Multiple sequence alignment - TraesCS5A01G202200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G202200 chr5A 100.000 5245 0 0 1 5245 408927527 408932771 0.000000e+00 9686.0
1 TraesCS5A01G202200 chr5A 89.773 88 9 0 631 718 251054563 251054650 4.290000e-21 113.0
2 TraesCS5A01G202200 chr5D 97.414 2552 57 6 1908 4453 314899973 314902521 0.000000e+00 4338.0
3 TraesCS5A01G202200 chr5D 95.303 958 31 6 854 1801 314899018 314899971 0.000000e+00 1507.0
4 TraesCS5A01G202200 chr5D 92.661 109 8 0 1801 1909 501822823 501822715 1.960000e-34 158.0
5 TraesCS5A01G202200 chr5D 92.661 109 8 0 1801 1909 501862528 501862420 1.960000e-34 158.0
6 TraesCS5A01G202200 chr5D 79.592 245 25 17 4445 4681 314903301 314903528 9.100000e-33 152.0
7 TraesCS5A01G202200 chr5B 94.322 1814 82 9 2880 4681 362955801 362957605 0.000000e+00 2760.0
8 TraesCS5A01G202200 chr5B 91.996 912 53 11 1963 2871 362947401 362948295 0.000000e+00 1262.0
9 TraesCS5A01G202200 chr5B 93.537 557 17 9 856 1402 362946393 362946940 0.000000e+00 811.0
10 TraesCS5A01G202200 chr5B 83.255 424 45 9 127 540 362945719 362946126 2.980000e-97 366.0
11 TraesCS5A01G202200 chr5B 92.793 111 7 1 1802 1912 511610849 511610740 5.440000e-35 159.0
12 TraesCS5A01G202200 chr5B 91.743 109 9 0 1801 1909 629852115 629852007 9.100000e-33 152.0
13 TraesCS5A01G202200 chr5B 90.826 109 10 0 1801 1909 626784118 626784010 4.230000e-31 147.0
14 TraesCS5A01G202200 chr5B 97.872 47 1 0 1 47 360538784 360538830 1.210000e-11 82.4
15 TraesCS5A01G202200 chr5B 97.872 47 0 1 1 47 340305912 340305957 4.350000e-11 80.5
16 TraesCS5A01G202200 chr1A 88.889 567 45 12 4683 5245 444170228 444170780 0.000000e+00 682.0
17 TraesCS5A01G202200 chr1A 89.162 489 36 9 4761 5245 575546777 575547252 1.260000e-165 593.0
18 TraesCS5A01G202200 chr1A 90.909 319 24 4 4702 5017 94862562 94862246 1.750000e-114 424.0
19 TraesCS5A01G202200 chr6D 88.949 552 43 12 4698 5245 57464450 57463913 0.000000e+00 665.0
20 TraesCS5A01G202200 chr6D 81.416 113 20 1 631 743 177029158 177029047 2.010000e-14 91.6
21 TraesCS5A01G202200 chr4A 89.091 550 41 12 4698 5242 654185922 654185387 0.000000e+00 665.0
22 TraesCS5A01G202200 chr4A 88.889 549 43 10 4698 5242 654156491 654155957 0.000000e+00 660.0
23 TraesCS5A01G202200 chr6B 88.288 555 43 13 4697 5245 113761845 113762383 0.000000e+00 645.0
24 TraesCS5A01G202200 chr6B 85.118 551 48 8 4698 5245 556771394 556770875 2.780000e-147 532.0
25 TraesCS5A01G202200 chr3A 88.321 548 49 11 4701 5245 698289216 698288681 1.230000e-180 643.0
26 TraesCS5A01G202200 chr3A 88.710 62 6 1 1 62 272914480 272914420 2.030000e-09 75.0
27 TraesCS5A01G202200 chr2D 86.903 565 45 16 4698 5245 9929120 9928568 1.620000e-169 606.0
28 TraesCS5A01G202200 chr2D 78.161 174 25 11 635 802 639094429 639094595 1.200000e-16 99.0
29 TraesCS5A01G202200 chr1D 90.129 466 29 7 4784 5245 112796207 112795755 1.630000e-164 590.0
30 TraesCS5A01G202200 chr1D 89.097 321 23 9 4698 5011 364834503 364834818 6.370000e-104 388.0
31 TraesCS5A01G202200 chr7B 86.799 553 38 15 4698 5245 654940800 654940278 7.570000e-163 584.0
32 TraesCS5A01G202200 chr3B 86.170 564 50 16 4698 5245 60737939 60738490 7.570000e-163 584.0
33 TraesCS5A01G202200 chr3B 88.136 118 11 1 1801 1915 199701764 199701647 2.550000e-28 137.0
34 TraesCS5A01G202200 chr3B 95.918 49 1 1 1 49 144509087 144509040 1.570000e-10 78.7
35 TraesCS5A01G202200 chr3B 94.231 52 2 1 1 52 493328899 493328949 1.570000e-10 78.7
36 TraesCS5A01G202200 chr3B 91.228 57 3 2 1 56 477030129 477030184 5.630000e-10 76.8
37 TraesCS5A01G202200 chr3D 88.296 487 41 12 4694 5176 550375700 550375226 2.120000e-158 569.0
38 TraesCS5A01G202200 chr3D 87.195 164 21 0 631 794 337495887 337495724 2.490000e-43 187.0
39 TraesCS5A01G202200 chr3D 78.431 204 32 8 631 828 332392974 332393171 7.130000e-24 122.0
40 TraesCS5A01G202200 chr7A 84.393 173 27 0 631 803 443700621 443700793 2.510000e-38 171.0
41 TraesCS5A01G202200 chr2A 91.597 119 10 0 631 749 507890463 507890345 1.170000e-36 165.0
42 TraesCS5A01G202200 chr2A 78.922 204 31 8 631 828 657277623 657277426 1.530000e-25 128.0
43 TraesCS5A01G202200 chr6A 92.857 112 8 0 1801 1912 17663800 17663911 4.200000e-36 163.0
44 TraesCS5A01G202200 chr6A 90.741 108 10 0 1801 1908 246402048 246402155 1.520000e-30 145.0
45 TraesCS5A01G202200 chr7D 91.667 108 9 0 1801 1908 448052209 448052316 3.270000e-32 150.0
46 TraesCS5A01G202200 chr2B 96.296 54 0 2 1 54 157656160 157656109 2.600000e-13 87.9
47 TraesCS5A01G202200 chr2B 97.872 47 0 1 1 47 503515445 503515490 4.350000e-11 80.5
48 TraesCS5A01G202200 chr4D 82.955 88 14 1 656 743 272179243 272179329 1.570000e-10 78.7
49 TraesCS5A01G202200 chr1B 91.071 56 5 0 1 56 174731779 174731724 5.630000e-10 76.8
50 TraesCS5A01G202200 chr4B 97.143 35 1 0 4454 4488 179752334 179752300 5.670000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G202200 chr5A 408927527 408932771 5244 False 9686 9686 100.000000 1 5245 1 chr5A.!!$F2 5244
1 TraesCS5A01G202200 chr5D 314899018 314903528 4510 False 1999 4338 90.769667 854 4681 3 chr5D.!!$F1 3827
2 TraesCS5A01G202200 chr5B 362955801 362957605 1804 False 2760 2760 94.322000 2880 4681 1 chr5B.!!$F3 1801
3 TraesCS5A01G202200 chr5B 362945719 362948295 2576 False 813 1262 89.596000 127 2871 3 chr5B.!!$F4 2744
4 TraesCS5A01G202200 chr1A 444170228 444170780 552 False 682 682 88.889000 4683 5245 1 chr1A.!!$F1 562
5 TraesCS5A01G202200 chr6D 57463913 57464450 537 True 665 665 88.949000 4698 5245 1 chr6D.!!$R1 547
6 TraesCS5A01G202200 chr4A 654185387 654185922 535 True 665 665 89.091000 4698 5242 1 chr4A.!!$R2 544
7 TraesCS5A01G202200 chr4A 654155957 654156491 534 True 660 660 88.889000 4698 5242 1 chr4A.!!$R1 544
8 TraesCS5A01G202200 chr6B 113761845 113762383 538 False 645 645 88.288000 4697 5245 1 chr6B.!!$F1 548
9 TraesCS5A01G202200 chr6B 556770875 556771394 519 True 532 532 85.118000 4698 5245 1 chr6B.!!$R1 547
10 TraesCS5A01G202200 chr3A 698288681 698289216 535 True 643 643 88.321000 4701 5245 1 chr3A.!!$R2 544
11 TraesCS5A01G202200 chr2D 9928568 9929120 552 True 606 606 86.903000 4698 5245 1 chr2D.!!$R1 547
12 TraesCS5A01G202200 chr7B 654940278 654940800 522 True 584 584 86.799000 4698 5245 1 chr7B.!!$R1 547
13 TraesCS5A01G202200 chr3B 60737939 60738490 551 False 584 584 86.170000 4698 5245 1 chr3B.!!$F1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 682 0.103208 CCACTGATCGGTACTCTGGC 59.897 60.0 6.92 0.0 0.00 4.85 F
1816 2079 0.106167 CTGATACTCCCTCCGTCCCA 60.106 60.0 0.00 0.0 0.00 4.37 F
1896 2159 0.037605 GAGGGACGAGCTTTTTCGGA 60.038 55.0 0.00 0.0 44.57 4.55 F
1906 2169 0.250166 CTTTTTCGGACGGTGGGAGT 60.250 55.0 0.00 0.0 0.00 3.85 F
2432 2701 0.468226 TGGCAGAGGAGAAACGTGTT 59.532 50.0 0.00 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 2140 0.037605 TCCGAAAAAGCTCGTCCCTC 60.038 55.000 0.00 0.0 37.11 4.30 R
3124 3393 1.075212 TCCCATTCATCTGTGTGCCAA 59.925 47.619 0.00 0.0 0.00 4.52 R
3744 4015 1.243902 CAAAAGCCGGCTAGTTCCAA 58.756 50.000 33.07 0.0 0.00 3.53 R
4100 4371 0.829333 ATCCAAGTGCATCGCTCTCT 59.171 50.000 0.00 0.0 30.88 3.10 R
4511 5572 0.034863 TATGGGAGGTCAAAACGGGC 60.035 55.000 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.031037 TTTGAATTTGCAGTCGACGC 57.969 45.000 20.46 20.46 0.00 5.19
23 24 0.940833 TTGAATTTGCAGTCGACGCA 59.059 45.000 24.25 24.25 37.68 5.24
24 25 0.234625 TGAATTTGCAGTCGACGCAC 59.765 50.000 26.64 18.37 39.59 5.34
25 26 0.452784 GAATTTGCAGTCGACGCACC 60.453 55.000 26.64 15.90 39.59 5.01
26 27 1.852067 AATTTGCAGTCGACGCACCC 61.852 55.000 26.64 9.86 39.59 4.61
27 28 2.731691 ATTTGCAGTCGACGCACCCT 62.732 55.000 26.64 15.39 39.59 4.34
28 29 2.089887 TTTGCAGTCGACGCACCCTA 62.090 55.000 26.64 14.51 39.59 3.53
29 30 2.506438 GCAGTCGACGCACCCTAC 60.506 66.667 21.73 0.77 0.00 3.18
30 31 2.181021 CAGTCGACGCACCCTACC 59.819 66.667 10.46 0.00 0.00 3.18
31 32 3.437795 AGTCGACGCACCCTACCG 61.438 66.667 10.46 0.00 0.00 4.02
32 33 3.741476 GTCGACGCACCCTACCGT 61.741 66.667 0.00 0.00 40.85 4.83
33 34 2.046411 TCGACGCACCCTACCGTA 60.046 61.111 0.00 0.00 37.87 4.02
34 35 2.108514 TCGACGCACCCTACCGTAG 61.109 63.158 0.00 0.00 37.87 3.51
35 36 2.108514 CGACGCACCCTACCGTAGA 61.109 63.158 7.16 0.00 37.87 2.59
36 37 1.442526 CGACGCACCCTACCGTAGAT 61.443 60.000 7.16 0.00 37.87 1.98
37 38 0.310232 GACGCACCCTACCGTAGATC 59.690 60.000 7.16 0.00 37.87 2.75
