Multiple sequence alignment - TraesCS5A01G200100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G200100 chr5A 100.000 3316 0 0 1 3316 405012775 405016090 0.000000e+00 6124
1 TraesCS5A01G200100 chr5A 88.032 376 27 11 2268 2635 482023299 482023664 2.360000e-116 429
2 TraesCS5A01G200100 chr5B 91.810 1514 60 28 843 2335 358375573 358377043 0.000000e+00 2050
3 TraesCS5A01G200100 chr5B 92.226 939 33 13 1066 1990 357998748 357999660 0.000000e+00 1293
4 TraesCS5A01G200100 chr5B 92.434 608 24 6 2720 3316 358378432 358379028 0.000000e+00 848
5 TraesCS5A01G200100 chr5B 85.169 236 20 11 843 1070 357993252 357993480 9.250000e-56 228
6 TraesCS5A01G200100 chr5D 92.123 1460 50 23 808 2225 312057589 312059025 0.000000e+00 1999
7 TraesCS5A01G200100 chr5D 88.235 680 37 17 2660 3316 312059194 312059853 0.000000e+00 773
8 TraesCS5A01G200100 chr5D 87.558 434 42 7 1554 1987 311883501 311883922 2.970000e-135 492
9 TraesCS5A01G200100 chr5D 86.588 425 25 22 977 1400 311806774 311807167 1.090000e-119 440
10 TraesCS5A01G200100 chr5D 87.467 375 31 7 2268 2635 196431616 196431251 5.120000e-113 418
11 TraesCS5A01G200100 chr5D 87.131 373 31 8 2268 2632 432406339 432406702 1.110000e-109 407
12 TraesCS5A01G200100 chr5D 94.083 169 10 0 1232 1400 311814064 311814232 1.180000e-64 257
13 TraesCS5A01G200100 chr5D 85.211 142 15 2 874 1012 311732286 311732424 1.240000e-29 141
14 TraesCS5A01G200100 chr1A 80.666 631 91 18 114 739 575203455 575202851 8.380000e-126 460
15 TraesCS5A01G200100 chr1A 89.627 241 20 3 2268 2507 371940435 371940199 5.380000e-78 302
16 TraesCS5A01G200100 chr3B 87.798 377 28 8 2268 2635 201554708 201555075 3.060000e-115 425
17 TraesCS5A01G200100 chr3B 86.400 375 33 9 2268 2635 702969015 702969378 8.620000e-106 394
18 TraesCS5A01G200100 chrUn 87.733 375 29 8 2268 2635 371791127 371790763 3.960000e-114 422
19 TraesCS5A01G200100 chr3D 87.733 375 29 8 2268 2635 589248925 589248561 3.960000e-114 422
20 TraesCS5A01G200100 chr1D 87.366 372 38 6 2268 2635 177261956 177261590 5.120000e-113 418
21 TraesCS5A01G200100 chr1D 81.986 433 73 5 219 648 315606787 315606357 2.430000e-96 363
22 TraesCS5A01G200100 chr2A 81.757 444 63 15 112 549 608631761 608631330 4.070000e-94 355
23 TraesCS5A01G200100 chr2A 74.434 309 55 13 1112 1417 38878970 38879257 9.720000e-21 111
24 TraesCS5A01G200100 chr2A 80.916 131 22 1 1111 1238 38755041 38755171 2.100000e-17 100
25 TraesCS5A01G200100 chr4A 79.394 330 46 16 114 436 313200108 313200422 2.590000e-51 213
26 TraesCS5A01G200100 chr6B 84.024 169 22 2 177 345 9092275 9092112 1.230000e-34 158
27 TraesCS5A01G200100 chr2B 75.817 306 53 10 1111 1413 58826207 58826494 5.770000e-28 135
28 TraesCS5A01G200100 chr2B 87.500 88 11 0 1330 1417 58773601 58773688 5.850000e-18 102
29 TraesCS5A01G200100 chr4D 88.496 113 7 5 2504 2616 35780923 35780817 7.460000e-27 132
