Multiple sequence alignment - TraesCS5A01G202100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G202100 chr5A 100.000 6600 0 0 1 6600 408908658 408915257 0.000000e+00 12189.0
1 TraesCS5A01G202100 chr5D 92.743 4065 176 46 2051 6053 314847666 314851673 0.000000e+00 5762.0
2 TraesCS5A01G202100 chr5D 92.570 1171 37 22 779 1931 314846428 314847566 0.000000e+00 1635.0
3 TraesCS5A01G202100 chr5D 85.009 527 68 9 1 522 314845665 314846185 5.860000e-145 525.0
4 TraesCS5A01G202100 chr5D 90.943 265 14 6 6065 6321 314877622 314877884 1.360000e-91 348.0
5 TraesCS5A01G202100 chr5D 87.726 277 28 6 6326 6600 314878007 314878279 1.070000e-82 318.0
6 TraesCS5A01G202100 chr5D 87.209 172 8 5 623 793 314846254 314846412 4.060000e-42 183.0
7 TraesCS5A01G202100 chr5D 98.571 70 1 0 1928 1997 251307797 251307866 2.500000e-24 124.0
8 TraesCS5A01G202100 chr5D 97.297 37 1 0 2002 2038 315925629 315925593 5.530000e-06 63.9
9 TraesCS5A01G202100 chr5B 92.752 2925 131 30 2062 4937 362841627 362844519 0.000000e+00 4152.0
10 TraesCS5A01G202100 chr5B 90.057 1740 110 33 1 1717 362839556 362841255 0.000000e+00 2196.0
11 TraesCS5A01G202100 chr5B 93.291 1431 55 18 4920 6321 362844701 362846119 0.000000e+00 2073.0
12 TraesCS5A01G202100 chr5B 89.377 273 21 7 6330 6600 362846247 362846513 2.950000e-88 337.0
13 TraesCS5A01G202100 chr5B 97.183 71 2 0 1928 1998 400094433 400094363 3.230000e-23 121.0
14 TraesCS5A01G202100 chr1A 81.955 266 43 4 3615 3877 385658697 385658960 3.100000e-53 220.0
15 TraesCS5A01G202100 chr1A 94.737 76 3 1 1927 2001 333871391 333871316 4.180000e-22 117.0
16 TraesCS5A01G202100 chr3A 86.822 129 17 0 2719 2847 145611597 145611725 1.920000e-30 145.0
17 TraesCS5A01G202100 chr3A 89.130 92 6 4 1932 2022 264038360 264038448 1.950000e-20 111.0
18 TraesCS5A01G202100 chr3A 92.683 41 3 0 1998 2038 712187243 712187283 7.150000e-05 60.2
19 TraesCS5A01G202100 chr3A 100.000 29 0 0 325 353 571412315 571412343 3.000000e-03 54.7
20 TraesCS5A01G202100 chr3B 98.630 73 1 0 1928 2000 556538513 556538585 5.370000e-26 130.0
21 TraesCS5A01G202100 chr3B 95.122 41 1 1 2000 2039 817823408 817823448 5.530000e-06 63.9
22 TraesCS5A01G202100 chr3B 92.683 41 3 0 325 365 565730125 565730165 7.150000e-05 60.2
23 TraesCS5A01G202100 chr4B 97.183 71 2 0 1928 1998 206799982 206800052 3.230000e-23 121.0
24 TraesCS5A01G202100 chr4B 94.667 75 4 0 1924 1998 446337662 446337588 4.180000e-22 117.0
25 TraesCS5A01G202100 chr3D 93.671 79 3 2 1928 2004 5879445 5879367 4.180000e-22 117.0
26 TraesCS5A01G202100 chr3D 95.122 41 1 1 2000 2039 608067674 608067714 5.530000e-06 63.9
27 TraesCS5A01G202100 chr7D 94.667 75 3 1 1924 1998 175941736 175941809 1.500000e-21 115.0
28 TraesCS5A01G202100 chr7B 97.297 37 1 0 2000 2036 296324292 296324328 5.530000e-06 63.9
29 TraesCS5A01G202100 chr7B 97.297 37 1 0 2000 2036 717558219 717558183 5.530000e-06 63.9
30 TraesCS5A01G202100 chr4D 97.297 37 1 0 2000 2036 323574871 323574835 5.530000e-06 63.9
31 TraesCS5A01G202100 chr4A 97.297 37 1 0 2000 2036 148133003 148133039 5.530000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G202100 chr5A 408908658 408915257 6599 False 12189.00 12189 100.00000 1 6600 1 chr5A.!!$F1 6599
1 TraesCS5A01G202100 chr5D 314845665 314851673 6008 False 2026.25 5762 89.38275 1 6053 4 chr5D.!!$F2 6052
2 TraesCS5A01G202100 chr5D 314877622 314878279 657 False 333.00 348 89.33450 6065 6600 2 chr5D.!!$F3 535
3 TraesCS5A01G202100 chr5B 362839556 362846513 6957 False 2189.50 4152 91.36925 1 6600 4 chr5B.!!$F1 6599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 779 0.249120 CGTGCCCAACTAGATCCACA 59.751 55.0 0.00 0.00 0.00 4.17 F
1789 1927 0.736325 CAGCTACCGGTGAACTTCCG 60.736 60.0 19.93 0.00 46.49 4.30 F
2374 2552 0.036671 TGATCTGCACTGGACAGCTG 60.037 55.0 13.48 13.48 35.04 4.24 F
2593 2776 0.107752 GGGAGGAAGAAGCAGAGCTG 60.108 60.0 0.00 0.00 39.62 4.24 F
3559 3773 0.248296 TCGTTGCGAAAAACTGGCAC 60.248 50.0 0.00 0.00 36.23 5.01 F
4673 4902 0.381801 GCAGTGTGGTGGTTTCTGTG 59.618 55.0 0.00 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2355 2533 0.036671 CAGCTGTCCAGTGCAGATCA 60.037 55.0 5.25 0.0 36.12 2.92 R
3018 3201 0.039256 CTGCAACCCAAACATCACCG 60.039 55.0 0.00 0.0 0.00 4.94 R
3543 3757 0.528017 TGTGTGCCAGTTTTTCGCAA 59.472 45.0 0.00 0.0 33.57 4.85 R
4494 4723 0.521291 TCGCAGCATAAAGTGGTTGC 59.479 50.0 0.00 0.0 36.12 4.17 R
4760 4991 1.048160 CCAACAAAAGGCCCCACAGT 61.048 55.0 0.00 0.0 0.00 3.55 R
6434 7019 0.251474 TGCTCTGGGCTCAAATGCTT 60.251 50.0 0.00 0.0 42.39 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.627945 TCTCACTGAAAGCACGTGTTT 58.372 42.857 18.38 15.29 37.60 2.83
70 72 4.287238 AGCACGTGTTTCAGTTAAAAGG 57.713 40.909 18.38 0.00 0.00 3.11
124 126 6.594744 TGTGATATGAATACATGGCAACTCT 58.405 36.000 0.00 0.00 37.87 3.24
126 128 7.874528 TGTGATATGAATACATGGCAACTCTAG 59.125 37.037 0.00 0.00 37.87 2.43
130 132 6.239217 TGAATACATGGCAACTCTAGACAT 57.761 37.500 0.00 0.00 37.61 3.06
175 177 6.070251 TGGCATGAGGATGAGAACTTTAGTTA 60.070 38.462 0.00 0.00 38.56 2.24
219 222 7.826260 TTTGGATGACAAGTTTCAGTTTTTC 57.174 32.000 0.00 0.00 40.82 2.29
223 226 8.352201 TGGATGACAAGTTTCAGTTTTTCTATG 58.648 33.333 0.00 0.00 0.00 2.23
226 229 8.275015 TGACAAGTTTCAGTTTTTCTATGTGA 57.725 30.769 0.00 0.00 0.00 3.58
310 315 2.223021 CGTGTGACGCTTATCATTTGGG 60.223 50.000 0.00 0.00 33.65 4.12
316 321 6.016192 TGTGACGCTTATCATTTGGGTAAAAA 60.016 34.615 0.00 0.00 0.00 1.94
458 465 8.848528 GTTAGACGAGACTTTATTAGTTCACAC 58.151 37.037 0.00 0.00 37.17 3.82
