCCTCTGGGAAGAAGATCCT
59.410
50.000
0.00
0.00
41.69
3.24
F
73
95
2.699846
CTCCTCTGGGAAGAAGATCCTG
59.300
54.545
0.00
0.00
41.69
3.86
F
844
888
2.788786
GACACAAGTGACGCCAAAATTG
59.211
45.455
7.28
0.00
0.00
2.32
F
2120
2171
0.251253
TCATGACTGTTGGCCATGCA
60.251
50.000
6.09
8.44
37.99
3.96
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1455
1506
0.038892
TGAACGAACTCGGGTGCTAC
60.039
55.000
3.88
0.0
44.95
3.58
R
1544
1595
3.118629
TCCAGATCATCTGTTGGTGCTAC
60.119
47.826
13.82
0.0
42.80
3.58
R
2238
2289
0.883833
CCGCTGCATCAAAGTTCCTT
59.116
50.000
0.00
0.0
0.00
3.36
R
3695
3773
1.177401
GGATTGACAGGAAAGGCACC
58.823
55.000
0.00
0.0
0.00
5.01
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
60
82
6.648879
TTGGTAATTGTTTTTCTCCTCTGG
57.351
37.500
0.00
0.00
0.00
3.86
66
88
4.788925
TGTTTTTCTCCTCTGGGAAGAA
57.211
40.909
0.00
0.00
41.69
2.52
69
91
5.073691
TGTTTTTCTCCTCTGGGAAGAAGAT
59.926
40.000
0.00
0.00
41.69
2.40
72
94
2.589664
TCTCCTCTGGGAAGAAGATCCT
59.410
50.000
0.00
0.00
41.69
3.24
73
95
2.699846
CTCCTCTGGGAAGAAGATCCTG
59.300
54.545
0.00
0.00
41.69
3.86
169
191
3.132111
TGCTAGATACATCCGTTTGAGCA
59.868
43.478
0.00
0.00
35.18
4.26
180
202
6.205853
ACATCCGTTTGAGCAACAACTAATAA
59.794
34.615
0.00
0.00
38.29
1.40
327
352
6.254281
ACTAAAAACACATAATTGAGCGCT
57.746
33.333
11.27
11.27
0.00
5.92
344
369
8.662781
TTGAGCGCTTTAACTCTAATATGATT
57.337
30.769
13.26
0.00
33.92
2.57
498
532
7.379098
TCAGATAGTGGAATAGCTACATACG
57.621
40.000
0.00
0.00
0.00
3.06
617
651
6.444002
ATTGGGTAAGCAAGTTGCACAAGTA
61.444
40.000
28.65
10.21
45.95
2.24
844
888
2.788786
GACACAAGTGACGCCAAAATTG
59.211
45.455
7.28
0.00
0.00
2.32
914
959
6.803154
ATTGGTCTACAGAAAGCTTAACAC
57.197
37.500
0.00
0.00
0.00
3.32
967
1012
8.770438
ACATTTTAAGTTTTGCACAAAAGAGA
57.230
26.923
8.73
0.00
40.53
3.10
968
1013
9.213799
ACATTTTAAGTTTTGCACAAAAGAGAA
57.786
25.926
8.73
1.52
40.53
2.87
999
1048
3.512033
TTTTTGGAGTTGGTGGAAACG
57.488
42.857
0.00
0.00
35.13
3.60
1238
1287
4.142687
ACATGCATTTGTAACTACGCCTTC
60.143
41.667
0.00
0.00
0.00
3.46
1242
1291
4.436986
GCATTTGTAACTACGCCTTCCTTC
60.437
45.833
0.00
0.00
0.00
3.46
1244
1293
4.612264
TTGTAACTACGCCTTCCTTCTT
57.388
40.909
0.00
0.00
0.00
2.52
1267
1318
4.582869
TCTGTTGCAGAGTTGAAGCATAT
58.417
39.130
0.00
0.00
35.39
1.78
1268
1319