38 39 1.105759 ACGCACCCTACCGTAGATCC 61.106 60.000 7.16 0.00 35.69 3.36
39 40 1.803366 CGCACCCTACCGTAGATCCC 61.803 65.000 7.16 0.00 0.00 3.85
40 41 0.757935 GCACCCTACCGTAGATCCCA 60.758 60.000 7.16 0.00 0.00 4.37
41 42 1.784358 CACCCTACCGTAGATCCCAA 58.216 55.000 7.16 0.00 0.00 4.12
42 43 1.411612 CACCCTACCGTAGATCCCAAC 59.588 57.143 7.16 0.00 0.00 3.77
43 44 1.007479 ACCCTACCGTAGATCCCAACA 59.993 52.381 7.16 0.00 0.00 3.33
44 45 1.411612 CCCTACCGTAGATCCCAACAC 59.588 57.143 7.16 0.00 0.00 3.32
45 46 2.385803 CCTACCGTAGATCCCAACACT 58.614 52.381 7.16 0.00 0.00 3.55
46 47 2.764572 CCTACCGTAGATCCCAACACTT 59.235 50.000 7.16 0.00 0.00 3.16
47 48 3.197116 CCTACCGTAGATCCCAACACTTT 59.803 47.826 7.16 0.00 0.00 2.66
48 49 3.329929 ACCGTAGATCCCAACACTTTC 57.670 47.619 0.00 0.00 0.00 2.62
49 50 2.904434 ACCGTAGATCCCAACACTTTCT 59.096 45.455 0.00 0.00 0.00 2.52
50 51 3.262420 CCGTAGATCCCAACACTTTCTG 58.738 50.000 0.00 0.00 0.00 3.02
51 52 2.673368 CGTAGATCCCAACACTTTCTGC 59.327 50.000 0.00 0.00 0.00 4.26
52 53 2.957402 AGATCCCAACACTTTCTGCA 57.043 45.000 0.00 0.00 0.00 4.41
53 54 2.787994 AGATCCCAACACTTTCTGCAG 58.212 47.619 7.63 7.63 0.00 4.41
54 55 1.815003 GATCCCAACACTTTCTGCAGG 59.185 52.381 15.13 0.00 0.00 4.85
55 56 0.843309 TCCCAACACTTTCTGCAGGA 59.157 50.000 15.13 0.46 0.00 3.86
56 57 1.202806 TCCCAACACTTTCTGCAGGAG 60.203 52.381 15.13 14.52 0.00 3.69
57 58 1.477558 CCCAACACTTTCTGCAGGAGT 60.478 52.381 15.13 15.19 0.00 3.85
58 59 2.224523 CCCAACACTTTCTGCAGGAGTA 60.225 50.000 15.13 0.00 0.00 2.59
59 60 3.560025 CCCAACACTTTCTGCAGGAGTAT 60.560 47.826 15.13 4.97 0.00 2.12
60 61 4.074970 CCAACACTTTCTGCAGGAGTATT 58.925 43.478 15.13 11.00 0.00 1.89
61 62 5.245531 CCAACACTTTCTGCAGGAGTATTA 58.754 41.667 15.13 0.00 0.00 0.98
62 63 5.352569 CCAACACTTTCTGCAGGAGTATTAG 59.647 44.000 15.13 0.88 0.00 1.73
63 64 5.746990 ACACTTTCTGCAGGAGTATTAGT 57.253 39.130 15.13 1.62 0.00 2.24
64 65 5.482908 ACACTTTCTGCAGGAGTATTAGTG 58.517 41.667 18.37 18.37 37.19 2.74
65 66 4.872691 CACTTTCTGCAGGAGTATTAGTGG 59.127 45.833 15.13 1.60 0.00 4.00
66 67 4.777896 ACTTTCTGCAGGAGTATTAGTGGA 59.222 41.667 15.13 0.00 0.00 4.02
67 68 5.426833 ACTTTCTGCAGGAGTATTAGTGGAT 59.573 40.000 15.13 0.00 0.00 3.41
68 69 4.944619 TCTGCAGGAGTATTAGTGGATG 57.055 45.455 15.13 0.00 0.00 3.51
69 70 4.290093 TCTGCAGGAGTATTAGTGGATGT 58.710 43.478 15.13 0.00 0.00 3.06
70 71 4.716784 TCTGCAGGAGTATTAGTGGATGTT 59.283 41.667 15.13 0.00 0.00 2.71
71 72 4.769688 TGCAGGAGTATTAGTGGATGTTG 58.230 43.478 0.00 0.00 0.00 3.33
72 73 4.469586 TGCAGGAGTATTAGTGGATGTTGA 59.530 41.667 0.00 0.00 0.00 3.18
73 74 5.130975 TGCAGGAGTATTAGTGGATGTTGAT 59.869 40.000 0.00 0.00 0.00 2.57
74 75 5.468072 GCAGGAGTATTAGTGGATGTTGATG 59.532 44.000 0.00 0.00 0.00 3.07
75 76 6.586344 CAGGAGTATTAGTGGATGTTGATGT 58.414 40.000 0.00 0.00 0.00 3.06
76 77 7.686859 GCAGGAGTATTAGTGGATGTTGATGTA 60.687 40.741 0.00 0.00 0.00 2.29
77 78 8.204160 CAGGAGTATTAGTGGATGTTGATGTAA 58.796 37.037 0.00 0.00 0.00 2.41
78 79 8.204836 AGGAGTATTAGTGGATGTTGATGTAAC 58.795 37.037 0.00 0.00 39.80 2.50
90 91 6.612247 TGTTGATGTAACACACTTGGTAAG 57.388 37.500 0.00 0.00 44.07 2.34
91 92 6.116806 TGTTGATGTAACACACTTGGTAAGT 58.883 36.000 0.00 0.00 44.07 2.24
92 93 6.037720 TGTTGATGTAACACACTTGGTAAGTG 59.962 38.462 17.49 17.49 46.58 3.16
100 101 0.404426 ACTTGGTAAGTGGAAGGCCC 59.596 55.000 0.00 0.00 41.01 5.80
101 102 0.323451 CTTGGTAAGTGGAAGGCCCC 60.323 60.000 0.00 0.00 0.00 5.80
102 103 1.068943 TTGGTAAGTGGAAGGCCCCA 61.069 55.000 0.00 0.00 0.00 4.96
103 104 0.849094 TGGTAAGTGGAAGGCCCCAT 60.849 55.000 3.83 0.00 38.66 4.00
104 105 1.218844 GGTAAGTGGAAGGCCCCATA 58.781 55.000 3.83 0.00 38.66 2.74
105 106 1.780919 GGTAAGTGGAAGGCCCCATAT 59.219 52.381 3.83 0.00 38.66 1.78
106 107 2.177016 GGTAAGTGGAAGGCCCCATATT 59.823 50.000 3.83 5.55 38.66 1.28
107 108 2.459555 AAGTGGAAGGCCCCATATTG 57.540 50.000 3.83 0.00 38.66 1.90
108 109 1.607225 AGTGGAAGGCCCCATATTGA 58.393 50.000 3.83 0.00 38.66 2.57
109 110 1.496429 AGTGGAAGGCCCCATATTGAG 59.504 52.381 3.83 0.00 38.66 3.02
110 111 1.494721 GTGGAAGGCCCCATATTGAGA 59.505 52.381 3.83 0.00 38.66 3.27
111 112 1.776667 TGGAAGGCCCCATATTGAGAG 59.223 52.381 0.00 0.00 0.00 3.20
112 113 2.057922 GGAAGGCCCCATATTGAGAGA 58.942 52.381 0.00 0.00 0.00 3.10
113 114 2.443255 GGAAGGCCCCATATTGAGAGAA 59.557 50.000 0.00 0.00 0.00 2.87
114 115 3.075134 GGAAGGCCCCATATTGAGAGAAT 59.925 47.826 0.00 0.00 0.00 2.40
115 116 4.448347 GGAAGGCCCCATATTGAGAGAATT 60.448 45.833 0.00 0.00 0.00 2.17
116 117 5.222130 GGAAGGCCCCATATTGAGAGAATTA 60.222 44.000 0.00 0.00 0.00 1.40
117 118 5.930209 AGGCCCCATATTGAGAGAATTAA 57.070 39.130 0.00 0.00 0.00 1.40
118 119 6.279813 AGGCCCCATATTGAGAGAATTAAA 57.720 37.500 0.00 0.00 0.00 1.52
119 120 6.310149 AGGCCCCATATTGAGAGAATTAAAG 58.690 40.000 0.00 0.00 0.00 1.85
120 121 6.071320 GGCCCCATATTGAGAGAATTAAAGT 58.929 40.000 0.00 0.00 0.00 2.66
121 122 6.551227 GGCCCCATATTGAGAGAATTAAAGTT 59.449 38.462 0.00 0.00 0.00 2.66
122 123 7.724061 GGCCCCATATTGAGAGAATTAAAGTTA 59.276 37.037 0.00 0.00 0.00 2.24
123 124 8.787852 GCCCCATATTGAGAGAATTAAAGTTAG 58.212 37.037 0.00 0.00 0.00 2.34
124 125 9.853177 CCCCATATTGAGAGAATTAAAGTTAGT 57.147 33.333 0.00 0.00 0.00 2.24
178 179 6.322712 ACCTTGCTACCAAATAAAGTTTGACA 59.677 34.615 0.00 0.00 0.00 3.58
196 197 3.503363 TGACAAGCCTAAGCAAATCAGTG 59.497 43.478 0.00 0.00 43.56 3.66
202 203 4.768968 AGCCTAAGCAAATCAGTGAACATT 59.231 37.500 0.00 0.00 43.56 2.71
215 216 5.070446 TCAGTGAACATTCTTAGTGTGGACT 59.930 40.000 0.00 0.00 36.07 3.85
221 222 7.981789 TGAACATTCTTAGTGTGGACTATGATC 59.018 37.037 0.00 0.00 38.18 2.92
225 226 6.701145 TCTTAGTGTGGACTATGATCTCAC 57.299 41.667 0.00 0.00 35.14 3.51
228 229 2.103263 GTGTGGACTATGATCTCACCCC 59.897 54.545 0.00 0.00 0.00 4.95
239 240 1.866015 TCTCACCCCTGTGGATGTAG 58.134 55.000 0.00 0.00 42.98 2.74
240 241 1.361197 TCTCACCCCTGTGGATGTAGA 59.639 52.381 0.00 0.00 42.98 2.59
241 242 1.482593 CTCACCCCTGTGGATGTAGAC 59.517 57.143 0.00 0.00 42.98 2.59
242 243 1.203250 TCACCCCTGTGGATGTAGACA 60.203 52.381 0.00 0.00 42.98 3.41
243 244 1.066143 CACCCCTGTGGATGTAGACAC 60.066 57.143 0.00 0.00 38.90 3.67
244 245 1.275666 CCCCTGTGGATGTAGACACA 58.724 55.000 0.00 0.00 44.60 3.72
245 246 1.066143 CCCCTGTGGATGTAGACACAC 60.066 57.143 0.00 0.00 42.20 3.82
246 247 1.623311 CCCTGTGGATGTAGACACACA 59.377 52.381 6.10 6.10 42.20 3.72
247 248 2.237143 CCCTGTGGATGTAGACACACAT 59.763 50.000 6.57 0.00 42.20 3.21
248 249 3.450817 CCCTGTGGATGTAGACACACATA 59.549 47.826 6.57 0.00 42.20 2.29
249 250 4.081142 CCCTGTGGATGTAGACACACATAA 60.081 45.833 6.57 0.00 42.20 1.90
250 251 5.396772 CCCTGTGGATGTAGACACACATAAT 60.397 44.000 6.57 0.00 42.20 1.28
251 252 5.525012 CCTGTGGATGTAGACACACATAATG 59.475 44.000 6.57 0.00 42.20 1.90
252 253 4.875536 TGTGGATGTAGACACACATAATGC 59.124 41.667 2.84 0.00 42.20 3.56
253 254 4.875536 GTGGATGTAGACACACATAATGCA 59.124 41.667 0.00 0.00 39.25 3.96
258 259 7.603784 GGATGTAGACACACATAATGCATATGA 59.396 37.037 6.97 1.69 43.71 2.15
309 310 1.490490 TCCCACCATCTCATAAGTGGC 59.510 52.381 2.46 0.00 46.88 5.01
310 311 1.477558 CCCACCATCTCATAAGTGGCC 60.478 57.143 0.00 0.00 46.88 5.36
311 312 1.477558 CCACCATCTCATAAGTGGCCC 60.478 57.143 0.00 0.00 43.02 5.80
322 323 2.403252 AAGTGGCCCTATCAAAGTCG 57.597 50.000 0.00 0.00 0.00 4.18
373 375 7.625498 TGGTTAGATATCACCATATCAACCA 57.375 36.000 20.74 20.74 45.98 3.67
388 390 7.828717 CCATATCAACCAATATGTATGCTACCA 59.171 37.037 3.87 0.00 37.74 3.25
389 391 9.399797 CATATCAACCAATATGTATGCTACCAT 57.600 33.333 0.00 0.00 35.69 3.55
397 399 4.607293 ATGTATGCTACCATCGTGACAT 57.393 40.909 0.00 0.00 32.85 3.06
401 403 1.548269 TGCTACCATCGTGACATGTGA 59.452 47.619 1.15 0.00 0.00 3.58
405 407 4.808895 GCTACCATCGTGACATGTGATAAA 59.191 41.667 1.15 0.00 0.00 1.40
410 412 6.150976 ACCATCGTGACATGTGATAAACAATT 59.849 34.615 1.15 0.00 43.61 2.32
414 416 7.643579 TCGTGACATGTGATAAACAATTCAAA 58.356 30.769 1.15 0.00 43.61 2.69
416 418 8.914654 CGTGACATGTGATAAACAATTCAAATT 58.085 29.630 1.15 0.00 43.61 1.82
455 466 6.867662 ATGCTAGTTTATGTGTATGCCTTC 57.132 37.500 0.00 0.00 0.00 3.46
461 472 9.764363 CTAGTTTATGTGTATGCCTTCTCATAA 57.236 33.333 0.00 0.00 31.43 1.90
494 505 7.658982 TGATGAGACCTATTCATAACAATGCTC 59.341 37.037 0.00 0.00 35.50 4.26
499 510 8.432013 AGACCTATTCATAACAATGCTCATACA 58.568 33.333 0.00 0.00 0.00 2.29