459 466 6.978338 AGACGAGACTTTATTAGTTCACACA 58.022 36.000 0.00 0.00 37.17 3.72
463 470 6.455646 CGAGACTTTATTAGTTCACACATGCC 60.456 42.308 0.00 0.00 37.17 4.40
474 481 2.679336 TCACACATGCCATCTTCATTCG 59.321 45.455 0.00 0.00 0.00 3.34
482 489 7.325338 CACATGCCATCTTCATTCGAAAATATC 59.675 37.037 0.00 0.00 0.00 1.63
483 490 7.230108 ACATGCCATCTTCATTCGAAAATATCT 59.770 33.333 0.00 0.00 0.00 1.98
484 491 7.572523 TGCCATCTTCATTCGAAAATATCTT 57.427 32.000 0.00 0.00 0.00 2.40
516 523 6.625873 GCTAAGCTAGCCTATCAAAATGTT 57.374 37.500 12.13 0.00 45.95 2.71
528 535 8.178313 GCCTATCAAAATGTTTTGTACTCTCTC 58.822 37.037 15.51 0.14 45.77 3.20
579 587 8.068892 ACTCTTATAGTTGTTTACAGAGGGAG 57.931 38.462 0.00 0.00 33.35 4.30
588 596 8.101419 AGTTGTTTACAGAGGGAGTATTTTAGG 58.899 37.037 0.00 0.00 0.00 2.69
597 605 6.067781 AGAGGGAGTATTTTAGGAGGAGGTAA 60.068 42.308 0.00 0.00 0.00 2.85
732 779 0.249120 CGTGCCCAACTAGATCCACA 59.751 55.000 0.00 0.00 0.00 4.17
852 936 4.753877 CTCGCCGCGACGAACAGA 62.754 66.667 19.93 0.00 42.39 3.41
953 1037 4.798682 GCGGGGAAGGGAGGGAGA 62.799 72.222 0.00 0.00 0.00 3.71
1431 1520 5.121611 TGTGTAGTTGCTAATTCATTCCGTG 59.878 40.000 0.00 0.00 0.00 4.94
1482 1571 5.415701 TCGTTTGAGGGGTATATCCGTATAC 59.584 44.000 0.00 0.00 41.20 1.47
1542 1631 2.935201 GGAAGAGTTGCTCTAGTGCATG 59.065 50.000 19.39 0.00 40.28 4.06
1623 1719 6.940298 GCTTGCTAATTGTGTAGGGGATAATA 59.060 38.462 0.00 0.00 0.00 0.98
1625 1721 7.865530 TGCTAATTGTGTAGGGGATAATAGA 57.134 36.000 0.00 0.00 0.00 1.98
1626 1722 8.270137 TGCTAATTGTGTAGGGGATAATAGAA 57.730 34.615 0.00 0.00 0.00 2.10
1627 1723 8.154856 TGCTAATTGTGTAGGGGATAATAGAAC 58.845 37.037 0.00 0.00 0.00 3.01
1628 1724 8.376270 GCTAATTGTGTAGGGGATAATAGAACT 58.624 37.037 0.00 0.00 0.00 3.01
1633 1729 8.849543 TGTGTAGGGGATAATAGAACTTTAGT 57.150 34.615 0.00 0.00 0.00 2.24
1634 1730 9.275572 TGTGTAGGGGATAATAGAACTTTAGTT 57.724 33.333 0.00 0.00 41.64 2.24
1683 1779 7.447374 AAGTATTGATTGATTTGTTGACCGA 57.553 32.000 0.00 0.00 0.00 4.69
1698 1794 4.481930 TGACCGAAACTAGCATTTGTTG 57.518 40.909 0.00 0.00 0.00 3.33
1699 1795 3.880490 TGACCGAAACTAGCATTTGTTGT 59.120 39.130 0.00 0.00 0.00 3.32
1705 1801 5.334802 CGAAACTAGCATTTGTTGTCATGGA 60.335 40.000 0.00 0.00 0.00 3.41
1736 1874 5.447279 GCATTAGCTTCGCTGCTTTACTTTA 60.447 40.000 7.25 0.00 43.74 1.85
1737 1875 6.542852 CATTAGCTTCGCTGCTTTACTTTAA 58.457 36.000 7.25 0.00 43.74 1.52
1740 1878 5.631992 AGCTTCGCTGCTTTACTTTAATTC 58.368 37.500 0.00 0.00 40.93 2.17
1742 1880 6.594159 AGCTTCGCTGCTTTACTTTAATTCTA 59.406 34.615 0.00 0.00 40.93 2.10
1743 1881 7.281100 AGCTTCGCTGCTTTACTTTAATTCTAT 59.719 33.333 0.00 0.00 40.93 1.98
1744 1882 7.910683 GCTTCGCTGCTTTACTTTAATTCTATT 59.089 33.333 0.00 0.00 0.00 1.73
1745 1883 9.774742 CTTCGCTGCTTTACTTTAATTCTATTT 57.225 29.630 0.00 0.00 0.00 1.40
1789 1927 0.736325 CAGCTACCGGTGAACTTCCG 60.736 60.000 19.93 0.00 46.49 4.30
1807 1951 6.289064 ACTTCCGAGAGTTGTTTATTTGAGT 58.711 36.000 0.00 0.00 0.00 3.41
1824 1968 7.665690 TATTTGAGTTAAAATTTGCTCAGGCA 58.334 30.769 15.31 8.40 38.89 4.75
1837 1981 2.002586 CTCAGGCACCGACTGTAAATG 58.997 52.381 0.00 0.00 40.10 2.32
1838 1982 1.086696 CAGGCACCGACTGTAAATGG 58.913 55.000 0.00 0.00 33.29 3.16
1878 2022 7.338703 GGTAACATCGTCATATATGGTAGGAGA 59.661 40.741 12.78 4.52 0.00 3.71
1919 2063 8.593945 AATAACAACATCATACCCAATTCTGT 57.406 30.769 0.00 0.00 0.00 3.41
1990 2157 2.430694 GTTTGGGACTGAAAGGCTTTGT 59.569 45.455 18.79 10.06 46.21 2.83
1996 2163 3.119137 GGACTGAAAGGCTTTGTTGTTGT 60.119 43.478 18.79 6.53 46.21 3.32
1997 2164 4.494484 GACTGAAAGGCTTTGTTGTTGTT 58.506 39.130 18.79 0.00 40.68 2.83
1998 2165 4.893608 ACTGAAAGGCTTTGTTGTTGTTT 58.106 34.783 18.79 0.00 39.30 2.83
1999 2166 6.031751 ACTGAAAGGCTTTGTTGTTGTTTA 57.968 33.333 18.79 0.00 39.30 2.01
2000 2167 5.867174 ACTGAAAGGCTTTGTTGTTGTTTAC 59.133 36.000 18.79 0.00 39.30 2.01
2003 2170 6.153000 TGAAAGGCTTTGTTGTTGTTTACCTA 59.847 34.615 18.79 0.00 0.00 3.08
2004 2171 6.532988 AAGGCTTTGTTGTTGTTTACCTAA 57.467 33.333 0.00 0.00 0.00 2.69
2006 2173 6.937392 AGGCTTTGTTGTTGTTTACCTAAAA 58.063 32.000 0.00 0.00 0.00 1.52
2007 2174 7.387643 AGGCTTTGTTGTTGTTTACCTAAAAA 58.612 30.769 0.00 0.00 0.00 1.94
2008 2175 7.547722 AGGCTTTGTTGTTGTTTACCTAAAAAG 59.452 33.333 0.00 0.00 0.00 2.27
2009 2176 7.332430 GGCTTTGTTGTTGTTTACCTAAAAAGT 59.668 33.333 0.00 0.00 0.00 2.66
2010 2177 8.377681 GCTTTGTTGTTGTTTACCTAAAAAGTC 58.622 33.333 0.00 0.00 0.00 3.01
2011 2178 9.634163 CTTTGTTGTTGTTTACCTAAAAAGTCT 57.366 29.630 0.00 0.00 0.00 3.24
2012 2179 9.984190 TTTGTTGTTGTTTACCTAAAAAGTCTT 57.016 25.926 0.00 0.00 0.00 3.01
2032 2199 9.892130 AAGTCTTATATTTGTTTACAGAGGGAG 57.108 33.333 0.00 0.00 0.00 4.30
2033 2200 9.047947 AGTCTTATATTTGTTTACAGAGGGAGT 57.952 33.333 0.00 0.00 0.00 3.85
2040 2207 7.979444 TTTGTTTACAGAGGGAGTATTTCTG 57.021 36.000 0.00 0.00 43.04 3.02
2041 2208 6.928348 TGTTTACAGAGGGAGTATTTCTGA 57.072 37.500 7.64 0.00 40.54 3.27
2042 2209 6.698380 TGTTTACAGAGGGAGTATTTCTGAC 58.302 40.000 7.64 0.00 40.54 3.51
2043 2210 6.269077 TGTTTACAGAGGGAGTATTTCTGACA 59.731 38.462 7.64 0.00 40.54 3.58
2044 2211 6.531503 TTACAGAGGGAGTATTTCTGACAG 57.468 41.667 7.64 0.00 40.54 3.51
2045 2212 4.678256 ACAGAGGGAGTATTTCTGACAGA 58.322 43.478 0.00 0.00 40.54 3.41
2046 2213 4.464597 ACAGAGGGAGTATTTCTGACAGAC 59.535 45.833 4.15 0.00 40.54 3.51
2047 2214 4.709397 CAGAGGGAGTATTTCTGACAGACT 59.291 45.833 4.15 0.00 40.54 3.24
2048 2215 4.953579 AGAGGGAGTATTTCTGACAGACTC 59.046 45.833 4.15 8.91 36.60 3.36