5.733676
TCTGTTGCAGAGTTGAAGCATATA
58.266
37.500
0.00
0.00
35.39
0.86
1270
1321
6.092670
TCTGTTGCAGAGTTGAAGCATATAAC
59.907
38.462
0.00
0.00
35.39
1.89
1271
1322
5.704978
TGTTGCAGAGTTGAAGCATATAACA
59.295
36.000
0.00
0.00
38.19
2.41
1272
1323
6.375174
TGTTGCAGAGTTGAAGCATATAACAT
59.625
34.615
0.00
0.00
38.19
2.71
1273
1324
7.552330
TGTTGCAGAGTTGAAGCATATAACATA
59.448
33.333
0.00
0.00
38.19
2.29
1455
1506
5.064707
CAGGTGATTTTTGTGGTATACCTCG
59.935
44.000
22.41
0.00
35.25
4.63
1544
1595
4.402056
AGTACTTGGAATATCGGTGGTG
57.598
45.455
0.00
0.00
0.00
4.17
1838
1889
4.733405
GCACTAAACAAAAAGAAGACACGG
59.267
41.667
0.00
0.00
0.00
4.94
2059
2110
2.034558
ACAAGGTACACATTGCTTGCAC
59.965
45.455
6.66
0.00
40.89
4.57
2073
2124
7.067859
ACATTGCTTGCACTCATGAGTATTAAT
59.932
33.333
27.44
17.40
40.20
1.40
2119
2170
0.454600
CTCATGACTGTTGGCCATGC
59.545
55.000
6.09
3.07
37.99
4.06
2120
2171
0.251253
TCATGACTGTTGGCCATGCA
60.251
50.000
6.09
8.44
37.99
3.96
2238
2289
0.698238
AACAAGGGGATGTGCTGCTA
59.302
50.000
0.00
0.00
32.81
3.49
2344
2403
4.491676
TCACGAGTAAGTTTACAGCATCC
58.508
43.478
4.97
0.00
36.12
3.51
2367
2432
2.930040
CACCTCATGTGTTCGTATGTCC
59.070
50.000
0.00
0.00
40.26
4.02
2373
2438
2.839975
TGTGTTCGTATGTCCTTTGCA
58.160
42.857
0.00
0.00
0.00
4.08
2414
2479
2.956132
TCTTCAACAGGCAATCCCAAA
58.044
42.857
0.00
0.00
35.39
3.28
2514
2585
7.917505
CCAATGATTGCATTCTTTAGTCCTTAC
59.082
37.037
9.81
0.00
42.66
2.34
2661
2733
8.954950
TTTGGTCATGACATTTATTTTGTGTT
57.045
26.923
26.47
0.00
0.00
3.32
2700
2772
0.109735
GCCAAGTAGTTTTGCTCGGC
60.110
55.000
0.00
0.00
0.00
5.54
2832
2904
3.432186
CCTGATCTGCCATCCTTAACGAA
60.432
47.826
0.00
0.00
0.00
3.85
2843
2915
4.360951
TCCTTAACGAAACCACCAGAAT
57.639
40.909
0.00
0.00
0.00
2.40
2844
2916
4.721132
TCCTTAACGAAACCACCAGAATT
58.279
39.130
0.00
0.00
0.00
2.17
2845
2917
5.134661
TCCTTAACGAAACCACCAGAATTT
58.865
37.500
0.00
0.00
0.00
1.82
2846
2918
5.595133
TCCTTAACGAAACCACCAGAATTTT
59.405
36.000
0.00
0.00
0.00
1.82
2847
2919
6.097129
TCCTTAACGAAACCACCAGAATTTTT
59.903
34.615
0.00
0.00
0.00
1.94
2880
2954
4.202567
ACCACTATGCTTTTCCTTTCCTCA
60.203
41.667
0.00
0.00
0.00
3.86
2883
2957
5.416952
CACTATGCTTTTCCTTTCCTCATGT
59.583
40.000
0.00
0.00
0.00
3.21
3075
3153
0.674581
CTTGATGCCTCAGAACGCCA
60.675
55.000
0.00