503 514 9.821662 CTATTCATAACAATGCTCATACATGTG 57.178 33.333 9.11 0.00 0.00 3.21
521 532 4.128925 TGTGCACATTAGGTTTTGCAAA 57.871 36.364 17.42 8.05 46.10 3.68
525 536 4.937620 TGCACATTAGGTTTTGCAAACAAA 59.062 33.333 12.39 4.37 41.90 2.83
592 674 2.581354 GCTCTGCCACTGATCGGT 59.419 61.111 0.00 0.00 0.00 4.69
595 677 1.107114 CTCTGCCACTGATCGGTACT 58.893 55.000 6.92 0.00 0.00 2.73
598 680 0.817654 TGCCACTGATCGGTACTCTG 59.182 55.000 6.92 0.00 0.00 3.35
600 682 0.103208 CCACTGATCGGTACTCTGGC 59.897 60.000 6.92 0.00 0.00 4.85
603 685 1.478510 ACTGATCGGTACTCTGGCAAG 59.521 52.381 5.05 0.00 0.00 4.01
604 686 0.175760 TGATCGGTACTCTGGCAAGC 59.824 55.000 0.00 0.00 0.00 4.01
605 687 0.461961 GATCGGTACTCTGGCAAGCT 59.538 55.000 0.00 0.00 0.00 3.74
609 798 1.067142 CGGTACTCTGGCAAGCTGTAA 60.067 52.381 0.00 0.00 0.00 2.41
610 799 2.347731 GGTACTCTGGCAAGCTGTAAC 58.652 52.381 0.00 0.00 0.00 2.50
614 803 0.602638 TCTGGCAAGCTGTAACGGTG 60.603 55.000 0.00 0.00 0.00 4.94
620 809 0.756903 AAGCTGTAACGGTGTGGTCT 59.243 50.000 0.00 0.00 0.00 3.85
628 817 4.398988 TGTAACGGTGTGGTCTTATCGTAT 59.601 41.667 0.00 0.00 0.00 3.06
629 818 3.705043 ACGGTGTGGTCTTATCGTATC 57.295 47.619 0.00 0.00 0.00 2.24
630 819 3.018856 ACGGTGTGGTCTTATCGTATCA 58.981 45.455 0.00 0.00 0.00 2.15
631 820 3.066342 ACGGTGTGGTCTTATCGTATCAG 59.934 47.826 0.00 0.00 0.00 2.90
632 821 3.314357 CGGTGTGGTCTTATCGTATCAGA 59.686 47.826 0.00 0.00 0.00 3.27
633 822 4.554919 CGGTGTGGTCTTATCGTATCAGAG 60.555 50.000 0.00 0.00 0.00 3.35
634 823 4.291783 GTGTGGTCTTATCGTATCAGAGC 58.708 47.826 0.00 0.00 35.92 4.09
635 824 3.951680 TGTGGTCTTATCGTATCAGAGCA 59.048 43.478 0.00 0.00 41.57 4.26
636 825 4.584743 TGTGGTCTTATCGTATCAGAGCAT 59.415 41.667 11.40 0.00 44.53 3.79
637 826 4.920340 GTGGTCTTATCGTATCAGAGCATG 59.080 45.833 11.40 0.00 44.53 4.06
638 827 4.021981 TGGTCTTATCGTATCAGAGCATGG 60.022 45.833 0.00 0.00 39.52 3.66
639 828 4.021894 GGTCTTATCGTATCAGAGCATGGT 60.022 45.833 0.00 0.00 35.53 3.55
640 829 5.509840 GGTCTTATCGTATCAGAGCATGGTT 60.510 44.000 0.00 0.00 35.53 3.67
641 830 6.294564 GGTCTTATCGTATCAGAGCATGGTTA 60.295 42.308 0.00 0.00 35.53 2.85
642 831 7.145985 GTCTTATCGTATCAGAGCATGGTTAA 58.854 38.462 0.00 0.00 0.00 2.01
643 832 7.815068 GTCTTATCGTATCAGAGCATGGTTAAT 59.185 37.037 0.00 0.00 0.00 1.40
644 833 9.020731 TCTTATCGTATCAGAGCATGGTTAATA 57.979 33.333 0.00 0.00 0.00 0.98
645 834 9.295214 CTTATCGTATCAGAGCATGGTTAATAG 57.705 37.037 0.00 0.00 0.00 1.73
646 835 6.650427 TCGTATCAGAGCATGGTTAATAGT 57.350 37.500 0.00 0.00 0.00 2.12
647 836 6.447162 TCGTATCAGAGCATGGTTAATAGTG 58.553 40.000 0.00 0.00 0.00 2.74
648 837 6.040504 TCGTATCAGAGCATGGTTAATAGTGT 59.959 38.462 0.00 0.00 0.00 3.55
649 838 7.229907 TCGTATCAGAGCATGGTTAATAGTGTA 59.770 37.037 0.00 0.00 0.00 2.90
650 839 7.539022 CGTATCAGAGCATGGTTAATAGTGTAG 59.461 40.741 0.00 0.00 0.00 2.74
651 840 5.601662 TCAGAGCATGGTTAATAGTGTAGC 58.398 41.667 0.00 0.00 0.00 3.58
652 841 4.752101 CAGAGCATGGTTAATAGTGTAGCC 59.248 45.833 0.00 0.00 0.00 3.93
653 842 4.408921 AGAGCATGGTTAATAGTGTAGCCA 59.591 41.667 0.00 0.00 38.54 4.75
654 843 5.104527 AGAGCATGGTTAATAGTGTAGCCAA 60.105 40.000 0.00 0.00 37.81 4.52
655 844 4.881850 AGCATGGTTAATAGTGTAGCCAAC 59.118 41.667 0.00 0.00 37.81 3.77
656 845 4.881850 GCATGGTTAATAGTGTAGCCAACT 59.118 41.667 0.00 0.00 37.81 3.16
657 846 5.220854 GCATGGTTAATAGTGTAGCCAACTG 60.221 44.000 0.00 0.00 37.81 3.16
658 847 5.492855 TGGTTAATAGTGTAGCCAACTGT 57.507 39.130 0.00 0.00 32.04 3.55
659 848 5.871834 TGGTTAATAGTGTAGCCAACTGTT 58.128 37.500 0.00 0.00 32.04 3.16
660 849 5.703592 TGGTTAATAGTGTAGCCAACTGTTG 59.296 40.000 13.50 13.50 32.04 3.33
675 864 6.208644 CCAACTGTTGGCTATATAAACATGC 58.791 40.000 25.21 0.00 45.17 4.06
676 865 6.208644 CAACTGTTGGCTATATAAACATGCC 58.791 40.000 12.66 3.54 43.49 4.40
683 872 6.764308 GGCTATATAAACATGCCATGTCAT 57.236 37.500 11.38 10.02 44.07 3.06
684 873 6.789262 GGCTATATAAACATGCCATGTCATC 58.211 40.000 11.38 0.00 44.07 2.92
685 874 6.600822 GGCTATATAAACATGCCATGTCATCT 59.399 38.462 11.38 3.60 44.07 2.90
686 875 7.770433 GGCTATATAAACATGCCATGTCATCTA 59.230 37.037 11.38 4.50 44.07 1.98
687 876 9.166173 GCTATATAAACATGCCATGTCATCTAA 57.834 33.333 11.38 0.00 44.07 2.10
690 879 7.886629 ATAAACATGCCATGTCATCTAAAGT 57.113 32.000 11.38 0.00 44.07 2.66
691 880 6.594788 AAACATGCCATGTCATCTAAAGTT 57.405 33.333 11.38 0.00 44.07 2.66
692 881 7.701539 AAACATGCCATGTCATCTAAAGTTA 57.298 32.000 11.38 0.00 44.07 2.24
693 882 6.932356 ACATGCCATGTCATCTAAAGTTAG 57.068 37.500 4.03 0.00 39.92 2.34
694 883 5.297776 ACATGCCATGTCATCTAAAGTTAGC 59.702 40.000 4.03 0.00 39.92 3.09
695 884 4.842574 TGCCATGTCATCTAAAGTTAGCA 58.157 39.130 0.00 0.00 0.00 3.49
696 885 5.439721 TGCCATGTCATCTAAAGTTAGCAT 58.560 37.500 0.00 0.00 0.00 3.79
697 886 5.887598 TGCCATGTCATCTAAAGTTAGCATT 59.112 36.000 0.00 0.00 0.00 3.56
698 887 7.053498 TGCCATGTCATCTAAAGTTAGCATTA 58.947 34.615 0.00 0.00 0.00 1.90
699 888 7.720957 TGCCATGTCATCTAAAGTTAGCATTAT 59.279 33.333 0.00 0.00 0.00 1.28
700 889 8.571336 GCCATGTCATCTAAAGTTAGCATTATT 58.429 33.333 0.00 0.00 0.00 1.40
832 1021 3.866496 GTGAAGACGAGCTCTTGTTTTG 58.134 45.455 12.85 0.00 39.53 2.44
833 1022 3.309954 GTGAAGACGAGCTCTTGTTTTGT 59.690 43.478 12.85 0.00 39.53 2.83
834 1023 3.938963 TGAAGACGAGCTCTTGTTTTGTT 59.061 39.130 12.85 0.00 39.53 2.83
835 1024 4.394920 TGAAGACGAGCTCTTGTTTTGTTT 59.605 37.500 12.85 0.00 39.53 2.83
836 1025 4.278678 AGACGAGCTCTTGTTTTGTTTG 57.721 40.909 12.85 0.00 0.00 2.93
837 1026 3.938963 AGACGAGCTCTTGTTTTGTTTGA 59.061 39.130 12.85 0.00 0.00 2.69
838 1027 4.034510 AGACGAGCTCTTGTTTTGTTTGAG 59.965 41.667 12.85 0.00 0.00 3.02
839 1028 3.938963 ACGAGCTCTTGTTTTGTTTGAGA 59.061 39.130 12.85 0.00 0.00 3.27
840 1029 4.034510 ACGAGCTCTTGTTTTGTTTGAGAG 59.965 41.667 12.85 0.00 37.49 3.20
843 1032 3.969899 CTCTTGTTTTGTTTGAGAGCCC 58.030 45.455 0.00 0.00 0.00 5.19
844 1033 2.693074 TCTTGTTTTGTTTGAGAGCCCC 59.307 45.455 0.00 0.00 0.00 5.80
845 1034 2.452600 TGTTTTGTTTGAGAGCCCCT 57.547 45.000 0.00 0.00 0.00 4.79
846 1035 2.306847 TGTTTTGTTTGAGAGCCCCTC 58.693 47.619 0.00 0.00 42.30 4.30
852 1041 3.072476 TGAGAGCCCCTCACTTGC 58.928 61.111 2.59 0.00 46.38 4.01
881 1070 1.014564 CCGGCGAAGACTCCAAACTC 61.015 60.000 9.30 0.00 0.00 3.01
885 1074 1.983972 CGAAGACTCCAAACTCCTCG 58.016 55.000 0.00 0.00 0.00 4.63
889 1078 1.889829 AGACTCCAAACTCCTCGACAG 59.110 52.381 0.00 0.00 0.00 3.51
890 1079 0.969894 ACTCCAAACTCCTCGACAGG 59.030 55.000 0.00 0.00 42.01 4.00
892 1081 1.376037 CCAAACTCCTCGACAGGGC 60.376 63.158 0.00 0.00 40.80 5.19
894 1083 1.906824 AAACTCCTCGACAGGGCGA 60.907 57.895 0.00 0.00 40.80 5.54
896 1085 3.062466 CTCCTCGACAGGGCGACA 61.062 66.667 0.00 0.00 40.80 4.35
948 1147 2.540383 TCAAAGGCTAGCAGAGGAAGA 58.460 47.619 18.24 1.79 0.00 2.87
976 1175 2.045536 CCTTCCAGGTGCTCCAGC 60.046 66.667 7.70 0.00 42.50 4.85
977 1176 2.600729 CCTTCCAGGTGCTCCAGCT 61.601 63.158 7.70 0.00 43.33 4.24
978 1177 1.078567 CTTCCAGGTGCTCCAGCTC 60.079 63.158 7.70 0.00 40.40 4.09
1602 1857 6.714492 AGAAACATTTCAATTTTCAAACGCC 58.286 32.000 7.10 0.00 39.61 5.68
1682 1937 1.153353 TTTGGTTCGCACGAAGGATC 58.847 50.000 5.60 0.00 34.49 3.36
1702 1957 1.268692 CGTTGTGAGTTGTTGCTGCAT 60.269 47.619 1.84 0.00 0.00 3.96
1801 2064 5.046231 GGACTACCTCCTTTTCTTGTCTGAT 60.046 44.000 0.00 0.00 35.89 2.90
1802 2065 6.154706 GGACTACCTCCTTTTCTTGTCTGATA 59.845 42.308 0.00 0.00 35.89 2.15
1803 2066 6.937392 ACTACCTCCTTTTCTTGTCTGATAC 58.063 40.000 0.00 0.00 0.00 2.24
1804 2067 6.726764 ACTACCTCCTTTTCTTGTCTGATACT 59.273 38.462 0.00 0.00 0.00 2.12
1805 2068 6.043854 ACCTCCTTTTCTTGTCTGATACTC 57.956 41.667 0.00 0.00 0.00 2.59
1806 2069 5.046231 ACCTCCTTTTCTTGTCTGATACTCC 60.046 44.000 0.00 0.00 0.00 3.85
1807 2070 5.422214 TCCTTTTCTTGTCTGATACTCCC 57.578 43.478 0.00 0.00 0.00 4.30
1808 2071 5.094387 TCCTTTTCTTGTCTGATACTCCCT 58.906 41.667 0.00 0.00 0.00 4.20
1809 2072 5.187967 TCCTTTTCTTGTCTGATACTCCCTC 59.812 44.000 0.00 0.00 0.00 4.30
1810 2073 5.422214 TTTTCTTGTCTGATACTCCCTCC 57.578 43.478 0.00 0.00 0.00 4.30
1811 2074 2.656002 TCTTGTCTGATACTCCCTCCG 58.344 52.381 0.00 0.00 0.00 4.63
1812 2075 2.025226 TCTTGTCTGATACTCCCTCCGT 60.025 50.000 0.00 0.00 0.00 4.69
1813 2076 2.054232 TGTCTGATACTCCCTCCGTC 57.946 55.000 0.00 0.00 0.00 4.79
1814 2077 1.320507 GTCTGATACTCCCTCCGTCC 58.679 60.000 0.00 0.00 0.00 4.79
