Multiple sequence alignment - TraesCS5A01G201600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G201600 chr5A 100.000 2894 0 0 1 2894 407939758 407942651 0.000000e+00 5345
1 TraesCS5A01G201600 chr5A 83.305 593 65 30 2324 2891 320446032 320445449 1.540000e-142 516
2 TraesCS5A01G201600 chr5D 94.685 2145 91 13 660 2792 313843019 313845152 0.000000e+00 3308
3 TraesCS5A01G201600 chr5D 98.406 690 8 2 1 689 313842326 313843013 0.000000e+00 1210
4 TraesCS5A01G201600 chr5B 93.103 667 36 3 1 665 361542265 361542923 0.000000e+00 968
5 TraesCS5A01G201600 chr5B 83.590 585 73 19 2326 2891 416881370 416881950 7.100000e-146 527
6 TraesCS5A01G201600 chr2D 85.886 581 57 17 2324 2891 202291013 202291581 1.920000e-166 595
7 TraesCS5A01G201600 chr3A 84.220 583 74 13 2324 2891 615035151 615035730 4.210000e-153 551
8 TraesCS5A01G201600 chr4D 84.310 580 63 24 2330 2891 98583818 98584387 2.540000e-150 542
9 TraesCS5A01G201600 chr6B 83.362 583 77 17 2324 2891 157010241 157010818 3.300000e-144 521
10 TraesCS5A01G201600 chr3B 83.419 585 72 19 2324 2891 244967332 244967908 1.190000e-143 520
11 TraesCS5A01G201600 chr7A 83.390 590 67 25 2324 2894 356365047 356364470 4.270000e-143 518


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G201600 chr5A 407939758 407942651 2893 False 5345 5345 100.0000 1 2894 1 chr5A.!!$F1 2893
1 TraesCS5A01G201600 chr5A 320445449 320446032 583 True 516 516 83.3050 2324 2891 1 chr5A.!!$R1 567
2 TraesCS5A01G201600 chr5D 313842326 313845152 2826 False 2259 3308 96.5455 1 2792 2 chr5D.!!$F1 2791
3 TraesCS5A01G201600 chr5B 361542265 361542923 658 False 968 968 93.1030 1 665 1 chr5B.!!$F1 664
4 TraesCS5A01G201600 chr5B 416881370 416881950 580 False 527 527 83.5900 2326 2891 1 chr5B.!!$F2 565
5 TraesCS5A01G201600 chr2D 202291013 202291581 568 False 595 595 85.8860 2324 2891 1 chr2D.!!$F1 567
6 TraesCS5A01G201600 chr3A 615035151 615035730 579 False 551 551 84.2200 2324 2891 1 chr3A.!!$F1 567
7 TraesCS5A01G201600 chr4D 98583818 98584387 569 False 542 542 84.3100 2330 2891 1 chr4D.!!$F1 561
8 TraesCS5A01G201600 chr6B 157010241 157010818 577 False 521 521 83.3620 2324 2891 1 chr6B.!!$F1 567
9 TraesCS5A01G201600 chr3B 244967332 244967908 576 False 520 520 83.4190 2324 2891 1 chr3B.!!$F1 567
10 TraesCS5A01G201600 chr7A 356364470 356365047 577 True 518 518 83.3900 2324 2894 1 chr7A.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 304 0.467290 AGGAGATGGCGAGGAGAGAC 60.467 60.0 0.0 0.0 0.0 3.36 F
