Multiple sequence alignment - TraesCS5A01G201800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G201800 chr5A 100.000 9135 0 0 1 9135 408199063 408189929 0.000000e+00 16870.0
1 TraesCS5A01G201800 chr5A 91.617 167 11 1 7345 7511 6597368 6597531 2.570000e-55 228.0
2 TraesCS5A01G201800 chr5A 89.888 178 13 3 7350 7527 320214402 320214230 3.320000e-54 224.0
3 TraesCS5A01G201800 chr5D 95.128 8333 281 45 261 8533 314429238 314420971 0.000000e+00 13023.0
4 TraesCS5A01G201800 chr5D 91.617 167 11 1 7345 7511 59947845 59947682 2.570000e-55 228.0
5 TraesCS5A01G201800 chr5B 95.341 5066 165 28 672 5695 362137677 362132641 0.000000e+00 7982.0
6 TraesCS5A01G201800 chr5B 97.876 1271 22 2 5691 6960 362132482 362131216 0.000000e+00 2193.0
7 TraesCS5A01G201800 chr5B 95.988 1022 40 1 7512 8533 362130671 362129651 0.000000e+00 1659.0
8 TraesCS5A01G201800 chr5B 94.602 389 13 2 6960 7347 362131054 362130673 6.110000e-166 595.0
9 TraesCS5A01G201800 chr4D 95.462 595 23 2 8544 9135 57398343 57398936 0.000000e+00 946.0
10 TraesCS5A01G201800 chr4A 95.294 595 25 1 8544 9135 667151999 667152593 0.000000e+00 941.0
11 TraesCS5A01G201800 chr7A 88.621 747 69 10 1300 2043 8735547 8736280 0.000000e+00 894.0
12 TraesCS5A01G201800 chrUn 92.991 585 37 3 8544 9125 96615639 96615056 0.000000e+00 850.0
13 TraesCS5A01G201800 chr2B 85.275 781 80 16 1300 2074 105378624 105377873 0.000000e+00 773.0
14 TraesCS5A01G201800 chr2B 92.353 170 11 2 7344 7511 212577252 212577421 3.300000e-59 241.0
15 TraesCS5A01G201800 chr1A 92.373 236 18 0 8900 9135 6770067 6770302 4.090000e-88 337.0
16 TraesCS5A01G201800 chr7B 91.617 167 11 1 7345 7511 102234480 102234317 2.570000e-55 228.0
17 TraesCS5A01G201800 chr6D 90.698 172 12 2 7345 7516 90112236 90112403 9.230000e-55 226.0
18 TraesCS5A01G201800 chr6A 90.698 172 12 2 7345 7516 108947866 108947699 9.230000e-55 226.0
19 TraesCS5A01G201800 chr6A 88.718 195 7 5 8947 9135 616409085 616408900 3.320000e-54 224.0
20 TraesCS5A01G201800 chr2A 89.831 177 14 2 7347 7523 184561154 184561326 3.320000e-54 224.0
21 TraesCS5A01G201800 chr4B 96.970 33 1 0 276 308 364690187 364690219 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G201800 chr5A 408189929 408199063 9134 True 16870.00 16870 100.00000 1 9135 1 chr5A.!!$R2 9134
1 TraesCS5A01G201800 chr5D 314420971 314429238 8267 True 13023.00 13023 95.12800 261 8533 1 chr5D.!!$R2 8272
2 TraesCS5A01G201800 chr5B 362129651 362137677 8026 True 3107.25 7982 95.95175 672 8533 4 chr5B.!!$R1 7861
3 TraesCS5A01G201800 chr4D 57398343 57398936 593 False 946.00 946 95.46200 8544 9135 1 chr4D.!!$F1 591
4 TraesCS5A01G201800 chr4A 667151999 667152593 594 False 941.00 941 95.29400 8544 9135 1 chr4A.!!$F1 591
5 TraesCS5A01G201800 chr7A 8735547 8736280 733 False 894.00 894 88.62100 1300 2043 1 chr7A.!!$F1 743
6 TraesCS5A01G201800 chrUn 96615056 96615639 583 True 850.00 850 92.99100 8544 9125 1 chrUn.!!$R1 581
7 TraesCS5A01G201800 chr2B 105377873 105378624 751 True 773.00 773 85.27500 1300 2074 1 chr2B.!!$R1 774

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.031449 ACCGGCGATGTTTGTTTTGG 59.969 50.000 9.3 0.00 0.00 3.28 F
52 53 0.037326 TTGGAGCTGACGCCACTAAG 60.037 55.000 0.0 0.00 46.40 2.18 F
169 170 0.109153 CATCATTGATCCCGGCCTCA 59.891 55.000 0.0 0.00 0.00 3.86 F
171 172 0.109153 TCATTGATCCCGGCCTCATG 59.891 55.000 0.0 2.32 0.00 3.07 F
1601 1631 0.181350 GGGATGCCTGGAAATCGTCT 59.819 55.000 0.0 0.00 0.00 4.18 F
2271 2322 0.465460 ACTGGCAAACCACGATGTGT 60.465 50.000 0.0 0.00 42.67 3.72 F
2431 2487 0.324645 AAATAGCCACCCTTGCCCAG 60.325 55.000 0.0 0.00 0.00 4.45 F
3032 3098 0.595095 CTCCTTGCAGCCACACTTTC 59.405 55.000 0.0 0.00 0.00 2.62 F
3239 3305 0.734889 CCGCATGATCTTCCACAACC 59.265 55.000 0.0 0.00 0.00 3.77 F
4879 4955 0.324943 CCGGGAACACCTCACAGAAT 59.675 55.000 0.0 0.00 36.97 2.40 F
5644 5720 1.795286 GCGTGATTAGCAGGATAGCAC 59.205 52.381 0.0 0.00 36.85 4.40 F
6930 7170 0.251916 TGATTTCCTGCGGTGGTAGG 59.748 55.000 0.0 0.00 46.49 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 1817 1.463444 GCGTGAATATAATCCCCGTGC 59.537 52.381 0.00 0.00 0.00 5.34 R
2008 2042 3.798202 GAGTGGCCATAAACTCTACCAG 58.202 50.000 9.72 0.00 39.79 4.00 R
2135 2186 0.474184 ACACCCTAAACTGCAGCACT 59.526 50.000 15.27 0.20 0.00 4.40 R
2139 2190 2.146342 CAGACACACCCTAAACTGCAG 58.854 52.381 13.48 13.48 0.00 4.41 R
2431 2487 2.810852 GCTAGCAATCTCCTACCAATGC 59.189 50.000 10.63 0.00 0.00 3.56 R
3692 3760 0.524862 GCCACAGCTTTCACATCTGG 59.475 55.000 0.00 0.00 35.50 3.86 R
3911 3980 3.072915 TCACTGAATCCTCATTGTGTGGT 59.927 43.478 0.00 0.00 34.63 4.16 R
4879 4955 1.823470 GTGCCTGCTGTTGGTGACA 60.823 57.895 0.00 0.00 39.83 3.58 R
5021 5097 2.358898 ACAGGTTGTTTCATGACAGTGC 59.641 45.455 0.00 0.00 0.00 4.40 R
6007 6246 0.320374 TACCAACCTGAGGAGTTGCG 59.680 55.000 4.99 0.00 42.63 4.85 R
7629 8032 0.034477 ACCCGGTAAGCATTCTTGGG 60.034 55.000 0.00 0.00 38.41 4.12 R
8486 8889 1.337703 GCAGAGAACACACATTTGGCA 59.662 47.619 0.00 0.00 0.00 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.103410 GCCAAAATACCGGCGATGT 58.897 52.632 9.30 0.04 38.82 3.06
28 29 0.454196 GCCAAAATACCGGCGATGTT 59.546 50.000 9.30 0.00 38.82 2.71
29 30 1.135228 GCCAAAATACCGGCGATGTTT 60.135 47.619 9.30 0.00 38.82 2.83
30 31 2.525055 CCAAAATACCGGCGATGTTTG 58.475 47.619 9.30 12.71 0.00 2.93
31 32 2.094957 CCAAAATACCGGCGATGTTTGT 60.095 45.455 9.30 0.00 0.00 2.83
32 33 3.570559 CAAAATACCGGCGATGTTTGTT 58.429 40.909 9.30 0.00 0.00 2.83
33 34 3.926821 AAATACCGGCGATGTTTGTTT 57.073 38.095 9.30 0.00 0.00 2.83
34 35 3.926821 AATACCGGCGATGTTTGTTTT 57.073 38.095 9.30 0.00 0.00 2.43
35 36 2.690173 TACCGGCGATGTTTGTTTTG 57.310 45.000 9.30 0.00 0.00 2.44
36 37 0.031449 ACCGGCGATGTTTGTTTTGG 59.969 50.000 9.30 0.00 0.00 3.28
37 38 0.312416 CCGGCGATGTTTGTTTTGGA 59.688 50.000 9.30 0.00 0.00 3.53
38 39 1.665735 CCGGCGATGTTTGTTTTGGAG 60.666 52.381 9.30 0.00 0.00 3.86
39 40 1.418373 GGCGATGTTTGTTTTGGAGC 58.582 50.000 0.00 0.00 0.00 4.70
40 41 1.000274 GGCGATGTTTGTTTTGGAGCT 60.000 47.619 0.00 0.00 0.00 4.09
41 42 2.053627 GCGATGTTTGTTTTGGAGCTG 58.946 47.619 0.00 0.00 0.00 4.24
42 43 2.287547 GCGATGTTTGTTTTGGAGCTGA 60.288 45.455 0.00 0.00 0.00 4.26
43 44 3.300009 CGATGTTTGTTTTGGAGCTGAC 58.700 45.455 0.00 0.00 0.00 3.51
44 45 2.842208 TGTTTGTTTTGGAGCTGACG 57.158 45.000 0.00 0.00 0.00 4.35
45 46 1.202245 TGTTTGTTTTGGAGCTGACGC 60.202 47.619 0.00 0.00 0.00 5.19
46 47 0.383949 TTTGTTTTGGAGCTGACGCC 59.616 50.000 0.00 0.00 36.60 5.68
47 48 0.749818 TTGTTTTGGAGCTGACGCCA 60.750 50.000 0.00 0.00 44.92 5.69
48 49 1.282875 GTTTTGGAGCTGACGCCAC 59.717 57.895 0.00 0.00 46.40 5.01
49 50 1.148273 TTTTGGAGCTGACGCCACT 59.852 52.632 0.00 0.00 46.40 4.00
50 51 0.394938 TTTTGGAGCTGACGCCACTA 59.605 50.000 0.00 0.00 46.40 2.74
51 52 0.394938 TTTGGAGCTGACGCCACTAA 59.605 50.000 0.00 0.00 46.40 2.24
