Multiple sequence alignment - TraesCS5A01G200600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G200600 chr5A 100.000 3423 0 0 1 3423 406534602 406531180 0.000000e+00 6322.0
1 TraesCS5A01G200600 chr5A 83.333 252 36 4 416 661 661212788 661212537 9.560000e-56 228.0
2 TraesCS5A01G200600 chr5A 79.365 252 46 4 416 661 237553747 237553496 4.540000e-39 172.0
3 TraesCS5A01G200600 chr5D 91.333 1350 46 26 2099 3423 312446649 312445346 0.000000e+00 1779.0
4 TraesCS5A01G200600 chr5D 88.342 995 61 26 1653 2629 312447805 312446848 0.000000e+00 1144.0
5 TraesCS5A01G200600 chr5D 91.317 714 26 6 767 1457 312448642 312447942 0.000000e+00 942.0
6 TraesCS5A01G200600 chr5D 84.558 667 69 16 1 661 312450149 312449511 6.230000e-177 630.0
7 TraesCS5A01G200600 chr5D 73.750 240 53 9 416 647 301627274 301627037 6.090000e-13 86.1
8 TraesCS5A01G200600 chr5D 87.273 55 6 1 222 276 456063609 456063662 1.030000e-05 62.1
9 TraesCS5A01G200600 chr5B 88.977 753 40 14 2692 3423 358888536 358887806 0.000000e+00 891.0
10 TraesCS5A01G200600 chr5B 93.535 495 15 8 782 1270 358890524 358890041 0.000000e+00 721.0
11 TraesCS5A01G200600 chr5B 89.558 498 27 12 2142 2625 358889146 358888660 2.920000e-170 608.0
12 TraesCS5A01G200600 chr5B 88.251 366 20 6 1266 1630 358890012 358889669 1.900000e-112 416.0
13 TraesCS5A01G200600 chr5B 82.149 549 35 21 1643 2157 358889684 358889165 2.460000e-111 412.0
14 TraesCS5A01G200600 chr5B 90.604 298 17 6 1 296 358891450 358891162 5.360000e-103 385.0
15 TraesCS5A01G200600 chr5B 83.399 253 35 6 416 661 547536408 547536156 9.560000e-56 228.0
16 TraesCS5A01G200600 chr5B 88.971 136 10 5 415 545 598979912 598979777 2.730000e-36 163.0
17 TraesCS5A01G200600 chr5B 100.000 32 0 0 714 745 358890527 358890496 3.690000e-05 60.2
18 TraesCS5A01G200600 chr3B 84.190 253 33 6 416 661 519435691 519435943 4.410000e-59 239.0
19 TraesCS5A01G200600 chr3B 83.794 253 34 6 416 661 607486379 607486631 2.050000e-57 233.0
20 TraesCS5A01G200600 chr4B 84.127 252 32 7 416 661 670050297 670050048 1.590000e-58 237.0
21 TraesCS5A01G200600 chr4D 83.794 253 34 6 416 661 414061870 414061618 2.050000e-57 233.0
22 TraesCS5A01G200600 chr4D 88.462 52 6 0 227 278 20114854 20114905 2.850000e-06 63.9
23 TraesCS5A01G200600 chr1A 83.203 256 37 5 412 661 31256173 31256428 2.660000e-56 230.0
24 TraesCS5A01G200600 chr1A 83.333 66 8 2 227 290 80190745 80190809 1.330000e-04 58.4
25 TraesCS5A01G200600 chr1B 84.167 240 32 5 416 649 567111686 567111925 9.560000e-56 228.0
26 TraesCS5A01G200600 chr1B 83.333 66 8 2 227 290 138037400 138037464 1.330000e-04 58.4
27 TraesCS5A01G200600 chr2D 82.540 252 38 5 416 661 106637173 106636922 2.070000e-52 217.0
28 TraesCS5A01G200600 chr2D 87.273 55 6 1 222 276 74975905 74975958 1.030000e-05 62.1
29 TraesCS5A01G200600 chr2A 84.404 109 9 6 416 517 492601830 492601723 2.170000e-17 100.0
30 TraesCS5A01G200600 chr7D 90.385 52 2 3 227 276 190083218 190083268 7.930000e-07 65.8
31 TraesCS5A01G200600 chr4A 90.000 50 5 0 227 276 662286503 662286454 7.930000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G200600 chr5A 406531180 406534602 3422 True 6322.000000 6322 100.000000 1 3423 1 chr5A.!!$R2 3422
1 TraesCS5A01G200600 chr5D 312445346 312450149 4803 True 1123.750000 1779 88.887500 1 3423 4 chr5D.!!$R2 3422
2 TraesCS5A01G200600 chr5B 358887806 358891450 3644 True 499.028571 891 90.439143 1 3423 7 chr5B.!!$R3 3422

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
986 1934 0.1078 GTAAAACCCCGGAGAGGAGC 60.108 60.0 0.73 0.0 45.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2705 4578 0.165944 CCTGCCGCGTTAGAAACTTG 59.834 55.0 4.92 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.797039 TCTGCTATTGGAGGATGTTTCG 58.203 45.455 0.00 0.00 32.15 3.46
