Multiple sequence alignment - TraesCS5A01G202800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G202800 chr5A 100.000 4303 0 0 1 4303 410505047 410500745 0.000000e+00 7947.0
1 TraesCS5A01G202800 chr5B 95.098 3937 133 20 8 3916 364132854 364128950 0.000000e+00 6146.0
2 TraesCS5A01G202800 chr5B 84.010 394 30 17 3912 4293 364128743 364128371 8.860000e-92 348.0
3 TraesCS5A01G202800 chr5B 89.062 64 7 0 28 91 364132882 364132819 3.570000e-11 80.5
4 TraesCS5A01G202800 chr5B 100.000 34 0 0 194 227 364132869 364132836 3.590000e-06 63.9
5 TraesCS5A01G202800 chr5B 97.222 36 1 0 8 43 364132806 364132771 1.290000e-05 62.1
6 TraesCS5A01G202800 chr5D 95.157 3861 141 20 28 3855 315929144 315925297 0.000000e+00 6052.0
7 TraesCS5A01G202800 chr5D 93.843 471 16 8 3840 4303 315924576 315924112 0.000000e+00 697.0
8 TraesCS5A01G202800 chr5D 96.460 113 4 0 84 196 282007006 282007118 2.040000e-43 187.0
9 TraesCS5A01G202800 chr5D 97.436 39 1 0 29 67 315929180 315929142 2.780000e-07 67.6
10 TraesCS5A01G202800 chr5D 100.000 34 0 0 194 227 315929131 315929098 3.590000e-06 63.9
11 TraesCS5A01G202800 chr5D 100.000 31 0 0 8 38 315929116 315929086 1.670000e-04 58.4
12 TraesCS5A01G202800 chr3D 99.074 108 1 0 89 196 463716864 463716971 1.220000e-45 195.0
13 TraesCS5A01G202800 chr6A 98.131 107 2 0 90 196 222555005 222554899 2.040000e-43 187.0
14 TraesCS5A01G202800 chr6A 95.000 40 0 2 3521 3559 608859311 608859349 1.290000e-05 62.1
15 TraesCS5A01G202800 chr3B 98.131 107 2 0 90 196 505264572 505264678 2.040000e-43 187.0
16 TraesCS5A01G202800 chr2D 95.652 115 5 0 84 198 473292193 473292307 7.350000e-43 185.0
17 TraesCS5A01G202800 chr2D 94.068 118 5 2 81 196 625519539 625519656 1.230000e-40 178.0
18 TraesCS5A01G202800 chr7D 93.443 122 6 2 84 204 600224509 600224629 3.420000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G202800 chr5A 410500745 410505047 4302 True 7947.00 7947 100.0000 1 4303 1 chr5A.!!$R1 4302
1 TraesCS5A01G202800 chr5B 364128371 364132882 4511 True 1340.10 6146 93.0784 8 4293 5 chr5B.!!$R1 4285
2 TraesCS5A01G202800 chr5D 315924112 315929180 5068 True 1387.78 6052 97.2872 8 4303 5 chr5D.!!$R1 4295


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 94 2.589664 TCTCCTCTGGGAAGAAGATCCT 59.410 50.000 0.00 0.00 41.69 3.24 F