2049 2216 4.941713 AGGGAGTATTTCTGACAGACTCT 58.058 43.478 15.67 8.89 37.33 3.24
2056 2223 8.470657 AGTATTTCTGACAGACTCTATGCATA 57.529 34.615 4.15 6.20 0.00 3.14
2071 2246 4.579454 ATGCATATTGCCTGTGAACATC 57.421 40.909 0.00 0.00 44.23 3.06
2079 2254 4.019792 TGCCTGTGAACATCATTGTAGT 57.980 40.909 0.00 0.00 34.06 2.73
2128 2304 5.569355 TGCATTTGAAGAAGATGGTTCCTA 58.431 37.500 0.00 0.00 0.00 2.94
2236 2414 2.493278 ACTTGCTGATTGTGGTAATGCC 59.507 45.455 0.00 0.00 37.90 4.40
2237 2415 2.212812 TGCTGATTGTGGTAATGCCA 57.787 45.000 0.00 0.00 46.95 4.92
2268 2446 3.898123 TCCAGGAGGTGCTGAATAGTATC 59.102 47.826 0.00 0.00 35.89 2.24
2289 2467 7.859377 AGTATCGTATACCAACTTTCGTGTATG 59.141 37.037 0.00 0.00 0.00 2.39
2292 2470 6.527722 TCGTATACCAACTTTCGTGTATGAAC 59.472 38.462 0.00 0.00 0.00 3.18
2293 2471 6.237648 CGTATACCAACTTTCGTGTATGAACC 60.238 42.308 0.00 0.00 0.00 3.62
2299 2477 6.094881 CCAACTTTCGTGTATGAACCCAATAT 59.905 38.462 0.00 0.00 0.00 1.28
2334 2512 6.127196 ACCTTCCTGCAGTTGTAATTTTTGAA 60.127 34.615 13.81 3.39 0.00 2.69
2335 2513 6.421801 CCTTCCTGCAGTTGTAATTTTTGAAG 59.578 38.462 13.81 12.44 0.00 3.02
2342 2520 8.924691 TGCAGTTGTAATTTTTGAAGCATAATC 58.075 29.630 0.00 0.00 0.00 1.75
2355 2533 7.750229 TGAAGCATAATCTTTGAACTGACTT 57.250 32.000 0.00 0.00 0.00 3.01
2358 2536 7.934855 AGCATAATCTTTGAACTGACTTGAT 57.065 32.000 0.00 0.00 0.00 2.57
2359 2537 7.983307 AGCATAATCTTTGAACTGACTTGATC 58.017 34.615 0.00 0.00 0.00 2.92
2360 2538 7.828223 AGCATAATCTTTGAACTGACTTGATCT 59.172 33.333 0.00 0.00 0.00 2.75
2361 2539 7.909121 GCATAATCTTTGAACTGACTTGATCTG 59.091 37.037 0.00 0.00 0.00 2.90
2362 2540 5.876612 ATCTTTGAACTGACTTGATCTGC 57.123 39.130 0.00 0.00 0.00 4.26
2363 2541 4.707105 TCTTTGAACTGACTTGATCTGCA 58.293 39.130 0.00 0.00 0.00 4.41
2364 2542 4.512944 TCTTTGAACTGACTTGATCTGCAC 59.487 41.667 0.00 0.00 0.00 4.57
2365 2543 3.758755 TGAACTGACTTGATCTGCACT 57.241 42.857 0.00 0.00 0.00 4.40
2366 2544 3.396560 TGAACTGACTTGATCTGCACTG 58.603 45.455 0.00 0.00 0.00 3.66
2367 2545 2.469274 ACTGACTTGATCTGCACTGG 57.531 50.000 0.00 0.00 0.00 4.00
2368 2546 1.973515 ACTGACTTGATCTGCACTGGA 59.026 47.619 0.00 0.00 0.00 3.86
2374 2552 0.036671 TGATCTGCACTGGACAGCTG 60.037 55.000 13.48 13.48 35.04 4.24
2390 2568 5.414454 GGACAGCTGGTGATTGTAAACATTA 59.586 40.000 19.93 0.00 0.00 1.90
2391 2569 6.095440 GGACAGCTGGTGATTGTAAACATTAT 59.905 38.462 19.93 0.00 0.00 1.28
2415 2593 7.827819 TCTGTTTTTAATGGTCTGACTATCG 57.172 36.000 7.13 0.00 0.00 2.92
2429 2612 1.139058 ACTATCGGACATGGGTTCTGC 59.861 52.381 0.00 0.00 0.00 4.26
2448 2631 7.363431 GTTCTGCCTTTAACAATAGCATATCC 58.637 38.462 0.00 0.00 32.11 2.59
2463 2646 5.788450 AGCATATCCTGTTATGTAGACTGC 58.212 41.667 0.00 0.00 33.07 4.40
2593 2776 0.107752 GGGAGGAAGAAGCAGAGCTG 60.108 60.000 0.00 0.00 39.62 4.24
2603 2786 3.453717 AGAAGCAGAGCTGGAATATGTGA 59.546 43.478 0.00 0.00 39.62 3.58
2616 2799 7.766278 GCTGGAATATGTGAGTTCTCTTTCTAA 59.234 37.037 1.53 0.00 0.00 2.10
2657 2840 9.889128 AATTCAGTACCCCATGAAATTAATTTG 57.111 29.630 17.98 4.88 38.80 2.32
2730 2913 3.066621 GTGTGTCTGTTTTTCTCATGCCA 59.933 43.478 0.00 0.00 0.00 4.92
2869 3052 3.277142 AGAAACGTTCTCAACCTTGGT 57.723 42.857 0.00 0.00 34.07 3.67
3018 3201 4.781071 CTGTGTGCTTGAAAGATGAGAAC 58.219 43.478 0.00 0.00 0.00 3.01
3025 3208 4.436584 GCTTGAAAGATGAGAACGGTGATG 60.437 45.833 0.00 0.00 0.00 3.07
3027 3210 4.641396 TGAAAGATGAGAACGGTGATGTT 58.359 39.130 0.00 0.00 34.02 2.71
3051 3234 2.094854 GGTTGCAGAATCAGGCTTTGAG 60.095 50.000 0.00 0.00 39.68 3.02
3206 3390 9.601810 ACCCTTATCATGTCTAGTATCAACATA 57.398 33.333 0.00 0.00 32.54 2.29
3235 3419 5.941948 ACTGCTTGGTTACACTTGATAAC 57.058 39.130 0.00 0.00 32.70 1.89
3259 3443 2.843701 CTGACCCTAATCATGTCCAGC 58.156 52.381 0.00 0.00 0.00 4.85
3316 3502 9.035890 TCTCACCTTCTGAATATACTCAAAAGA 57.964 33.333 0.00 0.00 26.56 2.52
3352 3538 7.292713 TGTAGGTGATGTACTTCTTGTGTTA 57.707 36.000 9.87 0.00 0.00 2.41
3368 3554 6.708949 TCTTGTGTTATTCTCACCAGTAAACC 59.291 38.462 0.00 0.00 35.25 3.27
3405 3591 4.789012 AAAATACATGCTGGACCAACTG 57.211 40.909 0.00 0.00 0.00 3.16
3494 3707 5.993748 TTTATGTCCTTTTGGGCTTTAGG 57.006 39.130 0.00 0.00 46.45 2.69
3520 3733 5.592054 CCTGATCGTCTTAGTATCTGCAAA 58.408 41.667 0.00 0.00 0.00 3.68
3525 3738 7.915923 TGATCGTCTTAGTATCTGCAAAACTAG 59.084 37.037 0.00 0.00 0.00 2.57
3543 3757 2.622064 AGACCAGCAGAACTTTTCGT 57.378 45.000 0.00 0.00 34.02 3.85
3547 3761 1.388888 CAGCAGAACTTTTCGTTGCG 58.611 50.000 0.00 0.00 36.36 4.85
3559 3773 0.248296 TCGTTGCGAAAAACTGGCAC 60.248 50.000 0.00 0.00 36.23 5.01
3575 3803 3.485394 TGGCACACAGTGTTTCATGTAT 58.515 40.909 2.45 0.00 35.75 2.29
3576 3804 3.252944 TGGCACACAGTGTTTCATGTATG 59.747 43.478 2.45 0.00 35.75 2.39
3882 4110 5.211973 TGCTAATCTGGTAATCTCTCTGGT 58.788 41.667 0.00 0.00 0.00 4.00
3886 4114 6.478512 AATCTGGTAATCTCTCTGGTCTTC 57.521 41.667 0.00 0.00 0.00 2.87
3887 4115 4.282496 TCTGGTAATCTCTCTGGTCTTCC 58.718 47.826 0.00 0.00 0.00 3.46
3893 4121 1.625818 TCTCTCTGGTCTTCCCAAAGC 59.374 52.381 0.00 0.00 44.65 3.51
3896 4124 2.039084 TCTCTGGTCTTCCCAAAGCTTC 59.961 50.000 0.00 0.00 44.65 3.86
3954 4182 4.503741 TTAGTTTTGGCATTCTCAGTGC 57.496 40.909 0.00 0.00 41.78 4.40
3961 4189 1.863454 GGCATTCTCAGTGCTCATACG 59.137 52.381 0.00 0.00 42.16 3.06
4010 4238 8.405531 GCCTATGTAAGTTTATTTTGCAGATCA 58.594 33.333 0.00 0.00 0.00 2.92
4083 4312 5.726793 AGTCATCCCATGAACTTACCTACTT 59.273 40.000 0.00 0.00 41.69 2.24
4096 4325 7.357429 ACTTACCTACTTCATACACCCATAC 57.643 40.000 0.00 0.00 0.00 2.39