1815 2078 0.185416 TCTGATACTCCCTCCGTCCC 59.815 60.000 0.00 0.00 0.00 4.46
1816 2079 0.106167 CTGATACTCCCTCCGTCCCA 60.106 60.000 0.00 0.00 0.00 4.37
1817 2080 0.337082 TGATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
1818 2081 1.273381 TGATACTCCCTCCGTCCCAAA 60.273 52.381 0.00 0.00 0.00 3.28
1819 2082 1.835531 GATACTCCCTCCGTCCCAAAA 59.164 52.381 0.00 0.00 0.00 2.44
1820 2083 1.732117 TACTCCCTCCGTCCCAAAAA 58.268 50.000 0.00 0.00 0.00 1.94
1821 2084 0.400594 ACTCCCTCCGTCCCAAAAAG 59.599 55.000 0.00 0.00 0.00 2.27
1822 2085 0.960861 CTCCCTCCGTCCCAAAAAGC 60.961 60.000 0.00 0.00 0.00 3.51
1823 2086 1.074951 CCCTCCGTCCCAAAAAGCT 59.925 57.895 0.00 0.00 0.00 3.74
1824 2087 0.539669 CCCTCCGTCCCAAAAAGCTT 60.540 55.000 0.00 0.00 0.00 3.74
1825 2088 0.598065 CCTCCGTCCCAAAAAGCTTG 59.402 55.000 0.00 0.00 0.00 4.01
1826 2089 1.318576 CTCCGTCCCAAAAAGCTTGT 58.681 50.000 0.00 0.00 0.00 3.16
1827 2090 1.681264 CTCCGTCCCAAAAAGCTTGTT 59.319 47.619 0.00 0.00 0.00 2.83
1828 2091 1.679153 TCCGTCCCAAAAAGCTTGTTC 59.321 47.619 0.00 0.00 0.00 3.18
1829 2092 1.269569 CCGTCCCAAAAAGCTTGTTCC 60.270 52.381 0.00 0.00 0.00 3.62
1830 2093 1.681264 CGTCCCAAAAAGCTTGTTCCT 59.319 47.619 0.00 0.00 0.00 3.36
1831 2094 2.287608 CGTCCCAAAAAGCTTGTTCCTC 60.288 50.000 0.00 0.00 0.00 3.71
1832 2095 2.693074 GTCCCAAAAAGCTTGTTCCTCA 59.307 45.455 0.00 0.00 0.00 3.86
1833 2096 3.132111 GTCCCAAAAAGCTTGTTCCTCAA 59.868 43.478 0.00 0.00 34.61 3.02
1834 2097 3.772025 TCCCAAAAAGCTTGTTCCTCAAA 59.228 39.130 0.00 0.00 35.48 2.69
1835 2098 4.408596 TCCCAAAAAGCTTGTTCCTCAAAT 59.591 37.500 0.00 0.00 35.48 2.32
1836 2099 4.512571 CCCAAAAAGCTTGTTCCTCAAATG 59.487 41.667 0.00 0.00 35.48 2.32
1837 2100 4.512571 CCAAAAAGCTTGTTCCTCAAATGG 59.487 41.667 0.00 0.00 35.48 3.16
1838 2101 5.358922 CAAAAAGCTTGTTCCTCAAATGGA 58.641 37.500 0.00 0.00 35.48 3.41
1839 2102 4.590850 AAAGCTTGTTCCTCAAATGGAC 57.409 40.909 0.00 0.00 35.58 4.02
1840 2103 2.154462 AGCTTGTTCCTCAAATGGACG 58.846 47.619 0.00 0.00 35.58 4.79
1841 2104 1.880027 GCTTGTTCCTCAAATGGACGT 59.120 47.619 0.00 0.00 35.58 4.34
1842 2105 3.071479 GCTTGTTCCTCAAATGGACGTA 58.929 45.455 0.00 0.00 35.58 3.57
1843 2106 3.689649 GCTTGTTCCTCAAATGGACGTAT 59.310 43.478 0.00 0.00 35.58 3.06
1844 2107 4.201822 GCTTGTTCCTCAAATGGACGTATC 60.202 45.833 0.00 0.00 35.58 2.24
1845 2108 4.819105 TGTTCCTCAAATGGACGTATCT 57.181 40.909 0.00 0.00 35.58 1.98
1846 2109 5.925506 TGTTCCTCAAATGGACGTATCTA 57.074 39.130 0.00 0.00 35.58 1.98
1847 2110 5.902681 TGTTCCTCAAATGGACGTATCTAG 58.097 41.667 0.00 0.00 35.58 2.43
1848 2111 4.585955 TCCTCAAATGGACGTATCTAGC 57.414 45.455 0.00 0.00 0.00 3.42
1849 2112 3.958147 TCCTCAAATGGACGTATCTAGCA 59.042 43.478 0.00 0.00 0.00 3.49
1850 2113 4.051922 CCTCAAATGGACGTATCTAGCAC 58.948 47.826 0.00 0.00 0.00 4.40
1851 2114 4.202161 CCTCAAATGGACGTATCTAGCACT 60.202 45.833 0.00 0.00 0.00 4.40
1852 2115 5.009710 CCTCAAATGGACGTATCTAGCACTA 59.990 44.000 0.00 0.00 0.00 2.74
1853 2116 6.459670 TCAAATGGACGTATCTAGCACTAA 57.540 37.500 0.00 0.00 0.00 2.24
1854 2117 6.270815 TCAAATGGACGTATCTAGCACTAAC 58.729 40.000 0.00 0.00 0.00 2.34
1855 2118 6.096423 TCAAATGGACGTATCTAGCACTAACT 59.904 38.462 0.00 0.00 0.00 2.24
1856 2119 6.466885 AATGGACGTATCTAGCACTAACTT 57.533 37.500 0.00 0.00 0.00 2.66
1857 2120 5.244785 TGGACGTATCTAGCACTAACTTG 57.755 43.478 0.00 0.00 0.00 3.16
1858 2121 4.945543 TGGACGTATCTAGCACTAACTTGA 59.054 41.667 0.00 0.00 0.00 3.02
1859 2122 5.593095 TGGACGTATCTAGCACTAACTTGAT 59.407 40.000 0.00 0.00 36.37 2.57
1860 2123 5.915758 GGACGTATCTAGCACTAACTTGATG 59.084 44.000 0.00 0.00 34.60 3.07
1861 2124 5.282510 ACGTATCTAGCACTAACTTGATGC 58.717 41.667 0.00 0.00 39.74 3.91
1871 2134 7.721286 GCACTAACTTGATGCTAGATACATT 57.279 36.000 0.00 0.00 36.40 2.71
1872 2135 7.791949 GCACTAACTTGATGCTAGATACATTC 58.208 38.462 0.00 0.00 36.40 2.67
1873 2136 7.439356 GCACTAACTTGATGCTAGATACATTCA 59.561 37.037 0.00 0.00 36.40 2.57
1874 2137 9.486497 CACTAACTTGATGCTAGATACATTCAT 57.514 33.333 0.00 0.00 0.00 2.57
1878 2141 8.969260 ACTTGATGCTAGATACATTCATTTGA 57.031 30.769 0.00 0.00 0.00 2.69
1879 2142 9.053840 ACTTGATGCTAGATACATTCATTTGAG 57.946 33.333 0.00 0.00 0.00 3.02
1880 2143 7.974482 TGATGCTAGATACATTCATTTGAGG 57.026 36.000 0.00 0.00 0.00 3.86
1881 2144 6.938596 TGATGCTAGATACATTCATTTGAGGG 59.061 38.462 0.00 0.00 0.00 4.30
1882 2145 6.499106 TGCTAGATACATTCATTTGAGGGA 57.501 37.500 0.00 0.00 0.00 4.20
1883 2146 6.291377 TGCTAGATACATTCATTTGAGGGAC 58.709 40.000 0.00 0.00 0.00 4.46
1884 2147 5.406780 GCTAGATACATTCATTTGAGGGACG 59.593 44.000 0.00 0.00 0.00 4.79
1885 2148 5.614324 AGATACATTCATTTGAGGGACGA 57.386 39.130 0.00 0.00 0.00 4.20
1886 2149 5.605534 AGATACATTCATTTGAGGGACGAG 58.394 41.667 0.00 0.00 0.00 4.18
1887 2150 2.359900 ACATTCATTTGAGGGACGAGC 58.640 47.619 0.00 0.00 0.00 5.03
1888 2151 2.026822 ACATTCATTTGAGGGACGAGCT 60.027 45.455 0.00 0.00 0.00 4.09
1889 2152 2.859165 TTCATTTGAGGGACGAGCTT 57.141 45.000 0.00 0.00 0.00 3.74
1890 2153 2.859165 TCATTTGAGGGACGAGCTTT 57.141 45.000 0.00 0.00 0.00 3.51
1891 2154 3.140325 TCATTTGAGGGACGAGCTTTT 57.860 42.857 0.00 0.00 0.00 2.27
1892 2155 3.486383 TCATTTGAGGGACGAGCTTTTT 58.514 40.909 0.00 0.00 0.00 1.94
1893 2156 3.502211 TCATTTGAGGGACGAGCTTTTTC 59.498 43.478 0.00 0.00 0.00 2.29
1894 2157 1.508632 TTGAGGGACGAGCTTTTTCG 58.491 50.000 0.00 0.00 45.70 3.46
1895 2158 0.320421 TGAGGGACGAGCTTTTTCGG 60.320 55.000 0.00 0.00 44.57 4.30
1896 2159 0.037605 GAGGGACGAGCTTTTTCGGA 60.038 55.000 0.00 0.00 44.57 4.55
1897 2160 0.320508 AGGGACGAGCTTTTTCGGAC 60.321 55.000 0.00 0.00 44.57 4.79
1898 2161 1.623973 GGGACGAGCTTTTTCGGACG 61.624 60.000 0.00 0.00 44.57 4.79
1899 2162 1.623973 GGACGAGCTTTTTCGGACGG 61.624 60.000 0.00 0.00 44.57 4.79
1900 2163 0.942884 GACGAGCTTTTTCGGACGGT 60.943 55.000 0.00 0.00 44.57 4.83
1901 2164 1.219522 ACGAGCTTTTTCGGACGGTG 61.220 55.000 0.00 0.00 44.57 4.94
1902 2165 1.866925 GAGCTTTTTCGGACGGTGG 59.133 57.895 0.00 0.00 0.00 4.61
1903 2166 1.574702 GAGCTTTTTCGGACGGTGGG 61.575 60.000 0.00 0.00 0.00 4.61
1904 2167 1.598685 GCTTTTTCGGACGGTGGGA 60.599 57.895 0.00 0.00 0.00 4.37
1905 2168 1.574702 GCTTTTTCGGACGGTGGGAG 61.575 60.000 0.00 0.00 0.00 4.30
1906 2169 0.250166 CTTTTTCGGACGGTGGGAGT 60.250 55.000 0.00 0.00 0.00 3.85
2128 2392 1.493022 AGGTAGTTTGGCTTGGTGTCA 59.507 47.619 0.00 0.00 0.00 3.58
2161 2426 7.812648 TCCGTGAAAATAGGTAAAATGAACTG 58.187 34.615 0.00 0.00 0.00 3.16
2186 2451 7.178274 TGGGTGCTTTATTAATTTGATGACAGT 59.822 33.333 0.00 0.00 0.00 3.55
2198 2463 8.524870 AATTTGATGACAGTAAAATGAAGTGC 57.475 30.769 0.00 0.00 0.00 4.40
2230 2495 4.863131 AGTTTAGCAATTCTACCGAGTTCG 59.137 41.667 0.00 0.00 39.44 3.95
2268 2533 2.093764 GCTCTTGCTGTGGTCATAGACT 60.094 50.000 0.00 0.00 36.03 3.24
2432 2701 0.468226 TGGCAGAGGAGAAACGTGTT 59.532 50.000 0.00 0.00 0.00 3.32
2659 2928 1.000955 GGACATCATCCCGCGAATACT 59.999 52.381 8.23 0.00 42.46 2.12
2699 2968 6.287589 TCCTCTAGAGAACAAATTCAGTCC 57.712 41.667 21.76 0.00 37.29 3.85
2866 3135 4.021229 TCAATCCTAGGAACGCTGACTTA 58.979 43.478 17.30 0.00 0.00 2.24
2937 3206 4.929211 TGACAAGTACCGATCAACTGATTG 59.071 41.667 0.00 0.51 34.37 2.67
3124 3393 5.126699 AGAGCAATTTCATCATCCCTTCT 57.873 39.130 0.00 0.00 0.00 2.85
3128 3397 4.690122 CAATTTCATCATCCCTTCTTGGC 58.310 43.478 0.00 0.00 0.00 4.52
3130 3399 2.425143 TCATCATCCCTTCTTGGCAC 57.575 50.000 0.00 0.00 0.00 5.01
3447 3718 6.552008 TCCATCTCCATAAAAGGTGTTTTCT 58.448 36.000 0.00 0.00 37.12 2.52
3465 3736 8.245491 GTGTTTTCTCTAAGTTTAAACCACCAA 58.755 33.333 14.72 0.00 0.00 3.67
3484 3755 9.315363 ACCACCAATAAATTTAATAACCAGTCA 57.685 29.630 1.21 0.00 0.00 3.41
3575 3846 1.250328 CTGCTGCACAATGGGAGAAA 58.750 50.000 0.00 0.00 0.00 2.52
3744 4015 5.313712 ACTTCAATTCAAATGTACGGAGGT 58.686 37.500 0.00 0.00 0.00 3.85
4100 4371 3.975312 TGAAAGACAGGGTGGGTAAACTA 59.025 43.478 0.00 0.00 0.00 2.24
4190 4461 3.623060 CCTTTGTGATATGGTGGAAGACG 59.377 47.826 0.00 0.00 0.00 4.18
4217 4488 4.363990 CAGCACAGGTCCGCGTCT 62.364 66.667 4.92 0.00 0.00 4.18
4262 4533 3.731264 CGTAAGAGAATTTCTCCGTCGCT 60.731 47.826 20.28 0.87 44.42 4.93
4268 4539 2.672961 ATTTCTCCGTCGCTTGATGA 57.327 45.000 0.00 0.00 0.00 2.92
4289 4560 4.593206 TGAGGTAGCCATTTCCGATCTAAT 59.407 41.667 0.00 0.00 0.00 1.73
4305 4576 0.613260 TAATCGGAACTGCTGGCACT 59.387 50.000 0.00 0.00 0.00 4.40
4326 4597 5.525378 CACTGGATATTGTAAGCCTGAACTC 59.475 44.000 0.00 0.00 0.00 3.01