924 963 0.605319 GTGGCATGGGAGTTTCGTGA 60.605 55.0 0.0 0.0 0.0 4.35 F
1838 1877 0.251077 AAGGGCAGCTCAAGTGAAGG 60.251 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1115 1154 0.536233 TTGGTGCTTGCTCGCCTTTA 60.536 50.0 5.62 0.0 37.51 1.85 R
1882 1921 0.693092 TGCCTCCACTACCCATACCC 60.693 60.0 0.00 0.0 0.00 3.69 R
2677 2749 0.956633 TCCTTCGTGTGACGTAAGCT 59.043 50.0 0.00 0.0 43.14 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 7.396540 ACACCACATCAAATCCTCTAAAATC 57.603 36.000 0.00 0.00 0.00 2.17
302 304 0.467290 AGGAGATGGCGAGGAGAGAC 60.467 60.000 0.00 0.00 0.00 3.36
455 457 1.764454 GTTGGGGTTTGGGCTTGGT 60.764 57.895 0.00 0.00 0.00 3.67
456 458 1.458588 TTGGGGTTTGGGCTTGGTC 60.459 57.895 0.00 0.00 0.00 4.02
531 535 4.095036 GGTAGTTCTGGTTTATGCAAGCTC 59.905 45.833 0.00 0.00 33.66 4.09
649 653 1.606601 CATCTCCGCCCCTATCCGA 60.607 63.158 0.00 0.00 0.00 4.55
689 693 4.989458 TGGGTGCCCAAGAGAGTA 57.011 55.556 7.63 0.00 44.12 2.59
813 852 3.189080 TCCACAAAAGAGTGCATGATTCG 59.811 43.478 0.00 0.00 38.18 3.34
816 855 3.814842 ACAAAAGAGTGCATGATTCGTCA 59.185 39.130 0.00 0.00 0.00 4.35
876 915 3.030291 CCATCCTAGTGCTCTCTCAAGT 58.970 50.000 0.00 0.00 0.00 3.16
881 920 1.876322 AGTGCTCTCTCAAGTTGTGC 58.124 50.000 2.11 2.36 0.00 4.57
898 937 2.650116 GCGGGAGAACCTGAGAGCA 61.650 63.158 0.00 0.00 44.87 4.26
910 949 0.906282 TGAGAGCAGGATCTGTGGCA 60.906 55.000 0.00 0.00 33.43 4.92
924 963 0.605319 GTGGCATGGGAGTTTCGTGA 60.605 55.000 0.00 0.00 0.00 4.35
966 1005 1.632740 GGGGGAGGTAGGTGGAGAT 59.367 63.158 0.00 0.00 0.00 2.75
1054 1093 4.748701 AGTAGAGGGTAAGTTGAAGGACA 58.251 43.478 0.00 0.00 0.00 4.02
1058 1097 2.092323 GGGTAAGTTGAAGGACATGCC 58.908 52.381 0.00 0.00 0.00 4.40
1060 1099 2.423577 GTAAGTTGAAGGACATGCCGT 58.576 47.619 0.00 0.00 43.43 5.68
1066 1105 0.798776 GAAGGACATGCCGTTGTCAG 59.201 55.000 12.00 0.00 46.32 3.51
1081 1120 3.018598 TGTCAGAAGCTGAGAAGAACG 57.981 47.619 0.00 0.00 41.46 3.95
1115 1154 1.271656 GAAGAAGCAAGCATGTGCCTT 59.728 47.619 4.77 2.80 46.14 4.35
1116 1155 2.205022 AGAAGCAAGCATGTGCCTTA 57.795 45.000 4.77 0.00 46.14 2.69
1136 1175 4.410743 GGCGAGCAAGCACCAAGC 62.411 66.667 5.80 0.00 46.19 4.01
1157 1196 3.494048 GCAGTGGGTAAGATCCTCTCATG 60.494 52.174 0.00 0.00 0.00 3.07
1226 1265 1.128692 GTGCCCGTTCTCAGAAATTCG 59.871 52.381 0.00 0.00 0.00 3.34
1248 1287 3.928727 TGCAAAGATCTTGGCAGAAAG 57.071 42.857 29.89 5.49 43.99 2.62