52 53 0.037326 TTGGAGCTGACGCCACTAAG 60.037 55.000 0.00 0.00 46.40 2.18
53 54 1.185618 TGGAGCTGACGCCACTAAGT 61.186 55.000 0.00 0.00 41.32 2.24
54 55 0.815734 GGAGCTGACGCCACTAAGTA 59.184 55.000 0.00 0.00 35.48 2.24
55 56 1.203994 GGAGCTGACGCCACTAAGTAA 59.796 52.381 0.00 0.00 35.48 2.24
56 57 2.260481 GAGCTGACGCCACTAAGTAAC 58.740 52.381 0.00 0.00 36.60 2.50
57 58 1.893801 AGCTGACGCCACTAAGTAACT 59.106 47.619 0.00 0.00 36.60 2.24
58 59 3.087031 AGCTGACGCCACTAAGTAACTA 58.913 45.455 0.00 0.00 36.60 2.24
59 60 3.119566 AGCTGACGCCACTAAGTAACTAC 60.120 47.826 0.00 0.00 36.60 2.73
60 61 3.366679 GCTGACGCCACTAAGTAACTACA 60.367 47.826 0.00 0.00 0.00 2.74
61 62 4.164294 CTGACGCCACTAAGTAACTACAC 58.836 47.826 0.00 0.00 0.00 2.90
62 63 3.057315 TGACGCCACTAAGTAACTACACC 60.057 47.826 0.00 0.00 0.00 4.16
63 64 3.160269 ACGCCACTAAGTAACTACACCT 58.840 45.455 0.00 0.00 0.00 4.00
64 65 4.335416 ACGCCACTAAGTAACTACACCTA 58.665 43.478 0.00 0.00 0.00 3.08
65 66 4.952335 ACGCCACTAAGTAACTACACCTAT 59.048 41.667 0.00 0.00 0.00 2.57
66 67 6.122277 ACGCCACTAAGTAACTACACCTATA 58.878 40.000 0.00 0.00 0.00 1.31
67 68 6.603201 ACGCCACTAAGTAACTACACCTATAA 59.397 38.462 0.00 0.00 0.00 0.98
68 69 7.137426 CGCCACTAAGTAACTACACCTATAAG 58.863 42.308 0.00 0.00 0.00 1.73
69 70 7.432059 GCCACTAAGTAACTACACCTATAAGG 58.568 42.308 0.00 0.00 42.49 2.69
70 71 7.471120 GCCACTAAGTAACTACACCTATAAGGG 60.471 44.444 0.00 0.00 40.58 3.95
71 72 7.562821 CCACTAAGTAACTACACCTATAAGGGT 59.437 40.741 0.00 0.00 40.58 4.34
72 73 8.975295 CACTAAGTAACTACACCTATAAGGGTT 58.025 37.037 0.00 0.00 40.58 4.11
73 74 9.552695 ACTAAGTAACTACACCTATAAGGGTTT 57.447 33.333 0.00 0.00 40.58 3.27
76 77 7.855375 AGTAACTACACCTATAAGGGTTTTCC 58.145 38.462 0.00 0.00 40.58 3.13
86 87 1.201424 AGGGTTTTCCTACTAGCGGG 58.799 55.000 0.00 0.00 45.98 6.13
87 88 0.179702 GGGTTTTCCTACTAGCGGGG 59.820 60.000 0.00 0.00 40.46 5.73
88 89 0.179702 GGTTTTCCTACTAGCGGGGG 59.820 60.000 0.00 0.00 36.94 5.40
102 103 3.647771 GGGGGCGAAGGTGGAGTT 61.648 66.667 0.00 0.00 0.00 3.01
103 104 2.046217 GGGGCGAAGGTGGAGTTC 60.046 66.667 0.00 0.00 0.00 3.01
104 105 2.046217 GGGCGAAGGTGGAGTTCC 60.046 66.667 0.00 0.00 0.00 3.62
105 106 2.747686 GGCGAAGGTGGAGTTCCA 59.252 61.111 0.00 0.00 45.30 3.53
119 120 1.381327 TTCCACCTAGGAGGCGGAG 60.381 63.158 19.83 0.00 46.48 4.63
120 121 2.840102 CCACCTAGGAGGCGGAGG 60.840 72.222 17.98 1.55 40.03 4.30
150 151 3.867771 CGGAGCAAGCACACTCTC 58.132 61.111 0.00 0.00 33.29 3.20
151 152 1.005748 CGGAGCAAGCACACTCTCA 60.006 57.895 0.00 0.00 33.29 3.27
152 153 0.390866 CGGAGCAAGCACACTCTCAT 60.391 55.000 0.00 0.00 33.29 2.90
153 154 1.367659 GGAGCAAGCACACTCTCATC 58.632 55.000 0.00 0.00 33.29 2.92
154 155 1.338484 GGAGCAAGCACACTCTCATCA 60.338 52.381 0.00 0.00 33.29 3.07
155 156 2.630158 GAGCAAGCACACTCTCATCAT 58.370 47.619 0.00 0.00 0.00 2.45
156 157 3.008330 GAGCAAGCACACTCTCATCATT 58.992 45.455 0.00 0.00 0.00 2.57
157 158 2.747989 AGCAAGCACACTCTCATCATTG 59.252 45.455 0.00 0.00 0.00 2.82
158 159 2.745821 GCAAGCACACTCTCATCATTGA 59.254 45.455 0.00 0.00 0.00 2.57
159 160 3.377485 GCAAGCACACTCTCATCATTGAT 59.623 43.478 0.00 0.00 0.00 2.57
160 161 4.496010 GCAAGCACACTCTCATCATTGATC 60.496 45.833 0.00 0.00 0.00 2.92
161 162 3.806380 AGCACACTCTCATCATTGATCC 58.194 45.455 0.00 0.00 0.00 3.36
162 163 2.877168 GCACACTCTCATCATTGATCCC 59.123 50.000 0.00 0.00 0.00 3.85
163 164 3.129109 CACACTCTCATCATTGATCCCG 58.871 50.000 0.00 0.00 0.00 5.14
164 165 2.103771 ACACTCTCATCATTGATCCCGG 59.896 50.000 0.00 0.00 0.00 5.73
165 166 1.071385 ACTCTCATCATTGATCCCGGC 59.929 52.381 0.00 0.00 0.00 6.13
166 167 0.397941 TCTCATCATTGATCCCGGCC 59.602 55.000 0.00 0.00 0.00 6.13
167 168 0.399454 CTCATCATTGATCCCGGCCT 59.601 55.000 0.00 0.00 0.00 5.19
168 169 0.397941 TCATCATTGATCCCGGCCTC 59.602 55.000 0.00 0.00 0.00 4.70
169 170 0.109153 CATCATTGATCCCGGCCTCA 59.891 55.000 0.00 0.00 0.00 3.86
170 171 1.070604 ATCATTGATCCCGGCCTCAT 58.929 50.000 0.00 0.00 0.00 2.90
171 172 0.109153 TCATTGATCCCGGCCTCATG 59.891 55.000 0.00 2.32 0.00 3.07
172 173 0.109153 CATTGATCCCGGCCTCATGA 59.891 55.000 0.00 0.00 0.00 3.07
173 174 1.070604 ATTGATCCCGGCCTCATGAT 58.929 50.000 0.00 0.00 0.00 2.45
174 175 0.397941 TTGATCCCGGCCTCATGATC 59.602 55.000 0.00 7.40 35.33 2.92
175 176 0.763986 TGATCCCGGCCTCATGATCA 60.764 55.000 12.97 12.97 40.81 2.92
176 177 0.397941 GATCCCGGCCTCATGATCAA 59.602 55.000 0.00 0.00 34.97 2.57
177 178 0.846015 ATCCCGGCCTCATGATCAAA 59.154 50.000 0.00 0.00 0.00 2.69
178 179 0.623194 TCCCGGCCTCATGATCAAAA 59.377 50.000 0.00 0.00 0.00 2.44
179 180 1.005332 TCCCGGCCTCATGATCAAAAA 59.995 47.619 0.00 0.00 0.00 1.94
180 181 1.134946 CCCGGCCTCATGATCAAAAAC 59.865 52.381 0.00 0.00 0.00 2.43
181 182 1.134946 CCGGCCTCATGATCAAAAACC 59.865 52.381 0.00 0.00 0.00 3.27
182 183 1.818060 CGGCCTCATGATCAAAAACCA 59.182 47.619 0.00 0.00 0.00 3.67
183 184 2.159338 CGGCCTCATGATCAAAAACCAG 60.159 50.000 0.00 0.00 0.00 4.00
184 185 2.417787 GGCCTCATGATCAAAAACCAGC 60.418 50.000 0.00 0.00 0.00 4.85
185 186 2.417787 GCCTCATGATCAAAAACCAGCC 60.418 50.000 0.00 0.00 0.00 4.85
186 187 3.094572 CCTCATGATCAAAAACCAGCCT 58.905 45.455 0.00 0.00 0.00 4.58
187 188 3.512724 CCTCATGATCAAAAACCAGCCTT 59.487 43.478 0.00 0.00 0.00 4.35
188 189 4.381292 CCTCATGATCAAAAACCAGCCTTC 60.381 45.833 0.00 0.00 0.00 3.46
189 190 3.511146 TCATGATCAAAAACCAGCCTTCC 59.489 43.478 0.00 0.00 0.00 3.46
190 191 3.243359 TGATCAAAAACCAGCCTTCCT 57.757 42.857 0.00 0.00 0.00 3.36
191 192 3.575805 TGATCAAAAACCAGCCTTCCTT 58.424 40.909 0.00 0.00 0.00 3.36
192 193 3.321682 TGATCAAAAACCAGCCTTCCTTG 59.678 43.478 0.00 0.00 0.00 3.61
193 194 3.025322 TCAAAAACCAGCCTTCCTTGA 57.975 42.857 0.00 0.00 0.00 3.02
194 195 2.693074 TCAAAAACCAGCCTTCCTTGAC 59.307 45.455 0.00 0.00 0.00 3.18
195 196 2.695147 CAAAAACCAGCCTTCCTTGACT 59.305 45.455 0.00 0.00 0.00 3.41
196 197 2.278332 AAACCAGCCTTCCTTGACTC 57.722 50.000 0.00 0.00 0.00 3.36
197 198 1.140312 AACCAGCCTTCCTTGACTCA 58.860 50.000 0.00 0.00 0.00 3.41
198 199 0.398318 ACCAGCCTTCCTTGACTCAC 59.602 55.000 0.00 0.00 0.00 3.51
199 200 0.689623 CCAGCCTTCCTTGACTCACT 59.310 55.000 0.00 0.00 0.00 3.41
200 201 1.072965 CCAGCCTTCCTTGACTCACTT 59.927 52.381 0.00 0.00 0.00 3.16
201 202 2.487986 CCAGCCTTCCTTGACTCACTTT 60.488 50.000 0.00 0.00 0.00 2.66
202 203 3.244561 CCAGCCTTCCTTGACTCACTTTA 60.245 47.826 0.00 0.00 0.00 1.85
203 204 3.999663 CAGCCTTCCTTGACTCACTTTAG 59.000 47.826 0.00 0.00 0.00 1.85
204 205 3.904339 AGCCTTCCTTGACTCACTTTAGA 59.096 43.478 0.00 0.00 0.00 2.10
205 206 3.997681 GCCTTCCTTGACTCACTTTAGAC 59.002 47.826 0.00 0.00 0.00 2.59
206 207 4.570930 CCTTCCTTGACTCACTTTAGACC 58.429 47.826 0.00 0.00 0.00 3.85
207 208 3.936372 TCCTTGACTCACTTTAGACCG 57.064 47.619 0.00 0.00 0.00 4.79
208 209 3.493334 TCCTTGACTCACTTTAGACCGA 58.507 45.455 0.00 0.00 0.00 4.69