35 36 6.998074 TGCTATTGGAGGATGTTTCGATAAAT 59.002 34.615 0.00 0.00 0.00 1.40
140 143 2.697654 GTCTGAGCAGCAATGAGAGTT 58.302 47.619 0.00 0.00 0.00 3.01
145 148 5.764686 TCTGAGCAGCAATGAGAGTTAAAAA 59.235 36.000 0.00 0.00 0.00 1.94
147 150 5.048504 TGAGCAGCAATGAGAGTTAAAAAGG 60.049 40.000 0.00 0.00 0.00 3.11
148 151 3.922850 GCAGCAATGAGAGTTAAAAAGGC 59.077 43.478 0.00 0.00 0.00 4.35
149 152 4.321527 GCAGCAATGAGAGTTAAAAAGGCT 60.322 41.667 0.00 0.00 0.00 4.58
150 153 5.397326 CAGCAATGAGAGTTAAAAAGGCTC 58.603 41.667 0.00 0.00 0.00 4.70
151 154 5.182760 CAGCAATGAGAGTTAAAAAGGCTCT 59.817 40.000 0.00 0.00 41.72 4.09
152 155 6.372659 CAGCAATGAGAGTTAAAAAGGCTCTA 59.627 38.462 0.00 0.00 39.43 2.43
153 156 6.597280 AGCAATGAGAGTTAAAAAGGCTCTAG 59.403 38.462 0.00 0.00 39.43 2.43
197 200 8.777413 CACTGAGAGACATTTTTCAATAGAACA 58.223 33.333 0.00 0.00 32.39 3.18
272 275 5.949233 AGACGTTTTTGCAGTTCAATTTC 57.051 34.783 0.00 0.00 34.12 2.17
282 285 4.202040 TGCAGTTCAATTTCAACAGAGGTG 60.202 41.667 0.00 0.00 0.00 4.00
285 288 4.580580 AGTTCAATTTCAACAGAGGTGGTC 59.419 41.667 0.92 0.00 0.00 4.02
316 487 6.902224 AAGTGAATTGTAAGTTTTGTTGGC 57.098 33.333 0.00 0.00 0.00 4.52
412 587 9.057089 ACTGGTAAAGATTAAACTTGAGTTCAG 57.943 33.333 0.00 6.07 37.25 3.02
413 588 8.974060 TGGTAAAGATTAAACTTGAGTTCAGT 57.026 30.769 0.00 0.00 37.25 3.41
414 589 9.052759 TGGTAAAGATTAAACTTGAGTTCAGTC 57.947 33.333 0.00 0.00 37.25 3.51
430 609 2.714250 TCAGTCTTTTTAGGGAAGGCCA 59.286 45.455 5.01 0.00 35.15 5.36
451 630 4.569966 CCATCATGGCTAGCTTTATCGATC 59.430 45.833 15.72 0.00 0.00 3.69
452 631 3.838120 TCATGGCTAGCTTTATCGATCG 58.162 45.455 15.72 9.36 0.00 3.69
465 645 7.327275 AGCTTTATCGATCGAACTTGATACATC 59.673 37.037 23.50 0.00 0.00 3.06
466 646 7.114953 GCTTTATCGATCGAACTTGATACATCA 59.885 37.037 23.50 0.00 34.44 3.07
471 651 5.866092 CGATCGAACTTGATACATCATCCAT 59.134 40.000 10.26 0.00 36.56 3.41
630 811 9.123902 CAAAGATAAAGATATCCACACATTCCA 57.876 33.333 0.00 0.00 39.02 3.53
663 852 4.113815 CCGAGCCCCATCAAGCCA 62.114 66.667 0.00 0.00 0.00 4.75
676 865 2.585330 TCAAGCCAGAGCAACATTTGA 58.415 42.857 0.00 0.00 43.56 2.69
679 868 1.202976 AGCCAGAGCAACATTTGACCT 60.203 47.619 0.00 0.00 43.56 3.85
680 869 1.615392 GCCAGAGCAACATTTGACCTT 59.385 47.619 0.00 0.00 39.53 3.50
684 873 2.808543 AGAGCAACATTTGACCTTCGAC 59.191 45.455 0.00 0.00 0.00 4.20
685 874 2.808543 GAGCAACATTTGACCTTCGACT 59.191 45.455 0.00 0.00 0.00 4.18
686 875 2.808543 AGCAACATTTGACCTTCGACTC 59.191 45.455 0.00 0.00 0.00 3.36
687 876 2.411547 GCAACATTTGACCTTCGACTCG 60.412 50.000 0.00 0.00 0.00 4.18
690 879 1.391485 CATTTGACCTTCGACTCGCTG 59.609 52.381 0.00 0.00 0.00 5.18
691 880 0.319555 TTTGACCTTCGACTCGCTGG 60.320 55.000 7.66 7.66 0.00 4.85
694 883 2.202676 CCTTCGACTCGCTGGAGC 60.203 66.667 0.00 0.00 44.48 4.70
695 884 2.568612 CTTCGACTCGCTGGAGCA 59.431 61.111 0.00 0.00 44.48 4.26
697 886 2.477972 CTTCGACTCGCTGGAGCACA 62.478 60.000 0.00 0.00 44.48 4.57
698 887 2.049156 CGACTCGCTGGAGCACAA 60.049 61.111 0.00 0.00 44.48 3.33
699 888 2.091112 CGACTCGCTGGAGCACAAG 61.091 63.158 0.00 0.00 44.48 3.16
702 891 0.179045 ACTCGCTGGAGCACAAGTTT 60.179 50.000 0.00 0.00 44.48 2.66
735 952 8.815141 CAAGGATTGTGAAATTTGTTATGTGA 57.185 30.769 0.00 0.00 42.34 3.58
745 962 9.979578 TGAAATTTGTTATGTGAATTGTTAGCT 57.020 25.926 0.00 0.00 0.00 3.32
749 966 7.517614 TTGTTATGTGAATTGTTAGCTGGAA 57.482 32.000 0.00 0.00 0.00 3.53
750 967 7.144722 TGTTATGTGAATTGTTAGCTGGAAG 57.855 36.000 0.00 0.00 0.00 3.46
762 979 3.419793 CTGGAAGCCTGGAACACAA 57.580 52.632 0.00 0.00 0.00 3.33
