Multiple sequence alignment - TraesCS5A01G201400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G201400 chr5A 100.000 3929 0 0 1 3929 407547646 407543718 0.000000e+00 7256.0
1 TraesCS5A01G201400 chr5A 94.565 92 5 0 1987 2078 24400544 24400635 4.090000e-30 143.0
2 TraesCS5A01G201400 chr5B 89.393 3394 169 68 681 3929 361006475 361003128 0.000000e+00 4096.0
3 TraesCS5A01G201400 chr5D 90.394 3175 154 57 832 3929 313372477 313369377 0.000000e+00 4034.0
4 TraesCS5A01G201400 chr5D 81.623 604 73 17 226 816 313373415 313372837 2.140000e-127 466.0
5 TraesCS5A01G201400 chr7D 80.403 546 96 11 1860 2398 189171230 189171771 4.730000e-109 405.0
6 TraesCS5A01G201400 chr6D 87.500 240 15 7 2548 2787 388109675 388109451 3.010000e-66 263.0
7 TraesCS5A01G201400 chr6D 93.204 103 6 1 2523 2625 16285958 16285857 2.450000e-32 150.0
8 TraesCS5A01G201400 chr7B 90.210 143 13 1 2303 2444 497452704 497452562 6.700000e-43 185.0
9 TraesCS5A01G201400 chr2A 94.048 84 5 0 1995 2078 763914381 763914464 1.150000e-25 128.0
10 TraesCS5A01G201400 chr1B 94.048 84 5 0 1995 2078 103066660 103066577 1.150000e-25 128.0
11 TraesCS5A01G201400 chr1B 94.048 84 5 0 1995 2078 556390775 556390692 1.150000e-25 128.0
12 TraesCS5A01G201400 chr2B 83.544 79 10 3 148 224 4632968 4633045 1.960000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G201400 chr5A 407543718 407547646 3928 True 7256 7256 100.0000 1 3929 1 chr5A.!!$R1 3928
1 TraesCS5A01G201400 chr5B 361003128 361006475 3347 True 4096 4096 89.3930 681 3929 1 chr5B.!!$R1 3248
2 TraesCS5A01G201400 chr5D 313369377 313373415 4038 True 2250 4034 86.0085 226 3929 2 chr5D.!!$R1 3703
3 TraesCS5A01G201400 chr7D 189171230 189171771 541 False 405 405 80.4030 1860 2398 1 chr7D.!!$F1 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 497 0.025001 GTCCATCGACGTTTGATGCG 59.975 55.0 20.32 15.2 41.48 4.73 F
1007 1370 0.179032 CCAAACCCCAAAAGCAACCC 60.179 55.0 0.00 0.0 0.00 4.11 F
2823 3233 0.465460 ATCGCCGCCACCATTTGTAT 60.465 50.0 0.00 0.0 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1384 1770 0.391793 GGGGCAAGAAGGAGAGTTCG 60.392 60.000 0.00 0.00 0.00 3.95 R
2876 3287 0.250081 GGGATTCATCCTCTCGTGGC 60.250 60.000 5.80 0.00 46.35 5.01 R
3855 4345 1.144093 ACTCCACCTATCCTCCTCGAG 59.856 57.143 5.13 5.13 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.657074 CAAATCTAGTATACAAATTCACCGGA 57.343 34.615 9.46 0.00 0.00 5.14
26 27 9.104965 CAAATCTAGTATACAAATTCACCGGAA 57.895 33.333 9.46 0.00 37.45 4.30
27 28 9.847224 AAATCTAGTATACAAATTCACCGGAAT 57.153 29.630 9.46 0.00 45.57 3.01
39 40 4.837093 TCACCGGAATTACAAAGGATCT 57.163 40.909 9.46 0.00 0.00 2.75
40 41 5.174037 TCACCGGAATTACAAAGGATCTT 57.826 39.130 9.46 0.00 0.00 2.40
41 42 4.941263 TCACCGGAATTACAAAGGATCTTG 59.059 41.667 9.46 0.00 0.00 3.02
42 43 4.941263 CACCGGAATTACAAAGGATCTTGA 59.059 41.667 9.46 0.00 0.00 3.02
43 44 4.941873 ACCGGAATTACAAAGGATCTTGAC 59.058 41.667 9.46 0.00 0.00 3.18
44 45 4.335594 CCGGAATTACAAAGGATCTTGACC 59.664 45.833 0.00 0.00 0.00 4.02
45 46 5.186198 CGGAATTACAAAGGATCTTGACCT 58.814 41.667 1.96 0.00 39.69 3.85
47 48 6.403636 CGGAATTACAAAGGATCTTGACCTTG 60.404 42.308 0.00 0.00 45.55 3.61
48 49 6.434340 GGAATTACAAAGGATCTTGACCTTGT 59.566 38.462 0.00 0.56 45.55 3.16
49 50 7.362142 GGAATTACAAAGGATCTTGACCTTGTC 60.362 40.741 0.00 0.00 45.55 3.18
50 51 3.403038 ACAAAGGATCTTGACCTTGTCG 58.597 45.455 0.00 0.00 45.55 4.35
51 52 3.071023 ACAAAGGATCTTGACCTTGTCGA 59.929 43.478 0.00 0.00 45.55 4.20
52 53 4.256920 CAAAGGATCTTGACCTTGTCGAT 58.743 43.478 0.00 0.00 45.55 3.59
53 54 5.046591 ACAAAGGATCTTGACCTTGTCGATA 60.047 40.000 0.00 0.00 45.55 2.92
54 55 5.878406 AAGGATCTTGACCTTGTCGATAT 57.122 39.130 0.00 0.00 44.73 1.63
55 56 5.878406 AGGATCTTGACCTTGTCGATATT 57.122 39.130 0.00 0.00 34.95 1.28
56 57 5.848406 AGGATCTTGACCTTGTCGATATTC 58.152 41.667 0.00 0.00 34.95 1.75
57 58 5.600484 AGGATCTTGACCTTGTCGATATTCT 59.400 40.000 0.00 0.00 34.95 2.40
58 59 5.694006 GGATCTTGACCTTGTCGATATTCTG 59.306 44.000 0.00 0.00 34.95 3.02
59 60 5.914898 TCTTGACCTTGTCGATATTCTGA 57.085 39.130 0.00 0.00 34.95 3.27
60 61 5.895928 TCTTGACCTTGTCGATATTCTGAG 58.104 41.667 0.00 0.00 34.95 3.35
61 62 5.652452 TCTTGACCTTGTCGATATTCTGAGA 59.348 40.000 0.00 0.00 34.95 3.27
62 63 6.322456 TCTTGACCTTGTCGATATTCTGAGAT 59.678 38.462 0.00 0.00 34.95 2.75
63 64 6.078202 TGACCTTGTCGATATTCTGAGATC 57.922 41.667 0.00 0.00 34.95 2.75
64 65 5.594317 TGACCTTGTCGATATTCTGAGATCA 59.406 40.000 0.00 0.00 34.95 2.92
65 66 6.266330 TGACCTTGTCGATATTCTGAGATCAT 59.734 38.462 0.00 0.00 34.95 2.45
66 67 7.060383 ACCTTGTCGATATTCTGAGATCATT 57.940 36.000 0.00 0.00 0.00 2.57
67 68 6.927936 ACCTTGTCGATATTCTGAGATCATTG 59.072 38.462 0.00 0.00 0.00 2.82
68 69 7.150640 CCTTGTCGATATTCTGAGATCATTGA 58.849 38.462 0.00 0.00 0.00 2.57
69 70 7.654923 CCTTGTCGATATTCTGAGATCATTGAA 59.345 37.037 0.00 0.00 0.00 2.69
70 71 7.936950 TGTCGATATTCTGAGATCATTGAAC 57.063 36.000 0.00 0.00 0.00 3.18
71 72 6.638468 TGTCGATATTCTGAGATCATTGAACG 59.362 38.462 0.00 0.00 0.00 3.95
72 73 6.858478 GTCGATATTCTGAGATCATTGAACGA 59.142 38.462 0.00 0.00 0.00 3.85
73 74 6.858478 TCGATATTCTGAGATCATTGAACGAC 59.142 38.462 0.00 0.00 0.00 4.34
74 75 6.088749 CGATATTCTGAGATCATTGAACGACC 59.911 42.308 0.00 0.00 0.00 4.79
75 76 4.535526 TTCTGAGATCATTGAACGACCA 57.464 40.909 0.00 0.00 0.00 4.02
76 77 3.849911 TCTGAGATCATTGAACGACCAC 58.150 45.455 0.00 0.00 0.00 4.16
77 78 3.511540 TCTGAGATCATTGAACGACCACT 59.488 43.478 0.00 0.00 0.00 4.00
78 79 4.705023 TCTGAGATCATTGAACGACCACTA 59.295 41.667 0.00 0.00 0.00 2.74
79 80 4.744570 TGAGATCATTGAACGACCACTAC 58.255 43.478 0.00 0.00 0.00 2.73
80 81 4.462834 TGAGATCATTGAACGACCACTACT 59.537 41.667 0.00 0.00 0.00 2.57
81 82 4.748892 AGATCATTGAACGACCACTACTG 58.251 43.478 0.00 0.00 0.00 2.74
82 83 4.220821 AGATCATTGAACGACCACTACTGT 59.779 41.667 0.00 0.00 0.00 3.55
83 84 3.909430 TCATTGAACGACCACTACTGTC 58.091 45.455 0.00 0.00 0.00 3.51
88 89 3.271014 GACCACTACTGTCGCCGA 58.729 61.111 0.00 0.00 0.00 5.54