209 210 3.893200 TCCTTGACTCACTTTAGACCGAA 59.107 43.478 0.00 0.00 0.00 4.30
210 211 4.527038 TCCTTGACTCACTTTAGACCGAAT 59.473 41.667 0.00 0.00 0.00 3.34
211 212 4.627467 CCTTGACTCACTTTAGACCGAATG 59.373 45.833 0.00 0.00 0.00 2.67
212 213 5.462530 TTGACTCACTTTAGACCGAATGA 57.537 39.130 0.00 0.00 0.00 2.57
213 214 5.060662 TGACTCACTTTAGACCGAATGAG 57.939 43.478 0.00 0.00 39.56 2.90
214 215 4.765339 TGACTCACTTTAGACCGAATGAGA 59.235 41.667 6.08 0.00 37.57 3.27
215 216 5.106118 TGACTCACTTTAGACCGAATGAGAG 60.106 44.000 6.08 0.00 37.57 3.20
216 217 4.158764 ACTCACTTTAGACCGAATGAGAGG 59.841 45.833 6.08 0.00 37.57 3.69
217 218 4.087182 TCACTTTAGACCGAATGAGAGGT 58.913 43.478 0.00 0.00 44.64 3.85
218 219 4.527038 TCACTTTAGACCGAATGAGAGGTT 59.473 41.667 0.00 0.00 41.51 3.50
219 220 5.713389 TCACTTTAGACCGAATGAGAGGTTA 59.287 40.000 0.00 0.00 41.51 2.85
220 221 6.209986 TCACTTTAGACCGAATGAGAGGTTAA 59.790 38.462 0.00 0.00 41.51 2.01
221 222 6.531948 CACTTTAGACCGAATGAGAGGTTAAG 59.468 42.308 0.00 0.00 41.51 1.85
222 223 5.593679 TTAGACCGAATGAGAGGTTAAGG 57.406 43.478 0.00 0.00 41.51 2.69
223 224 2.168728 AGACCGAATGAGAGGTTAAGGC 59.831 50.000 0.00 0.00 41.51 4.35
224 225 1.134788 ACCGAATGAGAGGTTAAGGCG 60.135 52.381 0.00 0.00 37.49 5.52
225 226 1.136305 CCGAATGAGAGGTTAAGGCGA 59.864 52.381 0.00 0.00 0.00 5.54
226 227 2.418197 CCGAATGAGAGGTTAAGGCGAA 60.418 50.000 0.00 0.00 0.00 4.70
227 228 2.603560 CGAATGAGAGGTTAAGGCGAAC 59.396 50.000 0.00 0.00 0.00 3.95
240 241 4.379221 CGAACCGTCGTCTCATCC 57.621 61.111 0.00 0.00 42.53 3.51
241 242 1.504900 CGAACCGTCGTCTCATCCA 59.495 57.895 0.00 0.00 42.53 3.41
242 243 0.797249 CGAACCGTCGTCTCATCCAC 60.797 60.000 0.00 0.00 42.53 4.02
243 244 0.458025 GAACCGTCGTCTCATCCACC 60.458 60.000 0.00 0.00 0.00 4.61
244 245 0.898789 AACCGTCGTCTCATCCACCT 60.899 55.000 0.00 0.00 0.00 4.00
245 246 1.313812 ACCGTCGTCTCATCCACCTC 61.314 60.000 0.00 0.00 0.00 3.85
246 247 1.433879 CGTCGTCTCATCCACCTCC 59.566 63.158 0.00 0.00 0.00 4.30
247 248 1.433879 GTCGTCTCATCCACCTCCG 59.566 63.158 0.00 0.00 0.00 4.63
248 249 2.105128 CGTCTCATCCACCTCCGC 59.895 66.667 0.00 0.00 0.00 5.54
249 250 2.105128 GTCTCATCCACCTCCGCG 59.895 66.667 0.00 0.00 0.00 6.46
250 251 2.044352 TCTCATCCACCTCCGCGA 60.044 61.111 8.23 0.00 0.00 5.87
251 252 2.105128 CTCATCCACCTCCGCGAC 59.895 66.667 8.23 0.00 0.00 5.19
252 253 2.678580 TCATCCACCTCCGCGACA 60.679 61.111 8.23 0.00 0.00 4.35
253 254 2.021068 CTCATCCACCTCCGCGACAT 62.021 60.000 8.23 0.00 0.00 3.06
254 255 1.884464 CATCCACCTCCGCGACATG 60.884 63.158 8.23 0.00 0.00 3.21
255 256 2.058001 ATCCACCTCCGCGACATGA 61.058 57.895 8.23 0.00 0.00 3.07
256 257 2.021068 ATCCACCTCCGCGACATGAG 62.021 60.000 8.23 5.24 0.00 2.90
257 258 2.710902 CCACCTCCGCGACATGAGA 61.711 63.158 8.23 0.00 0.00 3.27
258 259 1.517257 CACCTCCGCGACATGAGAC 60.517 63.158 8.23 0.00 0.00 3.36
259 260 1.679305 ACCTCCGCGACATGAGACT 60.679 57.895 8.23 0.00 0.00 3.24
292 293 2.819595 CCGCCAATGACCACGAGG 60.820 66.667 0.00 0.00 42.21 4.63
309 310 2.202756 GCCGACGGCTCCTACAAG 60.203 66.667 31.30 0.00 46.69 3.16
326 327 3.189606 ACAAGGGGGTCATCAACATCTA 58.810 45.455 0.00 0.00 0.00 1.98
358 359 7.688989 GCGAGTATGAAGTGTAGTTATCTATCG 59.311 40.741 0.00 0.00 0.00 2.92
362 363 9.814507 GTATGAAGTGTAGTTATCTATCGAGTG 57.185 37.037 0.00 0.00 0.00 3.51
370 371 9.258826 TGTAGTTATCTATCGAGTGTAGTTCTC 57.741 37.037 0.00 0.00 0.00 2.87
380 381 5.154932 CGAGTGTAGTTCTCGTTTCAATCT 58.845 41.667 7.10 0.00 46.22 2.40
382 383 4.686554 AGTGTAGTTCTCGTTTCAATCTGC 59.313 41.667 0.00 0.00 0.00 4.26
385 386 3.909430 AGTTCTCGTTTCAATCTGCGTA 58.091 40.909 0.00 0.00 0.00 4.42
387 388 4.748102 AGTTCTCGTTTCAATCTGCGTAAA 59.252 37.500 0.00 0.00 0.00 2.01
388 389 4.640805 TCTCGTTTCAATCTGCGTAAAC 57.359 40.909 0.00 0.00 0.00 2.01
389 390 3.430895 TCTCGTTTCAATCTGCGTAAACC 59.569 43.478 0.00 0.00 0.00 3.27
390 391 3.395639 TCGTTTCAATCTGCGTAAACCT 58.604 40.909 0.00 0.00 0.00 3.50
391 392 3.185594 TCGTTTCAATCTGCGTAAACCTG 59.814 43.478 0.00 0.00 0.00 4.00
392 393 3.059188 CGTTTCAATCTGCGTAAACCTGT 60.059 43.478 0.00 0.00 0.00 4.00
393 394 4.219033 GTTTCAATCTGCGTAAACCTGTG 58.781 43.478 0.00 0.00 0.00 3.66
425 426 3.760738 TGTTGCATGTAGTTGGATGGAA 58.239 40.909 0.00 0.00 0.00 3.53
433 434 3.849574 TGTAGTTGGATGGAATTGAGGGA 59.150 43.478 0.00 0.00 0.00 4.20
435 436 4.614967 AGTTGGATGGAATTGAGGGATT 57.385 40.909 0.00 0.00 0.00 3.01
460 461 2.203294 AAGGGTGTGGTTGCGGAC 60.203 61.111 0.00 0.00 0.00 4.79
479 480 1.656818 CGCGTTCAAATGAGGGGCAT 61.657 55.000 0.00 0.00 39.43 4.40
481 482 1.755179 CGTTCAAATGAGGGGCATCT 58.245 50.000 0.00 0.00 35.78 2.90
483 484 2.726821 GTTCAAATGAGGGGCATCTGA 58.273 47.619 0.00 0.00 35.78 3.27
492 493 0.329596 GGGGCATCTGACTCCTGTTT 59.670 55.000 0.00 0.00 0.00 2.83
515 516 0.308684 GACACGTCCGCGGACATATA 59.691 55.000 46.26 18.47 44.77 0.86
516 517 0.956633 ACACGTCCGCGGACATATAT 59.043 50.000 46.26 28.89 44.77 0.86
532 535 7.556844 GGACATATATAGTCGGATTTGTCCAT 58.443 38.462 17.32 0.00 45.81 3.41
534 537 9.436957 GACATATATAGTCGGATTTGTCCATTT 57.563 33.333 0.00 0.00 31.60 2.32
535 538 9.793259 ACATATATAGTCGGATTTGTCCATTTT 57.207 29.630 0.00 0.00 0.00 1.82
549 552 3.689649 GTCCATTTTCGGTTGTAGATGCT 59.310 43.478 0.00 0.00 0.00 3.79
561 564 4.128925 TGTAGATGCTCTGAACACCATC 57.871 45.455 0.00 0.00 35.49 3.51
579 582 5.356190 CACCATCACATCCCTTCATATATGC 59.644 44.000 7.92 0.00 0.00 3.14
591 594 7.349065 TCCCTTCATATATGCTCCACATCATAT 59.651 37.037 7.92 0.00 40.38 1.78
595 598 8.198807 TCATATATGCTCCACATCATATAGGG 57.801 38.462 7.92 6.04 39.84 3.53
684 709 6.287589 ACATTCTCTCACTATTCCGTCTTT 57.712 37.500 0.00 0.00 0.00 2.52
720 745 4.182693 TGAACACGGTTCGTCTGAATAT 57.817 40.909 10.76 0.00 38.32 1.28
721 746 5.313520 TGAACACGGTTCGTCTGAATATA 57.686 39.130 10.76 0.00 38.32 0.86
880 907 2.484264 CCCACAAAGATCCAAACGAGAC 59.516 50.000 0.00 0.00 0.00 3.36
921 948 2.689034 CCACTCCCACTCCCTCCC 60.689 72.222 0.00 0.00 0.00 4.30
922 949 2.452114 CACTCCCACTCCCTCCCT 59.548 66.667 0.00 0.00 0.00 4.20
923 950 1.687493 CACTCCCACTCCCTCCCTC 60.687 68.421 0.00 0.00 0.00 4.30
924 951 2.041405 CTCCCACTCCCTCCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
962 989 2.663196 CCAACCCCTCCTCGTCAC 59.337 66.667 0.00 0.00 0.00 3.67
1480 1508 2.763215 GTGGAATCAGGGGGCACA 59.237 61.111 0.00 0.00 0.00 4.57
1508 1536 9.314321 ACTATTTACGATTTGATTTGACGATCT 57.686 29.630 0.00 0.00 0.00 2.75
1549 1579 7.220108 GGATTTAATTGACGCTACATTTTGGTC 59.780 37.037 0.00 0.00 0.00 4.02
1576 1606 5.865552 CACTTTTGCTGCTTGCTGTATTTAT 59.134 36.000 0.00 0.00 43.37 1.40
1592 1622 6.484288 TGTATTTATTGATAGGGATGCCTGG 58.516 40.000 17.38 0.00 0.00 4.45
1601 1631 0.181350 GGGATGCCTGGAAATCGTCT 59.819 55.000 0.00 0.00 0.00 4.18
1625 1655 4.023450 TGACTTAGTACCAACTGACTGTCG 60.023 45.833 2.98 0.99 36.36 4.35