764 981 0.550914 TGGAAGCCTGGAACACAACT 59.449 50.000 0.00 0.00 0.00 3.16
776 1720 6.349777 CCTGGAACACAACTTTCTTAAACACA 60.350 38.462 0.00 0.00 0.00 3.72
798 1742 5.757808 ACAAGGGTTGTGAAATTTGTTATGC 59.242 36.000 0.00 0.00 43.48 3.14
850 1794 2.509964 TCCCTCCAAAATCCTAGCCTTC 59.490 50.000 0.00 0.00 0.00 3.46
868 1812 2.511600 CCTGTTGGATCGGACGGC 60.512 66.667 0.00 0.00 34.57 5.68
909 1853 4.383010 CCCACACAAAGAAAAGAAAAGGCT 60.383 41.667 0.00 0.00 0.00 4.58
910 1854 4.805719 CCACACAAAGAAAAGAAAAGGCTC 59.194 41.667 0.00 0.00 0.00 4.70
911 1855 4.805719 CACACAAAGAAAAGAAAAGGCTCC 59.194 41.667 0.00 0.00 0.00 4.70
954 1902 6.183360 CCTGAATAGTCTTGAACCGATAAGGA 60.183 42.308 0.00 0.00 45.00 3.36
985 1933 0.175073 CGTAAAACCCCGGAGAGGAG 59.825 60.000 0.73 0.00 45.00 3.69
986 1934 0.107800 GTAAAACCCCGGAGAGGAGC 60.108 60.000 0.73 0.00 45.00 4.70
987 1935 1.610554 TAAAACCCCGGAGAGGAGCG 61.611 60.000 0.73 0.00 45.00 5.03
1069 2028 2.044252 TCCCCCTCTCGTCTTCCG 60.044 66.667 0.00 0.00 38.13 4.30
1285 2277 3.123804 TCTTCTGCTTCGTTCTGTTGTC 58.876 45.455 0.00 0.00 0.00 3.18
1289 2281 3.067601 TCTGCTTCGTTCTGTTGTCTGTA 59.932 43.478 0.00 0.00 0.00 2.74
1349 2341 1.118965 TGTCCCAGGAGACGAGCAAA 61.119 55.000 0.00 0.00 39.77 3.68
1455 2447 1.448013 GAGGCACGTTACCCAGCTC 60.448 63.158 0.66 0.00 0.00 4.09
1469 2461 1.544759 CCAGCTCCCACGGTTAACTTT 60.545 52.381 5.42 0.00 0.00 2.66
1479 2471 2.542595 ACGGTTAACTTTGCTCTCGTTG 59.457 45.455 5.42 0.00 0.00 4.10
1484 2476 5.333111 GGTTAACTTTGCTCTCGTTGTACTG 60.333 44.000 5.42 0.00 0.00 2.74
1485 2477 2.135933 ACTTTGCTCTCGTTGTACTGC 58.864 47.619 0.00 0.00 0.00 4.40
1503 2495 3.129988 ACTGCTAGCATTTTGGCATTCTC 59.870 43.478 19.72 0.00 35.83 2.87
1504 2496 2.428171 TGCTAGCATTTTGGCATTCTCC 59.572 45.455 14.93 0.00 35.83 3.71
1508 2500 2.100252 AGCATTTTGGCATTCTCCGATG 59.900 45.455 0.00 0.00 35.83 3.84
1511 2503 3.358111 TTTTGGCATTCTCCGATGGTA 57.642 42.857 0.00 0.00 0.00 3.25
1512 2504 3.576078 TTTGGCATTCTCCGATGGTAT 57.424 42.857 0.00 0.00 0.00 2.73
1514 2506 4.698201 TTGGCATTCTCCGATGGTATAA 57.302 40.909 0.00 0.00 0.00 0.98
1516 2508 4.578871 TGGCATTCTCCGATGGTATAATG 58.421 43.478 0.00 0.00 0.00 1.90
1517 2509 4.041567 TGGCATTCTCCGATGGTATAATGT 59.958 41.667 0.00 0.00 0.00 2.71
1518 2510 5.247337 TGGCATTCTCCGATGGTATAATGTA 59.753 40.000 0.00 0.00 0.00 2.29
1519 2511 5.812642 GGCATTCTCCGATGGTATAATGTAG 59.187 44.000 0.00 0.00 0.00 2.74
1520 2512 6.398918 GCATTCTCCGATGGTATAATGTAGT 58.601 40.000 0.00 0.00 0.00 2.73
1521 2513 6.874134 GCATTCTCCGATGGTATAATGTAGTT 59.126 38.462 0.00 0.00 0.00 2.24
1522 2514 7.387948 GCATTCTCCGATGGTATAATGTAGTTT 59.612 37.037 0.00 0.00 0.00 2.66
1523 2515 9.273016 CATTCTCCGATGGTATAATGTAGTTTT 57.727 33.333 0.00 0.00 0.00 2.43
1524 2516 9.847224 ATTCTCCGATGGTATAATGTAGTTTTT 57.153 29.630 0.00 0.00 0.00 1.94
1525 2517 8.657074 TCTCCGATGGTATAATGTAGTTTTTG 57.343 34.615 0.00 0.00 0.00 2.44
1526 2518 7.225931 TCTCCGATGGTATAATGTAGTTTTTGC 59.774 37.037 0.00 0.00 0.00 3.68
1606 2601 4.497291 ACGATGGTTAAAGGAATGGCTA 57.503 40.909 0.00 0.00 0.00 3.93
1620 2615 7.814264 AGGAATGGCTATGTTTTCAAGATAG 57.186 36.000 0.00 0.00 37.69 2.08
1622 2617 7.836183 AGGAATGGCTATGTTTTCAAGATAGTT 59.164 33.333 3.41 0.00 37.16 2.24
1624 2619 6.757897 TGGCTATGTTTTCAAGATAGTTGG 57.242 37.500 3.41 0.00 37.16 3.77
1630 2625 9.231297 CTATGTTTTCAAGATAGTTGGGAAAGA 57.769 33.333 0.00 0.00 31.91 2.52
1631 2626 7.510549 TGTTTTCAAGATAGTTGGGAAAGAG 57.489 36.000 0.00 0.00 0.00 2.85
1632 2627 7.287061 TGTTTTCAAGATAGTTGGGAAAGAGA 58.713 34.615 0.00 0.00 0.00 3.10
1634 2629 8.630037 GTTTTCAAGATAGTTGGGAAAGAGAAA 58.370 33.333 0.00 0.00 0.00 2.52
1636 2631 8.940397 TTCAAGATAGTTGGGAAAGAGAAAAT 57.060 30.769 0.00 0.00 0.00 1.82