4359 4630 7.004555 AGTCATTTGTGTGTAGTATTCTCCA 57.995 36.000 0.00 0.00 0.00 3.86
4419 4692 2.428171 CCAATAAACTGACAGGCCCATG 59.572 50.000 7.51 0.00 0.00 3.66
4440 4713 4.653868 TGGTTTTATCTCGCCTTACCAAA 58.346 39.130 0.00 0.00 31.71 3.28
4453 4726 2.112279 TACCAAAGTGTCCCTCTGGT 57.888 50.000 0.00 0.00 42.89 4.00
4454 4727 2.112279 ACCAAAGTGTCCCTCTGGTA 57.888 50.000 0.00 0.00 38.62 3.25
4502 5563 0.608035 TTTGCCCCTCAATCGTCCAC 60.608 55.000 0.00 0.00 34.12 4.02
4523 5592 3.370231 ATGGCGCCCGTTTTGACC 61.370 61.111 26.77 0.00 0.00 4.02
4524 5593 3.860930 ATGGCGCCCGTTTTGACCT 62.861 57.895 26.77 0.00 0.00 3.85
4539 5608 4.591321 TTGACCTCCCATATTTTCTGCT 57.409 40.909 0.00 0.00 0.00 4.24
4570 5639 1.283321 GCTCCTCAAATTGTCCTCCCT 59.717 52.381 0.00 0.00 0.00 4.20
4594 5663 4.099266 AGTTAAGGCATTTTGACAAGCACA 59.901 37.500 0.00 0.00 0.00 4.57
4595 5664 2.514205 AGGCATTTTGACAAGCACAC 57.486 45.000 0.97 0.00 0.00 3.82
4611 5680 1.298413 CACTGTATCCGACCTCGCG 60.298 63.158 0.00 0.00 38.18 5.87
4656 5729 4.954118 TGGCCGGACCTCCAGTGT 62.954 66.667 3.83 0.00 40.22 3.55
4691 5764 1.027357 AGTGCTGGCTTCTGTTGTTG 58.973 50.000 0.00 0.00 0.00 3.33
4693 5766 1.946768 GTGCTGGCTTCTGTTGTTGTA 59.053 47.619 0.00 0.00 0.00 2.41
4694 5767 2.357637 GTGCTGGCTTCTGTTGTTGTAA 59.642 45.455 0.00 0.00 0.00 2.41
4696 5769 2.287608 GCTGGCTTCTGTTGTTGTAACC 60.288 50.000 0.00 0.00 0.00 2.85
4715 5788 2.308570 ACCACTAAGATGACCCATTGCA 59.691 45.455 0.00 0.00 0.00 4.08
4732 5805 0.609662 GCACCAATGATGCAAAGGGT 59.390 50.000 0.00 0.00 42.88 4.34
4751 5824 3.084786 GGTGAGAGCAAGCCAAGTATTT 58.915 45.455 0.00 0.00 0.00 1.40
4757 5830 6.714810 TGAGAGCAAGCCAAGTATTTAAAGAA 59.285 34.615 0.00 0.00 0.00 2.52
4834 5933 4.679662 CTGGCAATGTCATGATTTTCTCC 58.320 43.478 0.00 0.00 0.00 3.71
4849 5948 5.570234 TTTTCTCCAACCAGTGTAAACAC 57.430 39.130 5.07 5.07 46.77 3.32
4935 6040 5.184864 TCACAAACTTGTTTTGACCACAGAT 59.815 36.000 3.81 0.00 46.76 2.90
4936 6041 5.516339 CACAAACTTGTTTTGACCACAGATC 59.484 40.000 3.81 0.00 46.76 2.75
4937 6042 5.184864 ACAAACTTGTTTTGACCACAGATCA 59.815 36.000 3.81 0.00 46.76 2.92
4939 6044 4.526970 ACTTGTTTTGACCACAGATCAGT 58.473 39.130 0.00 0.00 0.00 3.41
4940 6045 4.576463 ACTTGTTTTGACCACAGATCAGTC 59.424 41.667 0.00 0.00 0.00 3.51
4941 6046 4.149511 TGTTTTGACCACAGATCAGTCA 57.850 40.909 0.00 0.00 38.70 3.41
5017 6122 5.108517 GCTATACATATCTTGCTCAGAGCC 58.891 45.833 20.16 2.47 41.51 4.70
5018 6123 2.522836 ACATATCTTGCTCAGAGCCG 57.477 50.000 20.16 10.91 41.51 5.52
5020 6125 2.169352 ACATATCTTGCTCAGAGCCGTT 59.831 45.455 20.16 8.48 41.51 4.44
5021 6126 2.299993 TATCTTGCTCAGAGCCGTTG 57.700 50.000 20.16 7.26 41.51 4.10
5026 6131 0.890542 TGCTCAGAGCCGTTGCAAAT 60.891 50.000 20.16 0.00 41.51 2.32
5027 6132 1.086696 GCTCAGAGCCGTTGCAAATA 58.913 50.000 11.84 0.00 41.13 1.40
5028 6133 1.672881 GCTCAGAGCCGTTGCAAATAT 59.327 47.619 11.84 0.00 41.13 1.28
5029 6134 2.286654 GCTCAGAGCCGTTGCAAATATC 60.287 50.000 11.84 0.00 41.13 1.63
5030 6135 3.201290 CTCAGAGCCGTTGCAAATATCT 58.799 45.455 0.00 0.00 41.13 1.98
5031 6136 4.371786 CTCAGAGCCGTTGCAAATATCTA 58.628 43.478 0.00 0.00 41.13 1.98
5032 6137 4.765273 TCAGAGCCGTTGCAAATATCTAA 58.235 39.130 0.00 0.00 41.13 2.10
5033 6138 5.182487 TCAGAGCCGTTGCAAATATCTAAA 58.818 37.500 0.00 0.00 41.13 1.85
5034 6139 5.294306 TCAGAGCCGTTGCAAATATCTAAAG 59.706 40.000 0.00 0.00 41.13 1.85
5035 6140 4.576463 AGAGCCGTTGCAAATATCTAAAGG 59.424 41.667 0.00 0.00 41.13 3.11
5036 6141 4.270008 AGCCGTTGCAAATATCTAAAGGT 58.730 39.130 0.00 0.00 41.13 3.50
5037 6142 4.335594 AGCCGTTGCAAATATCTAAAGGTC 59.664 41.667 0.00 0.00 41.13 3.85
5038 6143 4.335594 GCCGTTGCAAATATCTAAAGGTCT 59.664 41.667 0.00 0.00 37.47 3.85
5084 6190 2.065899 ACAAAAGGTGGCTGCTGTTA 57.934 45.000 0.00 0.00 0.00 2.41
5133 6239 6.587990 CACCAGAAACTATCTTGTGTAGTCTG 59.412 42.308 2.48 0.00 43.46 3.51
5167 6273 3.402110 TGACTTCATGCCAATATAGCGG 58.598 45.455 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.425193 GCGTCGACTGCAAATTCAAAATT 59.575 39.130 21.73 0.00 0.00 1.82
1 2 2.979813 GCGTCGACTGCAAATTCAAAAT 59.020 40.909 21.73 0.00 0.00 1.82
2 3 2.223363 TGCGTCGACTGCAAATTCAAAA 60.223 40.909 25.30 6.06 39.87 2.44
3 4 1.332065 TGCGTCGACTGCAAATTCAAA 59.668 42.857 25.30 6.64 39.87 2.69
4 5 0.940833 TGCGTCGACTGCAAATTCAA 59.059 45.000 25.30 7.23 39.87 2.69
5 6 0.234625 GTGCGTCGACTGCAAATTCA 59.765 50.000 27.78 9.32 45.23 2.57
6 7 0.452784 GGTGCGTCGACTGCAAATTC 60.453 55.000 27.78 18.53 45.23 2.17
7 8 1.574428 GGTGCGTCGACTGCAAATT 59.426 52.632 27.78 0.00 45.23 1.82
8 9 2.325082 GGGTGCGTCGACTGCAAAT 61.325 57.895 27.78 0.00 45.23 2.32
9 10 2.089887 TAGGGTGCGTCGACTGCAAA 62.090 55.000 27.78 15.62 45.23 3.68
10 11 2.566570 TAGGGTGCGTCGACTGCAA 61.567 57.895 27.78 15.19 45.23 4.08
11 12 2.986979 TAGGGTGCGTCGACTGCA 60.987 61.111 24.25 24.25 40.70 4.41
12 13 2.506438 GTAGGGTGCGTCGACTGC 60.506 66.667 20.46 20.46 0.00 4.40
13 14 2.181021 GGTAGGGTGCGTCGACTG 59.819 66.667 14.70 8.46 0.00 3.51
14 15 2.803155 TACGGTAGGGTGCGTCGACT 62.803 60.000 14.70 0.00 0.00 4.18
15 16 2.315038 CTACGGTAGGGTGCGTCGAC 62.315 65.000 5.18 5.18 0.00 4.20
16 17 2.046411 TACGGTAGGGTGCGTCGA 60.046 61.111 0.00 0.00 0.00 4.20
17 18 1.442526 ATCTACGGTAGGGTGCGTCG 61.443 60.000 14.82 0.00 0.00 5.12
18 19 0.310232 GATCTACGGTAGGGTGCGTC 59.690 60.000 14.82 1.82 0.00 5.19
19 20 1.105759 GGATCTACGGTAGGGTGCGT 61.106 60.000 14.82 0.00 0.00 5.24
20 21 1.658673 GGATCTACGGTAGGGTGCG 59.341 63.158 14.82 0.00 0.00 5.34
21 22 0.757935 TGGGATCTACGGTAGGGTGC 60.758 60.000 14.82 9.28 0.00 5.01
22 23 1.411612 GTTGGGATCTACGGTAGGGTG 59.588 57.143 14.82 0.00 0.00 4.61
23 24 1.007479 TGTTGGGATCTACGGTAGGGT 59.993 52.381 14.82 4.71 0.00 4.34
24 25 1.411612 GTGTTGGGATCTACGGTAGGG 59.588 57.143 14.82 0.00 0.00 3.53
25 26 2.385803 AGTGTTGGGATCTACGGTAGG 58.614 52.381 14.82 0.00 0.00 3.18
26 27 4.159879 AGAAAGTGTTGGGATCTACGGTAG 59.840 45.833 8.91 8.91 0.00 3.18
27 28 4.081862 CAGAAAGTGTTGGGATCTACGGTA 60.082 45.833 0.00 0.00 0.00 4.02
28 29 2.904434 AGAAAGTGTTGGGATCTACGGT 59.096 45.455 0.00 0.00 0.00 4.83
29 30 3.262420 CAGAAAGTGTTGGGATCTACGG 58.738 50.000 0.00 0.00 0.00 4.02
30 31 2.673368 GCAGAAAGTGTTGGGATCTACG 59.327 50.000 0.00 0.00 0.00 3.51
31 32 3.674997 TGCAGAAAGTGTTGGGATCTAC 58.325 45.455 0.00 0.00 0.00 2.59
32 33 3.307691 CCTGCAGAAAGTGTTGGGATCTA 60.308 47.826 17.39 0.00 0.00 1.98
33 34 2.553904 CCTGCAGAAAGTGTTGGGATCT 60.554 50.000 17.39 0.00 0.00 2.75
34 35 1.815003 CCTGCAGAAAGTGTTGGGATC 59.185 52.381 17.39 0.00 0.00 3.36
35 36 1.425066 TCCTGCAGAAAGTGTTGGGAT 59.575 47.619 17.39 0.00 0.00 3.85
36 37 0.843309 TCCTGCAGAAAGTGTTGGGA 59.157 50.000 17.39 0.00 0.00 4.37
37 38 1.242076 CTCCTGCAGAAAGTGTTGGG 58.758 55.000 17.39 0.00 0.00 4.12
38 39 1.972872 ACTCCTGCAGAAAGTGTTGG 58.027 50.000 17.39 0.00 0.00 3.77
39 40 5.934625 ACTAATACTCCTGCAGAAAGTGTTG 59.065 40.000 26.56 21.02 0.00 3.33
40 41 5.934625 CACTAATACTCCTGCAGAAAGTGTT 59.065 40.000 23.99 23.99 0.00 3.32
41 42 5.482908 CACTAATACTCCTGCAGAAAGTGT 58.517 41.667 23.95 17.76 0.00 3.55
42 43 4.872691 CCACTAATACTCCTGCAGAAAGTG 59.127 45.833 23.95 18.88 33.34 3.16
43 44 4.777896 TCCACTAATACTCCTGCAGAAAGT 59.222 41.667 17.39 19.58 0.00 2.66
44 45 5.344743 TCCACTAATACTCCTGCAGAAAG 57.655 43.478 17.39 14.61 0.00 2.62
45 46 5.189736 ACATCCACTAATACTCCTGCAGAAA 59.810 40.000 17.39 1.42 0.00 2.52
46 47 4.716784 ACATCCACTAATACTCCTGCAGAA 59.283 41.667 17.39 0.00 0.00 3.02
47 48 4.290093 ACATCCACTAATACTCCTGCAGA 58.710 43.478 17.39 0.00 0.00 4.26
48 49 4.679373 ACATCCACTAATACTCCTGCAG 57.321 45.455 6.78 6.78 0.00 4.41
49 50 4.469586 TCAACATCCACTAATACTCCTGCA 59.530 41.667 0.00 0.00 0.00 4.41
50 51 5.023533 TCAACATCCACTAATACTCCTGC 57.976 43.478 0.00 0.00 0.00 4.85
51 52 6.586344 ACATCAACATCCACTAATACTCCTG 58.414 40.000 0.00 0.00 0.00 3.86
52 53 6.814954 ACATCAACATCCACTAATACTCCT 57.185 37.500 0.00 0.00 0.00 3.69
53 54 7.985184 TGTTACATCAACATCCACTAATACTCC 59.015 37.037 0.00 0.00 42.29 3.85
54 55 8.942338 TGTTACATCAACATCCACTAATACTC 57.058 34.615 0.00 0.00 42.29 2.59
58 59 7.665559 AAGTGTGTTACATCAACATCCACTAAT 59.334 33.333 11.47 0.00 46.09 1.73
59 60 6.995686 AAGTGTGTTACATCAACATCCACTAA 59.004 34.615 11.47 0.00 46.09 2.24
60 61 6.426633 CAAGTGTGTTACATCAACATCCACTA 59.573 38.462 11.47 0.00 46.09 2.74
65 66 7.041372 ACTTACCAAGTGTGTTACATCAACATC 60.041 37.037 0.00 0.00 40.81 3.06