1636 1666 6.157211 CCAACTGACTGTCGATACTTTACTT 58.843 40.000 2.98 0.00 0.00 2.24
1637 1667 6.089551 CCAACTGACTGTCGATACTTTACTTG 59.910 42.308 2.98 0.00 0.00 3.16
1638 1668 6.570672 ACTGACTGTCGATACTTTACTTGA 57.429 37.500 2.98 0.00 0.00 3.02
1639 1669 6.380190 ACTGACTGTCGATACTTTACTTGAC 58.620 40.000 2.98 0.00 0.00 3.18
1640 1670 6.016527 ACTGACTGTCGATACTTTACTTGACA 60.017 38.462 2.98 0.00 35.14 3.58
1646 1676 6.147581 GTCGATACTTTACTTGACAGTGACA 58.852 40.000 0.00 0.00 34.06 3.58
1705 1737 4.530553 TGCTTGAAAGTGTCACTCCCTATA 59.469 41.667 5.82 0.00 35.39 1.31
1761 1793 1.616725 GGGATGTTCAGGTTGATGCCA 60.617 52.381 0.00 0.00 0.00 4.92
1906 1939 8.015185 ACTACTGTCACTACTTTACTTGGAAA 57.985 34.615 0.00 0.00 0.00 3.13
2008 2042 8.943909 AACATATAGTAGAACCACTAAAGCAC 57.056 34.615 0.00 0.00 34.77 4.40
2043 2077 3.266772 TGGCCACTCTAAATGATGTTCCT 59.733 43.478 0.00 0.00 0.00 3.36
2044 2078 3.879892 GGCCACTCTAAATGATGTTCCTC 59.120 47.826 0.00 0.00 0.00 3.71
2048 2083 6.459298 GCCACTCTAAATGATGTTCCTCAATG 60.459 42.308 0.00 0.00 0.00 2.82
2066 2101 6.293845 CCTCAATGAAATGCCATTAGCTCTAC 60.294 42.308 0.00 0.00 44.23 2.59
2107 2158 3.672511 GCTTCTTCATGTGCCAATCTGTG 60.673 47.826 0.00 0.00 0.00 3.66
2108 2159 3.421919 TCTTCATGTGCCAATCTGTGA 57.578 42.857 0.00 0.00 0.00 3.58
2117 2168 3.434984 GTGCCAATCTGTGAGAGAGTTTC 59.565 47.826 0.00 0.00 32.80 2.78
2127 2178 6.592994 TCTGTGAGAGAGTTTCAATGCTAATG 59.407 38.462 0.00 0.00 0.00 1.90
2129 2180 5.877012 GTGAGAGAGTTTCAATGCTAATGGA 59.123 40.000 0.00 0.00 0.00 3.41
2133 2184 9.282569 GAGAGAGTTTCAATGCTAATGGATATT 57.717 33.333 0.00 0.00 0.00 1.28
2139 2190 9.185192 GTTTCAATGCTAATGGATATTTAGTGC 57.815 33.333 0.00 0.00 0.00 4.40
2157 2208 0.875059 GCTGCAGTTTAGGGTGTGTC 59.125 55.000 16.64 0.00 0.00 3.67
2172 2223 4.284178 GGTGTGTCTGTATCCCTAGGTTA 58.716 47.826 8.29 0.00 0.00 2.85
2202 2253 6.239345 GCTTAGCTAGGCTAGATAAAACTGGA 60.239 42.308 26.80 8.81 42.34 3.86
2211 2262 6.239714 GGCTAGATAAAACTGGATCATCTGGA 60.240 42.308 0.00 0.00 0.00 3.86
2234 2285 1.373371 GCCAAGAAAAGCAAGGCCG 60.373 57.895 0.00 0.00 39.42 6.13
2235 2286 2.041153 CCAAGAAAAGCAAGGCCGT 58.959 52.632 0.00 0.00 0.00 5.68
2246 2297 0.655208 CAAGGCCGTTTTGTTTTGGC 59.345 50.000 0.00 0.00 46.82 4.52
2251 2302 2.390938 GCCGTTTTGTTTTGGCTAGTC 58.609 47.619 0.00 0.00 44.16 2.59
2271 2322 0.465460 ACTGGCAAACCACGATGTGT 60.465 50.000 0.00 0.00 42.67 3.72
2346 2402 2.854777 CCAATTCAGCTAGTCTTCGACG 59.145 50.000 0.00 0.00 37.67 5.12
2347 2403 2.853731 ATTCAGCTAGTCTTCGACGG 57.146 50.000 0.00 0.00 37.67 4.79
2355 2411 4.277672 AGCTAGTCTTCGACGGCAAATATA 59.722 41.667 13.83 0.00 38.09 0.86
2431 2487 0.324645 AAATAGCCACCCTTGCCCAG 60.325 55.000 0.00 0.00 0.00 4.45
2474 2531 3.557264 CCTCAGAACCAAACTCACCCTAC 60.557 52.174 0.00 0.00 0.00 3.18
2506 2563 5.466058 GGTGATTGAAAATGCACAAATCACA 59.534 36.000 26.24 9.97 36.91 3.58
2543 2600 9.173939 GCTATGATTTGCATCACAGTTATAAAC 57.826 33.333 0.00 0.00 42.46 2.01
2644 2701 7.944729 AAATTCTGCATGTTCAAGTATAGGT 57.055 32.000 0.00 0.00 0.00 3.08
2711 2768 5.361857 ACGTATGGTTGTATTGTAGCTACCT 59.638 40.000 21.01 10.91 32.96 3.08
3032 3098 0.595095 CTCCTTGCAGCCACACTTTC 59.405 55.000 0.00 0.00 0.00 2.62
3223 3289 1.266718 TCACTGCTTTGATGTTTCCGC 59.733 47.619 0.00 0.00 0.00 5.54
3239 3305 0.734889 CCGCATGATCTTCCACAACC 59.265 55.000 0.00 0.00 0.00 3.77
3246 3312 4.640771 TGATCTTCCACAACCTTAGCTT 57.359 40.909 0.00 0.00 0.00 3.74
3490 3558 4.333690 GAGAGGACCTGTACTCAACTGTA 58.666 47.826 11.94 0.00 43.06 2.74
3911 3980 9.653287 CAGACATGTAAGAGTTAAATGTTCCTA 57.347 33.333 0.00 0.00 42.63 2.94
3929 3998 3.843619 TCCTACCACACAATGAGGATTCA 59.156 43.478 0.00 0.00 37.81 2.57
4009 4078 4.020039 TGAATGTAATCCCGTGGTTGTAGT 60.020 41.667 0.00 0.00 0.00 2.73
4010 4079 3.598019 TGTAATCCCGTGGTTGTAGTC 57.402 47.619 0.00 0.00 0.00 2.59
4013 4082 3.782656 AATCCCGTGGTTGTAGTCTTT 57.217 42.857 0.00 0.00 0.00 2.52
4014 4083 4.895668 AATCCCGTGGTTGTAGTCTTTA 57.104 40.909 0.00 0.00 0.00 1.85
4016 4085 4.261578 TCCCGTGGTTGTAGTCTTTAAG 57.738 45.455 0.00 0.00 0.00 1.85
4017 4086 3.642848 TCCCGTGGTTGTAGTCTTTAAGT 59.357 43.478 0.00 0.00 0.00 2.24
4531 4607 7.739022 TTTCATGAACGCAAATTGTCATATC 57.261 32.000 7.89 0.00 0.00 1.63
4534 4610 5.878332 TGAACGCAAATTGTCATATCTGT 57.122 34.783 0.00 0.00 0.00 3.41
4535 4611 5.630061 TGAACGCAAATTGTCATATCTGTG 58.370 37.500 0.00 0.00 0.00 3.66
4774 4850 5.125097 AGCCACTGAAGATGCTTTGAATAAG 59.875 40.000 0.00 0.00 0.00 1.73
4879 4955 0.324943 CCGGGAACACCTCACAGAAT 59.675 55.000 0.00 0.00 36.97 2.40
5021 5097 5.753438 TCATATTAAGTTCAGCTAAGCACGG 59.247 40.000 0.00 0.00 0.00 4.94
5057 5133 6.736110 ACAACCTGTTAACAGTAGGAAGTA 57.264 37.500 29.05 0.00 42.27 2.24
5085 5161 1.822990 CTTGAGGCCATGCTTCATGTT 59.177 47.619 5.01 0.00 43.72 2.71
5376 5452 8.353423 AGGCAAGTTTGAATACATTAACATCT 57.647 30.769 0.00 0.00 0.00 2.90
5644 5720 1.795286 GCGTGATTAGCAGGATAGCAC 59.205 52.381 0.00 0.00 36.85 4.40
5759 5998 6.471146 CAGCTTTATGGCTAGGTCATATCTT 58.529 40.000 0.00 0.00 41.00 2.40
5862 6101 2.041701 AGCATTTTGGGAGCAACAACT 58.958 42.857 0.00 0.00 0.00 3.16
6007 6246 3.328050 AGAATAGCCTATGCAGGTTACCC 59.672 47.826 0.00 0.00 44.68 3.69
6102 6341 4.602107 TGCCTGATTGATCTTTCCATTGA 58.398 39.130 0.00 0.00 0.00 2.57
6404 6644 1.389609 GGTGCAGCCATGGGATTCTG 61.390 60.000 15.13 13.03 37.17 3.02
6857 7097 4.999950 ACACGAAGAAATCTTGCTGAGAAT 59.000 37.500 0.00 0.00 38.06 2.40
6930 7170 0.251916 TGATTTCCTGCGGTGGTAGG 59.748 55.000 0.00 0.00 46.49 3.18
6990 7392 7.564793 AGGTATACTTTGTATCATTGCTGTCA 58.435 34.615 2.25 0.00 0.00 3.58
7010 7412 4.449743 GTCATTGTTCGGCTACAGTTTGTA 59.550 41.667 0.00 0.00 0.00 2.41
7011 7413 4.449743 TCATTGTTCGGCTACAGTTTGTAC 59.550 41.667 0.00 0.00 0.00 2.90
7012 7414 3.738830 TGTTCGGCTACAGTTTGTACT 57.261 42.857 0.00 0.00 34.00 2.73
7013 7415 4.062677 TGTTCGGCTACAGTTTGTACTT 57.937 40.909 0.00 0.00 30.26 2.24
7014 7416 4.444536 TGTTCGGCTACAGTTTGTACTTT 58.555 39.130 0.00 0.00 30.26 2.66
7015 7417 4.271533 TGTTCGGCTACAGTTTGTACTTTG 59.728 41.667 0.00 0.00 30.26 2.77
7016 7418 4.062677 TCGGCTACAGTTTGTACTTTGT 57.937 40.909 0.00 0.00 30.26 2.83
7086 7488 3.013648 TGTTCCTGGTAATCCTACTCCCT 59.986 47.826 0.00 0.00 34.23 4.20
7277 7680 2.485814 GGAATTCAGTGACAGCAACTCC 59.514 50.000 7.93 0.00 0.00 3.85
7302 7705 4.025229 GCATTTGTGAAGTCAGTGACGTTA 60.025 41.667 17.40 8.59 37.67 3.18
7355 7758 6.332976 ACCTTGAATTGATGTATTCCCTCT 57.667 37.500 0.00 0.00 34.34 3.69
7367 7770 9.832445 TGATGTATTCCCTCTGTTTCTAAATAC 57.168 33.333 0.00 0.00 0.00 1.89
7450 7853 5.046014 AGTGTAGATTCACTGATTTGGCTCT 60.046 40.000 0.00 0.00 45.40 4.09
7454 7857 5.999044 AGATTCACTGATTTGGCTCTGTAT 58.001 37.500 0.00 0.00 0.00 2.29
7459 7862 5.422012 TCACTGATTTGGCTCTGTATGTAGA 59.578 40.000 0.00 0.00 0.00 2.59
7460 7863 6.070824 TCACTGATTTGGCTCTGTATGTAGAA 60.071 38.462 0.00 0.00 0.00 2.10