1637 2632 8.940397 TCAAGATAGTTGGGAAAGAGAAAATT 57.060 30.769 0.00 0.00 0.00 1.82
1638 2633 9.014297 TCAAGATAGTTGGGAAAGAGAAAATTC 57.986 33.333 0.00 0.00 0.00 2.17
1639 2634 8.796475 CAAGATAGTTGGGAAAGAGAAAATTCA 58.204 33.333 0.00 0.00 0.00 2.57
1640 2635 8.940397 AGATAGTTGGGAAAGAGAAAATTCAA 57.060 30.769 0.00 0.00 0.00 2.69
1641 2636 9.367160 AGATAGTTGGGAAAGAGAAAATTCAAA 57.633 29.630 0.00 0.00 0.00 2.69
1642 2637 9.981114 GATAGTTGGGAAAGAGAAAATTCAAAA 57.019 29.630 0.00 0.00 0.00 2.44
1644 2639 8.722480 AGTTGGGAAAGAGAAAATTCAAAAAG 57.278 30.769 0.00 0.00 0.00 2.27
1667 2662 5.715753 AGTAGTTGGGAAAGTGTAGACTAGG 59.284 44.000 0.00 0.00 0.00 3.02
1672 2667 6.088541 TGGGAAAGTGTAGACTAGGTAGAT 57.911 41.667 0.00 0.00 0.00 1.98
1673 2668 6.500336 TGGGAAAGTGTAGACTAGGTAGATT 58.500 40.000 0.00 0.00 0.00 2.40
1714 2709 7.661040 AGAACATCTGTGGTTTGGAAATTAAG 58.339 34.615 0.00 0.00 0.00 1.85
1765 2760 7.818930 GCTTGGGAATGAACATTAGAAAATCAA 59.181 33.333 0.00 0.00 0.00 2.57
1768 2763 9.656040 TGGGAATGAACATTAGAAAATCAATTG 57.344 29.630 0.00 0.00 0.00 2.32
1772 2788 8.937634 ATGAACATTAGAAAATCAATTGCCTC 57.062 30.769 0.00 0.00 0.00 4.70
1776 2792 7.550712 ACATTAGAAAATCAATTGCCTCTTCC 58.449 34.615 0.00 0.00 0.00 3.46
1781 2797 7.121382 AGAAAATCAATTGCCTCTTCCTGATA 58.879 34.615 0.00 0.00 0.00 2.15
1806 2823 1.209019 AGATGGACGCTGCATTCTTCT 59.791 47.619 0.00 0.00 0.00 2.85
1816 2833 3.368843 GCTGCATTCTTCTGTAGAGACCA 60.369 47.826 0.00 0.00 33.51 4.02
1865 2882 4.570369 TCATATGTGTTGGTACGAAGCATG 59.430 41.667 13.93 0.00 32.06 4.06
1883 2907 7.591795 CGAAGCATGTTTAGATACTGTAGGTAG 59.408 40.741 0.00 0.00 33.51 3.18
1896 2920 6.886178 ACTGTAGGTAGGATTACAATTGGT 57.114 37.500 10.83 0.00 30.06 3.67
1897 2921 7.266905 ACTGTAGGTAGGATTACAATTGGTT 57.733 36.000 10.83 0.00 30.06 3.67
1898 2922 7.110155 ACTGTAGGTAGGATTACAATTGGTTG 58.890 38.462 10.83 0.00 41.20 3.77
1899 2923 6.419791 TGTAGGTAGGATTACAATTGGTTGG 58.580 40.000 10.83 0.00 39.70 3.77
1900 2924 4.867086 AGGTAGGATTACAATTGGTTGGG 58.133 43.478 10.83 0.00 39.70 4.12
1901 2925 4.542525 AGGTAGGATTACAATTGGTTGGGA 59.457 41.667 10.83 0.00 39.70 4.37
1902 2926 4.643334 GGTAGGATTACAATTGGTTGGGAC 59.357 45.833 10.83 0.00 39.70 4.46
1916 2940 3.010250 GGTTGGGACTTGGGAGTAGAAAT 59.990 47.826 0.00 0.00 35.88 2.17
1923 2947 3.074538 ACTTGGGAGTAGAAATTGCAGGT 59.925 43.478 0.00 0.00 33.32 4.00
1924 2948 4.288626 ACTTGGGAGTAGAAATTGCAGGTA 59.711 41.667 0.00 0.00 33.32 3.08
1927 2951 4.192317 GGGAGTAGAAATTGCAGGTACAG 58.808 47.826 0.00 0.00 0.00 2.74
1941 2965 0.796312 GTACAGGACACCGTGCAATG 59.204 55.000 0.00 0.00 0.00 2.82
1942 2966 0.953471 TACAGGACACCGTGCAATGC 60.953 55.000 0.00 0.00 0.00 3.56
1943 2967 2.112928 AGGACACCGTGCAATGCA 59.887 55.556 2.72 2.72 35.60 3.96
2196 3259 2.094700 CACTACGCTTTCAGCTAGTCCA 60.095 50.000 0.00 0.00 39.60 4.02
2302 4102 1.355720 CTGGTTCACCCCTTCTTGGAT 59.644 52.381 0.00 0.00 38.35 3.41
2322 4122 2.338577 ATGAAGGGCGAGATCAAAGG 57.661 50.000 0.00 0.00 0.00 3.11
2418 4218 1.555533 GAAGGAGTGGACCGGAGATTT 59.444 52.381 9.46 0.00 34.73 2.17
2475 4287 5.405571 CAGCTGTTTGTTGTACCTGTAGTAG 59.594 44.000 5.25 0.00 0.00 2.57
2516 4328 8.988546 TTCAGTAGAGACTTGAATCTAGCTAT 57.011 34.615 0.00 0.00 31.73 2.97
2705 4578 2.482142 CCAGCCAAGTAGTAGTAGCAGC 60.482 54.545 3.50 0.00 0.00 5.25
2743 4616 0.671251 GTCGTCAGATCCTAGCCCAG 59.329 60.000 0.00 0.00 0.00 4.45
3009 4904 2.482333 CGACGTAGCAGGAGGAGGG 61.482 68.421 0.00 0.00 0.00 4.30
3010 4905 1.380112 GACGTAGCAGGAGGAGGGT 60.380 63.158 0.00 0.00 0.00 4.34
3011 4906 0.106819 GACGTAGCAGGAGGAGGGTA 60.107 60.000 0.00 0.00 0.00 3.69