66 67 6.770785 ACTTACCAAGTGTGTTACATCAACAT 59.229 34.615 0.00 0.00 40.81 2.71
67 68 6.116806 ACTTACCAAGTGTGTTACATCAACA 58.883 36.000 0.00 0.00 41.71 3.33
68 69 6.613755 ACTTACCAAGTGTGTTACATCAAC 57.386 37.500 0.00 0.00 41.01 3.18
81 82 0.404426 GGGCCTTCCACTTACCAAGT 59.596 55.000 0.84 0.00 44.06 3.16
82 83 0.323451 GGGGCCTTCCACTTACCAAG 60.323 60.000 0.84 0.00 37.22 3.61
83 84 1.068943 TGGGGCCTTCCACTTACCAA 61.069 55.000 0.84 0.00 36.47 3.67
84 85 0.849094 ATGGGGCCTTCCACTTACCA 60.849 55.000 0.84 0.00 39.97 3.25
85 86 1.218844 TATGGGGCCTTCCACTTACC 58.781 55.000 0.84 0.00 39.97 2.85
86 87 3.117663 TCAATATGGGGCCTTCCACTTAC 60.118 47.826 0.84 0.00 39.97 2.34
87 88 3.127250 TCAATATGGGGCCTTCCACTTA 58.873 45.455 0.84 0.00 39.97 2.24
88 89 1.929494 TCAATATGGGGCCTTCCACTT 59.071 47.619 0.84 0.00 39.97 3.16
89 90 1.496429 CTCAATATGGGGCCTTCCACT 59.504 52.381 0.84 0.00 39.97 4.00
90 91 1.494721 TCTCAATATGGGGCCTTCCAC 59.505 52.381 0.84 0.00 39.97 4.02
91 92 1.776667 CTCTCAATATGGGGCCTTCCA 59.223 52.381 0.84 2.03 41.60 3.53
92 93 2.057922 TCTCTCAATATGGGGCCTTCC 58.942 52.381 0.84 0.00 0.00 3.46
93 94 3.864789 TTCTCTCAATATGGGGCCTTC 57.135 47.619 0.84 0.00 0.00 3.46
94 95 4.821532 AATTCTCTCAATATGGGGCCTT 57.178 40.909 0.84 0.00 0.00 4.35
95 96 5.930209 TTAATTCTCTCAATATGGGGCCT 57.070 39.130 0.84 0.00 0.00 5.19
96 97 6.071320 ACTTTAATTCTCTCAATATGGGGCC 58.929 40.000 0.00 0.00 0.00 5.80
97 98 7.588497 AACTTTAATTCTCTCAATATGGGGC 57.412 36.000 0.00 0.00 0.00 5.80
98 99 9.853177 ACTAACTTTAATTCTCTCAATATGGGG 57.147 33.333 0.00 0.00 0.00 4.96
139 140 9.868277 TTGGTAGCAAGGTAATTAAAAATGATG 57.132 29.630 2.54 0.00 0.00 3.07
178 179 4.144297 TGTTCACTGATTTGCTTAGGCTT 58.856 39.130 0.00 0.00 39.59 4.35
196 197 8.200792 AGATCATAGTCCACACTAAGAATGTTC 58.799 37.037 0.00 0.00 36.62 3.18
202 203 5.594725 GGTGAGATCATAGTCCACACTAAGA 59.405 44.000 0.00 0.00 38.66 2.10
225 226 1.066143 GTGTGTCTACATCCACAGGGG 60.066 57.143 0.00 0.00 41.89 4.79
228 229 5.007039 GCATTATGTGTGTCTACATCCACAG 59.993 44.000 10.92 1.69 41.89 3.66
249 250 9.765795 CATGTCATCAGTATATCTCATATGCAT 57.234 33.333 3.79 3.79 31.26 3.96
250 251 8.974238 TCATGTCATCAGTATATCTCATATGCA 58.026 33.333 0.00 0.00 31.26 3.96
251 252 9.813446 TTCATGTCATCAGTATATCTCATATGC 57.187 33.333 0.00 0.00 0.00 3.14
258 259 8.255111 TGTCCTTTCATGTCATCAGTATATCT 57.745 34.615 0.00 0.00 0.00 1.98
266 267 3.943381 GAGCATGTCCTTTCATGTCATCA 59.057 43.478 8.17 0.00 44.68 3.07
309 310 5.340439 AAGTAGAACCGACTTTGATAGGG 57.660 43.478 0.00 0.00 33.25 3.53
310 311 7.438459 CCATTAAGTAGAACCGACTTTGATAGG 59.562 40.741 0.00 0.00 38.16 2.57
311 312 8.195436 TCCATTAAGTAGAACCGACTTTGATAG 58.805 37.037 0.00 0.00 38.16 2.08
322 323 4.460948 TGGACGTCCATTAAGTAGAACC 57.539 45.455 33.23 2.93 42.01 3.62
360 362 7.692460 AGCATACATATTGGTTGATATGGTG 57.308 36.000 9.05 8.21 41.94 4.17
373 375 6.096673 TGTCACGATGGTAGCATACATATT 57.903 37.500 7.54 0.00 45.43 1.28
388 390 7.376435 TGAATTGTTTATCACATGTCACGAT 57.624 32.000 0.00 0.00 34.43 3.73
389 391 6.793492 TGAATTGTTTATCACATGTCACGA 57.207 33.333 0.00 0.00 34.43 4.35
420 422 8.444715 CACATAAACTAGCATACACGGTTTAAA 58.555 33.333 0.00 0.00 36.43 1.52
421 423 7.603404 ACACATAAACTAGCATACACGGTTTAA 59.397 33.333 0.00 0.00 36.43 1.52
424 435 5.484715 ACACATAAACTAGCATACACGGTT 58.515 37.500 0.00 0.00 0.00 4.44
427 438 6.346598 GGCATACACATAAACTAGCATACACG 60.347 42.308 0.00 0.00 0.00 4.49
430 441 7.657761 AGAAGGCATACACATAAACTAGCATAC 59.342 37.037 0.00 0.00 0.00 2.39
482 493 5.823353 TGCACATGTATGAGCATTGTTATG 58.177 37.500 11.96 0.00 46.64 1.90
494 505 5.289193 GCAAAACCTAATGTGCACATGTATG 59.711 40.000 31.98 24.08 36.56 2.39
499 510 4.333913 TTGCAAAACCTAATGTGCACAT 57.666 36.364 26.61 26.61 46.10 3.21
503 514 5.476752 TTTGTTTGCAAAACCTAATGTGC 57.523 34.783 14.67 0.00 41.15 4.57
506 517 7.244166 TGTGATTTGTTTGCAAAACCTAATG 57.756 32.000 14.67 0.00 46.23 1.90
540 551 5.880054 ATGAGCGGCCAATATAATTGTAC 57.120 39.130 2.24 0.00 0.00 2.90
543 554 5.633830 AGAATGAGCGGCCAATATAATTG 57.366 39.130 2.24 0.00 0.00 2.32
544 555 6.294731 GGAAAGAATGAGCGGCCAATATAATT 60.295 38.462 2.24 0.00 0.00 1.40
545 556 5.183904 GGAAAGAATGAGCGGCCAATATAAT 59.816 40.000 2.24 0.00 0.00 1.28
546 557 4.518970 GGAAAGAATGAGCGGCCAATATAA 59.481 41.667 2.24 0.00 0.00 0.98
547 558 4.072131 GGAAAGAATGAGCGGCCAATATA 58.928 43.478 2.24 0.00 0.00 0.86
548 559 2.887152 GGAAAGAATGAGCGGCCAATAT 59.113 45.455 2.24 0.00 0.00 1.28
585 667 0.175760 GCTTGCCAGAGTACCGATCA 59.824 55.000 0.00 0.00 0.00 2.92
587 669 0.176680 CAGCTTGCCAGAGTACCGAT 59.823 55.000 0.00 0.00 0.00 4.18
588 670 1.185618 ACAGCTTGCCAGAGTACCGA 61.186 55.000 0.00 0.00 0.00 4.69
592 674 1.067142 CCGTTACAGCTTGCCAGAGTA 60.067 52.381 0.00 0.00 0.00 2.59
595 677 0.602638 CACCGTTACAGCTTGCCAGA 60.603 55.000 0.00 0.00 0.00 3.86
598 680 1.574428 CACACCGTTACAGCTTGCC 59.426 57.895 0.00 0.00 0.00 4.52
600 682 0.865769 GACCACACCGTTACAGCTTG 59.134 55.000 0.00 0.00 0.00 4.01
603 685 2.443887 TAAGACCACACCGTTACAGC 57.556 50.000 0.00 0.00 0.00 4.40
604 686 3.176708 CGATAAGACCACACCGTTACAG 58.823 50.000 0.00 0.00 0.00 2.74
605 687 2.557924 ACGATAAGACCACACCGTTACA 59.442 45.455 0.00 0.00 0.00 2.41
609 798 3.018856 TGATACGATAAGACCACACCGT 58.981 45.455 0.00 0.00 0.00 4.83
610 799 3.314357 TCTGATACGATAAGACCACACCG 59.686 47.826 0.00 0.00 0.00 4.94
614 803 4.569761 TGCTCTGATACGATAAGACCAC 57.430 45.455 0.00 0.00 0.00 4.16
620 809 8.803235 ACTATTAACCATGCTCTGATACGATAA 58.197 33.333 0.00 0.00 0.00 1.75
628 817 5.453339 GGCTACACTATTAACCATGCTCTGA 60.453 44.000 0.00 0.00 0.00 3.27
629 818 4.752101 GGCTACACTATTAACCATGCTCTG 59.248 45.833 0.00 0.00 0.00 3.35
630 819 4.408921 TGGCTACACTATTAACCATGCTCT 59.591 41.667 0.00 0.00 0.00 4.09
631 820 4.703897 TGGCTACACTATTAACCATGCTC 58.296 43.478 0.00 0.00 0.00 4.26
632 821 4.771114 TGGCTACACTATTAACCATGCT 57.229 40.909 0.00 0.00 0.00 3.79
633 822 4.881850 AGTTGGCTACACTATTAACCATGC 59.118 41.667 1.24 0.00 0.00 4.06
634 823 5.880332 ACAGTTGGCTACACTATTAACCATG 59.120 40.000 1.24 0.00 0.00 3.66
635 824 6.062258 ACAGTTGGCTACACTATTAACCAT 57.938 37.500 1.24 0.00 0.00 3.55
636 825 5.492855 ACAGTTGGCTACACTATTAACCA 57.507 39.130 1.24 0.00 0.00 3.67
637 826 5.123344 CCAACAGTTGGCTACACTATTAACC 59.877 44.000 19.68 0.00 45.17 2.85
638 827 6.178239 CCAACAGTTGGCTACACTATTAAC 57.822 41.667 19.68 0.00 45.17 2.01
652 841 6.208644 GGCATGTTTATATAGCCAACAGTTG 58.791 40.000 6.28 6.28 44.59 3.16
653 842 6.391227 GGCATGTTTATATAGCCAACAGTT 57.609 37.500 5.33 0.00 44.59 3.16
660 849 6.600822 AGATGACATGGCATGTTTATATAGCC 59.399 38.462 31.83 16.98 45.03 3.93
661 850 7.621428 AGATGACATGGCATGTTTATATAGC 57.379 36.000 31.83 17.65 45.03 2.97
664 853 9.578576 ACTTTAGATGACATGGCATGTTTATAT 57.421 29.630 31.83 25.54 45.03 0.86
665 854 8.978874 ACTTTAGATGACATGGCATGTTTATA 57.021 30.769 31.83 20.61 45.03 0.98
666 855 7.886629 ACTTTAGATGACATGGCATGTTTAT 57.113 32.000 31.83 26.76 45.03 1.40
667 856 7.701539 AACTTTAGATGACATGGCATGTTTA 57.298 32.000 31.83 23.73 45.03 2.01
668 857 6.594788 AACTTTAGATGACATGGCATGTTT 57.405 33.333 31.83 22.56 45.03 2.83
669 858 6.183360 GCTAACTTTAGATGACATGGCATGTT 60.183 38.462 31.83 18.07 36.94 2.71
670 859 5.297776 GCTAACTTTAGATGACATGGCATGT 59.702 40.000 31.84 31.84 38.44 3.21
671 860 5.297527 TGCTAACTTTAGATGACATGGCATG 59.702 40.000 21.56 25.31 32.47 4.06
672 861 5.439721 TGCTAACTTTAGATGACATGGCAT 58.560 37.500 15.73 15.73 32.47 4.40
673 862 4.842574 TGCTAACTTTAGATGACATGGCA 58.157 39.130 2.18 2.18 32.47 4.92
674 863 6.382869 AATGCTAACTTTAGATGACATGGC 57.617 37.500 0.00 0.00 32.47 4.40
793 982 9.069078 CGTCTTCACGTGTATTTCTAGATAAAA 57.931 33.333 16.51 0.00 41.42 1.52
794 983 8.453320 TCGTCTTCACGTGTATTTCTAGATAAA 58.547 33.333 16.51 0.00 46.76 1.40
795 984 7.977904 TCGTCTTCACGTGTATTTCTAGATAA 58.022 34.615 16.51 0.00 46.76 1.75
796 985 7.543947 TCGTCTTCACGTGTATTTCTAGATA 57.456 36.000 16.51 0.00 46.76 1.98
797 986 6.432607 TCGTCTTCACGTGTATTTCTAGAT 57.567 37.500 16.51 0.00 46.76 1.98
798 987 5.673068 GCTCGTCTTCACGTGTATTTCTAGA 60.673 44.000 16.51 5.57 46.76 2.43
799 988 4.496183 GCTCGTCTTCACGTGTATTTCTAG 59.504 45.833 16.51 7.63 46.76 2.43
800 989 4.155462 AGCTCGTCTTCACGTGTATTTCTA 59.845 41.667 16.51 0.00 46.76 2.10
801 990 3.057456 AGCTCGTCTTCACGTGTATTTCT 60.057 43.478 16.51 1.41 46.76 2.52
802 991 3.243336 AGCTCGTCTTCACGTGTATTTC 58.757 45.455 16.51 3.26 46.76 2.17