89 90 1.154073 GACCACTACTGTCGCCGAC 60.154 63.158 10.96 10.96 0.00 4.79
90 91 1.859427 GACCACTACTGTCGCCGACA 61.859 60.000 20.04 20.04 40.50 4.35
91 92 1.248785 ACCACTACTGTCGCCGACAT 61.249 55.000 21.54 13.09 41.94 3.06
92 93 0.802222 CCACTACTGTCGCCGACATG 60.802 60.000 21.54 15.41 41.94 3.21
93 94 0.109272 CACTACTGTCGCCGACATGT 60.109 55.000 21.54 20.79 41.94 3.21
94 95 0.170561 ACTACTGTCGCCGACATGTC 59.829 55.000 21.54 16.21 41.94 3.06
95 96 0.170339 CTACTGTCGCCGACATGTCA 59.830 55.000 21.54 5.31 41.94 3.58
96 97 0.109458 TACTGTCGCCGACATGTCAC 60.109 55.000 21.54 15.56 41.94 3.67
97 98 1.080501 CTGTCGCCGACATGTCACT 60.081 57.895 21.54 0.00 41.94 3.41
98 99 1.347097 CTGTCGCCGACATGTCACTG 61.347 60.000 21.54 14.76 41.94 3.66
99 100 1.372997 GTCGCCGACATGTCACTGT 60.373 57.895 24.93 0.00 32.09 3.55
100 101 1.080772 TCGCCGACATGTCACTGTC 60.081 57.895 24.93 7.95 41.73 3.51
106 107 2.423926 GACATGTCACTGTCGTCACT 57.576 50.000 21.07 0.00 36.50 3.41
107 108 2.320367 GACATGTCACTGTCGTCACTC 58.680 52.381 21.07 0.00 36.50 3.51
108 109 1.957177 ACATGTCACTGTCGTCACTCT 59.043 47.619 0.00 0.00 0.00 3.24
109 110 2.030717 ACATGTCACTGTCGTCACTCTC 60.031 50.000 0.00 0.00 0.00 3.20
110 111 0.952280 TGTCACTGTCGTCACTCTCC 59.048 55.000 0.00 0.00 0.00 3.71
111 112 1.240256 GTCACTGTCGTCACTCTCCT 58.760 55.000 0.00 0.00 0.00 3.69
112 113 2.224450 TGTCACTGTCGTCACTCTCCTA 60.224 50.000 0.00 0.00 0.00 2.94
113 114 3.011119 GTCACTGTCGTCACTCTCCTAT 58.989 50.000 0.00 0.00 0.00 2.57
114 115 3.064271 GTCACTGTCGTCACTCTCCTATC 59.936 52.174 0.00 0.00 0.00 2.08
115 116 3.010420 CACTGTCGTCACTCTCCTATCA 58.990 50.000 0.00 0.00 0.00 2.15
116 117 3.064682 CACTGTCGTCACTCTCCTATCAG 59.935 52.174 0.00 0.00 0.00 2.90
117 118 3.055021 ACTGTCGTCACTCTCCTATCAGA 60.055 47.826 0.00 0.00 0.00 3.27
118 119 3.536570 TGTCGTCACTCTCCTATCAGAG 58.463 50.000 0.00 0.00 44.96 3.35
126 127 4.572985 CTCTCCTATCAGAGTGAGCTTG 57.427 50.000 0.00 0.00 35.98 4.01
127 128 4.206375 CTCTCCTATCAGAGTGAGCTTGA 58.794 47.826 0.00 0.00 35.98 3.02
128 129 3.951037 TCTCCTATCAGAGTGAGCTTGAC 59.049 47.826 0.00 0.00 35.28 3.18
129 130 3.027412 TCCTATCAGAGTGAGCTTGACC 58.973 50.000 0.00 0.00 0.00 4.02
130 131 3.030291 CCTATCAGAGTGAGCTTGACCT 58.970 50.000 0.00 0.00 0.00 3.85
131 132 3.450457 CCTATCAGAGTGAGCTTGACCTT 59.550 47.826 0.00 0.00 0.00 3.50
132 133 2.827800 TCAGAGTGAGCTTGACCTTG 57.172 50.000 0.00 0.00 0.00 3.61
133 134 2.042464 TCAGAGTGAGCTTGACCTTGT 58.958 47.619 0.00 0.00 0.00 3.16
134 135 2.036475 TCAGAGTGAGCTTGACCTTGTC 59.964 50.000 0.00 0.00 0.00 3.18
135 136 1.000283 AGAGTGAGCTTGACCTTGTCG 60.000 52.381 0.00 0.00 34.95 4.35
136 137 1.000163 GAGTGAGCTTGACCTTGTCGA 60.000 52.381 0.00 0.00 34.95 4.20
137 138 1.620819 AGTGAGCTTGACCTTGTCGAT 59.379 47.619 0.00 0.00 34.95 3.59
138 139 1.996191 GTGAGCTTGACCTTGTCGATC 59.004 52.381 0.00 0.00 34.95 3.69
139 140 1.272781 GAGCTTGACCTTGTCGATCG 58.727 55.000 9.36 9.36 34.95 3.69
140 141 0.737715 AGCTTGACCTTGTCGATCGC 60.738 55.000 11.09 6.41 34.95 4.58
141 142 1.014044 GCTTGACCTTGTCGATCGCA 61.014 55.000 11.09 9.23 34.95 5.10
142 143 0.994995 CTTGACCTTGTCGATCGCAG 59.005 55.000 11.09 6.04 34.95 5.18
143 144 0.317160 TTGACCTTGTCGATCGCAGT 59.683 50.000 11.09 7.13 34.95 4.40
144 145 0.109272 TGACCTTGTCGATCGCAGTC 60.109 55.000 11.09 15.20 34.95 3.51
145 146 1.134530 GACCTTGTCGATCGCAGTCG 61.135 60.000 11.09 5.80 42.74 4.18
146 147 1.874019 CCTTGTCGATCGCAGTCGG 60.874 63.158 11.09 9.52 41.74 4.79
147 148 1.136774 CTTGTCGATCGCAGTCGGA 59.863 57.895 11.09 0.00 41.74 4.55
148 149 0.456142 CTTGTCGATCGCAGTCGGAA 60.456 55.000 11.09 0.00 41.74 4.30
149 150 0.038983 TTGTCGATCGCAGTCGGAAA 60.039 50.000 11.09 1.25 41.74 3.13
150 151 0.172578 TGTCGATCGCAGTCGGAAAT 59.827 50.000 11.09 0.00 41.74 2.17
151 152 1.278238 GTCGATCGCAGTCGGAAATT 58.722 50.000 11.09 0.00 41.74 1.82
152 153 1.659098 GTCGATCGCAGTCGGAAATTT 59.341 47.619 11.09 0.00 41.74 1.82
153 154 1.658596 TCGATCGCAGTCGGAAATTTG 59.341 47.619 11.09 0.00 41.74 2.32
154 155 1.267532 CGATCGCAGTCGGAAATTTGG 60.268 52.381 0.26 0.00 37.94 3.28
155 156 0.451783 ATCGCAGTCGGAAATTTGGC 59.548 50.000 0.00 0.00 36.13 4.52
156 157 0.605319 TCGCAGTCGGAAATTTGGCT 60.605 50.000 0.00 0.00 36.13 4.75
157 158 1.083489 CGCAGTCGGAAATTTGGCTA 58.917 50.000 0.00 0.00 0.00 3.93
158 159 1.670811 CGCAGTCGGAAATTTGGCTAT 59.329 47.619 0.00 0.00 0.00 2.97
159 160 2.539547 CGCAGTCGGAAATTTGGCTATG 60.540 50.000 0.00 0.00 0.00 2.23
160 161 2.796032 GCAGTCGGAAATTTGGCTATGC 60.796 50.000 0.00 0.00 0.00 3.14
174 175 3.485947 GCTATGCCATTTGTTCGAACA 57.514 42.857 26.53 26.53 37.08 3.18
175 176 3.171277 GCTATGCCATTTGTTCGAACAC 58.829 45.455 29.74 18.17 38.92 3.32
176 177 3.119849 GCTATGCCATTTGTTCGAACACT 60.120 43.478 29.74 17.42 38.92 3.55
177 178 4.615912 GCTATGCCATTTGTTCGAACACTT 60.616 41.667 29.74 17.23 38.92 3.16
178 179 3.077229 TGCCATTTGTTCGAACACTTG 57.923 42.857 29.74 25.92 38.92 3.16
179 180 2.425312 TGCCATTTGTTCGAACACTTGT 59.575 40.909 29.74 13.32 38.92 3.16
180 181 3.042887 GCCATTTGTTCGAACACTTGTC 58.957 45.455 29.74 16.16 38.92 3.18
181 182 3.243068 GCCATTTGTTCGAACACTTGTCT 60.243 43.478 29.74 8.75 38.92 3.41
182 183 4.282068 CCATTTGTTCGAACACTTGTCTG 58.718 43.478 29.74 18.39 38.92 3.51
183 184 3.398954 TTTGTTCGAACACTTGTCTGC 57.601 42.857 29.74 0.00 38.92 4.26
184 185 0.927537 TGTTCGAACACTTGTCTGCG 59.072 50.000 26.53 0.00 33.17 5.18
185 186 0.928229 GTTCGAACACTTGTCTGCGT 59.072 50.000 23.12 0.00 0.00 5.24
186 187 0.927537 TTCGAACACTTGTCTGCGTG 59.072 50.000 0.00 0.00 37.18 5.34
187 188 0.101579 TCGAACACTTGTCTGCGTGA 59.898 50.000 0.00 0.00 35.23 4.35
188 189 1.139989 CGAACACTTGTCTGCGTGAT 58.860 50.000 0.00 0.00 35.23 3.06
189 190 1.136529 CGAACACTTGTCTGCGTGATG 60.137 52.381 0.00 0.00 35.23 3.07
190 191 1.867233 GAACACTTGTCTGCGTGATGT 59.133 47.619 0.00 0.00 35.23 3.06
191 192 1.502231 ACACTTGTCTGCGTGATGTC 58.498 50.000 0.00 0.00 35.23 3.06
192 193 0.792640 CACTTGTCTGCGTGATGTCC 59.207 55.000 0.00 0.00 33.04 4.02