30 TraesCS5A01G200100 chr2D 82.609 138 21 1 1111 1245 35564378 35564515 5.810000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G200100 chr5A 405012775 405016090 3315 False 6124 6124 100.000 1 3316 1 chr5A.!!$F1 3315
1 TraesCS5A01G200100 chr5B 358375573 358379028 3455 False 1449 2050 92.122 843 3316 2 chr5B.!!$F3 2473
2 TraesCS5A01G200100 chr5B 357998748 357999660 912 False 1293 1293 92.226 1066 1990 1 chr5B.!!$F2 924
3 TraesCS5A01G200100 chr5D 312057589 312059853 2264 False 1386 1999 90.179 808 3316 2 chr5D.!!$F6 2508
4 TraesCS5A01G200100 chr1A 575202851 575203455 604 True 460 460 80.666 114 739 1 chr1A.!!$R2 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
583 585 0.030638 CGGTGAACCTTTGCCACAAG 59.969 55.0 0.0 0.0 32.79 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2512 2628 0.390492 AAACTCTTGCTTTGCTGCCC 59.61 50.0 0.0 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.406173 CACGCGCAGAGTCCGTCT 62.406 66.667 5.73 0.00 39.58 4.18
24 25 4.104417 ACGCGCAGAGTCCGTCTC 62.104 66.667 5.73 0.00 33.29 3.36
25 26 4.838486 CGCGCAGAGTCCGTCTCC 62.838 72.222 8.75 0.00 43.71 3.71
26 27 3.444805 GCGCAGAGTCCGTCTCCT 61.445 66.667 0.30 0.00 43.71 3.69
27 28 2.487428 CGCAGAGTCCGTCTCCTG 59.513 66.667 2.01 0.00 43.71 3.86
28 29 2.183046 GCAGAGTCCGTCTCCTGC 59.817 66.667 0.00 0.00 43.71 4.85
29 30 2.487428 CAGAGTCCGTCTCCTGCG 59.513 66.667 2.01 0.00 43.71 5.18
30 31 2.034376 AGAGTCCGTCTCCTGCGT 59.966 61.111 2.01 0.00 43.71 5.24
31 32 1.025113 CAGAGTCCGTCTCCTGCGTA 61.025 60.000 2.01 0.00 43.71 4.42
32 33 0.745128 AGAGTCCGTCTCCTGCGTAG 60.745 60.000 0.00 0.00 43.71 3.51
33 34 2.325666 GAGTCCGTCTCCTGCGTAGC 62.326 65.000 0.00 0.00 45.70 3.58
59 60 6.258230 TCAAATCGATTTTGATCAAGTGCT 57.742 33.333 20.56 0.00 46.80 4.40
60 61 6.317088 TCAAATCGATTTTGATCAAGTGCTC 58.683 36.000 20.56 3.85 46.80 4.26
61 62 5.885230 AATCGATTTTGATCAAGTGCTCA 57.115 34.783 8.41 0.00 0.00 4.26
62 63 4.934075 TCGATTTTGATCAAGTGCTCAG 57.066 40.909 8.41 0.00 0.00 3.35
63 64 3.686241 TCGATTTTGATCAAGTGCTCAGG 59.314 43.478 8.41 0.00 0.00 3.86
64 65 3.730061 CGATTTTGATCAAGTGCTCAGGC 60.730 47.826 8.41 0.00 39.26 4.85
74 75 2.470156 TGCTCAGGCAATTACGCTG 58.530 52.632 0.00 0.00 46.36 5.18
75 76 1.026182 TGCTCAGGCAATTACGCTGG 61.026 55.000 0.00 0.00 46.36 4.85
76 77 1.723870 CTCAGGCAATTACGCTGGC 59.276 57.895 0.00 0.00 39.56 4.85
77 78 1.718757 CTCAGGCAATTACGCTGGCC 61.719 60.000 0.00 0.00 46.77 5.36
79 80 2.489751 GGCAATTACGCTGGCCAC 59.510 61.111 0.00 0.00 45.70 5.01
80 81 2.489751 GCAATTACGCTGGCCACC 59.510 61.111 0.00 0.00 0.00 4.61
81 82 2.339556 GCAATTACGCTGGCCACCA 61.340 57.895 0.00 0.00 0.00 4.17
91 92 4.722700 GGCCACCAGTCCGTGCAT 62.723 66.667 0.00 0.00 32.10 3.96
92 93 3.434319 GCCACCAGTCCGTGCATG 61.434 66.667 0.00 0.00 32.10 4.06
93 94 2.032528 CCACCAGTCCGTGCATGT 59.967 61.111 4.96 0.00 32.10 3.21