4097 4326 4.931661 ACCTACTTCATACACCCATACG 57.068 45.455 0.00 0.00 0.00 3.06
4098 4327 3.640029 ACCTACTTCATACACCCATACGG 59.360 47.826 0.00 0.00 37.81 4.02
4099 4328 2.614829 ACTTCATACACCCATACGGC 57.385 50.000 0.00 0.00 33.26 5.68
4100 4329 1.140252 ACTTCATACACCCATACGGCC 59.860 52.381 0.00 0.00 33.26 6.13
4101 4330 1.140052 CTTCATACACCCATACGGCCA 59.860 52.381 2.24 0.00 33.26 5.36
4102 4331 1.429930 TCATACACCCATACGGCCAT 58.570 50.000 2.24 0.00 33.26 4.40
4103 4332 2.610873 TCATACACCCATACGGCCATA 58.389 47.619 2.24 0.00 33.26 2.74
4130 4359 9.837525 CCACTCTTTCTTGAAATCTTGATAAAG 57.162 33.333 0.00 0.00 0.00 1.85
4144 4373 5.935206 TCTTGATAAAGCACGTGGTTTCATA 59.065 36.000 39.70 27.11 43.68 2.15
4155 4384 6.705782 CACGTGGTTTCATATAGTGAATGTC 58.294 40.000 7.95 0.00 45.77 3.06
4156 4385 6.535150 CACGTGGTTTCATATAGTGAATGTCT 59.465 38.462 7.95 0.00 45.77 3.41
4160 4389 8.730680 GTGGTTTCATATAGTGAATGTCTGTTT 58.269 33.333 0.00 0.00 45.77 2.83
4320 4549 6.150976 TGAATTGGTAATGTTGATGTCCTGAC 59.849 38.462 0.00 0.00 0.00 3.51
4329 4558 5.237815 TGTTGATGTCCTGACACTATTGAC 58.762 41.667 1.39 0.00 45.05 3.18
4339 4568 5.122396 CCTGACACTATTGACCACTTTTAGC 59.878 44.000 0.00 0.00 0.00 3.09
4361 4590 4.630069 GCCTTTCAAACTCAAGATACGCTA 59.370 41.667 0.00 0.00 0.00 4.26
4494 4723 7.466455 GCTGTTATGTCAATGTGGACTAGATTG 60.466 40.741 0.00 2.62 40.43 2.67
4540 4769 4.651503 TGTGGAATGAAGCCCTTAACAAAA 59.348 37.500 0.00 0.00 0.00 2.44
4566 4795 4.513406 TGGGACTGAGGTTTGTAAACTT 57.487 40.909 7.36 0.00 38.89 2.66
4569 4798 4.643334 GGGACTGAGGTTTGTAAACTTGTT 59.357 41.667 7.36 0.00 38.89 2.83
4631 4860 8.115384 TGTGTAGGGTCCTATAAGTTTGTAGTA 58.885 37.037 0.00 0.00 0.00 1.82
4632 4861 8.628280 GTGTAGGGTCCTATAAGTTTGTAGTAG 58.372 40.741 0.00 0.00 0.00 2.57
4657 4886 2.225019 CAGCTGACACAAGGTTAAGCAG 59.775 50.000 8.42 1.56 40.23 4.24
4673 4902 0.381801 GCAGTGTGGTGGTTTCTGTG 59.618 55.000 0.00 0.00 0.00 3.66
4699 4928 3.040147 TCATTTCTGACACCCGAGTTC 57.960 47.619 0.00 0.00 0.00 3.01
4758 4989 5.975410 CAGCTAACCTTTAGATGCACTAC 57.025 43.478 0.00 0.00 0.00 2.73
4759 4990 5.665459 CAGCTAACCTTTAGATGCACTACT 58.335 41.667 0.00 0.00 0.00 2.57
4760 4991 6.806751 CAGCTAACCTTTAGATGCACTACTA 58.193 40.000 0.00 0.00 0.00 1.82
4761 4992 6.697892 CAGCTAACCTTTAGATGCACTACTAC 59.302 42.308 0.00 0.00 0.00 2.73
4771 5002 1.265454 GCACTACTACTGTGGGGCCT 61.265 60.000 0.84 0.00 46.53 5.19
4826 5057 6.901081 GGCTTAGTTGGCCTTGAAATATAT 57.099 37.500 3.32 0.00 45.57 0.86
4891 5122 7.439108 AAAGATAGGTAAATAGTGCTCCTGT 57.561 36.000 0.00 0.00 0.00 4.00
4908 5139 5.665459 CTCCTGTGTCTATCTACCCAAAAG 58.335 45.833 0.00 0.00 0.00 2.27
5075 5504 7.266922 TGGTAAATCAACTACTTGTGTTTCC 57.733 36.000 0.00 0.00 0.00 3.13
5105 5534 1.405526 GCGATGTACAAGGAAGCTGGA 60.406 52.381 0.00 0.00 0.00 3.86
5108 5537 3.130516 CGATGTACAAGGAAGCTGGAGTA 59.869 47.826 0.00 0.00 0.00 2.59
5135 5564 5.535783 TGCTCCTTTCACAGAATCAATTCAA 59.464 36.000 5.59 0.00 39.23 2.69
5168 5597 0.673644 CTGTAAGTGCCCAAGTCCCG 60.674 60.000 0.00 0.00 0.00 5.14
5169 5598 1.373812 GTAAGTGCCCAAGTCCCGT 59.626 57.895 0.00 0.00 0.00 5.28
5170 5599 0.609662 GTAAGTGCCCAAGTCCCGTA 59.390 55.000 0.00 0.00 0.00 4.02
5171 5600 0.609662 TAAGTGCCCAAGTCCCGTAC 59.390 55.000 0.00 0.00 0.00 3.67
5172 5601 2.046604 GTGCCCAAGTCCCGTACC 60.047 66.667 0.00 0.00 0.00 3.34
5191 5620 4.844349 ACCTACCTGTCATAGTTGCAAT 57.156 40.909 0.59 0.00 0.00 3.56
5197 5628 6.403866 ACCTGTCATAGTTGCAATTGAAAA 57.596 33.333 10.34 0.00 0.00 2.29
5198 5629 6.815089 ACCTGTCATAGTTGCAATTGAAAAA 58.185 32.000 10.34 0.00 0.00 1.94
5201 5632 7.095940 CCTGTCATAGTTGCAATTGAAAAAGTG 60.096 37.037 10.34 4.75 0.00 3.16
5202 5633 7.264221 TGTCATAGTTGCAATTGAAAAAGTGT 58.736 30.769 10.34 0.00 0.00 3.55
5203 5634 7.763528 TGTCATAGTTGCAATTGAAAAAGTGTT 59.236 29.630 10.34 0.00 0.00 3.32
5204 5635 9.243637 GTCATAGTTGCAATTGAAAAAGTGTTA 57.756 29.630 10.34 0.00 0.00 2.41
5252 5683 5.230942 ACATCTGAGACGATTTCGAACTTT 58.769 37.500 7.01 0.00 43.02 2.66
5255 5686 4.917998 TCTGAGACGATTTCGAACTTTCAG 59.082 41.667 7.01 6.20 43.02 3.02
5265 5696 5.657470 TTCGAACTTTCAGACTGAACATG 57.343 39.130 17.52 12.61 35.89 3.21
5299 5730 5.684704 TGTGAAAGGATAATAGGGCTTGAG 58.315 41.667 0.00 0.00 0.00 3.02
5353 5784 7.523709 GCTTTCTTTTGGTTGATTGATCCTGTA 60.524 37.037 0.00 0.00 0.00 2.74
5356 5787 7.405292 TCTTTTGGTTGATTGATCCTGTATCT 58.595 34.615 0.00 0.00 35.45 1.98
5442 5874 4.101448 CCGGACCAGGCTCCCAAG 62.101 72.222 0.00 0.00 0.00 3.61
5451 5883 2.743928 GCTCCCAAGCTGGTGTCG 60.744 66.667 0.00 0.00 45.55 4.35
5455 5887 0.830444 TCCCAAGCTGGTGTCGTACT 60.830 55.000 0.00 0.00 35.17 2.73
5500 5932 2.700897 CCAGATACTTGGGGAGTACAGG 59.299 54.545 0.00 0.00 43.38 4.00
5548 5980 2.095919 AGAGCCGTACGCAAAAATGAAC 60.096 45.455 10.49 0.00 41.38 3.18
5688 6128 7.225931 ACGCTGTATATAAATGTTTGGTACAGG 59.774 37.037 17.95 13.69 42.39 4.00
5690 6130 8.342634 GCTGTATATAAATGTTTGGTACAGGTG 58.657 37.037 17.95 0.00 42.39 4.00
5693 6133 2.675658 AATGTTTGGTACAGGTGGCT 57.324 45.000 0.00 0.00 42.39 4.75
5734 6175 1.815003 GGCAGTGCATAGTTTTCTGCT 59.185 47.619 18.61 0.00 46.92 4.24
5764 6205 1.527433 GCAGTTTCTGAACCCAGGCC 61.527 60.000 0.00 0.00 40.76 5.19
5786 6227 4.080356 CCTCCAATGTGAACCTGGATAGAA 60.080 45.833 0.00 0.00 38.55 2.10
5791 6232 6.261826 CCAATGTGAACCTGGATAGAAGATTC 59.738 42.308 0.00 0.00 31.38 2.52
5815 6256 5.108065 CGCTCGCATAGATAGAACTTTCAAG 60.108 44.000 0.00 0.00 0.00 3.02