193 194 0.667487 ACTTGTCTGCGTGATGTCCG 60.667 55.000 0.00 0.00 0.00 4.79
199 200 3.576356 GCGTGATGTCCGCCATGG 61.576 66.667 7.63 7.63 45.20 3.66
211 212 2.491152 CCATGGACGGCAATGTGC 59.509 61.111 5.56 0.00 44.08 4.57
220 221 3.372730 GCAATGTGCAGGGGCGAA 61.373 61.111 0.00 0.00 44.26 4.70
221 222 2.879907 CAATGTGCAGGGGCGAAG 59.120 61.111 0.00 0.00 45.35 3.79
222 223 2.361610 AATGTGCAGGGGCGAAGG 60.362 61.111 0.00 0.00 45.35 3.46
223 224 3.944250 AATGTGCAGGGGCGAAGGG 62.944 63.158 0.00 0.00 45.35 3.95
230 231 4.426313 GGGGCGAAGGGTGAAGGG 62.426 72.222 0.00 0.00 0.00 3.95
266 267 4.424711 TTGGCGATGGGGTGGAGC 62.425 66.667 0.00 0.00 0.00 4.70
282 283 4.814294 GCGGCGGAGTAGGTGGTG 62.814 72.222 9.78 0.00 0.00 4.17
287 288 1.736645 CGGAGTAGGTGGTGCAACG 60.737 63.158 0.00 0.00 38.12 4.10
310 312 3.829948 CAACGTTGGTATCTGACTACGT 58.170 45.455 20.71 0.00 44.98 3.57
314 316 3.730061 CGTTGGTATCTGACTACGTGGAC 60.730 52.174 5.70 0.00 33.94 4.02
316 318 3.628008 TGGTATCTGACTACGTGGACAT 58.372 45.455 5.70 0.00 0.00 3.06
328 330 3.340928 ACGTGGACATAAAAGTAAGGCC 58.659 45.455 0.00 0.00 0.00 5.19
329 331 3.244630 ACGTGGACATAAAAGTAAGGCCA 60.245 43.478 5.01 0.00 33.56 5.36
332 334 5.105917 CGTGGACATAAAAGTAAGGCCAAAT 60.106 40.000 5.01 0.00 37.85 2.32
334 336 6.013379 TGGACATAAAAGTAAGGCCAAATGA 58.987 36.000 5.01 0.00 33.02 2.57
337 339 6.386654 ACATAAAAGTAAGGCCAAATGAACG 58.613 36.000 5.01 0.00 0.00 3.95
340 342 2.711542 AGTAAGGCCAAATGAACGGAG 58.288 47.619 5.01 0.00 0.00 4.63
361 363 1.270785 TGACAAATGCAAGGCTCTCGA 60.271 47.619 0.00 0.00 0.00 4.04
362 364 1.129437 GACAAATGCAAGGCTCTCGAC 59.871 52.381 0.00 0.00 0.00 4.20
372 374 1.014564 GGCTCTCGACAGGGTTTTCG 61.015 60.000 0.00 0.00 36.55 3.46
375 377 1.269998 CTCTCGACAGGGTTTTCGACT 59.730 52.381 0.00 0.00 39.29 4.18
384 386 1.532437 GGGTTTTCGACTTTGGTACGG 59.468 52.381 0.00 0.00 0.00 4.02
390 392 0.881159 CGACTTTGGTACGGGCAACA 60.881 55.000 0.00 0.00 39.74 3.33
395 397 0.881159 TTGGTACGGGCAACAAGACG 60.881 55.000 0.00 0.00 39.74 4.18
404 406 1.009675 CAACAAGACGCCTGTGTGC 60.010 57.895 0.00 0.00 0.00 4.57
405 407 2.186826 AACAAGACGCCTGTGTGCC 61.187 57.895 0.00 0.00 0.00 5.01
435 437 1.609208 ATGGAGTGCACACAAACCTC 58.391 50.000 21.04 5.49 0.00 3.85
436 438 0.465460 TGGAGTGCACACAAACCTCC 60.465 55.000 21.04 15.36 41.69 4.30
437 439 0.465460 GGAGTGCACACAAACCTCCA 60.465 55.000 21.04 0.00 41.12 3.86
438 440 1.609208 GAGTGCACACAAACCTCCAT 58.391 50.000 21.04 0.00 0.00 3.41
439 441 1.956477 GAGTGCACACAAACCTCCATT 59.044 47.619 21.04 0.00 0.00 3.16
440 442 1.956477 AGTGCACACAAACCTCCATTC 59.044 47.619 21.04 0.00 0.00 2.67
441 443 1.680735 GTGCACACAAACCTCCATTCA 59.319 47.619 13.17 0.00 0.00 2.57
442 444 2.297033 GTGCACACAAACCTCCATTCAT 59.703 45.455 13.17 0.00 0.00 2.57
443 445 2.296752 TGCACACAAACCTCCATTCATG 59.703 45.455 0.00 0.00 0.00 3.07
444 446 2.927871 GCACACAAACCTCCATTCATGC 60.928 50.000 0.00 0.00 0.00 4.06
445 447 1.895131 ACACAAACCTCCATTCATGCC 59.105 47.619 0.00 0.00 0.00 4.40
446 448 1.205417 CACAAACCTCCATTCATGCCC 59.795 52.381 0.00 0.00 0.00 5.36
447 449 0.457035 CAAACCTCCATTCATGCCCG 59.543 55.000 0.00 0.00 0.00 6.13
448 450 0.039618 AAACCTCCATTCATGCCCGT 59.960 50.000 0.00 0.00 0.00 5.28
449 451 0.394352 AACCTCCATTCATGCCCGTC 60.394 55.000 0.00 0.00 0.00 4.79
450 452 1.274703 ACCTCCATTCATGCCCGTCT 61.275 55.000 0.00 0.00 0.00 4.18
451 453 0.107017 CCTCCATTCATGCCCGTCTT 60.107 55.000 0.00 0.00 0.00 3.01
452 454 1.140852 CCTCCATTCATGCCCGTCTTA 59.859 52.381 0.00 0.00 0.00 2.10
453 455 2.224621 CCTCCATTCATGCCCGTCTTAT 60.225 50.000 0.00 0.00 0.00 1.73
489 491 1.080298 GACCGGTCCATCGACGTTT 60.080 57.895 24.75 0.00 40.17 3.60
494 496 0.373716 GGTCCATCGACGTTTGATGC 59.626 55.000 20.32 11.32 41.48 3.91
495 497 0.025001 GTCCATCGACGTTTGATGCG 59.975 55.000 20.32 15.20 41.48 4.73
498 500 2.092291 ATCGACGTTTGATGCGCGT 61.092 52.632 8.43 0.00 41.81 6.01
506 508 0.383737 TTTGATGCGCGTCGTTTGAC 60.384 50.000 23.73 0.00 41.91 3.18
550 552 3.441295 TGCGTTTTGATGCAGGCA 58.559 50.000 0.00 0.00 35.90 4.75
552 554 0.317799 TGCGTTTTGATGCAGGCATT 59.682 45.000 8.34 0.00 36.70 3.56
554 556 1.352114 CGTTTTGATGCAGGCATTGG 58.648 50.000 8.34 0.00 36.70 3.16
557 559 2.228389 TTTGATGCAGGCATTGGGCG 62.228 55.000 8.34 0.00 46.16 6.13
565 567 0.323725 AGGCATTGGGCGTTGAGAAT 60.324 50.000 0.00 0.00 46.16 2.40
575 577 3.059166 GGCGTTGAGAATGTTTGCAAAT 58.941 40.909 16.21 0.00 0.00 2.32
576 578 3.494251 GGCGTTGAGAATGTTTGCAAATT 59.506 39.130 16.21 6.43 0.00 1.82
577 579 4.024977 GGCGTTGAGAATGTTTGCAAATTT 60.025 37.500 16.21 12.19 0.00 1.82
578 580 5.500825 GCGTTGAGAATGTTTGCAAATTTT 58.499 33.333 16.21 11.83 0.00 1.82
579 581 5.964751 GCGTTGAGAATGTTTGCAAATTTTT 59.035 32.000 16.21 9.31 0.00 1.94
623 626 5.140747 TGTTGTTGTTGGTTAAGTTTGCT 57.859 34.783 0.00 0.00 0.00 3.91
630 634 5.172205 TGTTGGTTAAGTTTGCTTTGGAAC 58.828 37.500 0.00 0.00 36.22 3.62
634 638 5.103687 GGTTAAGTTTGCTTTGGAACGAAA 58.896 37.500 0.00 0.00 36.22 3.46
635 639 5.751509 GGTTAAGTTTGCTTTGGAACGAAAT 59.248 36.000 0.00 0.00 36.22 2.17
648 652 5.897050 TGGAACGAAATTAAGCACAGTTTT 58.103 33.333 0.00 0.00 0.00 2.43
675 681 5.508489 CCAAGTACGACACTCTTCCAAGTAA 60.508 44.000 0.00 0.00 36.04 2.24
676 682 5.979288 AGTACGACACTCTTCCAAGTAAT 57.021 39.130 0.00 0.00 28.33 1.89
677 683 7.310664 CAAGTACGACACTCTTCCAAGTAATA 58.689 38.462 0.00 0.00 36.04 0.98
678 684 6.850555 AGTACGACACTCTTCCAAGTAATAC 58.149 40.000 0.00 0.00 28.33 1.89
679 685 5.979288 ACGACACTCTTCCAAGTAATACT 57.021 39.130 0.00 0.00 0.00 2.12
685 691 9.738832 GACACTCTTCCAAGTAATACTATCTTC 57.261 37.037 0.00 0.00 0.00 2.87
719 725 1.801178 CCTTCGAGCAGTTGGAAAGAC 59.199 52.381 0.00 0.00 0.00 3.01
761 767 1.377536 GCCAGATTTCTGAGCTCACC 58.622 55.000 13.74 0.00 46.59 4.02
822 1162 3.084579 CGAGCAATCACACGAGCC 58.915 61.111 0.00 0.00 0.00 4.70
823 1163 1.737735 CGAGCAATCACACGAGCCA 60.738 57.895 0.00 0.00 0.00 4.75
913 1276 3.752167 TCCCGTCTCCCTCCCTCC 61.752 72.222 0.00 0.00 0.00 4.30