803 992 3.057456 AGAGCTCGTCTTCACGTGTATTT 60.057 43.478 16.51 0.00 46.76 1.40
804 993 2.488545 AGAGCTCGTCTTCACGTGTATT 59.511 45.455 16.51 0.00 46.76 1.89
805 994 2.085320 AGAGCTCGTCTTCACGTGTAT 58.915 47.619 16.51 0.00 46.76 2.29
806 995 1.520494 AGAGCTCGTCTTCACGTGTA 58.480 50.000 16.51 4.82 46.76 2.90
807 996 0.669077 AAGAGCTCGTCTTCACGTGT 59.331 50.000 16.51 0.00 42.26 4.49
808 997 1.056103 CAAGAGCTCGTCTTCACGTG 58.944 55.000 9.94 9.94 44.28 4.49
809 998 0.669077 ACAAGAGCTCGTCTTCACGT 59.331 50.000 8.37 0.00 44.28 4.49
810 999 1.772182 AACAAGAGCTCGTCTTCACG 58.228 50.000 8.37 0.00 44.28 4.35
811 1000 3.309954 ACAAAACAAGAGCTCGTCTTCAC 59.690 43.478 8.37 0.00 44.28 3.18
812 1001 3.531538 ACAAAACAAGAGCTCGTCTTCA 58.468 40.909 8.37 0.00 44.28 3.02
813 1002 4.537936 AACAAAACAAGAGCTCGTCTTC 57.462 40.909 8.37 0.00 44.28 2.87
815 1004 3.938963 TCAAACAAAACAAGAGCTCGTCT 59.061 39.130 8.37 0.00 36.94 4.18
816 1005 4.034048 TCTCAAACAAAACAAGAGCTCGTC 59.966 41.667 8.37 0.00 0.00 4.20
817 1006 3.938963 TCTCAAACAAAACAAGAGCTCGT 59.061 39.130 8.37 1.01 0.00 4.18
818 1007 4.521943 CTCTCAAACAAAACAAGAGCTCG 58.478 43.478 8.37 0.00 0.00 5.03
822 1011 3.243535 GGGGCTCTCAAACAAAACAAGAG 60.244 47.826 0.00 0.00 37.20 2.85
823 1012 2.693074 GGGGCTCTCAAACAAAACAAGA 59.307 45.455 0.00 0.00 0.00 3.02
824 1013 2.695147 AGGGGCTCTCAAACAAAACAAG 59.305 45.455 0.00 0.00 0.00 3.16
825 1014 2.693074 GAGGGGCTCTCAAACAAAACAA 59.307 45.455 10.16 0.00 42.02 2.83
826 1015 2.306847 GAGGGGCTCTCAAACAAAACA 58.693 47.619 10.16 0.00 42.02 2.83
836 1025 3.397906 AGCAAGTGAGGGGCTCTC 58.602 61.111 7.65 7.65 42.74 3.20
839 1028 1.130054 TTGAGAGCAAGTGAGGGGCT 61.130 55.000 0.00 0.00 41.35 5.19
840 1029 0.957888 GTTGAGAGCAAGTGAGGGGC 60.958 60.000 0.00 0.00 34.01 5.80
841 1030 0.322008 GGTTGAGAGCAAGTGAGGGG 60.322 60.000 0.00 0.00 34.01 4.79
842 1031 0.397941 TGGTTGAGAGCAAGTGAGGG 59.602 55.000 0.00 0.00 34.01 4.30
843 1032 1.517242 GTGGTTGAGAGCAAGTGAGG 58.483 55.000 0.00 0.00 34.60 3.86
844 1033 1.517242 GGTGGTTGAGAGCAAGTGAG 58.483 55.000 0.00 0.00 34.60 3.51
845 1034 0.249868 CGGTGGTTGAGAGCAAGTGA 60.250 55.000 0.00 0.00 34.60 3.41
846 1035 1.230635 CCGGTGGTTGAGAGCAAGTG 61.231 60.000 0.00 0.00 34.60 3.16
847 1036 1.071471 CCGGTGGTTGAGAGCAAGT 59.929 57.895 0.00 0.00 34.60 3.16
848 1037 2.328099 GCCGGTGGTTGAGAGCAAG 61.328 63.158 1.90 0.00 34.60 4.01
849 1038 2.281484 GCCGGTGGTTGAGAGCAA 60.281 61.111 1.90 0.00 34.60 3.91
850 1039 4.680237 CGCCGGTGGTTGAGAGCA 62.680 66.667 7.26 0.00 0.00 4.26
851 1040 3.876589 TTCGCCGGTGGTTGAGAGC 62.877 63.158 16.49 0.00 0.00 4.09
852 1041 1.738099 CTTCGCCGGTGGTTGAGAG 60.738 63.158 16.49 0.46 0.00 3.20
881 1070 1.738099 CTTTGTCGCCCTGTCGAGG 60.738 63.158 0.00 0.00 39.34 4.63
885 1074 0.586802 GTTGACTTTGTCGCCCTGTC 59.413 55.000 0.00 0.00 34.95 3.51
889 1078 2.613506 CGGGTTGACTTTGTCGCCC 61.614 63.158 15.39 15.39 42.63 6.13
890 1079 2.613506 CCGGGTTGACTTTGTCGCC 61.614 63.158 0.00 0.00 34.95 5.54
892 1081 1.841663 CTGCCGGGTTGACTTTGTCG 61.842 60.000 2.18 0.00 34.95 4.35
894 1083 2.193536 GCTGCCGGGTTGACTTTGT 61.194 57.895 2.18 0.00 0.00 2.83
896 1085 2.978010 CGCTGCCGGGTTGACTTT 60.978 61.111 2.18 0.00 0.00 2.66
976 1175 2.689034 GGGTCAGTGGGGGAGGAG 60.689 72.222 0.00 0.00 0.00 3.69
977 1176 3.537506 TGGGTCAGTGGGGGAGGA 61.538 66.667 0.00 0.00 0.00 3.71
978 1177 3.330720 GTGGGTCAGTGGGGGAGG 61.331 72.222 0.00 0.00 0.00 4.30
1463 1714 1.967319 AAGCGCAAAAGGTCTCAGAA 58.033 45.000 11.47 0.00 0.00 3.02
1602 1857 1.276138 GGGTTTCTTGATGCAAAGGGG 59.724 52.381 0.00 0.00 0.00 4.79
1682 1937 0.098552 TGCAGCAACAACTCACAACG 59.901 50.000 0.00 0.00 0.00 4.10
1702 1957 0.605319 GCTCGGGGTGACACAATTGA 60.605 55.000 13.59 0.00 0.00 2.57
1732 1987 0.608640 ATCTCCAAGTCCACACGACC 59.391 55.000 0.00 0.00 43.08 4.79
1736 1991 2.693069 CACAGATCTCCAAGTCCACAC 58.307 52.381 0.00 0.00 0.00 3.82
1801 2064 1.626825 CTTTTTGGGACGGAGGGAGTA 59.373 52.381 0.00 0.00 0.00 2.59
1802 2065 0.400594 CTTTTTGGGACGGAGGGAGT 59.599 55.000 0.00 0.00 0.00 3.85
1803 2066 0.960861 GCTTTTTGGGACGGAGGGAG 60.961 60.000 0.00 0.00 0.00 4.30
1804 2067 1.074248 GCTTTTTGGGACGGAGGGA 59.926 57.895 0.00 0.00 0.00 4.20
1805 2068 0.539669 AAGCTTTTTGGGACGGAGGG 60.540 55.000 0.00 0.00 0.00 4.30
1806 2069 0.598065 CAAGCTTTTTGGGACGGAGG 59.402 55.000 0.00 0.00 0.00 4.30
1807 2070 1.318576 ACAAGCTTTTTGGGACGGAG 58.681 50.000 0.00 0.00 0.00 4.63
1808 2071 1.679153 GAACAAGCTTTTTGGGACGGA 59.321 47.619 1.80 0.00 0.00 4.69
1809 2072 1.269569 GGAACAAGCTTTTTGGGACGG 60.270 52.381 1.80 0.00 0.00 4.79
1810 2073 1.681264 AGGAACAAGCTTTTTGGGACG 59.319 47.619 1.80 0.00 0.00 4.79
1811 2074 2.693074 TGAGGAACAAGCTTTTTGGGAC 59.307 45.455 1.80 0.00 0.00 4.46
1812 2075 3.025322 TGAGGAACAAGCTTTTTGGGA 57.975 42.857 1.80 0.00 0.00 4.37
1813 2076 3.817709 TTGAGGAACAAGCTTTTTGGG 57.182 42.857 1.80 0.00 34.20 4.12
1814 2077 4.512571 CCATTTGAGGAACAAGCTTTTTGG 59.487 41.667 1.80 0.00 39.77 3.28
1815 2078 5.234972 GTCCATTTGAGGAACAAGCTTTTTG 59.765 40.000 1.80 0.00 39.92 2.44
1816 2079 5.359756 GTCCATTTGAGGAACAAGCTTTTT 58.640 37.500 0.00 0.00 39.92 1.94
1817 2080 4.499696 CGTCCATTTGAGGAACAAGCTTTT 60.500 41.667 0.00 0.00 39.92 2.27
1818 2081 3.004734 CGTCCATTTGAGGAACAAGCTTT 59.995 43.478 0.00 0.00 39.92 3.51
1819 2082 2.554032 CGTCCATTTGAGGAACAAGCTT 59.446 45.455 0.00 0.00 39.92 3.74
1820 2083 2.154462 CGTCCATTTGAGGAACAAGCT 58.846 47.619 0.00 0.00 39.92 3.74
1821 2084 1.880027 ACGTCCATTTGAGGAACAAGC 59.120 47.619 0.00 0.00 39.92 4.01
1822 2085 5.178797 AGATACGTCCATTTGAGGAACAAG 58.821 41.667 0.00 0.00 39.92 3.16
1823 2086 5.160607 AGATACGTCCATTTGAGGAACAA 57.839 39.130 0.00 0.00 39.92 2.83
1824 2087 4.819105 AGATACGTCCATTTGAGGAACA 57.181 40.909 0.00 0.00 39.92 3.18
1825 2088 4.745620 GCTAGATACGTCCATTTGAGGAAC 59.254 45.833 0.00 0.00 39.92 3.62
1826 2089 4.404394 TGCTAGATACGTCCATTTGAGGAA 59.596 41.667 0.00 0.00 39.92 3.36
1827 2090 3.958147 TGCTAGATACGTCCATTTGAGGA 59.042 43.478 0.00 0.00 34.64 3.71
1828 2091 4.051922 GTGCTAGATACGTCCATTTGAGG 58.948 47.826 0.00 0.00 34.98 3.86
1829 2092 4.938080 AGTGCTAGATACGTCCATTTGAG 58.062 43.478 0.00 0.00 0.00 3.02
1830 2093 6.096423 AGTTAGTGCTAGATACGTCCATTTGA 59.904 38.462 0.00 0.00 0.00 2.69
1831 2094 6.273825 AGTTAGTGCTAGATACGTCCATTTG 58.726 40.000 0.00 0.00 0.00 2.32
1832 2095 6.466885 AGTTAGTGCTAGATACGTCCATTT 57.533 37.500 0.00 0.00 0.00 2.32
1833 2096 6.096423 TCAAGTTAGTGCTAGATACGTCCATT 59.904 38.462 0.00 0.00 0.00 3.16
1834 2097 5.593095 TCAAGTTAGTGCTAGATACGTCCAT 59.407 40.000 0.00 0.00 0.00 3.41
1835 2098 4.945543 TCAAGTTAGTGCTAGATACGTCCA 59.054 41.667 0.00 0.00 0.00 4.02
1836 2099 5.496133 TCAAGTTAGTGCTAGATACGTCC 57.504 43.478 0.00 0.00 0.00 4.79
1837 2100 5.399892 GCATCAAGTTAGTGCTAGATACGTC 59.600 44.000 0.00 0.00 36.02 4.34
1838 2101 5.067936 AGCATCAAGTTAGTGCTAGATACGT 59.932 40.000 11.30 0.00 46.54 3.57
1839 2102 5.524284 AGCATCAAGTTAGTGCTAGATACG 58.476 41.667 11.30 0.00 46.54 3.06
1845 2108 7.582667 TGTATCTAGCATCAAGTTAGTGCTA 57.417 36.000 16.22 16.22 46.54 3.49
1847 2110 7.439356 TGAATGTATCTAGCATCAAGTTAGTGC 59.561 37.037 4.02 4.02 39.10 4.40
1848 2111 8.877808 TGAATGTATCTAGCATCAAGTTAGTG 57.122 34.615 0.00 0.00 33.25 2.74
1852 2115 9.399797 TCAAATGAATGTATCTAGCATCAAGTT 57.600 29.630 0.00 0.00 0.00 2.66
1853 2116 8.969260 TCAAATGAATGTATCTAGCATCAAGT 57.031 30.769 0.00 0.00 0.00 3.16
1854 2117 8.504815 CCTCAAATGAATGTATCTAGCATCAAG 58.495 37.037 0.00 0.00 0.00 3.02
1855 2118 7.446319 CCCTCAAATGAATGTATCTAGCATCAA 59.554 37.037 0.00 0.00 0.00 2.57
1856 2119 6.938596 CCCTCAAATGAATGTATCTAGCATCA 59.061 38.462 0.00 0.00 0.00 3.07
1857 2120 7.118971 GTCCCTCAAATGAATGTATCTAGCATC 59.881 40.741 0.00 0.00 0.00 3.91
1858 2121 6.939163 GTCCCTCAAATGAATGTATCTAGCAT 59.061 38.462 0.00 0.00 0.00 3.79
1859 2122 6.291377 GTCCCTCAAATGAATGTATCTAGCA 58.709 40.000 0.00 0.00 0.00 3.49
1860 2123 5.406780 CGTCCCTCAAATGAATGTATCTAGC 59.593 44.000 0.00 0.00 0.00 3.42
1861 2124 6.749139 TCGTCCCTCAAATGAATGTATCTAG 58.251 40.000 0.00 0.00 0.00 2.43
1862 2125 6.724893 TCGTCCCTCAAATGAATGTATCTA 57.275 37.500 0.00 0.00 0.00 1.98
1863 2126 5.605534 CTCGTCCCTCAAATGAATGTATCT 58.394 41.667 0.00 0.00 0.00 1.98
1864 2127 4.212214 GCTCGTCCCTCAAATGAATGTATC 59.788 45.833 0.00 0.00 0.00 2.24
1865 2128 4.130118 GCTCGTCCCTCAAATGAATGTAT 58.870 43.478 0.00 0.00 0.00 2.29