5817 6258 5.660460 TCGCATAGATAGAACTTTCAAGCA 58.340 37.500 0.00 0.00 0.00 3.91
5818 6259 6.283694 TCGCATAGATAGAACTTTCAAGCAT 58.716 36.000 0.00 0.00 0.00 3.79
5819 6260 7.433680 TCGCATAGATAGAACTTTCAAGCATA 58.566 34.615 0.00 0.00 0.00 3.14
5820 6261 7.596621 TCGCATAGATAGAACTTTCAAGCATAG 59.403 37.037 0.00 0.00 0.00 2.23
5821 6262 7.517321 GCATAGATAGAACTTTCAAGCATAGC 58.483 38.462 0.00 0.00 0.00 2.97
5822 6263 7.387397 GCATAGATAGAACTTTCAAGCATAGCT 59.613 37.037 0.00 0.00 42.56 3.32
5946 6387 5.772825 TCCATTTGTTCTCTGACCAAAAG 57.227 39.130 0.00 0.00 32.39 2.27
5967 6408 3.323403 AGACATACATTCAGAGGCTAGGC 59.677 47.826 8.55 8.55 0.00 3.93
6151 6595 5.212934 GTTTAAGTTGCAGCAGGTTCTAAC 58.787 41.667 2.55 0.00 0.00 2.34
6160 6604 4.217550 GCAGCAGGTTCTAACAAATAACCA 59.782 41.667 6.27 0.00 44.21 3.67
6184 6628 1.363744 GTCCATTCTCAGAGGTTGCG 58.636 55.000 0.00 0.00 0.00 4.85
6245 6694 2.351726 CGAGCTTAAATGCACCCTGTAC 59.648 50.000 0.00 0.00 34.99 2.90
6338 6921 6.040209 ACCAAAATGCTTCATGCTGAAATA 57.960 33.333 0.00 0.00 43.37 1.40
6345 6928 8.867112 AATGCTTCATGCTGAAATATTACAAG 57.133 30.769 0.00 0.00 43.37 3.16
6350 6933 9.955208 CTTCATGCTGAAATATTACAAGCATAA 57.045 29.630 22.23 12.50 39.16 1.90
6448 7033 0.405198 TCAGGAAGCATTTGAGCCCA 59.595 50.000 0.00 0.00 34.23 5.36
6466 7052 2.437281 CCCAGAGCAGATACTCCACATT 59.563 50.000 0.00 0.00 37.39 2.71
6477 7063 0.251916 CTCCACATTCCGGCCAACTA 59.748 55.000 2.24 0.00 0.00 2.24
6502 7088 4.900684 TCAACCGTATGGATGAAGTGAAA 58.099 39.130 11.30 0.00 43.37 2.69
6577 7163 7.768582 TCTTCAAGGCGAAACTATGATCATTAA 59.231 33.333 14.65 0.00 31.71 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 3.192844 TCACTAGCCACTAGGACGAAAAG 59.807 47.826 6.58 0.00 38.30 2.27
21 22 2.550606 GAGATCACTAGCCACTAGGACG 59.449 54.545 6.58 0.00 38.30 4.79
53 54 7.642586 CCTACTTTTCCTTTTAACTGAAACACG 59.357 37.037 0.00 0.00 0.00 4.49
59 60 6.102174 AGGGTCCTACTTTTCCTTTTAACTGA 59.898 38.462 0.00 0.00 0.00 3.41
92 94 9.605275 GCCATGTATTCATATCACATATGTAGT 57.395 33.333 8.32 2.76 42.49 2.73
98 100 8.377799 AGAGTTGCCATGTATTCATATCACATA 58.622 33.333 0.00 0.00 31.81 2.29
105 107 7.360113 TGTCTAGAGTTGCCATGTATTCATA 57.640 36.000 0.00 0.00 32.47 2.15
141 143 6.899089 TCTCATCCTCATGCCACTAAATTTA 58.101 36.000 0.00 0.00 0.00 1.40
152 154 7.095857 CGATAACTAAAGTTCTCATCCTCATGC 60.096 40.741 0.00 0.00 39.31 4.06
154 156 8.239038 TCGATAACTAAAGTTCTCATCCTCAT 57.761 34.615 0.00 0.00 39.31 2.90
283 288 0.315886 ATAAGCGTCACACGTGTGGA 59.684 50.000 39.88 26.78 44.73 4.02
297 302 9.830975 AACCATATTTTTACCCAAATGATAAGC 57.169 29.630 0.00 0.00 0.00 3.09
355 360 9.996554 TTCTGTTTGATTCAGTCAGTTAGATAA 57.003 29.630 14.99 4.25 38.29 1.75
458 465 7.591165 AGATATTTTCGAATGAAGATGGCATG 58.409 34.615 3.81 0.00 35.06 4.06
459 466 7.756395 AGATATTTTCGAATGAAGATGGCAT 57.244 32.000 0.00 0.00 35.06 4.40
552 560 9.710818 TCCCTCTGTAAACAACTATAAGAGTAT 57.289 33.333 0.00 0.00 37.44 2.12
553 561 9.186837 CTCCCTCTGTAAACAACTATAAGAGTA 57.813 37.037 0.00 0.00 37.44 2.59
554 562 7.674772 ACTCCCTCTGTAAACAACTATAAGAGT 59.325 37.037 0.00 0.00 41.56 3.24
555 563 8.068892 ACTCCCTCTGTAAACAACTATAAGAG 57.931 38.462 0.00 0.00 0.00 2.85
563 571 8.098912 TCCTAAAATACTCCCTCTGTAAACAAC 58.901 37.037 0.00 0.00 0.00 3.32
566 574 7.125356 TCCTCCTAAAATACTCCCTCTGTAAAC 59.875 40.741 0.00 0.00 0.00 2.01
620 628 4.620982 CCCAGATCAGGTGTTTGTTTTTC 58.379 43.478 3.16 0.00 0.00 2.29
657 693 2.476241 CGTTGGATTGCTTTTTCTTGGC 59.524 45.455 0.00 0.00 0.00 4.52
698 745 4.296729 ACGAGTCCGGGTCCCACT 62.297 66.667 9.12 4.45 40.78 4.00
699 746 4.065281 CACGAGTCCGGGTCCCAC 62.065 72.222 9.12 0.00 40.78 4.61
706 753 2.558554 CTAGTTGGGCACGAGTCCGG 62.559 65.000 0.00 0.00 44.71 5.14
707 754 1.153823 CTAGTTGGGCACGAGTCCG 60.154 63.158 0.00 0.00 44.71 4.79
708 755 0.824759 ATCTAGTTGGGCACGAGTCC 59.175 55.000 0.00 0.00 41.04 3.85
748 795 9.477484 GGGGATCTAGTTTTTCTTTTTCTTTTC 57.523 33.333 0.00 0.00 0.00 2.29
770 817 2.256306 GCTTTTGGATTTTGAGGGGGA 58.744 47.619 0.00 0.00 0.00 4.81
846 930 1.822371 GAGTGGAGGAGGAGTCTGTTC 59.178 57.143 0.00 0.00 0.00 3.18
851 935 1.316706 CGTGGAGTGGAGGAGGAGTC 61.317 65.000 0.00 0.00 0.00 3.36
852 936 1.304547 CGTGGAGTGGAGGAGGAGT 60.305 63.158 0.00 0.00 0.00 3.85
953 1037 4.324991 GCCGTCGGTTGGTTCCCT 62.325 66.667 13.94 0.00 0.00 4.20
966 1055 4.760047 GGGAGATGTGTGCGCCGT 62.760 66.667 4.18 0.00 0.00 5.68
1047 1136 1.379176 CACGAGCAGGAGGAGGAGA 60.379 63.158 0.00 0.00 0.00 3.71
1431 1520 2.241685 TCCCAGAGGTGACTACTCCTAC 59.758 54.545 0.00 0.00 44.43 3.18
1442 1531 1.546961 ACGAGTAGTTCCCAGAGGTG 58.453 55.000 0.00 0.00 0.00 4.00
1482 1571 5.569630 GCTTCAGTGACCACCTATATATGGG 60.570 48.000 13.32 13.32 40.59 4.00
1496 1585 0.880278 TGCACCGAAGCTTCAGTGAC 60.880 55.000 35.90 27.65 37.71 3.67
1542 1631 9.439537 GTTCTTAATTATAACTAAGCAGCAAGC 57.560 33.333 8.50 0.00 46.19 4.01
1625 1721 3.655777 TCACCATGGGGAGAACTAAAGTT 59.344 43.478 14.36 0.00 38.32 2.66
1626 1722 3.256704 TCACCATGGGGAGAACTAAAGT 58.743 45.455 14.36 0.00 38.05 2.66
1627 1723 4.301072 TTCACCATGGGGAGAACTAAAG 57.699 45.455 18.08 0.00 38.62 1.85
1633 1729 1.455822 AAGGTTCACCATGGGGAGAA 58.544 50.000 18.08 14.02 40.82 2.87
1634 1730 1.354368 GAAAGGTTCACCATGGGGAGA 59.646 52.381 18.08 8.28 38.89 3.71
1635 1731 1.355720 AGAAAGGTTCACCATGGGGAG 59.644 52.381 18.08 5.75 38.89 4.30
1636 1732 1.075374 CAGAAAGGTTCACCATGGGGA 59.925 52.381 14.36 14.36 38.89 4.81
1637 1733 1.075374 TCAGAAAGGTTCACCATGGGG 59.925 52.381 18.09 13.53 38.89 4.96
1638 1734 2.584835 TCAGAAAGGTTCACCATGGG 57.415 50.000 18.09 5.22 38.89 4.00