0.00
31.68
5.69
3078
3156
1.202568
TGATGCCTCAGAACGCCATAG
60.203
52.381
0.00
0.00
0.00
2.23
3092
3170
4.096681
ACGCCATAGATGAGATGGGATTA
58.903
43.478
3.95
0.00
43.60
1.75
3134
3212
6.702329
TGTGACCTTGGTTGTGTAAATTTTT
58.298
32.000
0.00
0.00
0.00
1.94
3354
3432
1.687612
CACCATCCAACCAGAGGCT
59.312
57.895
0.00
0.00
0.00
4.58
3428
3506
6.875726
TGATGAATTTTGACGAGATCTTGAGT
59.124
34.615
17.27
7.99
0.00
3.41
3433
3511
3.203161
TGACGAGATCTTGAGTGTTCG
57.797
47.619
17.27
6.09
0.00
3.95
3583
3661
6.796705
ACCTAGCAAGTATTTTGTACACAC
57.203
37.500
0.00
0.00
0.00
3.82
3624
3702
4.762251
AGGAGTTTTCCAGTTGAACATAGC
59.238
41.667
0.00
0.00
46.64
2.97
3694
3772
4.451096
CACTTGAACAACTAGGCACGTAAT
59.549
41.667
0.00
0.00
0.00
1.89
3695
3773
4.451096
ACTTGAACAACTAGGCACGTAATG
59.549
41.667
0.00
0.00
0.00
1.90
3734
3812
8.417106
TCAATCCTCACTATGATGTTTAGAGAC
58.583
37.037
0.00
0.00
0.00
3.36
3794
3872
3.131326
CACTTCCCGTGTCGCATTA
57.869
52.632
0.00
0.00
38.84
1.90
3808
3888
4.865365
TGTCGCATTATCGTAAATGTGTGA
59.135
37.500
18.57
10.51
44.18
3.58
3855
4672
0.753479
TGCAACAATGGACCCAACGT
60.753
50.000
0.00
0.00
0.00
3.99
3879
4697
1.656652
GTCAACTCGTCATGGATGGG
58.343
55.000
0.00
0.00
0.00
4.00
4130
5167
4.514816
TGCGATTGAGATTCAGTTTCACAA
59.485
37.500
0.00
0.00
0.00
3.33
4131
5168
5.084722
GCGATTGAGATTCAGTTTCACAAG
58.915
41.667
0.00
0.00
29.37
3.16
4133
5170
6.662616
CGATTGAGATTCAGTTTCACAAGTT
58.337
36.000
0.00
0.00
29.37
2.66
4134
5171
7.571244
GCGATTGAGATTCAGTTTCACAAGTTA
60.571
37.037
0.00
0.00
29.37
2.24
4135
5172
7.742089
CGATTGAGATTCAGTTTCACAAGTTAC
59.258
37.037
0.00
0.00
29.37
2.50
4136
5173
8.682936
ATTGAGATTCAGTTTCACAAGTTACT
57.317
30.769
0.00
0.00
29.37
2.24
4137
5174
9.778741
ATTGAGATTCAGTTTCACAAGTTACTA
57.221
29.630
0.00
0.00
29.37
1.82
4138
5175
8.589335
TGAGATTCAGTTTCACAAGTTACTAC
57.411
34.615
0.00
0.00
0.00
2.73
4139
5176
8.421784
TGAGATTCAGTTTCACAAGTTACTACT
58.578
33.333
0.00
0.00
35.68
2.57
4140
5177
9.909644
GAGATTCAGTTTCACAAGTTACTACTA
57.090
33.333
0.00
0.00
33.17
1.82
4158
5200
9.632638
TTACTACTATTACAGAATACTCGGGTT
57.367
33.333
0.00
0.00
0.00
4.11
4171
5213
2.104792
ACTCGGGTTGTCATATGATGGG
59.895
50.000
9.02
0.00
0.00
4.00
4213
5256
7.173907
GCTACATAACCATGATGAGCAAACTAT
59.826
37.037
0.00
0.00
36.64
2.12
4247
5290
0.237498