1308 1347 2.222227 AAGCTTTGGAAGATGGACCC 57.778 50.000 0.00 0.00 0.00 4.46
1349 1388 5.631119 TCTGATAGTGATGGAGGATTACGA 58.369 41.667 0.00 0.00 0.00 3.43
1391 1430 8.047310 AGACGAGTATGAATTTAAAACCATCCT 58.953 33.333 8.41 4.24 0.00 3.24
1442 1481 6.712547 CCTATGGGGATGATGAGTAAAGAAAC 59.287 42.308 0.00 0.00 37.23 2.78
1452 1491 6.434028 TGATGAGTAAAGAAACAGGGGATTTG 59.566 38.462 0.00 0.00 0.00 2.32
1502 1541 9.123902 CCTTAATGTGGATTTAGATGACAATGA 57.876 33.333 0.00 0.00 0.00 2.57
1538 1577 4.331962 GCTTTTACGAGGATTAAAGTGCG 58.668 43.478 0.00 0.00 31.81 5.34
1542 1581 2.884827 ACGAGGATTAAAGTGCGTACC 58.115 47.619 0.00 0.00 0.00 3.34
1552 1591 7.169645 GGATTAAAGTGCGTACCGATATTACAA 59.830 37.037 0.00 0.00 0.00 2.41
1562 1601 7.373493 CGTACCGATATTACAACTCCCTTAAT 58.627 38.462 0.00 0.00 0.00 1.40
1604 1643 2.100418 CTGATGACGATGAGGAAGAGCA 59.900 50.000 0.00 0.00 0.00 4.26
1741 1780 9.647797 GTTATAATTGTGGTATCATCGGACATA 57.352 33.333 0.00 0.00 0.00 2.29
1744 1783 5.346181 TTGTGGTATCATCGGACATACAA 57.654 39.130 9.84 0.00 0.00 2.41
1776 1815 4.074970 GCCCAACAAGATCAAGAAGAGAA 58.925 43.478 0.00 0.00 0.00 2.87
1838 1877 0.251077 AAGGGCAGCTCAAGTGAAGG 60.251 55.000 0.00 0.00 0.00 3.46
1841 1880 1.615384 GGGCAGCTCAAGTGAAGGAAT 60.615 52.381 0.00 0.00 0.00 3.01
1849 1888 6.258287 CAGCTCAAGTGAAGGAATGAATAGAG 59.742 42.308 0.00 0.00 0.00 2.43
1853 1892 7.461749 TCAAGTGAAGGAATGAATAGAGGTTT 58.538 34.615 0.00 0.00 0.00 3.27
1882 1921 0.969149 GGGGGTTTTGGAGAAGCAAG 59.031 55.000 0.00 0.00 0.00 4.01
1883 1922 0.969149 GGGGTTTTGGAGAAGCAAGG 59.031 55.000 0.00 0.00 0.00 3.61
1894 1933 2.772515 GAGAAGCAAGGGTATGGGTAGT 59.227 50.000 0.00 0.00 0.00 2.73
1916 1955 2.173382 GCAGCAAACACGGTAGCG 59.827 61.111 13.69 13.69 0.00 4.26
1965 2004 4.952071 TGGATAGAGCTGATGGAGAAAG 57.048 45.455 0.00 0.00 0.00 2.62
1981 2020 4.417183 GGAGAAAGATTAAGGGAAGGGGAT 59.583 45.833 0.00 0.00 0.00 3.85
2004 2043 1.456919 AAGGAAGTTACAAGCCCCCT 58.543 50.000 0.00 0.00 0.00 4.79
2005 2044 2.354261 AGGAAGTTACAAGCCCCCTA 57.646 50.000 0.00 0.00 0.00 3.53
2035 2075 1.063183 AGGAAGAACAAGCTGGCTCT 58.937 50.000 0.00 0.00 0.00 4.09
2138 2178 1.079750 GTCGACTGTCTTGGAGGGC 60.080 63.158 8.70 0.00 0.00 5.19
2153 2193 2.843701 GAGGGCTCCACATCAATACAG 58.156 52.381 0.00 0.00 0.00 2.74
2196 2236 3.006967 ACAGACATCCGAAGTTGTAGCTT 59.993 43.478 0.00 0.00 0.00 3.74
2250 2290 7.050377 TGCTGGTTTCAATTCCAATAAAACAA 58.950 30.769 10.23 2.19 32.75 2.83