1007 1370 0.179032 CCAAACCCCAAAAGCAACCC 60.179 55.000 0.00 0.00 0.00 4.11
1008 1371 0.543749 CAAACCCCAAAAGCAACCCA 59.456 50.000 0.00 0.00 0.00 4.51
1011 1374 0.618968 ACCCCAAAAGCAACCCACAA 60.619 50.000 0.00 0.00 0.00 3.33
1032 1395 6.636850 CACAAAATTCTCTCTAAACAAACCCG 59.363 38.462 0.00 0.00 0.00 5.28
1112 1489 2.928361 CTAAATAGTGCCGCCGCG 59.072 61.111 5.59 5.59 38.08 6.46
1309 1695 4.373116 TTCGTGTGCCCGCTCTCC 62.373 66.667 0.00 0.00 0.00 3.71
1435 1821 0.602106 CGGGCTCTGATGCGATGATT 60.602 55.000 0.00 0.00 0.00 2.57
1444 1830 2.609002 TGATGCGATGATTCCAAACTCG 59.391 45.455 0.00 0.00 0.00 4.18
1521 1907 2.563427 GCCGTCCAAAGAAGCTGC 59.437 61.111 0.00 0.00 0.00 5.25
1528 1914 2.034221 AAAGAAGCTGCCCGGGAC 59.966 61.111 29.31 16.95 0.00 4.46
1624 2010 2.174319 GGCGAGCTCGTCCAATTCC 61.174 63.158 34.46 22.10 42.22 3.01
1794 2201 1.945354 ATGGACGCGGACGAAGATGT 61.945 55.000 12.47 0.00 43.93 3.06
1798 2205 0.806868 ACGCGGACGAAGATGTAGAA 59.193 50.000 12.47 0.00 43.93 2.10
2164 2574 2.716017 GCTGGACCTCCTCACCTCG 61.716 68.421 0.00 0.00 36.82 4.63
2248 2658 0.884704 CCGTCAACCAGTCCAAGGTG 60.885 60.000 0.00 0.00 39.86 4.00
2287 2697 3.322466 AAGGCCCTCCTCACCGTG 61.322 66.667 0.00 0.00 43.40 4.94
2424 2834 1.758514 TGTCCGGCATCCTCCTCTC 60.759 63.158 0.00 0.00 0.00 3.20
2426 2836 3.610669 CCGGCATCCTCCTCTCCG 61.611 72.222 0.00 0.00 39.79 4.63
2795 3205 4.069232 CCGCCGAGTTCTGAGCCA 62.069 66.667 0.00 0.00 0.00 4.75
2800 3210 0.539051 CCGAGTTCTGAGCCAATCCT 59.461 55.000 0.00 0.00 0.00 3.24
2801 3211 1.065854 CCGAGTTCTGAGCCAATCCTT 60.066 52.381 0.00 0.00 0.00 3.36
2802 3212 2.275318 CGAGTTCTGAGCCAATCCTTC 58.725 52.381 0.00 0.00 0.00 3.46
2803 3213 2.637947 GAGTTCTGAGCCAATCCTTCC 58.362 52.381 0.00 0.00 0.00 3.46
2804 3214 1.988107 AGTTCTGAGCCAATCCTTCCA 59.012 47.619 0.00 0.00 0.00 3.53
2805 3215 2.579860 AGTTCTGAGCCAATCCTTCCAT 59.420 45.455 0.00 0.00 0.00 3.41
2806 3216 2.948315 GTTCTGAGCCAATCCTTCCATC 59.052 50.000 0.00 0.00 0.00 3.51
2807 3217 1.139654 TCTGAGCCAATCCTTCCATCG 59.860 52.381 0.00 0.00 0.00 3.84
2819 3229 3.140141 CCATCGCCGCCACCATTT 61.140 61.111 0.00 0.00 0.00 2.32
2820 3230 2.102749 CATCGCCGCCACCATTTG 59.897 61.111 0.00 0.00 0.00 2.32
2821 3231 2.361104 ATCGCCGCCACCATTTGT 60.361 55.556 0.00 0.00 0.00 2.83
2822 3232 1.078072 ATCGCCGCCACCATTTGTA 60.078 52.632 0.00 0.00 0.00 2.41
2823 3233 0.465460 ATCGCCGCCACCATTTGTAT 60.465 50.000 0.00 0.00 0.00 2.29
2824 3234 1.063972 CGCCGCCACCATTTGTATG 59.936 57.895 0.00 0.00 0.00 2.39
2825 3235 1.653094 CGCCGCCACCATTTGTATGT 61.653 55.000 0.00 0.00 0.00 2.29
2875 3286 1.904865 CATTGGTGCCACTGCCACT 60.905 57.895 0.00 0.00 36.33 4.00
2876 3287 1.904865 ATTGGTGCCACTGCCACTG 60.905 57.895 0.00 0.00 36.33 3.66
2939 3350 4.408993 TTGTCGATGAAAGTGCAATGAG 57.591 40.909 0.00 0.00 0.00 2.90
2966 3377 0.879765 AAATGTCGTCGTCCTCGAGT 59.120 50.000 12.31 0.00 46.96 4.18
2967 3378 0.168348 AATGTCGTCGTCCTCGAGTG 59.832 55.000 12.31 3.02 46.96 3.51
2968 3379 2.202324 GTCGTCGTCCTCGAGTGC 60.202 66.667 12.31 2.48 46.96 4.40
2998 3419 2.176546 CGTGCCATGGAGTTTGCG 59.823 61.111 18.40 5.81 0.00 4.85
3022 3443 4.406173 CTCGTCGGCTCGTGTGCT 62.406 66.667 0.00 0.00 0.00 4.40
3023 3444 4.700365 TCGTCGGCTCGTGTGCTG 62.700 66.667 0.00 0.00 40.46 4.41
3126 3569 1.736032 GCGGACATGAGTGACAGGTAC 60.736 57.143 0.00 0.00 43.68 3.34
3127 3570 1.819288 CGGACATGAGTGACAGGTACT 59.181 52.381 0.00 0.00 43.68 2.73
3128 3571 3.014623 CGGACATGAGTGACAGGTACTA 58.985 50.000 0.00 0.00 43.68 1.82
3152 3600 1.834188 ATTGTTTTAGGCAGGACCGG 58.166 50.000 0.00 0.00 46.52 5.28
3219 3671 0.820226 TTCTGCTCTCGATCCACTGG 59.180 55.000 0.00 0.00 0.00 4.00
3238 3690 1.599518 TTGCTTCGTTGGCCGATGT 60.600 52.632 12.17 0.00 46.75 3.06
3239 3691 0.320858 TTGCTTCGTTGGCCGATGTA 60.321 50.000 12.17 1.49 46.75 2.29
3240 3692 1.017177 TGCTTCGTTGGCCGATGTAC 61.017 55.000 12.17 3.85 46.75 2.90
3289 3746 2.884012 TGCGTTGGATCTTTGACAATGT 59.116 40.909 0.00 0.00 34.48 2.71
3305 3762 1.024271 ATGTATGTGTCGCATTGGCC 58.976 50.000 3.80 0.00 38.94 5.36
3321 3789 5.674318 GCATTGGCCATTTGTAAATTCTTGC 60.674 40.000 6.09 0.00 0.00 4.01
3370 3838 0.320421 TTCTCTACACCGCTTGCCAC 60.320 55.000 0.00 0.00 0.00 5.01
3420 3888 0.316522 CGACGGATCTGAGCATGGAT 59.683 55.000 9.00 0.00 0.00 3.41
3422 3890 2.804572 CGACGGATCTGAGCATGGATTT 60.805 50.000 9.00 0.00 0.00 2.17
3433 3901 4.403432 TGAGCATGGATTTCTCCCATTTTC 59.597 41.667 0.00 0.00 42.18 2.29
3438 3906 4.344104 TGGATTTCTCCCATTTTCCTGTC 58.656 43.478 0.00 0.00 41.29 3.51
3440 3908 1.821216 TTCTCCCATTTTCCTGTCGC 58.179 50.000 0.00 0.00 0.00 5.19
3441 3909 0.984230 TCTCCCATTTTCCTGTCGCT 59.016 50.000 0.00 0.00 0.00 4.93
3442 3910 1.066143 TCTCCCATTTTCCTGTCGCTC 60.066 52.381 0.00 0.00 0.00 5.03
3443 3911 0.391130 TCCCATTTTCCTGTCGCTCG 60.391 55.000 0.00 0.00 0.00 5.03
3444 3912 0.391130 CCCATTTTCCTGTCGCTCGA 60.391 55.000 0.00 0.00 0.00 4.04
3445 3913 0.721718 CCATTTTCCTGTCGCTCGAC 59.278 55.000 14.77 14.77 44.77 4.20
3446 3914 0.721718 CATTTTCCTGTCGCTCGACC 59.278 55.000 18.23 3.05 43.97 4.79
3447 3915 0.736325 ATTTTCCTGTCGCTCGACCG 60.736 55.000 18.23 12.47 43.97 4.79
3448 3916 1.798234 TTTTCCTGTCGCTCGACCGA 61.798 55.000 18.23 11.45 43.97 4.69
3451 3919 2.473760 CCTGTCGCTCGACCGATCT 61.474 63.158 18.23 0.00 43.97 2.75
3482 3950 3.274281 ACATGAACCCCTCCCATTTTT 57.726 42.857 0.00 0.00 0.00 1.94
3574 4053 4.753186 TGTCTCTCTACCTTTCCTTTCCT 58.247 43.478 0.00 0.00 0.00 3.36
3636 4120 3.074390 TGATTCCTCCCAGATGTTGTTGT 59.926 43.478 0.00 0.00 0.00 3.32
3653 4137 2.554462 GTTGTCCCTGCCTCTTCTTTTC 59.446 50.000 0.00 0.00 0.00 2.29
3665 4149 4.125703 CTCTTCTTTTCGAGATGGATGGG 58.874 47.826 0.00 0.00 33.49 4.00
3677 4161 2.683475 GATGGGGGTTGGAGGGTG 59.317 66.667 0.00 0.00 0.00 4.61
3702 4186 6.151817 GTGGAGACAAGGCTTTCTTAATTCAT 59.848 38.462 0.00 0.00 46.06 2.57
3762 4246 9.913310 TCAACATCCATTTGGTTATCTGTAATA 57.087 29.630 0.00 0.00 36.34 0.98
3797 4284 5.871524 TCATCATCGAGCTTTCTATATTGCC 59.128 40.000 0.00 0.00 0.00 4.52