73 95 2.699846 CTCCTCTGGGAAGAAGATCCTG 59.300 54.545 0.00 0.00 41.69 3.86 F
844 888 2.788786 GACACAAGTGACGCCAAAATTG 59.211 45.455 7.28 0.00 0.00 2.32 F
2120 2171 0.251253 TCATGACTGTTGGCCATGCA 60.251 50.000 6.09 8.44 37.99 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1455 1506 0.038892 TGAACGAACTCGGGTGCTAC 60.039 55.000 3.88 0.0 44.95 3.58 R
1544 1595 3.118629 TCCAGATCATCTGTTGGTGCTAC 60.119 47.826 13.82 0.0 42.80 3.58 R
2238 2289 0.883833 CCGCTGCATCAAAGTTCCTT 59.116 50.000 0.00 0.0 0.00 3.36 R
3695 3773 1.177401 GGATTGACAGGAAAGGCACC 58.823 55.000 0.00 0.0 0.00 5.01 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 82 6.648879 TTGGTAATTGTTTTTCTCCTCTGG 57.351 37.500 0.00 0.00 0.00 3.86
66 88 4.788925 TGTTTTTCTCCTCTGGGAAGAA 57.211 40.909 0.00 0.00 41.69 2.52
69 91 5.073691 TGTTTTTCTCCTCTGGGAAGAAGAT 59.926 40.000 0.00 0.00 41.69 2.40
72 94 2.589664 TCTCCTCTGGGAAGAAGATCCT 59.410 50.000 0.00 0.00 41.69 3.24
73 95 2.699846 CTCCTCTGGGAAGAAGATCCTG 59.300 54.545 0.00 0.00 41.69 3.86
169 191 3.132111 TGCTAGATACATCCGTTTGAGCA 59.868 43.478 0.00 0.00 35.18 4.26
180 202 6.205853 ACATCCGTTTGAGCAACAACTAATAA 59.794 34.615 0.00 0.00 38.29 1.40
327 352 6.254281 ACTAAAAACACATAATTGAGCGCT 57.746 33.333 11.27 11.27 0.00 5.92
344 369 8.662781 TTGAGCGCTTTAACTCTAATATGATT 57.337 30.769 13.26 0.00 33.92 2.57
498 532 7.379098 TCAGATAGTGGAATAGCTACATACG 57.621 40.000 0.00 0.00 0.00 3.06
617 651 6.444002 ATTGGGTAAGCAAGTTGCACAAGTA 61.444 40.000 28.65 10.21 45.95 2.24
844 888 2.788786 GACACAAGTGACGCCAAAATTG 59.211 45.455 7.28 0.00 0.00 2.32
914 959 6.803154 ATTGGTCTACAGAAAGCTTAACAC 57.197 37.500 0.00 0.00 0.00 3.32
967 1012 8.770438 ACATTTTAAGTTTTGCACAAAAGAGA 57.230 26.923 8.73 0.00 40.53 3.10
968 1013 9.213799 ACATTTTAAGTTTTGCACAAAAGAGAA 57.786 25.926 8.73 1.52 40.53 2.87
999 1048 3.512033 TTTTTGGAGTTGGTGGAAACG 57.488 42.857 0.00 0.00 35.13 3.60
1238 1287 4.142687 ACATGCATTTGTAACTACGCCTTC 60.143 41.667 0.00 0.00 0.00 3.46
1242 1291 4.436986 GCATTTGTAACTACGCCTTCCTTC 60.437 45.833 0.00 0.00 0.00 3.46
1244 1293 4.612264 TTGTAACTACGCCTTCCTTCTT 57.388 40.909 0.00 0.00 0.00 2.52
1267 1318 4.582869 TCTGTTGCAGAGTTGAAGCATAT 58.417 39.130 0.00 0.00 35.39 1.78
1268 1319 5.733676 TCTGTTGCAGAGTTGAAGCATATA 58.266 37.500 0.00 0.00 35.39 0.86