2252 2292 8.567104 GCTGGTTTCAATTCCAATAAAACAAAT 58.433 29.630 10.23 0.00 32.75 2.32
2282 2322 4.262420 GGAGCAGAAATTTGTAAAGGGCAA 60.262 41.667 0.00 0.00 0.00 4.52
2287 2327 6.204495 GCAGAAATTTGTAAAGGGCAATCAAA 59.796 34.615 0.00 0.00 33.61 2.69
2301 2341 3.733077 GCAATCAAATGGAGGAAGAAGCG 60.733 47.826 0.00 0.00 0.00 4.68
2350 2390 4.218852 GGATCGAAAGTATGTCTAGAGGGG 59.781 50.000 0.00 0.00 0.00 4.79
2549 2608 4.383649 CGCAATGAAGACAAGGTGATTTTG 59.616 41.667 0.00 0.00 0.00 2.44
2614 2686 3.860930 TTCAACCCAAGGAGGCGCC 62.861 63.158 21.89 21.89 35.39 6.53
2656 2728 0.317479 CGAAGGGTCCACGAAGAAGT 59.683 55.000 0.00 0.00 0.00 3.01
2677 2749 6.182507 AGTAAACTTGTCTATTCCACCACA 57.817 37.500 0.00 0.00 0.00 4.17
2715 2788 3.113043 GGACTAACCTCACTTGGGGTAT 58.887 50.000 0.00 0.00 35.09 2.73
2735 2808 6.094061 GGTATATCTTCATGAAGTAGGCGAC 58.906 44.000 29.80 20.76 39.38 5.19
2781 2855 4.041567 TGGCTCAACTCCACAAGATCTTAA 59.958 41.667 7.86 0.00 0.00 1.85
2788 2862 4.534103 ACTCCACAAGATCTTAAAGGCTCT 59.466 41.667 7.86 0.00 0.00 4.09
2794 2868 5.721960 ACAAGATCTTAAAGGCTCTCAGGTA 59.278 40.000 7.86 0.00 0.00 3.08
2838 2912 7.690256 AGACACCACTCTTCAAAAGGTAATAT 58.310 34.615 0.00 0.00 0.00 1.28
2891 2966 6.524734 TCTTGTGCTTCAAAAGATAGTCTCA 58.475 36.000 0.00 0.00 33.33 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.420168 ACAAATTGGATAAACGCATTCGG 58.580 39.130 0.00 0.00 40.69 4.30
455 457 2.599281 TCGGTGACCTCCAAGCGA 60.599 61.111 0.00 0.00 43.32 4.93
456 458 2.432628 GTCGGTGACCTCCAAGCG 60.433 66.667 0.00 0.00 38.58 4.68
531 535 1.209275 GAGGATTGGCGATCGTCACG 61.209 60.000 24.15 0.00 44.95 4.35
649 653 2.288640 CCTCCGAGTTGTTTTACCTCGT 60.289 50.000 7.41 0.00 44.91 4.18
689 693 2.151202 GAAACCGTCATGTGTGGACAT 58.849 47.619 7.47 0.00 44.08 3.06
715 754 1.006102 CCACGAAGTCGCCAGAAGT 60.006 57.895 0.00 0.00 41.61 3.01
738 777 3.636231 CCGACCAAGGGTGCTGGA 61.636 66.667 0.00 0.00 35.25 3.86
744 783 0.112412 AAAGATTGCCGACCAAGGGT 59.888 50.000 0.00 0.00 39.44 4.34
771 810 5.181245 GTGGATTTGAAACTCTCGGATTCAA 59.819 40.000 1.44 1.44 42.29 2.69
772 811 4.695455 GTGGATTTGAAACTCTCGGATTCA 59.305 41.667 0.00 0.00 35.43 2.57
783 822 5.108517 TGCACTCTTTTGTGGATTTGAAAC 58.891 37.500 0.00 0.00 38.31 2.78
787 826 4.873817 TCATGCACTCTTTTGTGGATTTG 58.126 39.130 0.00 0.00 44.56 2.32
813 852 2.526120 GCGCCGCTACCAGATTGAC 61.526 63.158 0.00 0.00 0.00 3.18
816 855 2.202932 CTGCGCCGCTACCAGATT 60.203 61.111 11.67 0.00 0.00 2.40