3836 4326 0.473755 TTTGCAAGGCAGAGAGGTCA 59.526 50.000 0.00 0.00 40.61 4.02
3862 4352 0.911769 ACCCAATTCATGCTCGAGGA 59.088 50.000 15.58 12.84 0.00 3.71
3863 4353 1.134280 ACCCAATTCATGCTCGAGGAG 60.134 52.381 15.58 5.83 0.00 3.69
3865 4355 1.139654 CCAATTCATGCTCGAGGAGGA 59.860 52.381 17.62 17.62 33.93 3.71
3890 4380 0.250513 GGAGTCCAATCAAGTCCGCT 59.749 55.000 3.60 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.657074 TCCGGTGAATTTGTATACTAGATTTG 57.343 34.615 0.00 0.00 0.00 2.32
1 2 9.847224 ATTCCGGTGAATTTGTATACTAGATTT 57.153 29.630 0.00 0.00 38.00 2.17
2 3 9.847224 AATTCCGGTGAATTTGTATACTAGATT 57.153 29.630 0.00 2.03 46.57 2.40
4 5 9.754382 GTAATTCCGGTGAATTTGTATACTAGA 57.246 33.333 0.00 0.00 46.57 2.43
5 6 9.537192 TGTAATTCCGGTGAATTTGTATACTAG 57.463 33.333 0.00 0.00 46.57 2.57
6 7 9.887629 TTGTAATTCCGGTGAATTTGTATACTA 57.112 29.630 0.00 0.00 46.57 1.82
7 8 8.795842 TTGTAATTCCGGTGAATTTGTATACT 57.204 30.769 0.00 0.00 46.57 2.12
8 9 9.498307 CTTTGTAATTCCGGTGAATTTGTATAC 57.502 33.333 0.00 0.00 46.57 1.47
9 10 8.679100 CCTTTGTAATTCCGGTGAATTTGTATA 58.321 33.333 0.00 0.00 46.57 1.47
10 11 7.394923 TCCTTTGTAATTCCGGTGAATTTGTAT 59.605 33.333 0.00 0.00 46.57 2.29
11 12 6.715718 TCCTTTGTAATTCCGGTGAATTTGTA 59.284 34.615 0.00 0.00 46.57 2.41
12 13 5.536916 TCCTTTGTAATTCCGGTGAATTTGT 59.463 36.000 0.00 0.00 46.57 2.83
13 14 6.019779 TCCTTTGTAATTCCGGTGAATTTG 57.980 37.500 0.00 0.00 46.57 2.32
14 15 6.663523 AGATCCTTTGTAATTCCGGTGAATTT 59.336 34.615 0.00 0.00 46.57 1.82
16 17 5.755849 AGATCCTTTGTAATTCCGGTGAAT 58.244 37.500 0.00 0.00 43.08 2.57
17 18 5.174037 AGATCCTTTGTAATTCCGGTGAA 57.826 39.130 0.00 0.00 34.33 3.18
18 19 4.837093 AGATCCTTTGTAATTCCGGTGA 57.163 40.909 0.00 0.00 0.00 4.02
19 20 4.941263 TCAAGATCCTTTGTAATTCCGGTG 59.059 41.667 0.00 0.00 0.00 4.94
20 21 4.941873 GTCAAGATCCTTTGTAATTCCGGT 59.058 41.667 0.00 0.00 0.00 5.28
21 22 4.335594 GGTCAAGATCCTTTGTAATTCCGG 59.664 45.833 0.00 0.00 0.00 5.14
22 23 5.186198 AGGTCAAGATCCTTTGTAATTCCG 58.814 41.667 0.00 0.00 30.18 4.30
23 24 6.434340 ACAAGGTCAAGATCCTTTGTAATTCC 59.566 38.462 0.00 0.00 42.57 3.01
24 25 7.454260 ACAAGGTCAAGATCCTTTGTAATTC 57.546 36.000 0.00 0.00 42.57 2.17
25 26 6.149474 CGACAAGGTCAAGATCCTTTGTAATT 59.851 38.462 0.00 0.00 42.57 1.40
26 27 5.643777 CGACAAGGTCAAGATCCTTTGTAAT 59.356 40.000 0.00 0.00 42.57 1.89
27 28 4.994852 CGACAAGGTCAAGATCCTTTGTAA 59.005 41.667 0.00 0.00 42.57 2.41
28 29 4.282449 TCGACAAGGTCAAGATCCTTTGTA 59.718 41.667 0.00 0.00 42.57 2.41
29 30 3.071023 TCGACAAGGTCAAGATCCTTTGT 59.929 43.478 0.00 0.00 42.57 2.83
30 31 3.664107 TCGACAAGGTCAAGATCCTTTG 58.336 45.455 0.00 0.00 42.57 2.77
31 32 4.559862 ATCGACAAGGTCAAGATCCTTT 57.440 40.909 0.00 0.00 42.57 3.11
32 33 5.878406 ATATCGACAAGGTCAAGATCCTT 57.122 39.130 0.00 0.00 44.93 3.36
33 34 5.600484 AGAATATCGACAAGGTCAAGATCCT 59.400 40.000 0.00 0.00 36.81 3.24
34 35 5.694006 CAGAATATCGACAAGGTCAAGATCC 59.306 44.000 0.00 0.00 32.09 3.36
35 36 6.507900 TCAGAATATCGACAAGGTCAAGATC 58.492 40.000 0.00 0.00 32.09 2.75
36 37 6.322456 TCTCAGAATATCGACAAGGTCAAGAT 59.678 38.462 0.00 0.00 32.09 2.40
37 38 5.652452 TCTCAGAATATCGACAAGGTCAAGA 59.348 40.000 0.00 0.00 32.09 3.02
38 39 5.895928 TCTCAGAATATCGACAAGGTCAAG 58.104 41.667 0.00 0.00 32.09 3.02
39 40 5.914898 TCTCAGAATATCGACAAGGTCAA 57.085 39.130 0.00 0.00 32.09 3.18
40 41 5.594317 TGATCTCAGAATATCGACAAGGTCA 59.406 40.000 0.00 0.00 32.09 4.02
41 42 6.078202 TGATCTCAGAATATCGACAAGGTC 57.922 41.667 0.00 0.00 0.00 3.85
42 43 6.662865 ATGATCTCAGAATATCGACAAGGT 57.337 37.500 0.00 0.00 0.00 3.50
43 44 7.150640 TCAATGATCTCAGAATATCGACAAGG 58.849 38.462 0.00 0.00 0.00 3.61
44 45 8.486383 GTTCAATGATCTCAGAATATCGACAAG 58.514 37.037 0.00 0.00 0.00 3.16
45 46 7.168135 CGTTCAATGATCTCAGAATATCGACAA 59.832 37.037 0.00 0.00 0.00 3.18
46 47 6.638468 CGTTCAATGATCTCAGAATATCGACA 59.362 38.462 0.00 0.00 0.00 4.35
47 48 6.858478 TCGTTCAATGATCTCAGAATATCGAC 59.142 38.462 0.00 0.00 0.00 4.20
48 49 6.858478 GTCGTTCAATGATCTCAGAATATCGA 59.142 38.462 0.00 0.00 0.00 3.59
49 50 6.088749 GGTCGTTCAATGATCTCAGAATATCG 59.911 42.308 0.00 0.00 0.00 2.92
50 51 6.925718 TGGTCGTTCAATGATCTCAGAATATC 59.074 38.462 0.00 0.00 0.00 1.63
51 52 6.703607 GTGGTCGTTCAATGATCTCAGAATAT 59.296 38.462 0.00 0.00 0.00 1.28
52 53 6.042777 GTGGTCGTTCAATGATCTCAGAATA 58.957 40.000 0.00 0.00 0.00 1.75
53 54 4.872691 GTGGTCGTTCAATGATCTCAGAAT 59.127 41.667 0.00 0.00 0.00 2.40
54 55 4.021104 AGTGGTCGTTCAATGATCTCAGAA 60.021 41.667 0.00 0.00 0.00 3.02
55 56 3.511540 AGTGGTCGTTCAATGATCTCAGA 59.488 43.478 0.00 0.00 0.00 3.27
56 57 3.854666 AGTGGTCGTTCAATGATCTCAG 58.145 45.455 0.00 0.00 0.00 3.35
57 58 3.961480 AGTGGTCGTTCAATGATCTCA 57.039 42.857 0.00 0.00 0.00 3.27
58 59 4.800993 CAGTAGTGGTCGTTCAATGATCTC 59.199 45.833 0.00 0.00 0.00 2.75
59 60 4.220821 ACAGTAGTGGTCGTTCAATGATCT 59.779 41.667 1.92 0.00 0.00 2.75
60 61 4.495422 ACAGTAGTGGTCGTTCAATGATC 58.505 43.478 1.92 0.00 0.00 2.92
61 62 4.495422 GACAGTAGTGGTCGTTCAATGAT 58.505 43.478 1.92 0.00 0.00 2.45
62 63 3.909430 GACAGTAGTGGTCGTTCAATGA 58.091 45.455 1.92 0.00 0.00 2.57
71 72 1.154073 GTCGGCGACAGTAGTGGTC 60.154 63.158 33.07 2.90 32.09 4.02
72 73 1.248785 ATGTCGGCGACAGTAGTGGT 61.249 55.000 40.31 23.78 46.04 4.16
73 74 0.802222 CATGTCGGCGACAGTAGTGG 60.802 60.000 40.31 23.63 46.04 4.00
74 75 0.109272 ACATGTCGGCGACAGTAGTG 60.109 55.000 40.31 34.45 46.04 2.74
75 76 0.170561 GACATGTCGGCGACAGTAGT 59.829 55.000 40.31 35.48 46.04 2.73
76 77 0.170339 TGACATGTCGGCGACAGTAG 59.830 55.000 40.31 33.07 46.04 2.57
77 78 0.109458 GTGACATGTCGGCGACAGTA 60.109 55.000 40.31 25.68 46.04 2.74
78 79 1.372997 GTGACATGTCGGCGACAGT 60.373 57.895 40.31 35.00 46.04 3.55
79 80 1.080501 AGTGACATGTCGGCGACAG 60.081 57.895 40.31 32.62 46.04 3.51
80 81 1.372872 CAGTGACATGTCGGCGACA 60.373 57.895 40.35 40.35 46.90 4.35
81 82 1.344942 GACAGTGACATGTCGGCGAC 61.345 60.000 31.68 31.68 40.18 5.19
82 83 1.080772 GACAGTGACATGTCGGCGA 60.081 57.895 20.54 4.99 40.18 5.54