7461 7864 6.257411 CACTGATTTGGCTCTGTATGTAGAAG 59.743 42.308 0.00 0.00 0.00 2.85
7462 7865 6.070538 ACTGATTTGGCTCTGTATGTAGAAGT 60.071 38.462 0.00 0.00 0.00 3.01
7463 7866 6.341316 TGATTTGGCTCTGTATGTAGAAGTC 58.659 40.000 0.00 0.00 0.00 3.01
7464 7867 6.155221 TGATTTGGCTCTGTATGTAGAAGTCT 59.845 38.462 0.00 0.00 0.00 3.24
7536 7939 8.906867 AGCATAATTGTGTCAATACTTAGCATT 58.093 29.630 4.00 0.00 0.00 3.56
7949 8352 5.803967 GTGCTTTCATCCATCAACTTCATTC 59.196 40.000 0.00 0.00 0.00 2.67
8071 8474 0.535335 GTGCCTGGATCAACCTCGTA 59.465 55.000 0.00 0.00 39.86 3.43
8181 8584 7.102993 GCTTTATTTTTATTCTTTGGAGGCCA 58.897 34.615 5.01 0.00 0.00 5.36
8189 8592 0.251742 CTTTGGAGGCCATTGGGTCA 60.252 55.000 5.01 0.00 43.06 4.02
8262 8665 8.984764 TGTAATTGTTATATGTACGCATCCTTC 58.015 33.333 0.00 0.00 36.58 3.46
8345 8748 8.820628 ATCATACGTTAAATGTCGATTTGTTG 57.179 30.769 0.00 0.00 33.63 3.33
8348 8751 3.240899 CGTTAAATGTCGATTTGTTGCGC 60.241 43.478 0.00 0.00 33.63 6.09
8389 8792 3.358118 TGCATGCTGATTTGGAGATTCA 58.642 40.909 20.33 0.00 0.00 2.57
8456 8859 6.313905 GTGTGTCCGACTCATGAAGATAAAAT 59.686 38.462 6.57 0.00 0.00 1.82
8780 9188 5.301298 GCATCTTGATAAGGGCATTTTCTCT 59.699 40.000 4.14 0.00 32.10 3.10
8808 9216 3.802866 TCGGCATATAAAGCACATGTGA 58.197 40.909 29.80 8.82 0.00 3.58
8960 9369 2.285083 GCGCACAATAGTCACCCAATA 58.715 47.619 0.30 0.00 0.00 1.90
9019 9428 3.898509 GTGTGCTGTTTGCGGCCA 61.899 61.111 2.24 0.00 46.11 5.36
9041 9450 0.036388 TGTTCGAAGATGGAGGGCAC 60.036 55.000 0.00 0.00 35.04 5.01
9063 9472 6.204495 GCACCTTTTTCTAAAATGCAAATGGA 59.796 34.615 0.00 0.00 36.31 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.094957 ACAAACATCGCCGGTATTTTGG 60.095 45.455 1.90 0.00 0.00 3.28
11 12 3.210358 ACAAACATCGCCGGTATTTTG 57.790 42.857 1.90 8.74 0.00 2.44
12 13 3.926821 AACAAACATCGCCGGTATTTT 57.073 38.095 1.90 0.00 0.00 1.82
13 14 3.926821 AAACAAACATCGCCGGTATTT 57.073 38.095 1.90 0.00 0.00 1.40
14 15 3.570559 CAAAACAAACATCGCCGGTATT 58.429 40.909 1.90 0.00 0.00 1.89
15 16 2.094957 CCAAAACAAACATCGCCGGTAT 60.095 45.455 1.90 0.00 0.00 2.73
16 17 1.267261 CCAAAACAAACATCGCCGGTA 59.733 47.619 1.90 0.00 0.00 4.02
17 18 0.031449 CCAAAACAAACATCGCCGGT 59.969 50.000 1.90 0.00 0.00 5.28
18 19 0.312416 TCCAAAACAAACATCGCCGG 59.688 50.000 0.00 0.00 0.00 6.13
19 20 1.685302 CTCCAAAACAAACATCGCCG 58.315 50.000 0.00 0.00 0.00 6.46
20 21 1.000274 AGCTCCAAAACAAACATCGCC 60.000 47.619 0.00 0.00 0.00 5.54
21 22 2.053627 CAGCTCCAAAACAAACATCGC 58.946 47.619 0.00 0.00 0.00 4.58
22 23 3.300009 GTCAGCTCCAAAACAAACATCG 58.700 45.455 0.00 0.00 0.00 3.84
23 24 3.300009 CGTCAGCTCCAAAACAAACATC 58.700 45.455 0.00 0.00 0.00 3.06
24 25 2.543653 GCGTCAGCTCCAAAACAAACAT 60.544 45.455 0.00 0.00 41.01 2.71
25 26 1.202245 GCGTCAGCTCCAAAACAAACA 60.202 47.619 0.00 0.00 41.01 2.83
26 27 1.477105 GCGTCAGCTCCAAAACAAAC 58.523 50.000 0.00 0.00 41.01 2.93
27 28 0.383949 GGCGTCAGCTCCAAAACAAA 59.616 50.000 0.00 0.00 44.37 2.83
28 29 0.749818 TGGCGTCAGCTCCAAAACAA 60.750 50.000 0.00 0.00 44.37 2.83
29 30 1.153066 TGGCGTCAGCTCCAAAACA 60.153 52.632 0.00 0.00 44.37 2.83
30 31 1.166531 AGTGGCGTCAGCTCCAAAAC 61.167 55.000 0.00 0.00 44.37 2.43
31 32 0.394938 TAGTGGCGTCAGCTCCAAAA 59.605 50.000 0.00 0.00 44.37 2.44
32 33 0.394938 TTAGTGGCGTCAGCTCCAAA 59.605 50.000 0.00 0.00 44.37 3.28
33 34 0.037326 CTTAGTGGCGTCAGCTCCAA 60.037 55.000 0.00 0.00 44.37 3.53
34 35 1.185618 ACTTAGTGGCGTCAGCTCCA 61.186 55.000 0.00 0.00 44.37 3.86
35 36 0.815734 TACTTAGTGGCGTCAGCTCC 59.184 55.000 0.00 0.00 44.37 4.70
36 37 2.094649 AGTTACTTAGTGGCGTCAGCTC 60.095 50.000 0.00 0.00 44.37 4.09
37 38 1.893801 AGTTACTTAGTGGCGTCAGCT 59.106 47.619 0.00 0.00 44.37 4.24
38 39 2.365408 AGTTACTTAGTGGCGTCAGC 57.635 50.000 0.00 0.00 44.18 4.26
39 40 4.164294 GTGTAGTTACTTAGTGGCGTCAG 58.836 47.826 0.00 0.00 0.00 3.51
40 41 3.057315 GGTGTAGTTACTTAGTGGCGTCA 60.057 47.826 0.00 0.00 0.00 4.35
41 42 3.192212 AGGTGTAGTTACTTAGTGGCGTC 59.808 47.826 0.00 0.00 0.00 5.19
42 43 3.160269 AGGTGTAGTTACTTAGTGGCGT 58.840 45.455 0.00 0.00 0.00 5.68
43 44 3.863142 AGGTGTAGTTACTTAGTGGCG 57.137 47.619 0.00 0.00 0.00 5.69
44 45 7.432059 CCTTATAGGTGTAGTTACTTAGTGGC 58.568 42.308 0.00 0.00 0.00 5.01
45 46 7.562821 ACCCTTATAGGTGTAGTTACTTAGTGG 59.437 40.741 0.00 0.00 39.24 4.00
46 47 8.530804 ACCCTTATAGGTGTAGTTACTTAGTG 57.469 38.462 0.00 0.00 39.24 2.74
47 48 9.552695 AAACCCTTATAGGTGTAGTTACTTAGT 57.447 33.333 0.00 0.00 40.05 2.24
50 51 8.324306 GGAAAACCCTTATAGGTGTAGTTACTT 58.676 37.037 0.00 0.00 40.05 2.24
51 52 7.681598 AGGAAAACCCTTATAGGTGTAGTTACT 59.318 37.037 0.00 0.00 44.85 2.24
52 53 7.855375 AGGAAAACCCTTATAGGTGTAGTTAC 58.145 38.462 0.00 0.00 44.85 2.50
53 54 8.981659 GTAGGAAAACCCTTATAGGTGTAGTTA 58.018 37.037 0.00 0.00 44.85 2.24
54 55 6.964876 AGGAAAACCCTTATAGGTGTAGTT 57.035 37.500 0.00 0.00 44.85 2.24
55 56 7.194761 AGTAGGAAAACCCTTATAGGTGTAGT 58.805 38.462 0.00 0.00 44.85 2.73
56 57 7.672122 AGTAGGAAAACCCTTATAGGTGTAG 57.328 40.000 0.00 0.00 44.85 2.74
57 58 7.288621 GCTAGTAGGAAAACCCTTATAGGTGTA 59.711 40.741 0.00 0.00 44.85 2.90
58 59 6.099413 GCTAGTAGGAAAACCCTTATAGGTGT 59.901 42.308 0.00 0.00 44.85 4.16
59 60 6.522946 GCTAGTAGGAAAACCCTTATAGGTG 58.477 44.000 0.00 0.00 44.85 4.00
60 61 5.303845 CGCTAGTAGGAAAACCCTTATAGGT 59.696 44.000 0.00 0.00 44.85 3.08
61 62 5.279356 CCGCTAGTAGGAAAACCCTTATAGG 60.279 48.000 0.00 0.00 44.85 2.57
62 63 5.279356 CCCGCTAGTAGGAAAACCCTTATAG 60.279 48.000 7.80 0.00 44.85 1.31
63 64 4.590222 CCCGCTAGTAGGAAAACCCTTATA 59.410 45.833 7.80 0.00 44.85 0.98
64 65 3.390311 CCCGCTAGTAGGAAAACCCTTAT 59.610 47.826 7.80 0.00 44.85 1.73
65 66 2.767960 CCCGCTAGTAGGAAAACCCTTA 59.232 50.000 7.80 0.00 44.85 2.69
66 67 1.558294 CCCGCTAGTAGGAAAACCCTT 59.442 52.381 7.80 0.00 44.85 3.95
68 69 0.179702 CCCCGCTAGTAGGAAAACCC 59.820 60.000 7.80 0.00 0.00 4.11
69 70 0.179702 CCCCCGCTAGTAGGAAAACC 59.820 60.000 7.80 0.00 0.00 3.27
70 71 3.774616 CCCCCGCTAGTAGGAAAAC 57.225 57.895 7.80 0.00 0.00 2.43
85 86 3.623703 GAACTCCACCTTCGCCCCC 62.624 68.421 0.00 0.00 0.00 5.40
86 87 2.046217 GAACTCCACCTTCGCCCC 60.046 66.667 0.00 0.00 0.00 5.80
87 88 2.046217 GGAACTCCACCTTCGCCC 60.046 66.667 0.00 0.00 35.64 6.13
88 89 2.747686 TGGAACTCCACCTTCGCC 59.252 61.111 0.00 0.00 42.01 5.54
96 97 0.617820 GCCTCCTAGGTGGAACTCCA 60.618 60.000 30.17 0.00 45.79 3.86
97 98 1.677637 CGCCTCCTAGGTGGAACTCC 61.678 65.000 30.17 13.01 45.63 3.85
98 99 1.817209 CGCCTCCTAGGTGGAACTC 59.183 63.158 30.17 13.35 45.63 3.01
99 100 4.035843 CGCCTCCTAGGTGGAACT 57.964 61.111 30.17 0.00 45.63 3.01
104 105 3.541713 GCCTCCGCCTCCTAGGTG 61.542 72.222 9.08 6.22 45.32 4.00
124 125 4.749310 CTTGCTCCGCGTCCAGCT 62.749 66.667 19.06 0.00 45.59 4.24
129 130 4.077188 GTGTGCTTGCTCCGCGTC 62.077 66.667 4.92 0.00 0.00 5.19
130 131 4.609018 AGTGTGCTTGCTCCGCGT 62.609 61.111 4.92 0.00 0.00 6.01