3013 4908 0.824182 CGTAGCAGGAGGAGGGTAGG 60.824 65.000 0.00 0.00 0.00 3.18
3014 4909 0.470268 GTAGCAGGAGGAGGGTAGGG 60.470 65.000 0.00 0.00 0.00 3.53
3015 4910 1.665948 TAGCAGGAGGAGGGTAGGGG 61.666 65.000 0.00 0.00 0.00 4.79
3030 4925 4.164264 GGGGGAGGTGTACATGGT 57.836 61.111 0.00 0.00 0.00 3.55
3031 4926 2.394514 GGGGGAGGTGTACATGGTT 58.605 57.895 0.00 0.00 0.00 3.67
3032 4927 0.034477 GGGGGAGGTGTACATGGTTG 60.034 60.000 0.00 0.00 0.00 3.77
3033 4928 0.988832 GGGGAGGTGTACATGGTTGA 59.011 55.000 0.00 0.00 0.00 3.18
3034 4929 1.353022 GGGGAGGTGTACATGGTTGAA 59.647 52.381 0.00 0.00 0.00 2.69
3035 4930 2.025321 GGGGAGGTGTACATGGTTGAAT 60.025 50.000 0.00 0.00 0.00 2.57
3044 4939 4.462132 TGTACATGGTTGAATGTTGATGGG 59.538 41.667 0.00 0.00 41.09 4.00
3166 5065 1.920762 GCTTGTGCGATCTACGAGC 59.079 57.895 17.98 17.98 45.34 5.03
3335 5243 8.512956 GTTAATTTTCTTCTCCCAGTTCCTAAC 58.487 37.037 0.00 0.00 0.00 2.34
3341 5249 0.606604 TCCCAGTTCCTAACGACAGC 59.393 55.000 0.00 0.00 36.23 4.40
3343 5251 0.391263 CCAGTTCCTAACGACAGCCC 60.391 60.000 0.00 0.00 36.23 5.19
3353 5261 6.724351 TCCTAACGACAGCCCTGTATATATA 58.276 40.000 0.12 0.00 45.05 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.927294 AAGATCCGAGGTCAACAATTTATC 57.073 37.500 0.00 0.00 0.00 1.75
35 36 3.762407 TCAAAGATCCGAGGTCAACAA 57.238 42.857 0.00 0.00 0.00 2.83
131 134 7.760340 CGTACTAGAGCCTTTTTAACTCTCATT 59.240 37.037 0.00 0.00 41.03 2.57
140 143 4.796038 AGCACGTACTAGAGCCTTTTTA 57.204 40.909 0.00 0.00 0.00 1.52
145 148 3.003482 CGAATTAGCACGTACTAGAGCCT 59.997 47.826 0.00 0.00 0.00 4.58
147 150 4.206698 TCGAATTAGCACGTACTAGAGC 57.793 45.455 0.00 0.00 0.00 4.09
148 151 6.357503 GTGAATCGAATTAGCACGTACTAGAG 59.642 42.308 0.00 0.00 0.00 2.43
149 152 6.037940 AGTGAATCGAATTAGCACGTACTAGA 59.962 38.462 0.00 0.00 34.82 2.43
150 153 6.140895 CAGTGAATCGAATTAGCACGTACTAG 59.859 42.308 0.00 0.00 34.82 2.57
151 154 5.969435 CAGTGAATCGAATTAGCACGTACTA 59.031 40.000 0.00 0.00 34.82 1.82
152 155 4.798907 CAGTGAATCGAATTAGCACGTACT 59.201 41.667 0.00 0.00 34.82 2.73
153 156 4.796830 TCAGTGAATCGAATTAGCACGTAC 59.203 41.667 0.00 0.00 34.82 3.67
272 275 8.204160 TCACTTTATATATGACCACCTCTGTTG 58.796 37.037 0.00 0.00 0.00 3.33
316 487 8.991026 TGTGATCCAAGCTGAATTTTTATTTTG 58.009 29.630 0.00 0.00 0.00 2.44
379 554 9.810545 CAAGTTTAATCTTTACCAGTTGGAAAA 57.189 29.630 4.92 0.00 38.94 2.29
382 557 7.996644 ACTCAAGTTTAATCTTTACCAGTTGGA 59.003 33.333 4.92 0.00 38.94 3.53
385 560 9.403583 TGAACTCAAGTTTAATCTTTACCAGTT 57.596 29.630 0.00 3.68 38.56 3.16
386 561 8.974060 TGAACTCAAGTTTAATCTTTACCAGT 57.026 30.769 0.00 0.00 38.56 4.00
401 576 6.248569 TCCCTAAAAAGACTGAACTCAAGT 57.751 37.500 0.00 0.00 0.00 3.16
412 587 3.697166 TGATGGCCTTCCCTAAAAAGAC 58.303 45.455 15.62 0.00 0.00 3.01
413 588 4.280819 CATGATGGCCTTCCCTAAAAAGA 58.719 43.478 15.62 0.00 0.00 2.52
414 589 3.385755 CCATGATGGCCTTCCCTAAAAAG 59.614 47.826 15.62 0.00 0.00 2.27
430 609 4.158579 TCGATCGATAAAGCTAGCCATGAT 59.841 41.667 15.15 6.65 0.00 2.45
447 626 5.222631 TGGATGATGTATCAAGTTCGATCG 58.777 41.667 9.36 9.36 40.69 3.69
451 630 5.107182 GCTCATGGATGATGTATCAAGTTCG 60.107 44.000 0.00 0.00 40.69 3.95
452 631 5.996513 AGCTCATGGATGATGTATCAAGTTC 59.003 40.000 0.00 0.00 40.69 3.01
489 669 1.118965 TGGACTGACGAGCCTCCAAA 61.119 55.000 0.00 0.00 29.50 3.28
491 671 1.533033 TTGGACTGACGAGCCTCCA 60.533 57.895 0.00 0.00 0.00 3.86
492 672 1.079750 GTTGGACTGACGAGCCTCC 60.080 63.158 0.00 0.00 0.00 4.30
553 734 3.276857 AGATCTGCAAATCAAGCGACAT 58.723 40.909 2.24 0.00 33.85 3.06
556 737 5.181056 TGTTTTAGATCTGCAAATCAAGCGA 59.819 36.000 5.18 0.00 33.85 4.93
604 785 9.123902 TGGAATGTGTGGATATCTTTATCTTTG 57.876 33.333 2.05 0.00 35.51 2.77