83 84 3.463505 GACAGTGACATGTCGGCG 58.536 61.111 20.54 13.02 40.18 6.46
87 88 2.030717 AGAGTGACGACAGTGACATGTC 60.031 50.000 19.27 19.27 45.01 3.06
88 89 1.957177 AGAGTGACGACAGTGACATGT 59.043 47.619 0.00 0.00 36.93 3.21
89 90 2.590073 GAGAGTGACGACAGTGACATG 58.410 52.381 0.00 0.00 36.93 3.21
90 91 1.542030 GGAGAGTGACGACAGTGACAT 59.458 52.381 0.00 0.00 36.93 3.06
91 92 0.952280 GGAGAGTGACGACAGTGACA 59.048 55.000 0.00 0.00 36.93 3.58
92 93 1.240256 AGGAGAGTGACGACAGTGAC 58.760 55.000 0.00 0.00 34.60 3.67
93 94 2.853235 TAGGAGAGTGACGACAGTGA 57.147 50.000 0.00 0.00 0.00 3.41
94 95 3.010420 TGATAGGAGAGTGACGACAGTG 58.990 50.000 0.00 0.00 0.00 3.66
95 96 3.055021 TCTGATAGGAGAGTGACGACAGT 60.055 47.826 0.00 0.00 0.00 3.55
96 97 3.536570 TCTGATAGGAGAGTGACGACAG 58.463 50.000 0.00 0.00 0.00 3.51
97 98 3.536570 CTCTGATAGGAGAGTGACGACA 58.463 50.000 0.00 0.00 35.64 4.35
105 106 4.036734 GTCAAGCTCACTCTGATAGGAGAG 59.963 50.000 0.00 0.00 44.50 3.20
106 107 3.951037 GTCAAGCTCACTCTGATAGGAGA 59.049 47.826 0.00 0.00 37.13 3.71
107 108 3.068024 GGTCAAGCTCACTCTGATAGGAG 59.932 52.174 0.00 0.00 39.09 3.69
108 109 3.027412 GGTCAAGCTCACTCTGATAGGA 58.973 50.000 0.00 0.00 0.00 2.94
109 110 3.030291 AGGTCAAGCTCACTCTGATAGG 58.970 50.000 0.00 0.00 0.00 2.57
110 111 4.081752 ACAAGGTCAAGCTCACTCTGATAG 60.082 45.833 0.00 0.00 0.00 2.08
111 112 3.834813 ACAAGGTCAAGCTCACTCTGATA 59.165 43.478 0.00 0.00 0.00 2.15
112 113 2.636893 ACAAGGTCAAGCTCACTCTGAT 59.363 45.455 0.00 0.00 0.00 2.90
113 114 2.036475 GACAAGGTCAAGCTCACTCTGA 59.964 50.000 0.00 0.00 32.09 3.27
114 115 2.411904 GACAAGGTCAAGCTCACTCTG 58.588 52.381 0.00 0.00 32.09 3.35
115 116 1.000283 CGACAAGGTCAAGCTCACTCT 60.000 52.381 0.00 0.00 32.09 3.24
116 117 1.000163 TCGACAAGGTCAAGCTCACTC 60.000 52.381 0.00 0.00 32.09 3.51
117 118 1.040646 TCGACAAGGTCAAGCTCACT 58.959 50.000 0.00 0.00 32.09 3.41
118 119 1.996191 GATCGACAAGGTCAAGCTCAC 59.004 52.381 0.00 0.00 32.09 3.51
119 120 1.402852 CGATCGACAAGGTCAAGCTCA 60.403 52.381 10.26 0.00 32.09 4.26
120 121 1.272781 CGATCGACAAGGTCAAGCTC 58.727 55.000 10.26 0.00 32.09 4.09
121 122 0.737715 GCGATCGACAAGGTCAAGCT 60.738 55.000 21.57 0.00 32.09 3.74
122 123 1.014044 TGCGATCGACAAGGTCAAGC 61.014 55.000 21.57 0.00 32.09 4.01
123 124 0.994995 CTGCGATCGACAAGGTCAAG 59.005 55.000 21.57 0.00 32.09 3.02
124 125 0.317160 ACTGCGATCGACAAGGTCAA 59.683 50.000 21.57 0.00 32.09 3.18
125 126 0.109272 GACTGCGATCGACAAGGTCA 60.109 55.000 21.57 4.11 32.09 4.02
126 127 1.134530 CGACTGCGATCGACAAGGTC 61.135 60.000 21.57 17.43 45.13 3.85
127 128 1.154016 CGACTGCGATCGACAAGGT 60.154 57.895 21.57 11.17 45.13 3.50
128 129 1.874019 CCGACTGCGATCGACAAGG 60.874 63.158 21.57 14.55 45.13 3.61
129 130 0.456142 TTCCGACTGCGATCGACAAG 60.456 55.000 21.57 14.77 45.13 3.16
130 131 0.038983 TTTCCGACTGCGATCGACAA 60.039 50.000 21.57 2.03 45.13 3.18
131 132 0.172578 ATTTCCGACTGCGATCGACA 59.827 50.000 21.57 15.18 45.13 4.35
132 133 1.278238 AATTTCCGACTGCGATCGAC 58.722 50.000 21.57 10.98 45.13 4.20
133 134 1.658596 CAAATTTCCGACTGCGATCGA 59.341 47.619 21.57 3.01 45.13 3.59
134 135 1.267532 CCAAATTTCCGACTGCGATCG 60.268 52.381 11.69 11.69 40.82 3.69
135 136 1.531883 GCCAAATTTCCGACTGCGATC 60.532 52.381 0.00 0.00 40.82 3.69
136 137 0.451783 GCCAAATTTCCGACTGCGAT 59.548 50.000 0.00 0.00 40.82 4.58
137 138 0.605319 AGCCAAATTTCCGACTGCGA 60.605 50.000 0.00 0.00 40.82 5.10
138 139 1.083489 TAGCCAAATTTCCGACTGCG 58.917 50.000 0.00 0.00 37.24 5.18
139 140 2.796032 GCATAGCCAAATTTCCGACTGC 60.796 50.000 0.00 0.00 0.00 4.40
140 141 3.070429 GCATAGCCAAATTTCCGACTG 57.930 47.619 0.00 0.00 0.00 3.51
153 154 2.163412 TGTTCGAACAAATGGCATAGCC 59.837 45.455 27.94 0.00 42.01 3.93
154 155 3.119849 AGTGTTCGAACAAATGGCATAGC 60.120 43.478 31.20 15.13 41.21 2.97
155 156 4.685169 AGTGTTCGAACAAATGGCATAG 57.315 40.909 31.20 0.00 41.21 2.23
156 157 4.277174 ACAAGTGTTCGAACAAATGGCATA 59.723 37.500 31.54 10.99 41.21 3.14
157 158 3.068024 ACAAGTGTTCGAACAAATGGCAT 59.932 39.130 31.54 18.15 41.21 4.40
158 159 2.425312 ACAAGTGTTCGAACAAATGGCA 59.575 40.909 31.54 12.23 41.21 4.92
159 160 3.042887 GACAAGTGTTCGAACAAATGGC 58.957 45.455 31.54 28.86 41.21 4.40
160 161 4.282068 CAGACAAGTGTTCGAACAAATGG 58.718 43.478 31.54 24.03 41.21 3.16
161 162 3.725740 GCAGACAAGTGTTCGAACAAATG 59.274 43.478 31.20 29.87 41.21 2.32
162 163 3.546020 CGCAGACAAGTGTTCGAACAAAT 60.546 43.478 31.20 20.22 41.21 2.32
163 164 2.222931 CGCAGACAAGTGTTCGAACAAA 60.223 45.455 31.20 8.49 41.21 2.83
164 165 1.326245 CGCAGACAAGTGTTCGAACAA 59.674 47.619 31.20 13.79 41.21 2.83
165 166 0.927537 CGCAGACAAGTGTTCGAACA 59.072 50.000 26.53 26.53 36.38 3.18
166 167 0.928229 ACGCAGACAAGTGTTCGAAC 59.072 50.000 21.42 21.42 0.00 3.95
167 168 0.927537 CACGCAGACAAGTGTTCGAA 59.072 50.000 0.00 0.00 33.97 3.71
168 169 0.101579 TCACGCAGACAAGTGTTCGA 59.898 50.000 0.00 0.00 39.25 3.71
169 170 1.136529 CATCACGCAGACAAGTGTTCG 60.137 52.381 0.00 0.00 39.25 3.95
170 171 1.867233 ACATCACGCAGACAAGTGTTC 59.133 47.619 0.00 0.00 39.25 3.18
171 172 1.867233 GACATCACGCAGACAAGTGTT 59.133 47.619 0.00 0.00 39.25 3.32
172 173 1.502231 GACATCACGCAGACAAGTGT 58.498 50.000 0.00 0.00 39.25 3.55
173 174 0.792640 GGACATCACGCAGACAAGTG 59.207 55.000 0.00 0.00 39.55 3.16
174 175 0.667487 CGGACATCACGCAGACAAGT 60.667 55.000 0.00 0.00 0.00 3.16
175 176 2.073307 CGGACATCACGCAGACAAG 58.927 57.895 0.00 0.00 0.00 3.16
176 177 4.260194 CGGACATCACGCAGACAA 57.740 55.556 0.00 0.00 0.00 3.18
183 184 2.186644 TCCATGGCGGACATCACG 59.813 61.111 6.96 0.00 39.64 4.35
194 195 2.274232 CTGCACATTGCCGTCCATGG 62.274 60.000 4.97 4.97 44.23 3.66
195 196 1.138036 CTGCACATTGCCGTCCATG 59.862 57.895 0.00 0.00 44.23 3.66
196 197 2.048023 CCTGCACATTGCCGTCCAT 61.048 57.895 0.00 0.00 44.23 3.41
197 198 2.672651 CCTGCACATTGCCGTCCA 60.673 61.111 0.00 0.00 44.23 4.02
198 199 3.443045 CCCTGCACATTGCCGTCC 61.443 66.667 0.00 0.00 44.23 4.79
199 200 3.443045 CCCCTGCACATTGCCGTC 61.443 66.667 0.00 0.00 44.23 4.79