1866 2129 3.197766 AGCTCGTCCCTCAAATGAATGTA 59.802 43.478 0.00 0.00 0.00 2.29
1867 2130 2.026822 AGCTCGTCCCTCAAATGAATGT 60.027 45.455 0.00 0.00 0.00 2.71
1868 2131 2.636830 AGCTCGTCCCTCAAATGAATG 58.363 47.619 0.00 0.00 0.00 2.67
1869 2132 3.356529 AAGCTCGTCCCTCAAATGAAT 57.643 42.857 0.00 0.00 0.00 2.57
1870 2133 2.859165 AAGCTCGTCCCTCAAATGAA 57.141 45.000 0.00 0.00 0.00 2.57
1871 2134 2.859165 AAAGCTCGTCCCTCAAATGA 57.141 45.000 0.00 0.00 0.00 2.57
1872 2135 3.667960 CGAAAAAGCTCGTCCCTCAAATG 60.668 47.826 0.00 0.00 34.08 2.32
1873 2136 2.484264 CGAAAAAGCTCGTCCCTCAAAT 59.516 45.455 0.00 0.00 34.08 2.32
1874 2137 1.871039 CGAAAAAGCTCGTCCCTCAAA 59.129 47.619 0.00 0.00 34.08 2.69
1875 2138 1.508632 CGAAAAAGCTCGTCCCTCAA 58.491 50.000 0.00 0.00 34.08 3.02
1876 2139 0.320421 CCGAAAAAGCTCGTCCCTCA 60.320 55.000 0.00 0.00 37.11 3.86
1877 2140 0.037605 TCCGAAAAAGCTCGTCCCTC 60.038 55.000 0.00 0.00 37.11 4.30
1878 2141 0.320508 GTCCGAAAAAGCTCGTCCCT 60.321 55.000 0.00 0.00 37.11 4.20
1879 2142 1.623973 CGTCCGAAAAAGCTCGTCCC 61.624 60.000 0.00 0.00 37.11 4.46
1880 2143 1.623973 CCGTCCGAAAAAGCTCGTCC 61.624 60.000 0.00 0.00 37.11 4.79
1881 2144 0.942884 ACCGTCCGAAAAAGCTCGTC 60.943 55.000 0.00 0.00 37.11 4.20
1882 2145 1.068585 ACCGTCCGAAAAAGCTCGT 59.931 52.632 0.00 0.00 37.11 4.18
1883 2146 1.491563 CACCGTCCGAAAAAGCTCG 59.508 57.895 0.00 0.00 38.58 5.03
1884 2147 1.574702 CCCACCGTCCGAAAAAGCTC 61.575 60.000 0.00 0.00 0.00 4.09
1885 2148 1.599797 CCCACCGTCCGAAAAAGCT 60.600 57.895 0.00 0.00 0.00 3.74
1886 2149 1.574702 CTCCCACCGTCCGAAAAAGC 61.575 60.000 0.00 0.00 0.00 3.51
1887 2150 0.250166 ACTCCCACCGTCCGAAAAAG 60.250 55.000 0.00 0.00 0.00 2.27
1888 2151 1.047002 TACTCCCACCGTCCGAAAAA 58.953 50.000 0.00 0.00 0.00 1.94
1889 2152 1.269012 ATACTCCCACCGTCCGAAAA 58.731 50.000 0.00 0.00 0.00 2.29
1890 2153 2.142356 TATACTCCCACCGTCCGAAA 57.858 50.000 0.00 0.00 0.00 3.46
1891 2154 2.369983 ATATACTCCCACCGTCCGAA 57.630 50.000 0.00 0.00 0.00 4.30
1892 2155 3.726557 ATATATACTCCCACCGTCCGA 57.273 47.619 0.00 0.00 0.00 4.55
1893 2156 4.491676 CAAATATATACTCCCACCGTCCG 58.508 47.826 0.00 0.00 0.00 4.79
1894 2157 4.251268 GCAAATATATACTCCCACCGTCC 58.749 47.826 0.00 0.00 0.00 4.79
1895 2158 4.251268 GGCAAATATATACTCCCACCGTC 58.749 47.826 0.00 0.00 0.00 4.79
1896 2159 3.008704 GGGCAAATATATACTCCCACCGT 59.991 47.826 9.87 0.00 34.01 4.83
1897 2160 3.008594 TGGGCAAATATATACTCCCACCG 59.991 47.826 12.33 0.00 38.72 4.94
1898 2161 4.650972 TGGGCAAATATATACTCCCACC 57.349 45.455 12.33 0.00 38.72 4.61
1899 2162 7.285401 CCAATATGGGCAAATATATACTCCCAC 59.715 40.741 16.52 0.00 45.47 4.61
1900 2163 7.036205 ACCAATATGGGCAAATATATACTCCCA 60.036 37.037 16.52 16.52 46.55 4.37
1901 2164 7.354312 ACCAATATGGGCAAATATATACTCCC 58.646 38.462 0.00 8.43 43.37 4.30
1959 2222 6.414732 ACCGACCAAAGAGATGAATATTTGA 58.585 36.000 0.00 0.00 35.19 2.69
1964 2227 6.234920 TCAAAACCGACCAAAGAGATGAATA 58.765 36.000 0.00 0.00 0.00 1.75
1968 2231 5.376854 AATCAAAACCGACCAAAGAGATG 57.623 39.130 0.00 0.00 0.00 2.90
2128 2392 8.514330 TTTACCTATTTTCACGGAGCATAAAT 57.486 30.769 0.00 0.00 0.00 1.40
2161 2426 7.547227 ACTGTCATCAAATTAATAAAGCACCC 58.453 34.615 0.00 0.00 0.00 4.61
2186 2451 3.820467 CTCACAGTGGGCACTTCATTTTA 59.180 43.478 0.00 0.00 40.20 1.52
2195 2460 0.875059 GCTAAACTCACAGTGGGCAC 59.125 55.000 0.00 0.00 0.00 5.01
2198 2463 4.074970 AGAATTGCTAAACTCACAGTGGG 58.925 43.478 0.00 0.00 0.00 4.61
2230 2495 5.752712 CAAGAGCAAAAAGTAAGTGGAGTC 58.247 41.667 0.00 0.00 0.00 3.36
2313 2581 4.508551 TTCACCATGGCAAGACTATCAT 57.491 40.909 13.04 0.00 0.00 2.45
2432 2701 4.201657 CAGATGAATGGCCTGTGAATACA 58.798 43.478 3.32 0.00 35.08 2.29
2651 2920 2.902343 GGGGCCAGCAGTATTCGC 60.902 66.667 4.39 0.00 0.00 4.70
2672 2941 5.111989 TGAATTTGTTCTCTAGAGGATGCG 58.888 41.667 19.67 0.00 0.00 4.73
2699 2968 4.141937 TGAGGAGATAACCAATCCAGAACG 60.142 45.833 0.00 0.00 34.90 3.95
2866 3135 4.652421 TGTACGGGGATAGCTCAATAAAGT 59.348 41.667 0.00 0.00 0.00 2.66
2937 3206 3.812053 ACAGCATCTGAGTTTGTGAGAAC 59.188 43.478 0.29 0.00 35.18 3.01
3124 3393 1.075212 TCCCATTCATCTGTGTGCCAA 59.925 47.619 0.00 0.00 0.00 4.52
3128 3397 1.741706 GCTGTCCCATTCATCTGTGTG 59.258 52.381 0.00 0.00 0.00 3.82
3130 3399 2.118313 TGCTGTCCCATTCATCTGTG 57.882 50.000 0.00 0.00 0.00 3.66
3388 3659 7.159372 AGTAACTGGAGAATTGTGTTATCGTT 58.841 34.615 0.00 0.00 0.00 3.85
3389 3660 6.698380 AGTAACTGGAGAATTGTGTTATCGT 58.302 36.000 0.00 0.00 0.00 3.73
3575 3846 6.772716 TCTTTGCTTGGTTTATCTCTCTTTGT 59.227 34.615 0.00 0.00 0.00 2.83
3744 4015 1.243902 CAAAAGCCGGCTAGTTCCAA 58.756 50.000 33.07 0.00 0.00 3.53
4100 4371 0.829333 ATCCAAGTGCATCGCTCTCT 59.171 50.000 0.00 0.00 30.88 3.10
4217 4488 1.900585 GCACAAGTCTCGCGATGCAA 61.901 55.000 21.54 1.30 33.27 4.08
4259 4530 1.959042 AATGGCTACCTCATCAAGCG 58.041 50.000 0.00 0.00 37.11 4.68
4262 4533 2.503765 TCGGAAATGGCTACCTCATCAA 59.496 45.455 0.00 0.00 0.00 2.57
4268 4539 5.153950 GATTAGATCGGAAATGGCTACCT 57.846 43.478 0.00 0.00 0.00 3.08
4289 4560 2.031012 CAGTGCCAGCAGTTCCGA 59.969 61.111 0.00 0.00 0.00 4.55
4301 4572 3.808728 TCAGGCTTACAATATCCAGTGC 58.191 45.455 0.00 0.00 0.00 4.40
4305 4576 5.425217 TGAGAGTTCAGGCTTACAATATCCA 59.575 40.000 0.00 0.00 0.00 3.41
4326 4597 8.087982 ACTACACACAAATGACTTTACATGAG 57.912 34.615 0.00 0.00 0.00 2.90
4359 4630 8.814038 AGCATTTTAAATAGTCTGTTCATCCT 57.186 30.769 0.00 0.00 0.00 3.24
4419 4692 4.698780 ACTTTGGTAAGGCGAGATAAAACC 59.301 41.667 0.00 0.00 35.61 3.27
4453 4726 4.269183 CATTGTGGTTGTAGATGCCCTTA 58.731 43.478 0.00 0.00 0.00 2.69
4454 4727 2.969821 TTGTGGTTGTAGATGCCCTT 57.030 45.000 0.00 0.00 0.00 3.95
4502 5563 3.732892 AAAACGGGCGCCATGTCG 61.733 61.111 30.85 24.40 0.00 4.35
4505 5566 2.126502 GTCAAAACGGGCGCCATG 60.127 61.111 30.85 22.57 0.00 3.66
4507 5568 4.572571 AGGTCAAAACGGGCGCCA 62.573 61.111 30.85 1.46 0.00 5.69
4508 5569 3.733960 GAGGTCAAAACGGGCGCC 61.734 66.667 21.18 21.18 0.00 6.53
4510 5571 3.053896 GGGAGGTCAAAACGGGCG 61.054 66.667 0.00 0.00 0.00 6.13
4511 5572 0.034863 TATGGGAGGTCAAAACGGGC 60.035 55.000 0.00 0.00 0.00 6.13
4523 5592 6.152661 TGGTTGTTTAGCAGAAAATATGGGAG 59.847 38.462 0.00 0.00 0.00 4.30
4524 5593 6.013379 TGGTTGTTTAGCAGAAAATATGGGA 58.987 36.000 0.00 0.00 0.00 4.37
4539 5608 5.304101 ACAATTTGAGGAGCATGGTTGTTTA 59.696 36.000 2.79 0.00 0.00 2.01
4570 5639 5.300539 TGTGCTTGTCAAAATGCCTTAACTA 59.699 36.000 0.00 0.00 0.00 2.24
4594 5663 1.437772 CTCGCGAGGTCGGATACAGT 61.438 60.000 28.40 0.00 40.23 3.55
4595 5664 1.158484 TCTCGCGAGGTCGGATACAG 61.158 60.000 33.98 6.76 40.23 2.74
4611 5680 0.383124 GTTTGTCGTTGCGTGCTCTC 60.383 55.000 0.00 0.00 0.00 3.20
4681 5754 7.225931 GTCATCTTAGTGGTTACAACAACAGAA 59.774 37.037 2.60 0.00 35.23 3.02
4685 5758 5.180680 GGGTCATCTTAGTGGTTACAACAAC 59.819 44.000 0.00 0.00 32.87 3.32
4691 5764 4.335594 GCAATGGGTCATCTTAGTGGTTAC 59.664 45.833 0.00 0.00 0.00 2.50
4693 5766 3.245229 TGCAATGGGTCATCTTAGTGGTT 60.245 43.478 0.00 0.00 0.00 3.67
4694 5767 2.308570 TGCAATGGGTCATCTTAGTGGT 59.691 45.455 0.00 0.00 0.00 4.16
4696 5769 2.684881 GGTGCAATGGGTCATCTTAGTG 59.315 50.000 0.00 0.00 0.00 2.74
4715 5788 2.173519 CTCACCCTTTGCATCATTGGT 58.826 47.619 0.00 0.00 0.00 3.67
4722 5795 1.542492 CTTGCTCTCACCCTTTGCAT 58.458 50.000 0.00 0.00 33.50 3.96
4723 5796 1.174712 GCTTGCTCTCACCCTTTGCA 61.175 55.000 0.00 0.00 0.00 4.08
4732 5805 6.237901 TCTTTAAATACTTGGCTTGCTCTCA 58.762 36.000 0.00 0.00 0.00 3.27
4776 5873 7.645058 ATTTCCATATGTTTCAATCCGTCTT 57.355 32.000 1.24 0.00 0.00 3.01
4935 6040 7.482169 ACACTTTAGACCTCATTATGACTGA 57.518 36.000 0.00 0.00 0.00 3.41
4936 6041 8.251026 TGTACACTTTAGACCTCATTATGACTG 58.749 37.037 0.00 0.00 0.00 3.51
4937 6042 8.362464 TGTACACTTTAGACCTCATTATGACT 57.638 34.615 0.00 0.00 0.00 3.41
4939 6044 7.710907 GCATGTACACTTTAGACCTCATTATGA 59.289 37.037 0.00 0.00 0.00 2.15
4940 6045 7.495606 TGCATGTACACTTTAGACCTCATTATG 59.504 37.037 0.00 0.00 0.00 1.90
4941 6046 7.564793 TGCATGTACACTTTAGACCTCATTAT 58.435 34.615 0.00 0.00 0.00 1.28
5017 6122 8.879759 TCTTTAGACCTTTAGATATTTGCAACG 58.120 33.333 0.00 0.00 0.00 4.10
5052 6157 6.207810 AGCCACCTTTTGTTTCGTATCAATTA 59.792 34.615 0.00 0.00 0.00 1.40
5084 6190 7.285858 GTGACCTTCAGTCTATATGTCCTAACT 59.714 40.741 0.00 0.00 46.46 2.24
5167 6273 5.695851 TTGAAGAATTGAAGCAGAGGTTC 57.304 39.130 2.24 2.24 40.03 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.