1639 1735 4.342092 ACTTTTCAGAAAGGTTCACCATGG 59.658 41.667 11.19 11.19 45.24 3.66
1640 1736 5.520376 ACTTTTCAGAAAGGTTCACCATG 57.480 39.130 4.83 0.00 45.24 3.66
1641 1737 7.505585 TCAATACTTTTCAGAAAGGTTCACCAT 59.494 33.333 15.27 0.93 45.24 3.55
1683 1779 6.403866 TTCCATGACAACAAATGCTAGTTT 57.596 33.333 0.00 0.00 0.00 2.66
1698 1794 1.064621 AATGCGCGCATTCCATGAC 59.935 52.632 44.31 9.79 42.32 3.06
1699 1795 3.512035 AATGCGCGCATTCCATGA 58.488 50.000 44.31 19.49 42.32 3.07
1745 1883 6.727824 GAGATCTTGATCTCAACGGAAAAA 57.272 37.500 26.63 0.00 44.82 1.94
1746 1884 6.295292 TGAGAGATCTTGATCTCAACGGAAAA 60.295 38.462 30.49 13.10 46.74 2.29
1747 1885 5.185828 TGAGAGATCTTGATCTCAACGGAAA 59.814 40.000 30.49 13.35 46.74 3.13
1748 1886 4.706962 TGAGAGATCTTGATCTCAACGGAA 59.293 41.667 30.49 14.01 46.74 4.30
1749 1887 4.273318 TGAGAGATCTTGATCTCAACGGA 58.727 43.478 30.49 14.16 46.74 4.69
1750 1888 4.645762 TGAGAGATCTTGATCTCAACGG 57.354 45.455 30.49 0.00 46.74 4.44
1824 1968 1.067354 GTCGGTCCATTTACAGTCGGT 60.067 52.381 0.00 0.00 0.00 4.69
1837 1981 3.404899 TGTTACCATTTCAAGTCGGTCC 58.595 45.455 0.00 0.00 32.81 4.46
1838 1982 4.201685 CGATGTTACCATTTCAAGTCGGTC 60.202 45.833 0.00 0.00 32.81 4.79
1897 2041 6.916360 AACAGAATTGGGTATGATGTTGTT 57.084 33.333 0.00 0.00 29.37 2.83
1926 2070 9.178758 GAGTTGTAACCCATAAGATCTCAAAAT 57.821 33.333 0.00 0.00 0.00 1.82
1942 2109 2.433604 GGGGTAGGCTAGAGTTGTAACC 59.566 54.545 0.00 0.00 0.00 2.85
1946 2113 1.907255 GTTGGGGTAGGCTAGAGTTGT 59.093 52.381 0.00 0.00 0.00 3.32
2006 2173 9.892130 CTCCCTCTGTAAACAAATATAAGACTT 57.108 33.333 0.00 0.00 0.00 3.01
2007 2174 9.047947 ACTCCCTCTGTAAACAAATATAAGACT 57.952 33.333 0.00 0.00 0.00 3.24
2014 2181 9.667107 CAGAAATACTCCCTCTGTAAACAAATA 57.333 33.333 0.00 0.00 33.39 1.40
2015 2182 8.383175 TCAGAAATACTCCCTCTGTAAACAAAT 58.617 33.333 0.00 0.00 38.20 2.32
2016 2183 7.660208 GTCAGAAATACTCCCTCTGTAAACAAA 59.340 37.037 0.00 0.00 38.20 2.83
2017 2184 7.159372 GTCAGAAATACTCCCTCTGTAAACAA 58.841 38.462 0.00 0.00 38.20 2.83
2018 2185 6.269077 TGTCAGAAATACTCCCTCTGTAAACA 59.731 38.462 0.00 0.00 38.20 2.83
2019 2186 6.698380 TGTCAGAAATACTCCCTCTGTAAAC 58.302 40.000 0.00 0.00 38.20 2.01
2020 2187 6.724441 TCTGTCAGAAATACTCCCTCTGTAAA 59.276 38.462 0.00 0.00 38.20 2.01
2021 2188 6.153000 GTCTGTCAGAAATACTCCCTCTGTAA 59.847 42.308 3.51 0.00 38.20 2.41
2022 2189 5.652891 GTCTGTCAGAAATACTCCCTCTGTA 59.347 44.000 3.51 0.00 38.20 2.74
2023 2190 4.464597 GTCTGTCAGAAATACTCCCTCTGT 59.535 45.833 3.51 0.00 38.20 3.41
2024 2191 4.709397 AGTCTGTCAGAAATACTCCCTCTG 59.291 45.833 3.51 0.00 38.34 3.35
2025 2192 4.941713 AGTCTGTCAGAAATACTCCCTCT 58.058 43.478 3.51 0.00 0.00 3.69
2026 2193 4.953579 AGAGTCTGTCAGAAATACTCCCTC 59.046 45.833 3.51 4.57 37.82 4.30
2027 2194 4.941713 AGAGTCTGTCAGAAATACTCCCT 58.058 43.478 3.51 0.00 37.82 4.20
2028 2195 6.737346 GCATAGAGTCTGTCAGAAATACTCCC 60.737 46.154 3.51 0.00 37.82 4.30
2029 2196 6.183360 TGCATAGAGTCTGTCAGAAATACTCC 60.183 42.308 3.51 0.00 37.82 3.85
2030 2197 6.800543 TGCATAGAGTCTGTCAGAAATACTC 58.199 40.000 3.51 7.65 37.44 2.59
2031 2198 6.782082 TGCATAGAGTCTGTCAGAAATACT 57.218 37.500 3.51 0.00 0.00 2.12
2032 2199 9.703892 AATATGCATAGAGTCTGTCAGAAATAC 57.296 33.333 12.79 0.00 0.00 1.89
2033 2200 9.702494 CAATATGCATAGAGTCTGTCAGAAATA 57.298 33.333 12.79 0.00 0.00 1.40
2034 2201 7.172875 GCAATATGCATAGAGTCTGTCAGAAAT 59.827 37.037 12.79 0.00 44.26 2.17
2035 2202 6.481313 GCAATATGCATAGAGTCTGTCAGAAA 59.519 38.462 12.79 0.00 44.26 2.52
2036 2203 5.987953 GCAATATGCATAGAGTCTGTCAGAA 59.012 40.000 12.79 0.00 44.26 3.02
2037 2204 5.536260 GCAATATGCATAGAGTCTGTCAGA 58.464 41.667 12.79 0.00 44.26 3.27
2038 2205 5.842619 GCAATATGCATAGAGTCTGTCAG 57.157 43.478 12.79 0.00 44.26 3.51
2056 2223 5.012239 ACTACAATGATGTTCACAGGCAAT 58.988 37.500 0.00 0.00 41.05 3.56
2187 2365 6.183360 GGGTGAGACAATGGAGTAAAACAAAA 60.183 38.462 0.00 0.00 0.00 2.44
2236 2414 3.389329 AGCACCTCCTGGATATAGTTGTG 59.611 47.826 0.00 0.00 37.04 3.33
2237 2415 3.389329 CAGCACCTCCTGGATATAGTTGT 59.611 47.826 0.00 0.00 37.04 3.32
2238 2416 3.643320 TCAGCACCTCCTGGATATAGTTG 59.357 47.826 0.00 0.00 37.04 3.16
2240 2418 3.619900 TCAGCACCTCCTGGATATAGT 57.380 47.619 0.00 0.00 37.04 2.12
2241 2419 5.719085 ACTATTCAGCACCTCCTGGATATAG 59.281 44.000 0.00 0.00 33.84 1.31
2242 2420 5.655394 ACTATTCAGCACCTCCTGGATATA 58.345 41.667 0.00 0.00 33.84 0.86
2243 2421 4.497516 ACTATTCAGCACCTCCTGGATAT 58.502 43.478 0.00 0.00 33.84 1.63
2244 2422 3.928754 ACTATTCAGCACCTCCTGGATA 58.071 45.455 0.00 0.00 33.20 2.59
2247 2425 3.305676 CGATACTATTCAGCACCTCCTGG 60.306 52.174 0.00 0.00 39.83 4.45
2268 2446 6.237648 GGTTCATACACGAAAGTTGGTATACG 60.238 42.308 0.00 0.00 46.40 3.06
2289 2467 7.333423 GGAAGGTTAAAGCAAAATATTGGGTTC 59.667 37.037 5.58 0.00 37.02 3.62
2292 2470 6.818142 CAGGAAGGTTAAAGCAAAATATTGGG 59.182 38.462 0.00 0.00 37.02 4.12
2293 2471 6.313658 GCAGGAAGGTTAAAGCAAAATATTGG 59.686 38.462 0.00 0.00 37.02 3.16
2299 2477 3.704061 ACTGCAGGAAGGTTAAAGCAAAA 59.296 39.130 19.93 0.00 0.00 2.44
2334 2512 7.828223 AGATCAAGTCAGTTCAAAGATTATGCT 59.172 33.333 0.00 0.00 0.00 3.79
2335 2513 7.909121 CAGATCAAGTCAGTTCAAAGATTATGC 59.091 37.037 0.00 0.00 0.00 3.14
2342 2520 4.514441 AGTGCAGATCAAGTCAGTTCAAAG 59.486 41.667 0.00 0.00 0.00 2.77
2347 2525 2.369860 TCCAGTGCAGATCAAGTCAGTT 59.630 45.455 0.00 0.00 0.00 3.16
2355 2533 0.036671 CAGCTGTCCAGTGCAGATCA 60.037 55.000 5.25 0.00 36.12 2.92