203 204 3.346631 CTTCGCCCCTGCACATTGC 62.347 63.158 0.00 0.00 45.29 3.56
204 205 2.703798 CCTTCGCCCCTGCACATTG 61.704 63.158 0.00 0.00 37.32 2.82
205 206 2.361610 CCTTCGCCCCTGCACATT 60.362 61.111 0.00 0.00 37.32 2.71
206 207 4.431131 CCCTTCGCCCCTGCACAT 62.431 66.667 0.00 0.00 37.32 3.21
210 211 4.344865 TTCACCCTTCGCCCCTGC 62.345 66.667 0.00 0.00 0.00 4.85
211 212 2.045926 CTTCACCCTTCGCCCCTG 60.046 66.667 0.00 0.00 0.00 4.45
212 213 3.330720 CCTTCACCCTTCGCCCCT 61.331 66.667 0.00 0.00 0.00 4.79
213 214 4.426313 CCCTTCACCCTTCGCCCC 62.426 72.222 0.00 0.00 0.00 5.80
214 215 3.327404 TCCCTTCACCCTTCGCCC 61.327 66.667 0.00 0.00 0.00 6.13
215 216 2.269241 CTCCCTTCACCCTTCGCC 59.731 66.667 0.00 0.00 0.00 5.54
216 217 2.269241 CCTCCCTTCACCCTTCGC 59.731 66.667 0.00 0.00 0.00 4.70
217 218 1.915078 ATGCCTCCCTTCACCCTTCG 61.915 60.000 0.00 0.00 0.00 3.79
218 219 1.141858 CTATGCCTCCCTTCACCCTTC 59.858 57.143 0.00 0.00 0.00 3.46
219 220 1.216990 CTATGCCTCCCTTCACCCTT 58.783 55.000 0.00 0.00 0.00 3.95
220 221 0.695803 CCTATGCCTCCCTTCACCCT 60.696 60.000 0.00 0.00 0.00 4.34
221 222 1.839894 CCTATGCCTCCCTTCACCC 59.160 63.158 0.00 0.00 0.00 4.61
222 223 1.149401 GCCTATGCCTCCCTTCACC 59.851 63.158 0.00 0.00 0.00 4.02
223 224 0.255890 TTGCCTATGCCTCCCTTCAC 59.744 55.000 0.00 0.00 36.33 3.18
224 225 0.548031 CTTGCCTATGCCTCCCTTCA 59.452 55.000 0.00 0.00 36.33 3.02
230 231 2.592861 CCGGCTTGCCTATGCCTC 60.593 66.667 10.12 0.00 43.16 4.70
266 267 4.814294 GCACCACCTACTCCGCCG 62.814 72.222 0.00 0.00 0.00 6.46
270 271 1.375523 CCGTTGCACCACCTACTCC 60.376 63.158 0.00 0.00 0.00 3.85
271 272 2.033194 GCCGTTGCACCACCTACTC 61.033 63.158 0.00 0.00 37.47 2.59
287 288 2.094762 AGTCAGATACCAACGTTGCC 57.905 50.000 22.93 10.80 0.00 4.52
292 294 2.421073 TCCACGTAGTCAGATACCAACG 59.579 50.000 0.00 0.00 41.61 4.10
296 298 5.762825 TTATGTCCACGTAGTCAGATACC 57.237 43.478 0.00 0.00 41.61 2.73
300 302 5.717078 ACTTTTATGTCCACGTAGTCAGA 57.283 39.130 0.00 0.00 41.61 3.27
302 304 6.392354 CCTTACTTTTATGTCCACGTAGTCA 58.608 40.000 0.00 0.00 41.61 3.41
310 312 6.013379 TCATTTGGCCTTACTTTTATGTCCA 58.987 36.000 3.32 0.00 0.00 4.02
314 316 5.804979 CCGTTCATTTGGCCTTACTTTTATG 59.195 40.000 3.32 0.00 0.00 1.90
316 318 5.071370 TCCGTTCATTTGGCCTTACTTTTA 58.929 37.500 3.32 0.00 0.00 1.52
328 330 3.670055 GCATTTGTCACTCCGTTCATTTG 59.330 43.478 0.00 0.00 0.00 2.32
329 331 3.317711 TGCATTTGTCACTCCGTTCATTT 59.682 39.130 0.00 0.00 0.00 2.32
332 334 1.960417 TGCATTTGTCACTCCGTTCA 58.040 45.000 0.00 0.00 0.00 3.18
334 336 1.608590 CCTTGCATTTGTCACTCCGTT 59.391 47.619 0.00 0.00 0.00 4.44
337 339 1.200948 GAGCCTTGCATTTGTCACTCC 59.799 52.381 0.00 0.00 0.00 3.85
340 342 1.135859 CGAGAGCCTTGCATTTGTCAC 60.136 52.381 0.00 0.00 0.00 3.67
361 363 2.430248 ACCAAAGTCGAAAACCCTGT 57.570 45.000 0.00 0.00 0.00 4.00
362 364 2.222445 CGTACCAAAGTCGAAAACCCTG 59.778 50.000 0.00 0.00 0.00 4.45
372 374 1.265905 CTTGTTGCCCGTACCAAAGTC 59.734 52.381 0.00 0.00 0.00 3.01
375 377 1.310904 GTCTTGTTGCCCGTACCAAA 58.689 50.000 0.00 0.00 0.00 3.28
419 421 1.609208 ATGGAGGTTTGTGTGCACTC 58.391 50.000 19.41 15.51 0.00 3.51
435 437 1.881973 CCATAAGACGGGCATGAATGG 59.118 52.381 0.00 0.00 0.00 3.16
436 438 1.881973 CCCATAAGACGGGCATGAATG 59.118 52.381 0.00 0.00 36.72 2.67
437 439 1.774254 TCCCATAAGACGGGCATGAAT 59.226 47.619 0.00 0.00 44.11 2.57
438 440 1.140852 CTCCCATAAGACGGGCATGAA 59.859 52.381 0.00 0.00 44.11 2.57
439 441 0.758734 CTCCCATAAGACGGGCATGA 59.241 55.000 0.00 0.00 44.11 3.07
440 442 0.469917 ACTCCCATAAGACGGGCATG 59.530 55.000 0.00 0.00 44.11 4.06
441 443 1.213296 AACTCCCATAAGACGGGCAT 58.787 50.000 0.00 0.00 44.11 4.40
442 444 0.988832 AAACTCCCATAAGACGGGCA 59.011 50.000 0.00 0.00 44.11 5.36
443 445 1.379527 CAAACTCCCATAAGACGGGC 58.620 55.000 0.00 0.00 44.11 6.13
444 446 1.557832 TCCAAACTCCCATAAGACGGG 59.442 52.381 0.00 0.00 46.03 5.28
445 447 2.629051 GTCCAAACTCCCATAAGACGG 58.371 52.381 0.00 0.00 0.00 4.79
446 448 2.268298 CGTCCAAACTCCCATAAGACG 58.732 52.381 0.00 0.00 39.51 4.18
447 449 3.000727 CACGTCCAAACTCCCATAAGAC 58.999 50.000 0.00 0.00 0.00 3.01
448 450 2.614481 GCACGTCCAAACTCCCATAAGA 60.614 50.000 0.00 0.00 0.00 2.10
449 451 1.737793 GCACGTCCAAACTCCCATAAG 59.262 52.381 0.00 0.00 0.00 1.73
450 452 1.816074 GCACGTCCAAACTCCCATAA 58.184 50.000 0.00 0.00 0.00 1.90
451 453 0.390603 CGCACGTCCAAACTCCCATA 60.391 55.000 0.00 0.00 0.00 2.74
452 454 1.671054 CGCACGTCCAAACTCCCAT 60.671 57.895 0.00 0.00 0.00 4.00
453 455 2.280524 CGCACGTCCAAACTCCCA 60.281 61.111 0.00 0.00 0.00 4.37
482 484 2.275202 GACGCGCATCAAACGTCG 60.275 61.111 5.73 0.00 45.52 5.12
489 491 2.663478 GGTCAAACGACGCGCATCA 61.663 57.895 5.73 0.00 33.96 3.07
494 496 3.759828 GACCGGTCAAACGACGCG 61.760 66.667 29.75 3.53 33.96 6.01
495 497 3.408851 GGACCGGTCAAACGACGC 61.409 66.667 34.40 12.03 33.96 5.19
498 500 0.601576 CACATGGACCGGTCAAACGA 60.602 55.000 34.40 13.67 35.47 3.85
525 527 1.643810 GCATCAAAACGCAGCTAAACG 59.356 47.619 1.80 1.80 0.00 3.60
550 552 2.610232 GCAAACATTCTCAACGCCCAAT 60.610 45.455 0.00 0.00 0.00 3.16
552 554 0.313672 GCAAACATTCTCAACGCCCA 59.686 50.000 0.00 0.00 0.00 5.36
554 556 2.132740 TTGCAAACATTCTCAACGCC 57.867 45.000 0.00 0.00 0.00 5.68
598 600 6.483640 AGCAAACTTAACCAACAACAACAAAA 59.516 30.769 0.00 0.00 0.00 2.44
623 626 5.508200 ACTGTGCTTAATTTCGTTCCAAA 57.492 34.783 0.00 0.00 0.00 3.28
630 634 5.277825 TGGTCAAAACTGTGCTTAATTTCG 58.722 37.500 0.00 0.00 0.00 3.46
634 638 5.852282 ACTTGGTCAAAACTGTGCTTAAT 57.148 34.783 0.00 0.00 0.00 1.40
635 639 5.220700 CGTACTTGGTCAAAACTGTGCTTAA 60.221 40.000 0.00 0.00 0.00 1.85
648 652 2.295349 GGAAGAGTGTCGTACTTGGTCA 59.705 50.000 0.00 0.00 40.53 4.02
675 681 6.817140 GGAAGTCAAAACACCGAAGATAGTAT 59.183 38.462 0.00 0.00 0.00 2.12
676 682 6.014840 AGGAAGTCAAAACACCGAAGATAGTA 60.015 38.462 0.00 0.00 32.02 1.82
677 683 4.995487 GGAAGTCAAAACACCGAAGATAGT 59.005 41.667 0.00 0.00 0.00 2.12
678 684 5.238583 AGGAAGTCAAAACACCGAAGATAG 58.761 41.667 0.00 0.00 32.02 2.08