1270 1321 6.092670 TCTGTTGCAGAGTTGAAGCATATAAC 59.907 38.462 0.00 0.00 35.39 1.89
1271 1322 5.704978 TGTTGCAGAGTTGAAGCATATAACA 59.295 36.000 0.00 0.00 38.19 2.41
1272 1323 6.375174 TGTTGCAGAGTTGAAGCATATAACAT 59.625 34.615 0.00 0.00 38.19 2.71
1273 1324 7.552330 TGTTGCAGAGTTGAAGCATATAACATA 59.448 33.333 0.00 0.00 38.19 2.29
1455 1506 5.064707 CAGGTGATTTTTGTGGTATACCTCG 59.935 44.000 22.41 0.00 35.25 4.63
1544 1595 4.402056 AGTACTTGGAATATCGGTGGTG 57.598 45.455 0.00 0.00 0.00 4.17
1838 1889 4.733405 GCACTAAACAAAAAGAAGACACGG 59.267 41.667 0.00 0.00 0.00 4.94
2059 2110 2.034558 ACAAGGTACACATTGCTTGCAC 59.965 45.455 6.66 0.00 40.89 4.57
2073 2124 7.067859 ACATTGCTTGCACTCATGAGTATTAAT 59.932 33.333 27.44 17.40 40.20 1.40
2119 2170 0.454600 CTCATGACTGTTGGCCATGC 59.545 55.000 6.09 3.07 37.99 4.06
2120 2171 0.251253 TCATGACTGTTGGCCATGCA 60.251 50.000 6.09 8.44 37.99 3.96
2238 2289 0.698238 AACAAGGGGATGTGCTGCTA 59.302 50.000 0.00 0.00 32.81 3.49
2344 2403 4.491676 TCACGAGTAAGTTTACAGCATCC 58.508 43.478 4.97 0.00 36.12 3.51
2367 2432 2.930040 CACCTCATGTGTTCGTATGTCC 59.070 50.000 0.00 0.00 40.26 4.02
2373 2438 2.839975 TGTGTTCGTATGTCCTTTGCA 58.160 42.857 0.00 0.00 0.00 4.08
2414 2479 2.956132 TCTTCAACAGGCAATCCCAAA 58.044 42.857 0.00 0.00 35.39 3.28
2514 2585 7.917505 CCAATGATTGCATTCTTTAGTCCTTAC 59.082 37.037 9.81 0.00 42.66 2.34
2661 2733 8.954950 TTTGGTCATGACATTTATTTTGTGTT 57.045 26.923 26.47 0.00 0.00 3.32
2700 2772 0.109735 GCCAAGTAGTTTTGCTCGGC 60.110 55.000 0.00 0.00 0.00 5.54
2832 2904 3.432186 CCTGATCTGCCATCCTTAACGAA 60.432 47.826 0.00 0.00 0.00 3.85
2843 2915 4.360951 TCCTTAACGAAACCACCAGAAT 57.639 40.909 0.00 0.00 0.00 2.40
2844 2916 4.721132 TCCTTAACGAAACCACCAGAATT 58.279 39.130 0.00 0.00 0.00 2.17
2845 2917 5.134661 TCCTTAACGAAACCACCAGAATTT 58.865 37.500 0.00 0.00 0.00 1.82
2846 2918 5.595133 TCCTTAACGAAACCACCAGAATTTT 59.405 36.000 0.00 0.00 0.00 1.82
2847 2919 6.097129 TCCTTAACGAAACCACCAGAATTTTT 59.903 34.615 0.00 0.00 0.00 1.94
2880 2954 4.202567 ACCACTATGCTTTTCCTTTCCTCA 60.203 41.667 0.00 0.00 0.00 3.86
2883 2957 5.416952 CACTATGCTTTTCCTTTCCTCATGT 59.583 40.000 0.00 0.00 0.00 3.21
3075 3153 0.674581 CTTGATGCCTCAGAACGCCA 60.675 55.000 0.00 0.00 31.68 5.69