131 132 3.782244 GAGTGTGCTTGCTCCGCG 61.782 66.667 0.00 0.00 0.00 6.46
132 133 2.358003 AGAGTGTGCTTGCTCCGC 60.358 61.111 0.00 0.00 32.47 5.54
133 134 0.390866 ATGAGAGTGTGCTTGCTCCG 60.391 55.000 0.00 0.00 32.47 4.63
134 135 1.338484 TGATGAGAGTGTGCTTGCTCC 60.338 52.381 0.00 0.00 32.47 4.70
135 136 2.090400 TGATGAGAGTGTGCTTGCTC 57.910 50.000 0.00 0.00 0.00 4.26
136 137 2.747989 CAATGATGAGAGTGTGCTTGCT 59.252 45.455 0.00 0.00 0.00 3.91
137 138 2.745821 TCAATGATGAGAGTGTGCTTGC 59.254 45.455 0.00 0.00 0.00 4.01
138 139 4.035324 GGATCAATGATGAGAGTGTGCTTG 59.965 45.833 0.00 0.00 39.39 4.01
139 140 4.197750 GGATCAATGATGAGAGTGTGCTT 58.802 43.478 0.00 0.00 39.39 3.91
140 141 3.433314 GGGATCAATGATGAGAGTGTGCT 60.433 47.826 0.00 0.00 39.39 4.40
141 142 2.877168 GGGATCAATGATGAGAGTGTGC 59.123 50.000 0.00 0.00 39.39 4.57
142 143 3.129109 CGGGATCAATGATGAGAGTGTG 58.871 50.000 0.00 0.00 39.39 3.82
143 144 2.103771 CCGGGATCAATGATGAGAGTGT 59.896 50.000 0.00 0.00 39.39 3.55
144 145 2.763933 CCGGGATCAATGATGAGAGTG 58.236 52.381 0.00 0.00 39.39 3.51
145 146 1.071385 GCCGGGATCAATGATGAGAGT 59.929 52.381 2.18 0.00 39.39 3.24
146 147 1.610102 GGCCGGGATCAATGATGAGAG 60.610 57.143 2.18 0.00 39.39 3.20
147 148 0.397941 GGCCGGGATCAATGATGAGA 59.602 55.000 2.18 0.00 39.39 3.27
148 149 0.399454 AGGCCGGGATCAATGATGAG 59.601 55.000 2.18 0.00 39.39 2.90
149 150 0.397941 GAGGCCGGGATCAATGATGA 59.602 55.000 2.18 0.00 40.57 2.92
150 151 0.109153 TGAGGCCGGGATCAATGATG 59.891 55.000 2.18 0.00 0.00 3.07
151 152 1.070604 ATGAGGCCGGGATCAATGAT 58.929 50.000 2.18 0.00 0.00 2.45
152 153 0.109153 CATGAGGCCGGGATCAATGA 59.891 55.000 2.18 0.00 0.00 2.57
153 154 0.109153 TCATGAGGCCGGGATCAATG 59.891 55.000 2.18 2.66 0.00 2.82
154 155 1.004044 GATCATGAGGCCGGGATCAAT 59.996 52.381 18.13 1.62 36.89 2.57
155 156 0.397941 GATCATGAGGCCGGGATCAA 59.602 55.000 18.13 0.00 36.89 2.57
156 157 0.763986 TGATCATGAGGCCGGGATCA 60.764 55.000 20.42 20.42 42.66 2.92
157 158 0.397941 TTGATCATGAGGCCGGGATC 59.602 55.000 16.92 16.92 37.31 3.36
158 159 0.846015 TTTGATCATGAGGCCGGGAT 59.154 50.000 2.18 0.00 0.00 3.85
159 160 0.623194 TTTTGATCATGAGGCCGGGA 59.377 50.000 2.18 0.00 0.00 5.14
160 161 1.134946 GTTTTTGATCATGAGGCCGGG 59.865 52.381 2.18 0.00 0.00 5.73
161 162 1.134946 GGTTTTTGATCATGAGGCCGG 59.865 52.381 0.09 0.00 0.00 6.13
162 163 1.818060 TGGTTTTTGATCATGAGGCCG 59.182 47.619 0.09 0.00 0.00 6.13
163 164 2.417787 GCTGGTTTTTGATCATGAGGCC 60.418 50.000 0.09 0.00 0.00 5.19
164 165 2.417787 GGCTGGTTTTTGATCATGAGGC 60.418 50.000 0.09 0.00 0.00 4.70
165 166 3.094572 AGGCTGGTTTTTGATCATGAGG 58.905 45.455 0.09 0.00 0.00 3.86
166 167 4.381292 GGAAGGCTGGTTTTTGATCATGAG 60.381 45.833 0.09 0.00 0.00 2.90
167 168 3.511146 GGAAGGCTGGTTTTTGATCATGA 59.489 43.478 0.00 0.00 0.00 3.07
168 169 3.512724 AGGAAGGCTGGTTTTTGATCATG 59.487 43.478 0.00 0.00 0.00 3.07
169 170 3.782992 AGGAAGGCTGGTTTTTGATCAT 58.217 40.909 0.00 0.00 0.00 2.45
170 171 3.243359 AGGAAGGCTGGTTTTTGATCA 57.757 42.857 0.00 0.00 0.00 2.92
171 172 3.573967 TCAAGGAAGGCTGGTTTTTGATC 59.426 43.478 0.00 0.00 0.00 2.92
172 173 3.321968 GTCAAGGAAGGCTGGTTTTTGAT 59.678 43.478 0.00 0.00 0.00 2.57
173 174 2.693074 GTCAAGGAAGGCTGGTTTTTGA 59.307 45.455 0.00 0.00 0.00 2.69
174 175 2.695147 AGTCAAGGAAGGCTGGTTTTTG 59.305 45.455 0.00 0.00 0.00 2.44
175 176 2.959030 GAGTCAAGGAAGGCTGGTTTTT 59.041 45.455 0.00 0.00 0.00 1.94
176 177 2.091885 TGAGTCAAGGAAGGCTGGTTTT 60.092 45.455 0.00 0.00 0.00 2.43
177 178 1.494721 TGAGTCAAGGAAGGCTGGTTT 59.505 47.619 0.00 0.00 0.00 3.27
178 179 1.140312 TGAGTCAAGGAAGGCTGGTT 58.860 50.000 0.00 0.00 0.00 3.67
179 180 0.398318 GTGAGTCAAGGAAGGCTGGT 59.602 55.000 0.00 0.00 0.00 4.00
180 181 0.689623 AGTGAGTCAAGGAAGGCTGG 59.310 55.000 0.00 0.00 0.00 4.85
181 182 2.557920 AAGTGAGTCAAGGAAGGCTG 57.442 50.000 0.00 0.00 0.00 4.85
182 183 3.904339 TCTAAAGTGAGTCAAGGAAGGCT 59.096 43.478 0.00 0.00 0.00 4.58
183 184 3.997681 GTCTAAAGTGAGTCAAGGAAGGC 59.002 47.826 0.00 0.00 0.00 4.35
184 185 4.570930 GGTCTAAAGTGAGTCAAGGAAGG 58.429 47.826 0.00 0.00 0.00 3.46
185 186 4.022242 TCGGTCTAAAGTGAGTCAAGGAAG 60.022 45.833 0.00 0.00 0.00 3.46
186 187 3.893200 TCGGTCTAAAGTGAGTCAAGGAA 59.107 43.478 0.00 0.00 0.00 3.36
187 188 3.493334 TCGGTCTAAAGTGAGTCAAGGA 58.507 45.455 0.00 0.00 0.00 3.36
188 189 3.936372 TCGGTCTAAAGTGAGTCAAGG 57.064 47.619 0.00 0.00 0.00 3.61
189 190 5.470368 TCATTCGGTCTAAAGTGAGTCAAG 58.530 41.667 0.00 0.00 0.00 3.02
190 191 5.243060 TCTCATTCGGTCTAAAGTGAGTCAA 59.757 40.000 0.00 0.00 35.70 3.18
191 192 4.765339 TCTCATTCGGTCTAAAGTGAGTCA 59.235 41.667 0.00 0.00 35.70 3.41
192 193 5.312120 TCTCATTCGGTCTAAAGTGAGTC 57.688 43.478 0.00 0.00 35.70 3.36
193 194 4.158764 CCTCTCATTCGGTCTAAAGTGAGT 59.841 45.833 0.00 0.00 35.70 3.41
194 195 4.158764 ACCTCTCATTCGGTCTAAAGTGAG 59.841 45.833 0.00 0.00 35.58 3.51
195 196 4.087182 ACCTCTCATTCGGTCTAAAGTGA 58.913 43.478 0.00 0.00 0.00 3.41
196 197 4.457834 ACCTCTCATTCGGTCTAAAGTG 57.542 45.455 0.00 0.00 0.00 3.16
197 198 6.351117 CCTTAACCTCTCATTCGGTCTAAAGT 60.351 42.308 0.00 0.00 31.87 2.66
198 199 6.043411 CCTTAACCTCTCATTCGGTCTAAAG 58.957 44.000 0.00 0.00 31.87 1.85
199 200 5.626116 GCCTTAACCTCTCATTCGGTCTAAA 60.626 44.000 0.00 0.00 31.87 1.85
200 201 4.142004 GCCTTAACCTCTCATTCGGTCTAA 60.142 45.833 0.00 0.00 31.87 2.10
201 202 3.383825 GCCTTAACCTCTCATTCGGTCTA 59.616 47.826 0.00 0.00 31.87 2.59
202 203 2.168728 GCCTTAACCTCTCATTCGGTCT 59.831 50.000 0.00 0.00 31.87 3.85
203 204 2.552031 GCCTTAACCTCTCATTCGGTC 58.448 52.381 0.00 0.00 31.87 4.79
204 205 1.134788 CGCCTTAACCTCTCATTCGGT 60.135 52.381 0.00 0.00 34.27 4.69
205 206 1.136305 TCGCCTTAACCTCTCATTCGG 59.864 52.381 0.00 0.00 0.00 4.30
206 207 2.579207 TCGCCTTAACCTCTCATTCG 57.421 50.000 0.00 0.00 0.00 3.34
207 208 2.937149 GGTTCGCCTTAACCTCTCATTC 59.063 50.000 0.00 0.00 44.67 2.67
208 209 2.677037 CGGTTCGCCTTAACCTCTCATT 60.677 50.000 8.23 0.00 45.69 2.57
209 210 1.134788 CGGTTCGCCTTAACCTCTCAT 60.135 52.381 8.23 0.00 45.69 2.90
210 211 0.245539 CGGTTCGCCTTAACCTCTCA 59.754 55.000 8.23 0.00 45.69 3.27
211 212 0.245813 ACGGTTCGCCTTAACCTCTC 59.754 55.000 8.23 0.00 45.69 3.20
212 213 0.245813 GACGGTTCGCCTTAACCTCT 59.754 55.000 8.23 0.00 45.69 3.69
213 214 1.074872 CGACGGTTCGCCTTAACCTC 61.075 60.000 8.23 4.96 45.69 3.85
214 215 1.080298 CGACGGTTCGCCTTAACCT 60.080 57.895 8.23 0.00 45.69 3.50
215 216 3.466879 CGACGGTTCGCCTTAACC 58.533 61.111 0.00 0.00 44.63 2.85
224 225 0.458025 GGTGGATGAGACGACGGTTC 60.458 60.000 0.00 0.00 0.00 3.62
225 226 0.898789 AGGTGGATGAGACGACGGTT 60.899 55.000 0.00 0.00 0.00 4.44
226 227 1.304217 AGGTGGATGAGACGACGGT 60.304 57.895 0.00 0.00 0.00 4.83
227 228 1.433879 GAGGTGGATGAGACGACGG 59.566 63.158 0.00 0.00 0.00 4.79
228 229 1.433879 GGAGGTGGATGAGACGACG 59.566 63.158 0.00 0.00 0.00 5.12