679 685 5.223449 AGGAAGTCAAAACACCGAAGATA 57.777 39.130 0.00 0.00 32.02 1.98
685 691 2.206750 TCGAAGGAAGTCAAAACACCG 58.793 47.619 0.00 0.00 32.02 4.94
743 749 1.741732 CGGGTGAGCTCAGAAATCTGG 60.742 57.143 18.89 3.14 43.91 3.86
761 767 0.927083 CGTCCTCGTATACGTTGCGG 60.927 60.000 23.67 18.42 40.80 5.69
810 824 0.396435 TTGGAGTGGCTCGTGTGATT 59.604 50.000 0.00 0.00 0.00 2.57
812 826 0.037326 GATTGGAGTGGCTCGTGTGA 60.037 55.000 0.00 0.00 0.00 3.58
822 1162 4.214383 CGCGCGCTGATTGGAGTG 62.214 66.667 30.48 5.07 0.00 3.51
909 1272 1.150536 CGGGAGAGAGAGAGGGAGG 59.849 68.421 0.00 0.00 0.00 4.30
913 1276 2.904866 CGCCGGGAGAGAGAGAGG 60.905 72.222 2.18 0.00 0.00 3.69
1007 1370 6.636850 CGGGTTTGTTTAGAGAGAATTTTGTG 59.363 38.462 0.00 0.00 0.00 3.33
1008 1371 6.238925 CCGGGTTTGTTTAGAGAGAATTTTGT 60.239 38.462 0.00 0.00 0.00 2.83
1011 1374 4.765339 CCCGGGTTTGTTTAGAGAGAATTT 59.235 41.667 14.18 0.00 0.00 1.82
1384 1770 0.391793 GGGGCAAGAAGGAGAGTTCG 60.392 60.000 0.00 0.00 0.00 3.95
1387 1773 3.827752 GGGGGCAAGAAGGAGAGT 58.172 61.111 0.00 0.00 0.00 3.24
1420 1806 3.875727 AGTTTGGAATCATCGCATCAGAG 59.124 43.478 0.00 0.00 0.00 3.35
1435 1821 1.374947 CTTGAGGGCCGAGTTTGGA 59.625 57.895 0.00 0.00 0.00 3.53
1624 2010 2.522193 GCCGGGGAGGAGTAGGAG 60.522 72.222 2.18 0.00 45.00 3.69
1665 2051 2.049475 GATCTCCGAGGACGACGTGG 62.049 65.000 4.58 0.00 42.66 4.94
1708 2094 0.671781 CCTCCTTGACTGGCTTCACG 60.672 60.000 0.00 0.00 0.00 4.35
1710 2096 0.397941 CACCTCCTTGACTGGCTTCA 59.602 55.000 0.00 0.00 0.00 3.02
1794 2201 3.702048 AAGCGGCCGCCACTTCTA 61.702 61.111 44.47 0.00 43.17 2.10
2404 2814 3.432051 GAGGAGGATGCCGGACACG 62.432 68.421 5.05 0.00 40.55 4.49
2473 2883 4.569023 TAGATCGCCGCCACGCAG 62.569 66.667 0.00 0.00 0.00 5.18
2795 3205 2.203209 GGCGGCGATGGAAGGATT 60.203 61.111 12.98 0.00 0.00 3.01
2800 3210 3.636929 AATGGTGGCGGCGATGGAA 62.637 57.895 12.98 0.00 0.00 3.53
2801 3211 3.636929 AAATGGTGGCGGCGATGGA 62.637 57.895 12.98 0.00 0.00 3.41
2802 3212 3.140141 AAATGGTGGCGGCGATGG 61.140 61.111 12.98 0.00 0.00 3.51
2803 3213 1.372838 TACAAATGGTGGCGGCGATG 61.373 55.000 12.98 0.00 0.00 3.84
2804 3214 0.465460 ATACAAATGGTGGCGGCGAT 60.465 50.000 12.98 0.00 0.00 4.58
2805 3215 1.078072 ATACAAATGGTGGCGGCGA 60.078 52.632 12.98 0.00 0.00 5.54
2806 3216 1.063972 CATACAAATGGTGGCGGCG 59.936 57.895 0.51 0.51 0.00 6.46
2807 3217 1.384525 TACATACAAATGGTGGCGGC 58.615 50.000 0.00 0.00 37.43 6.53
2875 3286 0.465705 GGATTCATCCTCTCGTGGCA 59.534 55.000 0.00 0.00 43.73 4.92
2876 3287 0.250081 GGGATTCATCCTCTCGTGGC 60.250 60.000 5.80 0.00 46.35 5.01
2877 3288 0.394565 GGGGATTCATCCTCTCGTGG 59.605 60.000 5.80 0.00 44.34 4.94
2878 3289 3.997672 GGGGATTCATCCTCTCGTG 57.002 57.895 5.80 0.00 44.34 4.35
2939 3350 2.560896 GACGACGACATTTGAACAAGC 58.439 47.619 0.00 0.00 0.00 4.01
2966 3377 3.763356 ACGAGCTCGGAGCATGCA 61.763 61.111 36.93 0.00 45.56 3.96
2967 3378 3.260483 CACGAGCTCGGAGCATGC 61.260 66.667 36.93 10.51 45.56 4.06
2968 3379 3.260483 GCACGAGCTCGGAGCATG 61.260 66.667 35.44 27.06 45.56 4.06
3022 3443 2.342279 CTCCTCGTTTGTCCGGCA 59.658 61.111 0.00 0.00 0.00 5.69
3023 3444 3.119096 GCTCCTCGTTTGTCCGGC 61.119 66.667 0.00 0.00 0.00 6.13
3024 3445 1.738099 CAGCTCCTCGTTTGTCCGG 60.738 63.158 0.00 0.00 0.00 5.14
3126 3569 7.119262 CCGGTCCTGCCTAAAACAATAATATAG 59.881 40.741 0.00 0.00 34.25 1.31
3127 3570 6.938030 CCGGTCCTGCCTAAAACAATAATATA 59.062 38.462 0.00 0.00 34.25 0.86
3128 3571 5.768164 CCGGTCCTGCCTAAAACAATAATAT 59.232 40.000 0.00 0.00 34.25 1.28
3238 3690 1.760613 GTGGCCTACACCAGCATAGTA 59.239 52.381 3.32 0.00 44.49 1.82
3239 3691 0.541863 GTGGCCTACACCAGCATAGT 59.458 55.000 3.32 0.00 44.49 2.12
3240 3692 3.386543 GTGGCCTACACCAGCATAG 57.613 57.895 3.32 0.00 44.49 2.23
3289 3746 1.761449 AATGGCCAATGCGACACATA 58.239 45.000 10.96 0.00 38.34 2.29
3305 3762 4.737054 AGGCGAGCAAGAATTTACAAATG 58.263 39.130 0.00 0.00 0.00 2.32
3321 3789 1.471119 TTGGTCCTACTGTAGGCGAG 58.529 55.000 25.78 5.83 45.82 5.03
3370 3838 1.026718 GGATCGAAACCACTGCCCAG 61.027 60.000 7.06 0.00 0.00 4.45
3420 3888 2.159382 GCGACAGGAAAATGGGAGAAA 58.841 47.619 0.00 0.00 0.00 2.52
3422 3890 0.984230 AGCGACAGGAAAATGGGAGA 59.016 50.000 0.00 0.00 0.00 3.71
3433 3901 1.158484 TAGATCGGTCGAGCGACAGG 61.158 60.000 38.29 10.97 46.20 4.00
3438 3906 2.248724 CGGTAGATCGGTCGAGCG 59.751 66.667 29.80 29.80 42.66 5.03
3448 3916 4.202264 GGGTTCATGTTCAGATCGGTAGAT 60.202 45.833 0.00 0.00 40.38 1.98
3451 3919 2.169769 GGGGTTCATGTTCAGATCGGTA 59.830 50.000 0.00 0.00 0.00 4.02
3482 3950 3.500680 GTCACACCTCTCGCCATTTTAAA 59.499 43.478 0.00 0.00 0.00 1.52
3483 3951 3.071479 GTCACACCTCTCGCCATTTTAA 58.929 45.455 0.00 0.00 0.00 1.52
3484 3952 2.301870 AGTCACACCTCTCGCCATTTTA 59.698 45.455 0.00 0.00 0.00 1.52
3498 3966 0.039074 CCTCCGTCAGTCAGTCACAC 60.039 60.000 0.00 0.00 0.00 3.82
3574 4053 3.006728 CCACGGGAGGCCCTACAA 61.007 66.667 0.00 0.00 42.67 2.41
3636 4120 1.276421 CTCGAAAAGAAGAGGCAGGGA 59.724 52.381 0.00 0.00 0.00 4.20
3653 4137 1.149174 CCAACCCCCATCCATCTCG 59.851 63.158 0.00 0.00 0.00 4.04
3665 4149 1.846124 TCTCCACACCCTCCAACCC 60.846 63.158 0.00 0.00 0.00 4.11
3677 4161 5.473504 TGAATTAAGAAAGCCTTGTCTCCAC 59.526 40.000 0.00 0.00 36.34 4.02
3762 4246 8.563123 AAAGCTCGATGATGATGATGATAAAT 57.437 30.769 0.00 0.00 0.00 1.40
3764 4248 7.384477 AGAAAGCTCGATGATGATGATGATAA 58.616 34.615 0.00 0.00 0.00 1.75
3784 4271 6.713762 TGTTTCCATGGGCAATATAGAAAG 57.286 37.500 13.02 0.00 0.00 2.62
3811 4298 1.614903 TCTCTGCCTTGCAAAACATGG 59.385 47.619 0.00 0.00 44.63 3.66
3855 4345 1.144093 ACTCCACCTATCCTCCTCGAG 59.856 57.143 5.13 5.13 0.00 4.04
3862 4352 3.421394 TGATTGGACTCCACCTATCCT 57.579 47.619 0.00 0.00 39.91 3.24
3863 4353 3.456277 ACTTGATTGGACTCCACCTATCC 59.544 47.826 0.00 0.00 39.91 2.59
3865 4355 3.456277 GGACTTGATTGGACTCCACCTAT 59.544 47.826 0.00 0.00 30.78 2.57
3890 4380 7.796054 TCCAATTCCTTTTTCATTGTTTGGTA 58.204 30.769 0.00 0.00 34.22 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.