3078 3156 1.202568 TGATGCCTCAGAACGCCATAG 60.203 52.381 0.00 0.00 0.00 2.23
3092 3170 4.096681 ACGCCATAGATGAGATGGGATTA 58.903 43.478 3.95 0.00 43.60 1.75
3134 3212 6.702329 TGTGACCTTGGTTGTGTAAATTTTT 58.298 32.000 0.00 0.00 0.00 1.94
3354 3432 1.687612 CACCATCCAACCAGAGGCT 59.312 57.895 0.00 0.00 0.00 4.58
3428 3506 6.875726 TGATGAATTTTGACGAGATCTTGAGT 59.124 34.615 17.27 7.99 0.00 3.41
3433 3511 3.203161 TGACGAGATCTTGAGTGTTCG 57.797 47.619 17.27 6.09 0.00 3.95
3583 3661 6.796705 ACCTAGCAAGTATTTTGTACACAC 57.203 37.500 0.00 0.00 0.00 3.82
3624 3702 4.762251 AGGAGTTTTCCAGTTGAACATAGC 59.238 41.667 0.00 0.00 46.64 2.97
3694 3772 4.451096 CACTTGAACAACTAGGCACGTAAT 59.549 41.667 0.00 0.00 0.00 1.89
3695 3773 4.451096 ACTTGAACAACTAGGCACGTAATG 59.549 41.667 0.00 0.00 0.00 1.90
3734 3812 8.417106 TCAATCCTCACTATGATGTTTAGAGAC 58.583 37.037 0.00 0.00 0.00 3.36
3794 3872 3.131326 CACTTCCCGTGTCGCATTA 57.869 52.632 0.00 0.00 38.84 1.90
3808 3888 4.865365 TGTCGCATTATCGTAAATGTGTGA 59.135 37.500 18.57 10.51 44.18 3.58
3855 4672 0.753479 TGCAACAATGGACCCAACGT 60.753 50.000 0.00 0.00 0.00 3.99
3879 4697 1.656652 GTCAACTCGTCATGGATGGG 58.343 55.000 0.00 0.00 0.00 4.00
4130 5167 4.514816 TGCGATTGAGATTCAGTTTCACAA 59.485 37.500 0.00 0.00 0.00 3.33
4131 5168 5.084722 GCGATTGAGATTCAGTTTCACAAG 58.915 41.667 0.00 0.00 29.37 3.16
4133 5170 6.662616 CGATTGAGATTCAGTTTCACAAGTT 58.337 36.000 0.00 0.00 29.37 2.66
4134 5171 7.571244 GCGATTGAGATTCAGTTTCACAAGTTA 60.571 37.037 0.00 0.00 29.37 2.24
4135 5172 7.742089 CGATTGAGATTCAGTTTCACAAGTTAC 59.258 37.037 0.00 0.00 29.37 2.50
4136 5173 8.682936 ATTGAGATTCAGTTTCACAAGTTACT 57.317 30.769 0.00 0.00 29.37 2.24
4137 5174 9.778741 ATTGAGATTCAGTTTCACAAGTTACTA 57.221 29.630 0.00 0.00 29.37 1.82
4138 5175 8.589335 TGAGATTCAGTTTCACAAGTTACTAC 57.411 34.615 0.00 0.00 0.00 2.73
4139 5176 8.421784 TGAGATTCAGTTTCACAAGTTACTACT 58.578 33.333 0.00 0.00 35.68 2.57
4140 5177 9.909644 GAGATTCAGTTTCACAAGTTACTACTA 57.090 33.333 0.00 0.00 33.17 1.82
4158 5200 9.632638 TTACTACTATTACAGAATACTCGGGTT 57.367 33.333 0.00 0.00 0.00 4.11
4171 5213 2.104792 ACTCGGGTTGTCATATGATGGG 59.895 50.000 9.02 0.00 0.00 4.00
4213 5256 7.173907 GCTACATAACCATGATGAGCAAACTAT 59.826 37.037 0.00 0.00 36.64 2.12