GCCTGCTGTTAAACCGTCAC
59.763
55.000
0.00
0.00
0.00
3.67
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
9
10
0.907486
TCATGGGCTCCTCTTCACAG
59.093
55.000
0.00
0.00
0.00
3.66
11
12
2.725221
ATTCATGGGCTCCTCTTCAC
57.275
50.000
0.00
0.00
0.00
3.18
60
82
5.809719
GTGAATTCACAGGATCTTCTTCC
57.190
43.478
29.43
0.77
45.75
3.46
73
95
7.435305
GGAGGGAGTACTAATAGTGAATTCAC
58.565
42.308
27.69
27.69
46.77
3.18
169
191
4.533311
TCCCTCCGTTCCTTATTAGTTGTT
59.467
41.667
0.00
0.00
0.00
2.83
180
202
2.547990
ACAATTACTCCCTCCGTTCCT
58.452
47.619
0.00
0.00
0.00
3.36
220
245
4.689612
TGATACTTATCAGGTTGGGCTC
57.310
45.455
0.00
0.00
37.76
4.70
221
246
5.450818
TTTGATACTTATCAGGTTGGGCT
57.549
39.130
0.00
0.00
42.99
5.19
222
247
5.594317
ACATTTGATACTTATCAGGTTGGGC
59.406
40.000
0.00
0.00
42.99
5.36
299
324
9.554724
CGCTCAATTATGTGTTTTTAGTAACAT
57.445
29.630
0.00
0.00
39.93
2.71
498
532
6.482308
TCAACTTTGCTAGAACTTGGACTTAC
59.518
38.462
0.00
0.00
0.00
2.34
596
630
1.681264
ACTTGTGCAACTTGCTTACCC
59.319
47.619
14.78
0.00
45.31
3.69
617
651
3.273618
TGGGTGGGAATATAAAAAGGCCT
59.726
43.478
0.00
0.00
0.00
5.19
765
799
8.768501
ACAGAGATATTACAGGTAACATCAGA
57.231
34.615
11.71
0.00
32.83
3.27
800
834
9.791801
TGTCAATGGCTCTATGCTAAAATAATA
57.208
29.630
0.00
0.00
42.39
0.98
801
835
8.571336
GTGTCAATGGCTCTATGCTAAAATAAT
58.429
33.333
0.00
0.00
42.39
1.28
802
836
7.555914
TGTGTCAATGGCTCTATGCTAAAATAA
59.444
33.333
0.00
0.00
42.39
1.40
803
837
7.053498
TGTGTCAATGGCTCTATGCTAAAATA
58.947
34.615
0.00
0.00
42.39
1.40
804
838
5.887598
TGTGTCAATGGCTCTATGCTAAAAT
59.112
36.000
0.00
0.00
42.39
1.82
805
839
5.252547
TGTGTCAATGGCTCTATGCTAAAA
58.747
37.500
0.00
0.00
42.39
1.52
828
872
5.257082
AGTTTACAATTTTGGCGTCACTT
57.743
34.783
0.00
0.00
0.00
3.16
914
959
6.483307
ACATGATACATAATTGGTCCAAGACG
59.517
38.462
10.72
1.36
32.65
4.18
976
1021
4.440802
CGTTTCCACCAACTCCAAAAATGA
60.441
41.667
0.00
0.00
0.00
2.57
999
1048
2.677337
GCAAGTCAAGAGGCTTCTCATC
59.323
50.000
0.00
0.00
39.91
2.92
1238
1287
3.879295
TCAACTCTGCAACAGAAAGAAGG
59.121
43.478
0.00
0.00
40.18
3.46
1242
1291
3.065786
TGCTTCAACTCTGCAACAGAAAG
59.934
43.478
0.00
1.32
40.18
2.62
1244
1293
2.642427
TGCTTCAACTCTGCAACAGAA
58.358
42.857
0.00
0.00
40.18
3.02
1418
1469
8.349983
ACAAAAATCACCTGTATTTCAGTGTAC
58.650