876 915 1.118965 TCTCAGGTTCTCCCGCACAA 61.119 55.000 0.00 0.00 38.74 3.33
881 920 1.515020 CTGCTCTCAGGTTCTCCCG 59.485 63.158 0.00 0.00 38.74 5.14
898 937 0.622738 ACTCCCATGCCACAGATCCT 60.623 55.000 0.00 0.00 0.00 3.24
910 949 2.859165 ACACATCACGAAACTCCCAT 57.141 45.000 0.00 0.00 0.00 4.00
924 963 4.323562 GCCTCCCTACAAGAACTAACACAT 60.324 45.833 0.00 0.00 0.00 3.21
1054 1093 0.035317 TCAGCTTCTGACAACGGCAT 59.965 50.000 0.00 0.00 35.39 4.40
1058 1097 3.018598 TCTTCTCAGCTTCTGACAACG 57.981 47.619 0.00 0.00 35.39 4.10
1060 1099 3.068165 TCGTTCTTCTCAGCTTCTGACAA 59.932 43.478 0.00 0.00 35.39 3.18
1066 1105 4.092675 CCTGATTTCGTTCTTCTCAGCTTC 59.907 45.833 0.00 0.00 33.58 3.86
1081 1120 2.875317 GCTTCTTCCCGATCCTGATTTC 59.125 50.000 0.00 0.00 0.00 2.17
1115 1154 0.536233 TTGGTGCTTGCTCGCCTTTA 60.536 50.000 5.62 0.00 37.51 1.85
1116 1155 1.799258 CTTGGTGCTTGCTCGCCTTT 61.799 55.000 5.62 0.00 37.51 3.11
1149 1188 0.543277 TTGCCTGCCTACATGAGAGG 59.457 55.000 12.46 12.46 37.12 3.69
1226 1265 1.538047 TCTGCCAAGATCTTTGCACC 58.462 50.000 25.76 3.41 36.48 5.01
1248 1287 7.732222 ATCATGGATATTAGAGAGGAACCTC 57.268 40.000 12.42 12.42 43.03 3.85
1335 1374 6.990349 TCTTATTTGGTTCGTAATCCTCCATC 59.010 38.462 0.00 0.00 0.00 3.51
1366 1405 8.122952 CAGGATGGTTTTAAATTCATACTCGTC 58.877 37.037 11.09 2.94 29.03 4.20
1391 1430 4.044308 TCCATAGGCTCTTACCCAAATCA 58.956 43.478 0.00 0.00 0.00 2.57
1442 1481 2.037772 CGATCTCCTACCAAATCCCCTG 59.962 54.545 0.00 0.00 0.00 4.45
1452 1491 2.300437 CTCCCCAATTCGATCTCCTACC 59.700 54.545 0.00 0.00 0.00 3.18
1538 1577 8.362639 TCATTAAGGGAGTTGTAATATCGGTAC 58.637 37.037 0.00 0.00 0.00 3.34
1542 1581 9.712305 AATCTCATTAAGGGAGTTGTAATATCG 57.288 33.333 6.78 0.00 34.04 2.92
1569 1608 7.981225 TCATCGTCATCAGTGATCAAAATTCTA 59.019 33.333 1.56 0.00 36.60 2.10
1570 1609 6.820152 TCATCGTCATCAGTGATCAAAATTCT 59.180 34.615 1.56 0.00 36.60 2.40
1604 1643 1.005215 CCTCTTCATTGGGCAACTCCT 59.995 52.381 0.00 0.00 34.39 3.69
1722 1761 5.346181 TTGTATGTCCGATGATACCACAA 57.654 39.130 0.00 0.00 0.00 3.33
1741 1780 0.752658 GTTGGGCAAGCCTTCTTTGT 59.247 50.000 11.40 0.00 36.10 2.83
1744 1783 1.043022 CTTGTTGGGCAAGCCTTCTT 58.957 50.000 11.40 0.00 46.68 2.52
1771 1810 4.080638 CCCAAAATGTCTAGCTCCTTCTCT 60.081 45.833 0.00 0.00 0.00 3.10
1772 1811 4.195416 CCCAAAATGTCTAGCTCCTTCTC 58.805 47.826 0.00 0.00 0.00 2.87
1776 1815 1.064389 GGCCCAAAATGTCTAGCTCCT 60.064 52.381 0.00 0.00 0.00 3.69