4247 5290 0.237498 GCCTGCTGTTAAACCGTCAC 59.763 55.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.907486 TCATGGGCTCCTCTTCACAG 59.093 55.000 0.00 0.00 0.00 3.66
11 12 2.725221 ATTCATGGGCTCCTCTTCAC 57.275 50.000 0.00 0.00 0.00 3.18
60 82 5.809719 GTGAATTCACAGGATCTTCTTCC 57.190 43.478 29.43 0.77 45.75 3.46
73 95 7.435305 GGAGGGAGTACTAATAGTGAATTCAC 58.565 42.308 27.69 27.69 46.77 3.18
169 191 4.533311 TCCCTCCGTTCCTTATTAGTTGTT 59.467 41.667 0.00 0.00 0.00 2.83
180 202 2.547990 ACAATTACTCCCTCCGTTCCT 58.452 47.619 0.00 0.00 0.00 3.36
220 245 4.689612 TGATACTTATCAGGTTGGGCTC 57.310 45.455 0.00 0.00 37.76 4.70
221 246 5.450818 TTTGATACTTATCAGGTTGGGCT 57.549 39.130 0.00 0.00 42.99 5.19
222 247 5.594317 ACATTTGATACTTATCAGGTTGGGC 59.406 40.000 0.00 0.00 42.99 5.36
299 324 9.554724 CGCTCAATTATGTGTTTTTAGTAACAT 57.445 29.630 0.00 0.00 39.93 2.71
498 532 6.482308 TCAACTTTGCTAGAACTTGGACTTAC 59.518 38.462 0.00 0.00 0.00 2.34
596 630 1.681264 ACTTGTGCAACTTGCTTACCC 59.319 47.619 14.78 0.00 45.31 3.69
617 651 3.273618 TGGGTGGGAATATAAAAAGGCCT 59.726 43.478 0.00 0.00 0.00 5.19
765 799 8.768501 ACAGAGATATTACAGGTAACATCAGA 57.231 34.615 11.71 0.00 32.83 3.27
800 834 9.791801 TGTCAATGGCTCTATGCTAAAATAATA 57.208 29.630 0.00 0.00 42.39 0.98
801 835 8.571336 GTGTCAATGGCTCTATGCTAAAATAAT 58.429 33.333 0.00 0.00 42.39 1.28
802 836 7.555914 TGTGTCAATGGCTCTATGCTAAAATAA 59.444 33.333 0.00 0.00 42.39 1.40
803 837 7.053498 TGTGTCAATGGCTCTATGCTAAAATA 58.947 34.615 0.00 0.00 42.39 1.40
804 838 5.887598 TGTGTCAATGGCTCTATGCTAAAAT 59.112 36.000 0.00 0.00 42.39 1.82
805 839 5.252547 TGTGTCAATGGCTCTATGCTAAAA 58.747 37.500 0.00 0.00 42.39 1.52
828 872 5.257082 AGTTTACAATTTTGGCGTCACTT 57.743 34.783 0.00 0.00 0.00 3.16
914 959 6.483307 ACATGATACATAATTGGTCCAAGACG 59.517 38.462 10.72 1.36 32.65 4.18
976 1021 4.440802 CGTTTCCACCAACTCCAAAAATGA 60.441 41.667 0.00 0.00 0.00 2.57
999 1048 2.677337 GCAAGTCAAGAGGCTTCTCATC 59.323 50.000 0.00 0.00 39.91 2.92
1238 1287 3.879295 TCAACTCTGCAACAGAAAGAAGG 59.121 43.478 0.00 0.00 40.18 3.46
1242 1291 3.065786 TGCTTCAACTCTGCAACAGAAAG 59.934 43.478 0.00 1.32 40.18 2.62
1244 1293 2.642427 TGCTTCAACTCTGCAACAGAA 58.358 42.857 0.00 0.00 40.18 3.02
1418 1469 8.349983 ACAAAAATCACCTGTATTTCAGTGTAC 58.650 33.333 0.00 0.00 42.19 2.90