33.333
0.00
0.00
42.19
2.90
1455
1506
0.038892
TGAACGAACTCGGGTGCTAC
60.039
55.000
3.88
0.00
44.95
3.58
1544
1595
3.118629
TCCAGATCATCTGTTGGTGCTAC
60.119
47.826
13.82
0.00
42.80
3.58
2073
2124
3.445805
TGCAGACGGATGATACACACTTA
59.554
43.478
0.00
0.00
0.00
2.24
2119
2170
6.349860
CCCTGCAATCCACATATCAACATATG
60.350
42.308
0.00
0.00
45.37
1.78
2120
2171
5.713389
CCCTGCAATCCACATATCAACATAT
59.287
40.000
0.00
0.00
0.00
1.78
2238
2289
0.883833
CCGCTGCATCAAAGTTCCTT
59.116
50.000
0.00
0.00
0.00
3.36
2367
2432
4.326504
AAGAGGAACACCAAATGCAAAG
57.673
40.909
0.00
0.00
0.00
2.77
2373
2438
7.944554
TGAAGAAATCTAAGAGGAACACCAAAT
59.055
33.333
0.00
0.00
0.00
2.32
2414
2479
7.219484
ACTACAGCACAAATTTAAAGATGCT
57.781
32.000
10.73
10.73
43.96
3.79
2514
2585
4.885907
AGATGCCCTTATGTCACATCAAAG
59.114
41.667
0.00
0.00
39.64
2.77
2655
2727
6.040278
TGCACAGATGATAAAAGGAAACACAA
59.960
34.615
0.00
0.00
0.00
3.33
2661
2733
3.696051
GGCTGCACAGATGATAAAAGGAA
59.304
43.478
0.50
0.00
0.00
3.36
2674
2746
2.859806
GCAAAACTACTTGGCTGCACAG
60.860
50.000
0.50
0.00
0.00
3.66
2700
2772
8.523658
TCCAGTGATATCCTATAATTCAAGTCG
58.476
37.037
0.00
0.00
0.00
4.18
2846
2918
8.736244
GGAAAAGCATAGTGGTATTCAGTAAAA
58.264
33.333
0.00
0.00
35.17
1.52
2847
2919
8.107095
AGGAAAAGCATAGTGGTATTCAGTAAA
58.893
33.333
0.00
0.00
35.17
2.01
2880
2954
4.098654
AGACACTAGCTGCGATAGAAACAT
59.901
41.667
0.00
0.00
39.76
2.71
2883
2957
3.694566
TCAGACACTAGCTGCGATAGAAA
59.305
43.478
0.00
0.00
33.45
2.52
3092
3170
5.888161
GGTCACATTAATTTGTCCCTGAGAT
59.112
40.000
6.61
0.00
0.00
2.75
3134
3212
1.960763
GCGATCACACCTGCACACA
60.961
57.895
0.00
0.00
0.00
3.72
3236
3314
1.212751
GCACTCGGCAATGAAACCC
59.787
57.895
0.00
0.00
43.97
4.11
3354
3432
4.556233
CATATTTTAGATCGGACGGCAGA
58.444
43.478
0.00
0.00
0.00
4.26
3433
3511
1.841663
ATTGCGCACTGGTCGTCAAC
61.842
55.000
11.12
0.00
0.00
3.18
3447
3525
4.113354
GACTAGTCTACTTCCCAATTGCG
58.887
47.826
15.91
0.00
0.00
4.85
3539
3617
7.563724
AGGTAAAATACTCCCTCTGTAAACA
57.436
36.000
0.00
0.00
0.00
2.83
3540
3618
7.710044
GCTAGGTAAAATACTCCCTCTGTAAAC
59.290
40.741
0.00
0.00
0.00
2.01
3556
3634
9.339850
TGTGTACAAAATACTTGCTAGGTAAAA
57.660
29.630
0.00
0.00
0.00
1.52
3624
3702
2.376808
AGAGCTGAAACATCAGACCG
57.623
50.000
9.89
0.00
39.99
4.79
3694
3772
1.547675