2358 2536 2.142761 ACCAGCTGTCCAGTGCAGA 61.143 57.895 13.81 0.00 36.12 4.26
2359 2537 1.964891 CACCAGCTGTCCAGTGCAG 60.965 63.158 13.81 0.00 37.06 4.41
2360 2538 1.771783 ATCACCAGCTGTCCAGTGCA 61.772 55.000 13.81 4.55 0.00 4.57
2361 2539 0.607489 AATCACCAGCTGTCCAGTGC 60.607 55.000 13.81 0.00 0.00 4.40
2362 2540 1.162698 CAATCACCAGCTGTCCAGTG 58.837 55.000 13.81 13.31 0.00 3.66
2363 2541 0.767375 ACAATCACCAGCTGTCCAGT 59.233 50.000 13.81 0.00 0.00 4.00
2364 2542 2.768253 TACAATCACCAGCTGTCCAG 57.232 50.000 13.81 0.00 0.00 3.86
2365 2543 3.146066 GTTTACAATCACCAGCTGTCCA 58.854 45.455 13.81 0.00 0.00 4.02
2366 2544 3.146066 TGTTTACAATCACCAGCTGTCC 58.854 45.455 13.81 0.00 0.00 4.02
2367 2545 5.376854 AATGTTTACAATCACCAGCTGTC 57.623 39.130 13.81 0.00 0.00 3.51
2368 2546 6.886459 AGATAATGTTTACAATCACCAGCTGT 59.114 34.615 13.81 0.00 0.00 4.40
2390 2568 7.495934 CCGATAGTCAGACCATTAAAAACAGAT 59.504 37.037 0.00 0.00 0.00 2.90
2391 2569 6.816640 CCGATAGTCAGACCATTAAAAACAGA 59.183 38.462 0.00 0.00 0.00 3.41
2412 2590 1.224592 GGCAGAACCCATGTCCGAT 59.775 57.895 0.00 0.00 0.00 4.18
2415 2593 2.492088 GTTAAAGGCAGAACCCATGTCC 59.508 50.000 0.00 0.00 40.58 4.02
2448 2631 4.753233 AGCAGAAGCAGTCTACATAACAG 58.247 43.478 0.00 0.00 45.49 3.16
2456 2639 2.693069 GCTTTGAGCAGAAGCAGTCTA 58.307 47.619 12.13 0.00 46.67 2.59
2463 2646 0.795085 CGTCCAGCTTTGAGCAGAAG 59.205 55.000 2.47 0.00 45.56 2.85
2657 2840 9.612620 CATGGTAATTGAACAGTTTAGAACTTC 57.387 33.333 0.00 0.00 40.46 3.01
2691 2874 0.813184 CACCATGCTGCTTAACCTGG 59.187 55.000 0.00 0.00 0.00 4.45
2730 2913 3.094572 CAAAGTTCCAAGCATCCCAGAT 58.905 45.455 0.00 0.00 0.00 2.90
3018 3201 0.039256 CTGCAACCCAAACATCACCG 60.039 55.000 0.00 0.00 0.00 4.94
3025 3208 1.337167 GCCTGATTCTGCAACCCAAAC 60.337 52.381 0.00 0.00 0.00 2.93
3027 3210 0.112995 AGCCTGATTCTGCAACCCAA 59.887 50.000 0.00 0.00 0.00 4.12
3080 3263 7.304735 TGAACAACAAAGATTCCATTCATACG 58.695 34.615 0.00 0.00 0.00 3.06
3206 3390 8.630054 TCAAGTGTAACCAAGCAGTATAAATT 57.370 30.769 0.00 0.00 37.80 1.82
3225 3409 3.614092 AGGGTCAGCATGTTATCAAGTG 58.386 45.455 0.00 0.00 37.40 3.16
3235 3419 3.144506 GGACATGATTAGGGTCAGCATG 58.855 50.000 0.00 0.00 41.44 4.06
3316 3502 9.043548 AGTACATCACCTACATTAACCTTTACT 57.956 33.333 0.00 0.00 0.00 2.24
3352 3538 6.893020 AAGGATAGGTTTACTGGTGAGAAT 57.107 37.500 0.00 0.00 0.00 2.40
3383 3569 4.588528 ACAGTTGGTCCAGCATGTATTTTT 59.411 37.500 8.59 0.00 0.00 1.94
3384 3570 4.151883 ACAGTTGGTCCAGCATGTATTTT 58.848 39.130 8.59 0.00 0.00 1.82
3391 3577 1.699634 ACACTACAGTTGGTCCAGCAT 59.300 47.619 8.59 0.00 0.00 3.79
3405 3591 9.128107 CACCAAAATCATAATTTCACACACTAC 57.872 33.333 0.00 0.00 33.93 2.73
3461 3647 8.539544 CCCAAAAGGACATAAAATTATCCAGTT 58.460 33.333 0.00 0.00 38.24 3.16
3494 3707 2.226912 AGATACTAAGACGATCAGGCGC 59.773 50.000 0.00 0.00 33.86 6.53
3520 3733 4.058817 CGAAAAGTTCTGCTGGTCTAGTT 58.941 43.478 0.00 0.00 0.00 2.24
3525 3738 2.854805 GCAACGAAAAGTTCTGCTGGTC 60.855 50.000 0.00 0.00 42.02 4.02
3543 3757 0.528017 TGTGTGCCAGTTTTTCGCAA 59.472 45.000 0.00 0.00 33.57 4.85
3575 3803 7.869800 AGACAAAACAAAAATGCACTTTTTCA 58.130 26.923 2.56 0.00 43.54 2.69
3576 3804 8.629132 CAAGACAAAACAAAAATGCACTTTTTC 58.371 29.630 2.56 0.00 43.54 2.29
3847 4075 3.645212 CCAGATTAGCATCAAGAGGAGGA 59.355 47.826 0.00 0.00 0.00 3.71
3882 4110 3.750371 TGAAATCGAAGCTTTGGGAAGA 58.250 40.909 13.87 1.61 34.71 2.87
3886 4114 4.559153 ACAATTGAAATCGAAGCTTTGGG 58.441 39.130 13.59 0.42 0.00 4.12
3887 4115 6.357198 CAAACAATTGAAATCGAAGCTTTGG 58.643 36.000 13.59 3.02 38.94 3.28
3893 4121 7.307694 TCAGATCCAAACAATTGAAATCGAAG 58.692 34.615 13.59 4.14 38.94 3.79
3896 4124 7.756272 TGATTCAGATCCAAACAATTGAAATCG 59.244 33.333 13.59 4.77 38.94 3.34
3954 4182 5.395325 AAATCAACGAGAATGCGTATGAG 57.605 39.130 0.00 0.00 44.86 2.90
4018 4246 6.578023 AGTTTGGTTAGCATTAGCACAAAAA 58.422 32.000 0.00 0.00 45.49 1.94
4026 4254 6.095440 ACAGGCAATAGTTTGGTTAGCATTAG 59.905 38.462 0.00 0.00 33.22 1.73
4083 4312 1.429930 ATGGCCGTATGGGTGTATGA 58.570 50.000 0.00 0.00 38.44 2.15
4096 4325 2.009774 CAAGAAAGAGTGGTATGGCCG 58.990 52.381 0.00 0.00 41.21 6.13
4097 4326 3.350219 TCAAGAAAGAGTGGTATGGCC 57.650 47.619 0.00 0.00 37.90 5.36
4098 4327 5.649831 AGATTTCAAGAAAGAGTGGTATGGC 59.350 40.000 1.48 0.00 33.32 4.40
4099 4328 7.391554 TCAAGATTTCAAGAAAGAGTGGTATGG 59.608 37.037 1.48 0.00 33.32 2.74
4100 4329 8.327941 TCAAGATTTCAAGAAAGAGTGGTATG 57.672 34.615 1.48 0.00 33.32 2.39
4103 4332 8.924511 TTATCAAGATTTCAAGAAAGAGTGGT 57.075 30.769 1.48 0.00 33.32 4.16
4220 4449 6.023603 TCTTCTACCTTGATACAGGTTTCCT 58.976 40.000 0.00 0.00 45.76 3.36
4226 4455 5.582665 GTGCTTTCTTCTACCTTGATACAGG 59.417 44.000 0.00 0.00 40.23 4.00
4320 4549 6.206634 TGAAAGGCTAAAAGTGGTCAATAGTG 59.793 38.462 0.00 0.00 0.00 2.74
4329 4558 5.514274 TGAGTTTGAAAGGCTAAAAGTGG 57.486 39.130 0.00 0.00 0.00 4.00
4339 4568 6.910536 ATAGCGTATCTTGAGTTTGAAAGG 57.089 37.500 0.00 0.00 0.00 3.11
4395 4624 7.121611 ACTGATGATAAACTGTTCAATGCATGA 59.878 33.333 0.00 0.00 35.85 3.07
4431 4660 9.606631 AAACAATAAATAACAGAAGTTGGCAAA 57.393 25.926 0.00 0.00 38.69 3.68
4434 4663 9.255304 TGAAAACAATAAATAACAGAAGTTGGC 57.745 29.630 0.00 0.00 38.69 4.52
4494 4723 0.521291 TCGCAGCATAAAGTGGTTGC 59.479 50.000 0.00 0.00 36.12 4.17
4540 4769 2.127708 ACAAACCTCAGTCCCAAGTCT 58.872 47.619 0.00 0.00 0.00 3.24
4566 4795 4.646945 TCAAAGGAAGCCACAATACAAACA 59.353 37.500 0.00 0.00 0.00 2.83
4569 4798 4.220382 CCATCAAAGGAAGCCACAATACAA 59.780 41.667 0.00 0.00 0.00 2.41