1838 1877 4.271291 GGTCGCTCAAACCTCTATTCATTC 59.729 45.833 0.00 0.00 33.78 2.67
1841 1880 2.416836 CGGTCGCTCAAACCTCTATTCA 60.417 50.000 0.00 0.00 34.45 2.57
1871 1910 0.918983 CCCATACCCTTGCTTCTCCA 59.081 55.000 0.00 0.00 0.00 3.86
1878 1917 1.141053 CTCCACTACCCATACCCTTGC 59.859 57.143 0.00 0.00 0.00 4.01
1882 1921 0.693092 TGCCTCCACTACCCATACCC 60.693 60.000 0.00 0.00 0.00 3.69
1883 1922 0.759346 CTGCCTCCACTACCCATACC 59.241 60.000 0.00 0.00 0.00 2.73
1894 1933 2.046009 TACCGTGTTTGCTGCCTCCA 62.046 55.000 0.00 0.00 0.00 3.86
1916 1955 0.991920 TTCCTCCAGGTTGGTCCATC 59.008 55.000 0.00 0.00 39.03 3.51
1965 2004 4.895889 CCTTTTCATCCCCTTCCCTTAATC 59.104 45.833 0.00 0.00 0.00 1.75
1981 2020 3.227614 GGGGCTTGTAACTTCCTTTTCA 58.772 45.455 0.00 0.00 0.00 2.69
2004 2043 8.141268 CAGCTTGTTCTTCCTTGGTTATTTTTA 58.859 33.333 0.00 0.00 0.00 1.52
2005 2044 6.986231 CAGCTTGTTCTTCCTTGGTTATTTTT 59.014 34.615 0.00 0.00 0.00 1.94
2051 2091 8.362639 ACAAGTTGATTATCTGCAAAATTCAGT 58.637 29.630 10.54 0.00 33.48 3.41
2052 2092 8.752766 ACAAGTTGATTATCTGCAAAATTCAG 57.247 30.769 10.54 0.00 0.00 3.02
2138 2178 2.171237 TGCCTCCTGTATTGATGTGGAG 59.829 50.000 0.00 0.00 42.72 3.86
2142 2182 1.492176 CCCTGCCTCCTGTATTGATGT 59.508 52.381 0.00 0.00 0.00 3.06
2196 2236 1.529744 AGGTTCAGTTCCTTTCCCCA 58.470 50.000 0.00 0.00 30.18 4.96
2250 2290 4.021916 CAAATTTCTGCTCCTCTCCCATT 58.978 43.478 0.00 0.00 0.00 3.16
2252 2292 2.376518 ACAAATTTCTGCTCCTCTCCCA 59.623 45.455 0.00 0.00 0.00 4.37
2282 2322 2.239654 TCCGCTTCTTCCTCCATTTGAT 59.760 45.455 0.00 0.00 0.00 2.57
2287 2327 2.879103 TTTTCCGCTTCTTCCTCCAT 57.121 45.000 0.00 0.00 0.00 3.41
2301 2341 5.763698 ACACTTAGCAACTACTCCTTTTTCC 59.236 40.000 0.00 0.00 0.00 3.13
2350 2390 3.391296 TGGCCAAGTAGTCTAATCATCCC 59.609 47.826 0.61 0.00 0.00 3.85
2416 2469 6.650807 TCTTACTTGACTTGGTAGAATTGCTG 59.349 38.462 0.00 0.00 0.00 4.41
2656 2728 5.001232 GCTGTGGTGGAATAGACAAGTTTA 58.999 41.667 0.00 0.00 0.00 2.01
2677 2749 0.956633 TCCTTCGTGTGACGTAAGCT 59.043 50.000 0.00 0.00 43.14 3.74
2715 2788 4.215908 AGGTCGCCTACTTCATGAAGATA 58.784 43.478 36.15 23.38 41.42 1.98
2735 2808 2.437413 GAGTTTGTAAGGGCAAGGAGG 58.563 52.381 0.00 0.00 0.00 4.30
2794 2868 5.046520 GTGTCTCCTAGATTGGTTAGGTGTT 60.047 44.000 0.00 0.00 39.01 3.32
2838 2912 5.647658 GGAGTTCATCATCAACAACACCATA 59.352 40.000 0.00 0.00 31.79 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.