229 230 1.433879 CGGAGGTGGATGAGACGAC 59.566 63.158 0.00 0.00 0.00 4.34
230 231 2.415608 GCGGAGGTGGATGAGACGA 61.416 63.158 0.00 0.00 0.00 4.20
231 232 2.105128 GCGGAGGTGGATGAGACG 59.895 66.667 0.00 0.00 0.00 4.18
232 233 2.105128 CGCGGAGGTGGATGAGAC 59.895 66.667 0.00 0.00 0.00 3.36
233 234 2.044352 TCGCGGAGGTGGATGAGA 60.044 61.111 6.13 0.00 0.00 3.27
234 235 2.021068 ATGTCGCGGAGGTGGATGAG 62.021 60.000 6.13 0.00 0.00 2.90
235 236 2.058001 ATGTCGCGGAGGTGGATGA 61.058 57.895 6.13 0.00 0.00 2.92
236 237 1.884464 CATGTCGCGGAGGTGGATG 60.884 63.158 6.13 0.00 0.00 3.51
237 238 2.021068 CTCATGTCGCGGAGGTGGAT 62.021 60.000 6.13 0.00 0.00 3.41
238 239 2.678580 TCATGTCGCGGAGGTGGA 60.679 61.111 6.13 0.00 0.00 4.02
239 240 2.202797 CTCATGTCGCGGAGGTGG 60.203 66.667 6.13 0.00 0.00 4.61
240 241 1.517257 GTCTCATGTCGCGGAGGTG 60.517 63.158 6.13 0.42 0.00 4.00
241 242 1.658686 GAGTCTCATGTCGCGGAGGT 61.659 60.000 6.13 0.00 0.00 3.85
242 243 1.064946 GAGTCTCATGTCGCGGAGG 59.935 63.158 6.13 0.00 0.00 4.30
243 244 1.297967 CGAGTCTCATGTCGCGGAG 60.298 63.158 6.13 4.83 0.00 4.63
244 245 1.303091 TTCGAGTCTCATGTCGCGGA 61.303 55.000 6.13 0.00 36.11 5.54
245 246 0.248661 ATTCGAGTCTCATGTCGCGG 60.249 55.000 6.13 0.00 36.11 6.46
246 247 2.384899 TATTCGAGTCTCATGTCGCG 57.615 50.000 0.00 0.00 36.11 5.87
247 248 4.877270 GAATATTCGAGTCTCATGTCGC 57.123 45.455 0.00 0.00 36.11 5.19
277 278 3.134127 GGCCTCGTGGTCATTGGC 61.134 66.667 2.61 0.00 42.56 4.52
304 305 3.189606 AGATGTTGATGACCCCCTTGTA 58.810 45.455 0.00 0.00 0.00 2.41
309 310 2.224066 CGAGTAGATGTTGATGACCCCC 60.224 54.545 0.00 0.00 0.00 5.40
358 359 5.164041 GCAGATTGAAACGAGAACTACACTC 60.164 44.000 0.00 0.00 0.00 3.51
362 363 3.673809 ACGCAGATTGAAACGAGAACTAC 59.326 43.478 0.00 0.00 0.00 2.73
370 371 3.059188 ACAGGTTTACGCAGATTGAAACG 60.059 43.478 0.00 0.00 33.51 3.60
380 381 4.323417 AGATTTCATCACAGGTTTACGCA 58.677 39.130 0.00 0.00 0.00 5.24
382 383 7.539712 ACATAGATTTCATCACAGGTTTACG 57.460 36.000 0.00 0.00 0.00 3.18
385 386 6.209192 TGCAACATAGATTTCATCACAGGTTT 59.791 34.615 0.00 0.00 0.00 3.27
387 388 5.255687 TGCAACATAGATTTCATCACAGGT 58.744 37.500 0.00 0.00 0.00 4.00
388 389 5.823209 TGCAACATAGATTTCATCACAGG 57.177 39.130 0.00 0.00 0.00 4.00
389 390 6.792326 ACATGCAACATAGATTTCATCACAG 58.208 36.000 0.00 0.00 0.00 3.66
390 391 6.762702 ACATGCAACATAGATTTCATCACA 57.237 33.333 0.00 0.00 0.00 3.58
391 392 7.923888 ACTACATGCAACATAGATTTCATCAC 58.076 34.615 8.72 0.00 0.00 3.06
392 393 8.400186 CAACTACATGCAACATAGATTTCATCA 58.600 33.333 8.72 0.00 0.00 3.07
393 394 7.859377 CCAACTACATGCAACATAGATTTCATC 59.141 37.037 8.72 0.00 0.00 2.92
425 426 3.763897 CCCTTCGTTTTCAATCCCTCAAT 59.236 43.478 0.00 0.00 0.00 2.57
433 434 2.661718 ACCACACCCTTCGTTTTCAAT 58.338 42.857 0.00 0.00 0.00 2.57
435 436 1.746220 CAACCACACCCTTCGTTTTCA 59.254 47.619 0.00 0.00 0.00 2.69
460 461 1.656818 ATGCCCCTCATTTGAACGCG 61.657 55.000 3.53 3.53 29.16 6.01
463 464 2.424956 GTCAGATGCCCCTCATTTGAAC 59.575 50.000 0.61 0.00 44.65 3.18
464 465 2.309755 AGTCAGATGCCCCTCATTTGAA 59.690 45.455 0.61 0.00 44.65 2.69
465 466 1.918262 AGTCAGATGCCCCTCATTTGA 59.082 47.619 0.00 0.00 42.07 2.69
479 480 2.115427 TGTCCACAAACAGGAGTCAGA 58.885 47.619 0.00 0.00 35.42 3.27
481 482 1.472552 CGTGTCCACAAACAGGAGTCA 60.473 52.381 0.00 0.00 37.24 3.41
483 484 0.539986 ACGTGTCCACAAACAGGAGT 59.460 50.000 3.98 0.00 38.18 3.85
504 505 3.965292 ATCCGACTATATATGTCCGCG 57.035 47.619 0.00 0.00 0.00 6.46
549 552 2.269023 AGGGATGTGATGGTGTTCAGA 58.731 47.619 0.00 0.00 0.00 3.27
561 564 4.940046 GTGGAGCATATATGAAGGGATGTG 59.060 45.833 17.10 0.00 0.00 3.21
591 594 8.107095 AGTTGTGCAGTTTCTAATATTTCCCTA 58.893 33.333 0.00 0.00 0.00 3.53
595 598 9.846248 AATGAGTTGTGCAGTTTCTAATATTTC 57.154 29.630 0.00 0.00 0.00 2.17
614 617 2.747446 GCACACACCCGATAAATGAGTT 59.253 45.455 0.00 0.00 0.00 3.01
659 684 5.897050 AGACGGAATAGTGAGAGAATGTTC 58.103 41.667 0.00 0.00 0.00 3.18
684 709 0.793861 GTTCATAGCGCGACCAAACA 59.206 50.000 12.10 0.00 0.00 2.83
720 745 2.807392 GGTCCGGTGTTTCGAAATGTTA 59.193 45.455 14.69 0.00 0.00 2.41
721 746 1.605232 GGTCCGGTGTTTCGAAATGTT 59.395 47.619 14.69 0.00 0.00 2.71
789 814 2.331893 CGGGCAGCAAATGGACGAA 61.332 57.895 0.00 0.00 0.00 3.85
790 815 2.745884 CGGGCAGCAAATGGACGA 60.746 61.111 0.00 0.00 0.00 4.20
921 948 2.058595 CGGTGGGTAGTGGAGGGAG 61.059 68.421 0.00 0.00 0.00 4.30
922 949 2.038329 CGGTGGGTAGTGGAGGGA 59.962 66.667 0.00 0.00 0.00 4.20
923 950 3.782443 GCGGTGGGTAGTGGAGGG 61.782 72.222 0.00 0.00 0.00 4.30
924 951 3.782443 GGCGGTGGGTAGTGGAGG 61.782 72.222 0.00 0.00 0.00 4.30
962 989 3.400599 AAACCCTAGGCGCCCGATG 62.401 63.158 26.15 12.72 0.00 3.84
1576 1606 3.496692 CGATTTCCAGGCATCCCTATCAA 60.497 47.826 0.00 0.00 40.33 2.57
1592 1622 6.867293 AGTTGGTACTAAGTCAAGACGATTTC 59.133 38.462 0.00 0.00 32.22 2.17
1601 1631 5.506815 CGACAGTCAGTTGGTACTAAGTCAA 60.507 44.000 0.41 0.00 31.96 3.18
1625 1655 8.298140 ACTAGTGTCACTGTCAAGTAAAGTATC 58.702 37.037 16.03 0.00 33.79 2.24
1636 1666 7.754851 TGTATTTCTACTAGTGTCACTGTCA 57.245 36.000 16.03 0.00 0.00 3.58
1637 1667 8.459635 TCATGTATTTCTACTAGTGTCACTGTC 58.540 37.037 16.03 0.02 0.00 3.51
1638 1668 8.349568 TCATGTATTTCTACTAGTGTCACTGT 57.650 34.615 16.03 13.17 0.00 3.55
1639 1669 9.639601 TTTCATGTATTTCTACTAGTGTCACTG 57.360 33.333 16.03 8.12 0.00 3.66
1670 1701 3.947834 ACTTTCAAGCAATTCTATCGGGG 59.052 43.478 0.00 0.00 0.00 5.73
1705 1737 4.132122 ACCTTGTTCCCATCAAAATCCT 57.868 40.909 0.00 0.00 0.00 3.24
1738 1770 2.092429 GCATCAACCTGAACATCCCCTA 60.092 50.000 0.00 0.00 0.00 3.53
1785 1817 1.463444 GCGTGAATATAATCCCCGTGC 59.537 52.381 0.00 0.00 0.00 5.34
1906 1939 6.528321 TCAACTCAAGATTCAAGAGTGACAT 58.472 36.000 10.55 0.00 41.45 3.06
2008 2042 3.798202 GAGTGGCCATAAACTCTACCAG 58.202 50.000 9.72 0.00 39.79 4.00
2043 2077 6.359804 AGTAGAGCTAATGGCATTTCATTGA 58.640 36.000 19.21 0.00 44.79 2.57
2044 2078 6.630444 AGTAGAGCTAATGGCATTTCATTG 57.370 37.500 19.21 5.43 44.79 2.82
2048 2083 5.590259 TGGAAAGTAGAGCTAATGGCATTTC 59.410 40.000 19.21 10.08 44.79 2.17
2066 2101 7.446001 AGAAGCTTTAGAAGTTGATGGAAAG 57.554 36.000 0.00 0.00 0.00 2.62
2107 2158 8.845413 ATATCCATTAGCATTGAAACTCTCTC 57.155 34.615 0.00 0.00 0.00 3.20
2108 2159 9.638176 AAATATCCATTAGCATTGAAACTCTCT 57.362 29.630 0.00 0.00 0.00 3.10
2117 2168 6.805271 GCAGCACTAAATATCCATTAGCATTG 59.195 38.462 0.00 0.00 34.42 2.82
2127 2178 5.239525 CCCTAAACTGCAGCACTAAATATCC 59.760 44.000 15.27 0.00 0.00 2.59
2129 2180 5.590259 CACCCTAAACTGCAGCACTAAATAT 59.410 40.000 15.27 0.00 0.00 1.28
2133 2184 2.105821 ACACCCTAAACTGCAGCACTAA 59.894 45.455 15.27 0.00 0.00 2.24
2135 2186 0.474184 ACACCCTAAACTGCAGCACT 59.526 50.000 15.27 0.20 0.00 4.40
2139 2190 2.146342 CAGACACACCCTAAACTGCAG 58.854 52.381 13.48 13.48 0.00 4.41