605 786 9.125026 GTGGAATGTGTGGATATCTTTATCTTT 57.875 33.333 2.05 0.00 35.51 2.52
609 790 8.821686 TTTGTGGAATGTGTGGATATCTTTAT 57.178 30.769 2.05 0.00 0.00 1.40
612 793 7.537596 TTTTTGTGGAATGTGTGGATATCTT 57.462 32.000 2.05 0.00 0.00 2.40
656 837 2.294233 GTCAAATGTTGCTCTGGCTTGA 59.706 45.455 0.00 0.00 39.59 3.02
663 852 2.808543 GTCGAAGGTCAAATGTTGCTCT 59.191 45.455 0.00 0.00 0.00 4.09
676 865 2.995872 GCTCCAGCGAGTCGAAGGT 61.996 63.158 18.61 0.00 38.49 3.50
679 868 2.082629 TTGTGCTCCAGCGAGTCGAA 62.083 55.000 18.61 0.00 45.83 3.71
680 869 2.477972 CTTGTGCTCCAGCGAGTCGA 62.478 60.000 18.61 0.00 45.83 4.20
684 873 0.514691 GAAACTTGTGCTCCAGCGAG 59.485 55.000 0.00 0.00 45.83 5.03
685 874 0.106708 AGAAACTTGTGCTCCAGCGA 59.893 50.000 0.00 0.00 45.83 4.93
686 875 1.795768 TAGAAACTTGTGCTCCAGCG 58.204 50.000 0.00 0.00 45.83 5.18
687 876 3.315191 TGTTTAGAAACTTGTGCTCCAGC 59.685 43.478 6.69 0.00 39.59 4.85
690 879 4.893424 TGTGTTTAGAAACTTGTGCTCC 57.107 40.909 6.69 0.00 39.59 4.70
691 880 5.065988 TCCTTGTGTTTAGAAACTTGTGCTC 59.934 40.000 6.69 0.00 39.59 4.26
694 883 7.257722 ACAATCCTTGTGTTTAGAAACTTGTG 58.742 34.615 6.69 0.00 43.48 3.33
695 884 7.404671 ACAATCCTTGTGTTTAGAAACTTGT 57.595 32.000 6.69 4.36 43.48 3.16
723 940 8.121305 TCCAGCTAACAATTCACATAACAAAT 57.879 30.769 0.00 0.00 0.00 2.32
730 947 3.445096 GGCTTCCAGCTAACAATTCACAT 59.555 43.478 0.00 0.00 41.99 3.21
731 948 2.819608 GGCTTCCAGCTAACAATTCACA 59.180 45.455 0.00 0.00 41.99 3.58
734 951 2.424956 CCAGGCTTCCAGCTAACAATTC 59.575 50.000 0.00 0.00 41.99 2.17
735 952 2.041620 TCCAGGCTTCCAGCTAACAATT 59.958 45.455 0.00 0.00 41.99 2.32
737 954 1.064003 TCCAGGCTTCCAGCTAACAA 58.936 50.000 0.00 0.00 41.99 2.83
739 956 1.271379 TGTTCCAGGCTTCCAGCTAAC 60.271 52.381 0.00 0.00 41.99 2.34
742 959 1.073897 GTGTTCCAGGCTTCCAGCT 59.926 57.895 0.00 0.00 41.99 4.24
744 961 0.954452 GTTGTGTTCCAGGCTTCCAG 59.046 55.000 0.00 0.00 0.00 3.86
745 962 0.550914 AGTTGTGTTCCAGGCTTCCA 59.449 50.000 0.00 0.00 0.00 3.53
749 966 2.736670 AGAAAGTTGTGTTCCAGGCT 57.263 45.000 0.00 0.00 0.00 4.58
750 967 4.911514 TTAAGAAAGTTGTGTTCCAGGC 57.088 40.909 0.00 0.00 0.00 4.85
751 968 6.033966 GTGTTTAAGAAAGTTGTGTTCCAGG 58.966 40.000 0.00 0.00 0.00 4.45
752 969 6.616947 TGTGTTTAAGAAAGTTGTGTTCCAG 58.383 36.000 0.00 0.00 0.00 3.86
753 970 6.576662 TGTGTTTAAGAAAGTTGTGTTCCA 57.423 33.333 0.00 0.00 0.00 3.53
754 971 6.530181 CCTTGTGTTTAAGAAAGTTGTGTTCC 59.470 38.462 0.00 0.00 0.00 3.62
755 972 6.530181 CCCTTGTGTTTAAGAAAGTTGTGTTC 59.470 38.462 0.00 0.00 0.00 3.18
756 973 6.014925 ACCCTTGTGTTTAAGAAAGTTGTGTT 60.015 34.615 0.00 0.00 0.00 3.32
758 975 5.961272 ACCCTTGTGTTTAAGAAAGTTGTG 58.039 37.500 0.00 0.00 0.00 3.33
759 976 6.014925 ACAACCCTTGTGTTTAAGAAAGTTGT 60.015 34.615 0.00 0.00 43.48 3.32
760 977 6.394809 ACAACCCTTGTGTTTAAGAAAGTTG 58.605 36.000 0.00 0.00 43.48 3.16
761 978 6.599356 ACAACCCTTGTGTTTAAGAAAGTT 57.401 33.333 0.00 0.00 43.48 2.66
776 1720 4.987912 CGCATAACAAATTTCACAACCCTT 59.012 37.500 0.00 0.00 0.00 3.95
798 1742 6.839301 GTGACACATATAACGCTAACAATTCG 59.161 38.462 0.00 0.00 0.00 3.34
850 1794 2.186903 CCGTCCGATCCAACAGGG 59.813 66.667 0.00 0.00 38.37 4.45
954 1902 1.543358 GGTTTTACGGTCGTCTCCTCT 59.457 52.381 0.00 0.00 0.00 3.69
1285 2277 0.368907 CCGCACGAAATCGGTTACAG 59.631 55.000 7.81 0.00 44.95 2.74
1289 2281 1.964373 AAGCCGCACGAAATCGGTT 60.964 52.632 7.81 0.00 46.79 4.44
1349 2341 0.615331 ACGTCATGTGCTCCCTGAAT 59.385 50.000 0.00 0.00 0.00 2.57
1455 2447 1.804748 GAGAGCAAAGTTAACCGTGGG 59.195 52.381 0.88 0.00 0.00 4.61
1469 2461 1.135373 GCTAGCAGTACAACGAGAGCA 60.135 52.381 10.63 0.00 0.00 4.26