1455 1506 0.038892 TGAACGAACTCGGGTGCTAC 60.039 55.000 3.88 0.00 44.95 3.58
1544 1595 3.118629 TCCAGATCATCTGTTGGTGCTAC 60.119 47.826 13.82 0.00 42.80 3.58
2073 2124 3.445805 TGCAGACGGATGATACACACTTA 59.554 43.478 0.00 0.00 0.00 2.24
2119 2170 6.349860 CCCTGCAATCCACATATCAACATATG 60.350 42.308 0.00 0.00 45.37 1.78
2120 2171 5.713389 CCCTGCAATCCACATATCAACATAT 59.287 40.000 0.00 0.00 0.00 1.78
2238 2289 0.883833 CCGCTGCATCAAAGTTCCTT 59.116 50.000 0.00 0.00 0.00 3.36
2367 2432 4.326504 AAGAGGAACACCAAATGCAAAG 57.673 40.909 0.00 0.00 0.00 2.77
2373 2438 7.944554 TGAAGAAATCTAAGAGGAACACCAAAT 59.055 33.333 0.00 0.00 0.00 2.32
2414 2479 7.219484 ACTACAGCACAAATTTAAAGATGCT 57.781 32.000 10.73 10.73 43.96 3.79
2514 2585 4.885907 AGATGCCCTTATGTCACATCAAAG 59.114 41.667 0.00 0.00 39.64 2.77
2655 2727 6.040278 TGCACAGATGATAAAAGGAAACACAA 59.960 34.615 0.00 0.00 0.00 3.33
2661 2733 3.696051 GGCTGCACAGATGATAAAAGGAA 59.304 43.478 0.50 0.00 0.00 3.36
2674 2746 2.859806 GCAAAACTACTTGGCTGCACAG 60.860 50.000 0.50 0.00 0.00 3.66
2700 2772 8.523658 TCCAGTGATATCCTATAATTCAAGTCG 58.476 37.037 0.00 0.00 0.00 4.18
2846 2918 8.736244 GGAAAAGCATAGTGGTATTCAGTAAAA 58.264 33.333 0.00 0.00 35.17 1.52
2847 2919 8.107095 AGGAAAAGCATAGTGGTATTCAGTAAA 58.893 33.333 0.00 0.00 35.17 2.01
2880 2954 4.098654 AGACACTAGCTGCGATAGAAACAT 59.901 41.667 0.00 0.00 39.76 2.71
2883 2957 3.694566 TCAGACACTAGCTGCGATAGAAA 59.305 43.478 0.00 0.00 33.45 2.52
3092 3170 5.888161 GGTCACATTAATTTGTCCCTGAGAT 59.112 40.000 6.61 0.00 0.00 2.75
3134 3212 1.960763 GCGATCACACCTGCACACA 60.961 57.895 0.00 0.00 0.00 3.72
3236 3314 1.212751 GCACTCGGCAATGAAACCC 59.787 57.895 0.00 0.00 43.97 4.11
3354 3432 4.556233 CATATTTTAGATCGGACGGCAGA 58.444 43.478 0.00 0.00 0.00 4.26
3433 3511 1.841663 ATTGCGCACTGGTCGTCAAC 61.842 55.000 11.12 0.00 0.00 3.18
3447 3525 4.113354 GACTAGTCTACTTCCCAATTGCG 58.887 47.826 15.91 0.00 0.00 4.85
3539 3617 7.563724 AGGTAAAATACTCCCTCTGTAAACA 57.436 36.000 0.00 0.00 0.00 2.83
3540 3618 7.710044 GCTAGGTAAAATACTCCCTCTGTAAAC 59.290 40.741 0.00 0.00 0.00 2.01
3556 3634 9.339850 TGTGTACAAAATACTTGCTAGGTAAAA 57.660 29.630 0.00 0.00 0.00 1.52
3624 3702 2.376808 AGAGCTGAAACATCAGACCG 57.623 50.000 9.89 0.00 39.99 4.79
3694 3772 1.547675 GGATTGACAGGAAAGGCACCA 60.548 52.381 0.00 0.00 0.00 4.17