GGATTGACAGGAAAGGCACCA
60.548
52.381
0.00
0.00
0.00
4.17
3695
3773
1.177401
GGATTGACAGGAAAGGCACC
58.823
55.000
0.00
0.00
0.00
5.01
3734
3812
2.262211
TCGTGTTTGAGATCAGCATCG
58.738
47.619
0.00
0.00
33.75
3.84
3794
3872
2.158841
GCAACGGTCACACATTTACGAT
59.841
45.455
0.00
0.00
0.00
3.73
3808
3888
2.433436
GGATCTACCTTTTGCAACGGT
58.567
47.619
20.00
20.00
35.41
4.83
3855
4672
1.338655
TCCATGACGAGTTGACGACAA
59.661
47.619
0.00
0.00
40.43
3.18
3879
4697
3.321968
ACCTTGCTTTTGAATGTTCTCCC
59.678
43.478
0.00
0.00
0.00
4.30
4065
5102
1.950909
TCCGTTGTCGCAAGGAAAATT
59.049
42.857
11.91
0.00
38.47
1.82
4066
5103
1.600023
TCCGTTGTCGCAAGGAAAAT
58.400
45.000
11.91
0.00
38.47
1.82
4130
5167
9.282569
CCCGAGTATTCTGTAATAGTAGTAACT
57.717
37.037
0.00
0.00
39.91
2.24
4131
5168
9.061435
ACCCGAGTATTCTGTAATAGTAGTAAC
57.939
37.037
0.00
0.00
32.44
2.50
4133
5170
9.060347
CAACCCGAGTATTCTGTAATAGTAGTA
57.940
37.037
0.00
0.00
32.44
1.82
4134
5171
7.559170
ACAACCCGAGTATTCTGTAATAGTAGT
59.441
37.037
0.00
0.00
32.44
2.73
4135
5172
7.938715
ACAACCCGAGTATTCTGTAATAGTAG
58.061
38.462
0.00
0.00
32.44
2.57
4136
5173
7.557358
TGACAACCCGAGTATTCTGTAATAGTA
59.443
37.037
0.00
0.00
32.44
1.82
4137
5174
6.379133
TGACAACCCGAGTATTCTGTAATAGT
59.621
38.462
0.00
0.00
34.54
2.12
4138
5175
6.802608
TGACAACCCGAGTATTCTGTAATAG
58.197
40.000
0.00
0.00
0.00
1.73
4139
5176
6.778834
TGACAACCCGAGTATTCTGTAATA
57.221
37.500
0.00
0.00
0.00
0.98
4140
5177
5.670792
TGACAACCCGAGTATTCTGTAAT
57.329
39.130
0.00
0.00
0.00
1.89
4141
5178
5.670792
ATGACAACCCGAGTATTCTGTAA
57.329
39.130
0.00
0.00
0.00
2.41
4142
5179
6.548251
TCATATGACAACCCGAGTATTCTGTA
59.452
38.462
0.00
0.00
0.00
2.74
4144
5181
5.842907
TCATATGACAACCCGAGTATTCTG
58.157
41.667
0.00
0.00
0.00
3.02
4158
5200
2.126057
TCCTGTGCCCATCATATGACA
58.874
47.619
7.78
0.00
0.00
3.58
4195
5237
8.579850
TTTTCTTATAGTTTGCTCATCATGGT
57.420
30.769
0.00
0.00
0.00
3.55
4198
5240
9.525409
GCAATTTTCTTATAGTTTGCTCATCAT
57.475
29.630
0.00
0.00
37.18
2.45
4199
5241
8.522003
TGCAATTTTCTTATAGTTTGCTCATCA
58.478
29.630
6.94
0.00
39.98
3.07
4200
5242
8.801913
GTGCAATTTTCTTATAGTTTGCTCATC
58.198
33.333
6.94
0.00
39.98
2.92
4201
5243
7.485913
CGTGCAATTTTCTTATAGTTTGCTCAT
59.514
33.333
6.94
0.00
39.98
2.90
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.