1479 2471 4.096984 AGAATGCCAAAATGCTAGCAGTAC 59.903 41.667 23.89 11.39 38.89 2.73
1484 2476 2.542411 CGGAGAATGCCAAAATGCTAGC 60.542 50.000 8.10 8.10 0.00 3.42
1485 2477 2.945008 TCGGAGAATGCCAAAATGCTAG 59.055 45.455 0.00 0.00 0.00 3.42
1503 2495 7.132213 CAGCAAAAACTACATTATACCATCGG 58.868 38.462 0.00 0.00 0.00 4.18
1504 2496 6.632834 GCAGCAAAAACTACATTATACCATCG 59.367 38.462 0.00 0.00 0.00 3.84
1508 2500 7.273381 CAGTTGCAGCAAAAACTACATTATACC 59.727 37.037 10.11 0.00 34.90 2.73
1511 2503 5.634859 GCAGTTGCAGCAAAAACTACATTAT 59.365 36.000 10.11 0.00 41.59 1.28
1512 2504 4.981674 GCAGTTGCAGCAAAAACTACATTA 59.018 37.500 10.11 0.00 41.59 1.90
1514 2506 3.383761 GCAGTTGCAGCAAAAACTACAT 58.616 40.909 10.11 0.00 41.59 2.29
1516 2508 2.127251 GGCAGTTGCAGCAAAAACTAC 58.873 47.619 10.11 0.00 44.36 2.73
1517 2509 2.031120 AGGCAGTTGCAGCAAAAACTA 58.969 42.857 10.11 0.00 44.36 2.24
1518 2510 0.826062 AGGCAGTTGCAGCAAAAACT 59.174 45.000 10.11 0.00 44.36 2.66
1519 2511 0.932399 CAGGCAGTTGCAGCAAAAAC 59.068 50.000 10.11 0.00 44.36 2.43
1520 2512 0.810823 GCAGGCAGTTGCAGCAAAAA 60.811 50.000 10.11 0.00 43.53 1.94
1521 2513 1.227321 GCAGGCAGTTGCAGCAAAA 60.227 52.632 10.11 0.00 43.53 2.44
1522 2514 2.418356 GCAGGCAGTTGCAGCAAA 59.582 55.556 10.11 0.00 43.53 3.68
1523 2515 3.968568 CGCAGGCAGTTGCAGCAA 61.969 61.111 2.83 2.83 44.28 3.91
1525 2517 2.128853 TAAACGCAGGCAGTTGCAGC 62.129 55.000 6.43 8.36 44.28 5.25
1526 2518 0.523072 ATAAACGCAGGCAGTTGCAG 59.477 50.000 6.43 0.00 44.28 4.41
1606 2601 7.944554 TCTCTTTCCCAACTATCTTGAAAACAT 59.055 33.333 0.00 0.00 0.00 2.71
1620 2615 8.492673 ACTTTTTGAATTTTCTCTTTCCCAAC 57.507 30.769 0.00 0.00 0.00 3.77
1622 2617 8.977412 ACTACTTTTTGAATTTTCTCTTTCCCA 58.023 29.630 0.00 0.00 0.00 4.37
1630 2625 9.599866 CTTTCCCAACTACTTTTTGAATTTTCT 57.400 29.630 0.00 0.00 0.00 2.52
1631 2626 9.378551 ACTTTCCCAACTACTTTTTGAATTTTC 57.621 29.630 0.00 0.00 0.00 2.29
1632 2627 9.161629 CACTTTCCCAACTACTTTTTGAATTTT 57.838 29.630 0.00 0.00 0.00 1.82
1634 2629 7.847096 ACACTTTCCCAACTACTTTTTGAATT 58.153 30.769 0.00 0.00 0.00 2.17
1636 2631 6.844097 ACACTTTCCCAACTACTTTTTGAA 57.156 33.333 0.00 0.00 0.00 2.69
1637 2632 7.281549 GTCTACACTTTCCCAACTACTTTTTGA 59.718 37.037 0.00 0.00 0.00 2.69
1638 2633 7.282450 AGTCTACACTTTCCCAACTACTTTTTG 59.718 37.037 0.00 0.00 0.00 2.44
1639 2634 7.344134 AGTCTACACTTTCCCAACTACTTTTT 58.656 34.615 0.00 0.00 0.00 1.94
1640 2635 6.896883 AGTCTACACTTTCCCAACTACTTTT 58.103 36.000 0.00 0.00 0.00 2.27
1641 2636 6.496144 AGTCTACACTTTCCCAACTACTTT 57.504 37.500 0.00 0.00 0.00 2.66
1642 2637 6.210984 CCTAGTCTACACTTTCCCAACTACTT 59.789 42.308 0.00 0.00 33.62 2.24
1643 2638 5.715753 CCTAGTCTACACTTTCCCAACTACT 59.284 44.000 0.00 0.00 33.62 2.57
1644 2639 5.479724 ACCTAGTCTACACTTTCCCAACTAC 59.520 44.000 0.00 0.00 33.62 2.73
1651 2646 8.529476 TCAAAATCTACCTAGTCTACACTTTCC 58.471 37.037 0.00 0.00 33.62 3.13
1673 2668 9.725019 ACAGATGTTCTTATTATCAGTGTCAAA 57.275 29.630 0.00 0.00 0.00 2.69
1714 2709 0.102481 CATGGCATCAGCTTTGCTCC 59.898 55.000 15.91 3.76 36.40 4.70
1781 2797 0.251354 ATGCAGCGTCCATCTGAACT 59.749 50.000 0.00 0.00 33.54 3.01
1806 2823 3.165875 AGCTACTTTGCTGGTCTCTACA 58.834 45.455 0.00 0.00 42.33 2.74
1836 2853 7.148540 GCTTCGTACCAACACATATGAACTTAA 60.149 37.037 10.38 0.00 0.00 1.85
1837 2854 6.311935 GCTTCGTACCAACACATATGAACTTA 59.688 38.462 10.38 0.00 0.00 2.24
1883 2907 4.081697 CCAAGTCCCAACCAATTGTAATCC 60.082 45.833 4.43 0.00 33.60 3.01
1896 2920 4.662278 CAATTTCTACTCCCAAGTCCCAA 58.338 43.478 0.00 0.00 36.92 4.12
1897 2921 3.561313 GCAATTTCTACTCCCAAGTCCCA 60.561 47.826 0.00 0.00 36.92 4.37
1898 2922 3.017442 GCAATTTCTACTCCCAAGTCCC 58.983 50.000 0.00 0.00 36.92 4.46