4631 4860 3.560636 AACCTTGTGTCAGCTGTAACT 57.439 42.857 14.67 0.00 0.00 2.24
4632 4861 4.319549 GCTTAACCTTGTGTCAGCTGTAAC 60.320 45.833 14.67 13.48 32.72 2.50
4657 4886 4.385358 AATTTCACAGAAACCACCACAC 57.615 40.909 0.00 0.00 0.00 3.82
4721 4952 2.664081 GCTGCAGTAGAGGGCCAGT 61.664 63.158 16.64 0.00 0.00 4.00
4758 4989 1.613437 CAACAAAAGGCCCCACAGTAG 59.387 52.381 0.00 0.00 0.00 2.57
4759 4990 1.698506 CAACAAAAGGCCCCACAGTA 58.301 50.000 0.00 0.00 0.00 2.74
4760 4991 1.048160 CCAACAAAAGGCCCCACAGT 61.048 55.000 0.00 0.00 0.00 3.55
4761 4992 1.048160 ACCAACAAAAGGCCCCACAG 61.048 55.000 0.00 0.00 0.00 3.66
4771 5002 2.582052 CCTACCAGAGCACCAACAAAA 58.418 47.619 0.00 0.00 0.00 2.44
4865 5096 8.989131 ACAGGAGCACTATTTACCTATCTTTTA 58.011 33.333 0.00 0.00 0.00 1.52
4867 5098 7.092846 ACACAGGAGCACTATTTACCTATCTTT 60.093 37.037 0.00 0.00 0.00 2.52
4869 5100 5.900123 ACACAGGAGCACTATTTACCTATCT 59.100 40.000 0.00 0.00 0.00 1.98
4870 5101 6.041069 AGACACAGGAGCACTATTTACCTATC 59.959 42.308 0.00 0.00 0.00 2.08
4871 5102 5.900123 AGACACAGGAGCACTATTTACCTAT 59.100 40.000 0.00 0.00 0.00 2.57
4872 5103 5.269991 AGACACAGGAGCACTATTTACCTA 58.730 41.667 0.00 0.00 0.00 3.08
4873 5104 4.097418 AGACACAGGAGCACTATTTACCT 58.903 43.478 0.00 0.00 0.00 3.08
4874 5105 4.473477 AGACACAGGAGCACTATTTACC 57.527 45.455 0.00 0.00 0.00 2.85
4875 5106 7.045126 AGATAGACACAGGAGCACTATTTAC 57.955 40.000 0.00 0.00 0.00 2.01
4876 5107 7.230913 GGTAGATAGACACAGGAGCACTATTTA 59.769 40.741 0.00 0.00 0.00 1.40
4891 5122 7.201938 CGGGTATAACTTTTGGGTAGATAGACA 60.202 40.741 0.00 0.00 0.00 3.41
4908 5139 7.229907 ACCATGAAATTGATAACCGGGTATAAC 59.770 37.037 13.23 1.04 0.00 1.89
5105 5534 6.240894 TGATTCTGTGAAAGGAGCAAATACT 58.759 36.000 0.00 0.00 22.13 2.12
5108 5537 6.600882 ATTGATTCTGTGAAAGGAGCAAAT 57.399 33.333 0.00 0.00 43.01 2.32
5135 5564 2.957006 ACTTACAGTGAACTCGGTGACT 59.043 45.455 0.00 0.00 0.00 3.41
5168 5597 4.730949 TGCAACTATGACAGGTAGGTAC 57.269 45.455 0.00 0.00 0.00 3.34
5169 5598 5.950544 ATTGCAACTATGACAGGTAGGTA 57.049 39.130 0.00 0.00 0.00 3.08
5170 5599 4.844349 ATTGCAACTATGACAGGTAGGT 57.156 40.909 0.00 0.00 0.00 3.08
5171 5600 5.185454 TCAATTGCAACTATGACAGGTAGG 58.815 41.667 0.00 0.00 0.00 3.18
5172 5601 6.741992 TTCAATTGCAACTATGACAGGTAG 57.258 37.500 0.00 0.00 0.00 3.18
5197 5628 7.229306 TGCATGAACAGAGAAGAATTAACACTT 59.771 33.333 0.00 0.00 0.00 3.16
5198 5629 6.712095 TGCATGAACAGAGAAGAATTAACACT 59.288 34.615 0.00 0.00 0.00 3.55
5201 5632 8.976986 AAATGCATGAACAGAGAAGAATTAAC 57.023 30.769 0.00 0.00 0.00 2.01
5202 5633 9.017509 AGAAATGCATGAACAGAGAAGAATTAA 57.982 29.630 0.00 0.00 0.00 1.40
5203 5634 8.571461 AGAAATGCATGAACAGAGAAGAATTA 57.429 30.769 0.00 0.00 0.00 1.40
5204 5635 7.463961 AGAAATGCATGAACAGAGAAGAATT 57.536 32.000 0.00 0.00 0.00 2.17
5289 5720 1.848652 ACGCTACTTCTCAAGCCCTA 58.151 50.000 0.00 0.00 35.22 3.53
5321 5752 4.835284 TCAACCAAAAGAAAGCCCTTTT 57.165 36.364 0.00 0.00 44.51 2.27
5336 5767 6.384015 ACACTAGATACAGGATCAATCAACCA 59.616 38.462 0.00 0.00 36.98 3.67
5356 5787 7.820872 GGCAGAAGGTAATTTAGTAACACACTA 59.179 37.037 0.00 0.00 38.80 2.74
5376 5807 3.642078 CCCGTATCTGGGGCAGAA 58.358 61.111 0.00 0.00 44.04 3.02
5442 5874 1.446272 GCCTCAGTACGACACCAGC 60.446 63.158 0.00 0.00 0.00 4.85
5500 5932 3.447586 TGTTGTACTCTGGTAGCTCCATC 59.552 47.826 5.50 0.00 46.12 3.51
5548 5980 1.473434 GGTAAGGATGGGCAGTTCTCG 60.473 57.143 0.00 0.00 0.00 4.04
5628 6061 6.329496 ACATAATTTAAGCACCGGAAACATG 58.671 36.000 9.46 7.80 0.00 3.21
5674 6114 2.238521 CAGCCACCTGTACCAAACATT 58.761 47.619 0.00 0.00 37.50 2.71
5734 6175 5.159209 GTTCAGAAACTGCTACGCTAACTA 58.841 41.667 0.00 0.00 32.36 2.24
5764 6205 4.760530 TCTATCCAGGTTCACATTGGAG 57.239 45.455 8.04 0.00 43.71 3.86
5786 6227 4.457603 AGTTCTATCTATGCGAGCGAATCT 59.542 41.667 0.00 0.00 0.00 2.40
5791 6232 4.290969 TGAAAGTTCTATCTATGCGAGCG 58.709 43.478 0.00 0.00 0.00 5.03
5815 6256 6.255453 TCAACAACAAGTTTTCAAAGCTATGC 59.745 34.615 0.00 0.00 38.74 3.14
5817 6258 8.196771 TCATCAACAACAAGTTTTCAAAGCTAT 58.803 29.630 0.00 0.00 38.74 2.97
5818 6259 7.542890 TCATCAACAACAAGTTTTCAAAGCTA 58.457 30.769 0.00 0.00 38.74 3.32
5819 6260 6.397272 TCATCAACAACAAGTTTTCAAAGCT 58.603 32.000 0.00 0.00 38.74 3.74
5820 6261 6.645700 TCATCAACAACAAGTTTTCAAAGC 57.354 33.333 0.00 0.00 38.74 3.51
5821 6262 8.410030 TCATCATCAACAACAAGTTTTCAAAG 57.590 30.769 0.00 0.00 38.74 2.77
5822 6263 8.945481 ATCATCATCAACAACAAGTTTTCAAA 57.055 26.923 0.00 0.00 38.74 2.69
5830 6271 5.100259 GCCAAGATCATCATCAACAACAAG 58.900 41.667 0.00 0.00 0.00 3.16
5831 6272 4.768448 AGCCAAGATCATCATCAACAACAA 59.232 37.500 0.00 0.00 0.00 2.83
5832 6273 4.338012 AGCCAAGATCATCATCAACAACA 58.662 39.130 0.00 0.00 0.00 3.33
5946 6387 3.556004 GGCCTAGCCTCTGAATGTATGTC 60.556 52.174 0.00 0.00 46.69 3.06
5967 6408 5.106673 GGACACATAACCTCGAAAAGAAAGG 60.107 44.000 0.00 0.00 36.21 3.11
6160 6604 2.637165 ACCTCTGAGAATGGACCCTTT 58.363 47.619 6.17 0.00 0.00 3.11
6184 6628 4.894784 TCGAATTATATTCAGGCACTCCC 58.105 43.478 0.00 0.00 34.60 4.30
6223 6667 1.003118 ACAGGGTGCATTTAAGCTCGA 59.997 47.619 0.00 0.00 34.99 4.04
6434 7019 0.251474 TGCTCTGGGCTCAAATGCTT 60.251 50.000 0.00 0.00 42.39 3.91
6448 7033 2.363680 CGGAATGTGGAGTATCTGCTCT 59.636 50.000 0.00 0.00 35.89 4.09
6466 7052 1.675219 GTTGAGGTAGTTGGCCGGA 59.325 57.895 5.05 0.00 0.00 5.14
6477 7063 2.838202 ACTTCATCCATACGGTTGAGGT 59.162 45.455 0.00 0.00 43.12 3.85
6543 7129 2.542020 TCGCCTTGAAGAACATGTCA 57.458 45.000 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.