2157 2208 6.426646 AAGCAAGATAACCTAGGGATACAG 57.573 41.667 14.81 0.00 39.74 2.74
2172 2223 7.546250 TTTATCTAGCCTAGCTAAGCAAGAT 57.454 36.000 16.49 13.30 40.82 2.40
2195 2246 4.445448 GGCTATGTCCAGATGATCCAGTTT 60.445 45.833 0.00 0.00 0.00 2.66
2202 2253 5.378230 TTTCTTGGCTATGTCCAGATGAT 57.622 39.130 0.00 0.00 37.44 2.45
2211 2262 2.232208 GCCTTGCTTTTCTTGGCTATGT 59.768 45.455 0.00 0.00 40.36 2.29
2234 2285 4.359706 CCAGTGACTAGCCAAAACAAAAC 58.640 43.478 0.00 0.00 0.00 2.43
2235 2286 3.181480 GCCAGTGACTAGCCAAAACAAAA 60.181 43.478 0.00 0.00 0.00 2.44
2271 2322 1.212688 CATCAGCCTCCAACCACCATA 59.787 52.381 0.00 0.00 0.00 2.74
2276 2327 0.895100 GTTGCATCAGCCTCCAACCA 60.895 55.000 0.00 0.00 41.13 3.67
2278 2329 0.524862 CTGTTGCATCAGCCTCCAAC 59.475 55.000 11.68 0.00 41.13 3.77
2299 2350 1.985159 ACATGGCCAAGGTAACAGAGA 59.015 47.619 10.96 0.00 41.41 3.10
2355 2411 9.708092 GCTAGATTCCTAGTAACCGAAATAAAT 57.292 33.333 0.00 0.00 43.35 1.40
2431 2487 2.810852 GCTAGCAATCTCCTACCAATGC 59.189 50.000 10.63 0.00 0.00 3.56
2474 2531 6.094464 TGTGCATTTTCAATCACCAGATCTAG 59.906 38.462 0.00 0.00 31.90 2.43
2506 2563 3.950395 GCAAATCATAGCCTGTTCCTTCT 59.050 43.478 0.00 0.00 0.00 2.85
2554 2611 4.634883 CCTTCTGATCTCACAATCAACCAG 59.365 45.833 0.00 0.00 35.32 4.00
2644 2701 5.890985 AGCAATAAGGGTATGTTTGTATGCA 59.109 36.000 0.00 0.00 0.00 3.96
2771 2828 7.348815 TGAAGATACCCACATCTCATGAATTT 58.651 34.615 0.00 0.00 34.08 1.82
2812 2869 8.581578 TCTCACAGTCACACTAATATTACAACA 58.418 33.333 0.00 0.00 0.00 3.33
2813 2870 8.981724 TCTCACAGTCACACTAATATTACAAC 57.018 34.615 0.00 0.00 0.00 3.32
3032 3098 4.740268 ACATTGATGCAGTTGCTTGTATG 58.260 39.130 5.62 7.31 42.66 2.39
3200 3266 3.250762 CGGAAACATCAAAGCAGTGAAGA 59.749 43.478 0.00 0.00 0.00 2.87
3223 3289 4.521146 AGCTAAGGTTGTGGAAGATCATG 58.479 43.478 0.00 0.00 0.00 3.07
3246 3312 9.959749 GGAATTGTTATTTTACTCTTTGTCACA 57.040 29.630 0.00 0.00 0.00 3.58
3692 3760 0.524862 GCCACAGCTTTCACATCTGG 59.475 55.000 0.00 0.00 35.50 3.86
3857 3926 5.392995 TGGAATTGGAAAGAACAGATGGAA 58.607 37.500 0.00 0.00 0.00 3.53
3911 3980 3.072915 TCACTGAATCCTCATTGTGTGGT 59.927 43.478 0.00 0.00 34.63 4.16
3991 4060 3.881937 AGACTACAACCACGGGATTAC 57.118 47.619 0.00 0.00 0.00 1.89
4485 4561 3.436243 AGAGGTGTAGAACTGGAAGGAG 58.564 50.000 0.00 0.00 39.30 3.69
4487 4563 4.625607 AAAGAGGTGTAGAACTGGAAGG 57.374 45.455 0.00 0.00 39.30 3.46
4531 4607 5.765182 AGGTAATGGAAGACAGAAAACACAG 59.235 40.000 0.00 0.00 0.00 3.66
4534 4610 6.187727 AGAGGTAATGGAAGACAGAAAACA 57.812 37.500 0.00 0.00 0.00 2.83
4535 4611 6.937465 AGAAGAGGTAATGGAAGACAGAAAAC 59.063 38.462 0.00 0.00 0.00 2.43
4656 4732 4.899502 TGTTTGGAGAAAGAAGAGCTAGG 58.100 43.478 0.00 0.00 0.00 3.02
4879 4955 1.823470 GTGCCTGCTGTTGGTGACA 60.823 57.895 0.00 0.00 39.83 3.58
5021 5097 2.358898 ACAGGTTGTTTCATGACAGTGC 59.641 45.455 0.00 0.00 0.00 4.40
5057 5133 4.109877 AGCATGGCCTCAAGCTATAAAT 57.890 40.909 3.32 0.00 44.84 1.40
5085 5161 6.116711 TGTCCAAGTAAAGTATAAGCACCA 57.883 37.500 0.00 0.00 0.00 4.17
5376 5452 6.579666 AACTTATACAGACGTTGTACCTCA 57.420 37.500 11.16 0.00 44.68 3.86
5588 5664 7.591057 TGAACGCTTAGAATTGTCTTTCATTTG 59.409 33.333 0.00 0.00 35.12 2.32
5644 5720 1.542472 TCATTGCACAGCTGATGTTGG 59.458 47.619 23.35 5.77 41.41 3.77
5862 6101 6.438425 TGATGCATATCCTCTAGCAGATAACA 59.562 38.462 0.00 7.54 40.71 2.41
5968 6207 5.649831 GCTATTCTCCAGACTTTGACCAAAT 59.350 40.000 0.00 0.00 0.00 2.32
6007 6246 0.320374 TACCAACCTGAGGAGTTGCG 59.680 55.000 4.99 0.00 42.63 4.85
6102 6341 5.683681 ACAAAGGGAAAACATCAGCAAATT 58.316 33.333 0.00 0.00 0.00 1.82
6205 6444 1.815003 GCACCAGCTCTTGCAGTTAAT 59.185 47.619 10.61 0.00 42.74 1.40
6857 7097 4.707563 CACGATTTAGCAAAACACGATCA 58.292 39.130 0.00 0.00 34.25 2.92
6930 7170 9.277783 AGTATGATGCCTGTATTCAGAAAATAC 57.722 33.333 0.12 1.83 43.76 1.89
6990 7392 4.638304 AGTACAAACTGTAGCCGAACAAT 58.362 39.130 0.00 0.00 32.84 2.71
7010 7412 3.324846 TCACTCTCACATGCCTACAAAGT 59.675 43.478 0.00 0.00 0.00 2.66
7011 7413 3.930336 TCACTCTCACATGCCTACAAAG 58.070 45.455 0.00 0.00 0.00 2.77
7012 7414 4.350368 TTCACTCTCACATGCCTACAAA 57.650 40.909 0.00 0.00 0.00 2.83
7013 7415 4.558226 ATTCACTCTCACATGCCTACAA 57.442 40.909 0.00 0.00 0.00 2.41
7014 7416 5.876651 ATATTCACTCTCACATGCCTACA 57.123 39.130 0.00 0.00 0.00 2.74
7015 7417 6.051717 ACAATATTCACTCTCACATGCCTAC 58.948 40.000 0.00 0.00 0.00 3.18
7016 7418 6.239217 ACAATATTCACTCTCACATGCCTA 57.761 37.500 0.00 0.00 0.00 3.93
7086 7488 8.139350 ACGCAGCATACTGTTATTTGTAGTATA 58.861 33.333 0.00 0.00 46.30 1.47
7277 7680 3.605461 CGTCACTGACTTCACAAATGCTG 60.605 47.826 7.58 0.00 0.00 4.41
7367 7770 9.760660 CCGTATTGAAATCTCTAAAAAGACTTG 57.239 33.333 0.00 0.00 0.00 3.16
7629 8032 0.034477 ACCCGGTAAGCATTCTTGGG 60.034 55.000 0.00 0.00 38.41 4.12
7930 8333 4.588899 ACGGAATGAAGTTGATGGATGAA 58.411 39.130 0.00 0.00 0.00 2.57
7949 8352 2.868583 CAAGGCATCATCAGTAAGACGG 59.131 50.000 0.00 0.00 0.00 4.79
8155 8558 7.102993 GGCCTCCAAAGAATAAAAATAAAGCA 58.897 34.615 0.00 0.00 0.00 3.91
8262 8665 8.669946 ACAAATTAATTACAACCCAAACCAAG 57.330 30.769 0.01 0.00 0.00 3.61
8325 8728 3.903644 CGCAACAAATCGACATTTAACGT 59.096 39.130 0.00 0.00 30.51 3.99
8389 8792 2.624838 CAGGAGTGCAAAAATGAGGTGT 59.375 45.455 0.00 0.00 0.00 4.16
8456 8859 7.936584 ACATTTTCGGAAGTTCAACATCTTTA 58.063 30.769 5.01 0.00 0.00 1.85
8486 8889 1.337703 GCAGAGAACACACATTTGGCA 59.662 47.619 0.00 0.00 0.00 4.92
8533 8936 3.641906 CTCCCAAATCCGATAGTACCAGT 59.358 47.826 0.00 0.00 0.00 4.00
8534 8937 3.006967 CCTCCCAAATCCGATAGTACCAG 59.993 52.174 0.00 0.00 0.00 4.00
8535 8938 2.969950 CCTCCCAAATCCGATAGTACCA 59.030 50.000 0.00 0.00 0.00 3.25
8536 8939 3.236896 TCCTCCCAAATCCGATAGTACC 58.763 50.000 0.00 0.00 0.00 3.34
8537 8940 4.081586 GGATCCTCCCAAATCCGATAGTAC 60.082 50.000 3.84 0.00 32.62 2.73
8538 8941 4.094476 GGATCCTCCCAAATCCGATAGTA 58.906 47.826 3.84 0.00 32.62 1.82
8539 8942 2.907042 GGATCCTCCCAAATCCGATAGT 59.093 50.000 3.84 0.00 32.62 2.12
8540 8943 2.906389 TGGATCCTCCCAAATCCGATAG 59.094 50.000 14.23 0.00 43.73 2.08
8541 8944 2.984672 TGGATCCTCCCAAATCCGATA 58.015 47.619 14.23 0.00 43.73 2.92
8542 8945 1.819753 TGGATCCTCCCAAATCCGAT 58.180 50.000 14.23 0.00 43.73 4.18
8654 9057 2.883572 GAGAGCTCGGTCCCAGTAA 58.116 57.895 8.37 0.00 0.00 2.24
8780 9188 4.637977 TGTGCTTTATATGCCGATTTGACA 59.362 37.500 0.00 0.00 0.00 3.58
8808 9216 3.542969 AGCCTCCCTTTTTAACATGGT 57.457 42.857 0.00 0.00 0.00 3.55
8903 9311 2.265367 TGATGCACCTTAGGAGGACAA 58.735 47.619 4.77 0.00 46.74 3.18
8960 9369 9.790297 ACACCCCTTCTACTGATATTCATATAT 57.210 33.333 0.00 0.00 0.00 0.86
9019 9428 1.339151 GCCCTCCATCTTCGAACAACT 60.339 52.381 0.00 0.00 0.00 3.16
9041 9450 8.550710 TCATCCATTTGCATTTTAGAAAAAGG 57.449 30.769 0.00 0.00 0.00 3.11
9063 9472 1.089920 GCTCGCCATCTGTGTTTCAT 58.910 50.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.