1899 2923 3.686016 TGCAATTTCTACTCCCAAGTCC 58.314 45.455 0.00 0.00 36.92 3.85
1900 2924 3.691609 CCTGCAATTTCTACTCCCAAGTC 59.308 47.826 0.00 0.00 36.92 3.01
1901 2925 3.074538 ACCTGCAATTTCTACTCCCAAGT 59.925 43.478 0.00 0.00 39.66 3.16
1902 2926 3.690460 ACCTGCAATTTCTACTCCCAAG 58.310 45.455 0.00 0.00 0.00 3.61
1916 2940 1.369692 CGGTGTCCTGTACCTGCAA 59.630 57.895 0.00 0.00 36.03 4.08
1923 2947 0.953471 GCATTGCACGGTGTCCTGTA 60.953 55.000 10.24 0.00 0.00 2.74
1924 2948 2.260869 GCATTGCACGGTGTCCTGT 61.261 57.895 10.24 0.00 0.00 4.00
1927 2951 0.953471 TACTGCATTGCACGGTGTCC 60.953 55.000 7.38 0.00 33.79 4.02
1941 2965 4.635765 TCCTCATGTTTACTTGCATACTGC 59.364 41.667 0.00 0.00 45.29 4.40
1942 2966 5.220472 CGTCCTCATGTTTACTTGCATACTG 60.220 44.000 0.00 0.00 0.00 2.74
1943 2967 4.870426 CGTCCTCATGTTTACTTGCATACT 59.130 41.667 0.00 0.00 0.00 2.12
2196 3259 4.093703 CACGTCTCAGAGATTTCGTCTAGT 59.906 45.833 10.76 0.00 37.29 2.57
2302 4102 2.104792 CCCTTTGATCTCGCCCTTCATA 59.895 50.000 0.00 0.00 0.00 2.15
2418 4218 4.518970 AGACAAAAGGAAATCAGCGCTAAA 59.481 37.500 10.99 0.64 0.00 1.85
2475 4287 7.492020 TCTCTACTGAAACATCGAGACTACTAC 59.508 40.741 0.00 0.00 0.00 2.73
2705 4578 0.165944 CCTGCCGCGTTAGAAACTTG 59.834 55.000 4.92 0.00 0.00 3.16
2743 4616 1.438814 CATGGATTTCTTGCCCGGC 59.561 57.895 1.04 1.04 0.00 6.13
2880 4753 3.319755 CATTGAATGAACTGTGGGCAAC 58.680 45.455 0.00 0.00 0.00 4.17
2884 4757 1.205417 GGCCATTGAATGAACTGTGGG 59.795 52.381 6.76 0.00 0.00 4.61
3013 4908 0.034477 CAACCATGTACACCTCCCCC 60.034 60.000 0.00 0.00 0.00 5.40
3014 4909 0.988832 TCAACCATGTACACCTCCCC 59.011 55.000 0.00 0.00 0.00 4.81
3015 4910 2.871096 TTCAACCATGTACACCTCCC 57.129 50.000 0.00 0.00 0.00 4.30
3017 4912 4.759693 TCAACATTCAACCATGTACACCTC 59.240 41.667 0.00 0.00 36.30 3.85
3018 4913 4.724399 TCAACATTCAACCATGTACACCT 58.276 39.130 0.00 0.00 36.30 4.00
3019 4914 5.401550 CATCAACATTCAACCATGTACACC 58.598 41.667 0.00 0.00 36.30 4.16
3020 4915 5.401550 CCATCAACATTCAACCATGTACAC 58.598 41.667 0.00 0.00 36.30 2.90
3021 4916 4.462132 CCCATCAACATTCAACCATGTACA 59.538 41.667 0.00 0.00 36.30 2.90
3022 4917 4.462483 ACCCATCAACATTCAACCATGTAC 59.538 41.667 0.00 0.00 36.30 2.90
3023 4918 4.671831 ACCCATCAACATTCAACCATGTA 58.328 39.130 0.00 0.00 36.30 2.29
3024 4919 3.509442 ACCCATCAACATTCAACCATGT 58.491 40.909 0.00 0.00 39.17 3.21
3025 4920 4.221262 AGAACCCATCAACATTCAACCATG 59.779 41.667 0.00 0.00 0.00 3.66
3026 4921 4.419282 AGAACCCATCAACATTCAACCAT 58.581 39.130 0.00 0.00 0.00 3.55
3027 4922 3.843422 AGAACCCATCAACATTCAACCA 58.157 40.909 0.00 0.00 0.00 3.67
3028 4923 4.321974 GGAAGAACCCATCAACATTCAACC 60.322 45.833 0.00 0.00 0.00 3.77
3029 4924 4.524328 AGGAAGAACCCATCAACATTCAAC 59.476 41.667 0.00 0.00 40.05 3.18
3030 4925 4.523943 CAGGAAGAACCCATCAACATTCAA 59.476 41.667 0.00 0.00 40.05 2.69
3031 4926 4.081406 CAGGAAGAACCCATCAACATTCA 58.919 43.478 0.00 0.00 40.05 2.57
3032 4927 4.335416 TCAGGAAGAACCCATCAACATTC 58.665 43.478 0.00 0.00 40.05 2.67
3033 4928 4.387026 TCAGGAAGAACCCATCAACATT 57.613 40.909 0.00 0.00 40.05 2.71
3034 4929 4.387026 TTCAGGAAGAACCCATCAACAT 57.613 40.909 0.00 0.00 40.05 2.71
3035 4930 3.874383 TTCAGGAAGAACCCATCAACA 57.126 42.857 0.00 0.00 40.05 3.33
3044 4939 0.171231 GGCGCCATTTCAGGAAGAAC 59.829 55.000 24.80 0.00 35.56 3.01
3296 5203 6.301169 AGAAAATTAACAGGAGATCGGTCT 57.699 37.500 0.00 0.00 37.42 3.85
3299 5206 6.258947 GGAGAAGAAAATTAACAGGAGATCGG 59.741 42.308 0.00 0.00 0.00 4.18
3335 5243 7.997482 ACTTACATATATATACAGGGCTGTCG 58.003 38.462 0.00 0.00 43.74 4.35
3353 5261 3.929094 TCGCCGGAAGTAAAACTTACAT 58.071 40.909 5.05 0.00 39.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.