3695 3773 1.177401 GGATTGACAGGAAAGGCACC 58.823 55.000 0.00 0.00 0.00 5.01
3734 3812 2.262211 TCGTGTTTGAGATCAGCATCG 58.738 47.619 0.00 0.00 33.75 3.84
3794 3872 2.158841 GCAACGGTCACACATTTACGAT 59.841 45.455 0.00 0.00 0.00 3.73
3808 3888 2.433436 GGATCTACCTTTTGCAACGGT 58.567 47.619 20.00 20.00 35.41 4.83
3855 4672 1.338655 TCCATGACGAGTTGACGACAA 59.661 47.619 0.00 0.00 40.43 3.18
3879 4697 3.321968 ACCTTGCTTTTGAATGTTCTCCC 59.678 43.478 0.00 0.00 0.00 4.30
4065 5102 1.950909 TCCGTTGTCGCAAGGAAAATT 59.049 42.857 11.91 0.00 38.47 1.82
4066 5103 1.600023 TCCGTTGTCGCAAGGAAAAT 58.400 45.000 11.91 0.00 38.47 1.82
4130 5167 9.282569 CCCGAGTATTCTGTAATAGTAGTAACT 57.717 37.037 0.00 0.00 39.91 2.24
4131 5168 9.061435 ACCCGAGTATTCTGTAATAGTAGTAAC 57.939 37.037 0.00 0.00 32.44 2.50
4133 5170 9.060347 CAACCCGAGTATTCTGTAATAGTAGTA 57.940 37.037 0.00 0.00 32.44 1.82
4134 5171 7.559170 ACAACCCGAGTATTCTGTAATAGTAGT 59.441 37.037 0.00 0.00 32.44 2.73
4135 5172 7.938715 ACAACCCGAGTATTCTGTAATAGTAG 58.061 38.462 0.00 0.00 32.44 2.57
4136 5173 7.557358 TGACAACCCGAGTATTCTGTAATAGTA 59.443 37.037 0.00 0.00 32.44 1.82
4137 5174 6.379133 TGACAACCCGAGTATTCTGTAATAGT 59.621 38.462 0.00 0.00 34.54 2.12
4138 5175 6.802608 TGACAACCCGAGTATTCTGTAATAG 58.197 40.000 0.00 0.00 0.00 1.73
4139 5176 6.778834 TGACAACCCGAGTATTCTGTAATA 57.221 37.500 0.00 0.00 0.00 0.98
4140 5177 5.670792 TGACAACCCGAGTATTCTGTAAT 57.329 39.130 0.00 0.00 0.00 1.89
4141 5178 5.670792 ATGACAACCCGAGTATTCTGTAA 57.329 39.130 0.00 0.00 0.00 2.41
4142 5179 6.548251 TCATATGACAACCCGAGTATTCTGTA 59.452 38.462 0.00 0.00 0.00 2.74
4144 5181 5.842907 TCATATGACAACCCGAGTATTCTG 58.157 41.667 0.00 0.00 0.00 3.02
4158 5200 2.126057 TCCTGTGCCCATCATATGACA 58.874 47.619 7.78 0.00 0.00 3.58
4195 5237 8.579850 TTTTCTTATAGTTTGCTCATCATGGT 57.420 30.769 0.00 0.00 0.00 3.55
4198 5240 9.525409 GCAATTTTCTTATAGTTTGCTCATCAT 57.475 29.630 0.00 0.00 37.18 2.45
4199 5241 8.522003 TGCAATTTTCTTATAGTTTGCTCATCA 58.478 29.630 6.94 0.00 39.98 3.07
4200 5242 8.801913 GTGCAATTTTCTTATAGTTTGCTCATC 58.198 33.333 6.94 0.00 39.98 2.92
4201 5243 7.485913 CGTGCAATTTTCTTATAGTTTGCTCAT 59.514 33.333 6.94 0.00 39.98 2.90



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.