94 95 1.295101 CCACCAGTCCGTGCATGTA 59.705 57.895 4.96 0.00 32.10 2.29
95 96 0.740868 CCACCAGTCCGTGCATGTAG 60.741 60.000 4.96 0.00 32.10 2.74
96 97 0.740868 CACCAGTCCGTGCATGTAGG 60.741 60.000 4.96 3.62 0.00 3.18
97 98 1.153369 CCAGTCCGTGCATGTAGGG 60.153 63.158 15.56 15.56 0.00 3.53
98 99 1.596934 CAGTCCGTGCATGTAGGGT 59.403 57.895 19.98 1.46 0.00 4.34
99 100 0.036388 CAGTCCGTGCATGTAGGGTT 60.036 55.000 19.98 8.92 0.00 4.11
100 101 0.690762 AGTCCGTGCATGTAGGGTTT 59.309 50.000 19.98 8.61 0.00 3.27
101 102 1.084289 GTCCGTGCATGTAGGGTTTC 58.916 55.000 19.98 9.86 0.00 2.78
102 103 0.981183 TCCGTGCATGTAGGGTTTCT 59.019 50.000 19.98 0.00 0.00 2.52
103 104 1.349688 TCCGTGCATGTAGGGTTTCTT 59.650 47.619 19.98 0.00 0.00 2.52
104 105 2.159382 CCGTGCATGTAGGGTTTCTTT 58.841 47.619 13.73 0.00 0.00 2.52
105 106 2.556622 CCGTGCATGTAGGGTTTCTTTT 59.443 45.455 13.73 0.00 0.00 2.27
106 107 3.564511 CGTGCATGTAGGGTTTCTTTTG 58.435 45.455 0.00 0.00 0.00 2.44
107 108 3.317150 GTGCATGTAGGGTTTCTTTTGC 58.683 45.455 0.00 0.00 0.00 3.68
108 109 2.961741 TGCATGTAGGGTTTCTTTTGCA 59.038 40.909 0.00 0.00 0.00 4.08
109 110 3.386078 TGCATGTAGGGTTTCTTTTGCAA 59.614 39.130 0.00 0.00 0.00 4.08
110 111 3.740832 GCATGTAGGGTTTCTTTTGCAAC 59.259 43.478 0.00 0.00 0.00 4.17
111 112 4.501400 GCATGTAGGGTTTCTTTTGCAACT 60.501 41.667 0.00 0.00 0.00 3.16
112 113 4.647424 TGTAGGGTTTCTTTTGCAACTG 57.353 40.909 0.00 0.00 0.00 3.16
128 129 5.189928 TGCAACTGTTTCAGAAGGTTTCTA 58.810 37.500 3.70 0.00 38.11 2.10
131 132 6.719365 CAACTGTTTCAGAAGGTTTCTACAG 58.281 40.000 14.24 14.24 44.06 2.74
139 140 3.648545 AGAAGGTTTCTACAGCAGAGGTT 59.351 43.478 0.00 0.00 38.49 3.50
142 143 5.562298 AGGTTTCTACAGCAGAGGTTTTA 57.438 39.130 0.00 0.00 33.83 1.52
146 147 7.505923 AGGTTTCTACAGCAGAGGTTTTATTTT 59.494 33.333 0.00 0.00 33.83 1.82
147 148 7.808381 GGTTTCTACAGCAGAGGTTTTATTTTC 59.192 37.037 0.00 0.00 33.83 2.29
148 149 8.349983 GTTTCTACAGCAGAGGTTTTATTTTCA 58.650 33.333 0.00 0.00 33.83 2.69
149 150 7.672983 TCTACAGCAGAGGTTTTATTTTCAG 57.327 36.000 0.00 0.00 0.00 3.02
151 152 6.959639 ACAGCAGAGGTTTTATTTTCAGAA 57.040 33.333 0.00 0.00 0.00 3.02
152 153 7.346751 ACAGCAGAGGTTTTATTTTCAGAAA 57.653 32.000 0.00 0.00 0.00 2.52
153 154 7.781056 ACAGCAGAGGTTTTATTTTCAGAAAA 58.219 30.769 10.80 10.80 34.41 2.29
154 155 8.424133 ACAGCAGAGGTTTTATTTTCAGAAAAT 58.576 29.630 22.03 22.03 43.19 1.82
170 171 9.868277 TTTCAGAAAATAAAACAGATGTGTGTT 57.132 25.926 3.59 3.59 42.62 3.32
171 172 8.854979 TCAGAAAATAAAACAGATGTGTGTTG 57.145 30.769 8.64 0.00 39.82 3.33
173 174 9.299963 CAGAAAATAAAACAGATGTGTGTTGAA 57.700 29.630 8.64 0.00 39.82 2.69
174 175 9.520204 AGAAAATAAAACAGATGTGTGTTGAAG 57.480 29.630 8.64 0.00 39.82 3.02
179 180 7.961325 AAAACAGATGTGTGTTGAAGTTTTT 57.039 28.000 0.00 0.00 39.82 1.94
200 201 5.957842 TTTCGGCAACATGATCTAGTTTT 57.042 34.783 0.00 0.00 0.00 2.43
206 207 7.389330 TCGGCAACATGATCTAGTTTTAGAAAA 59.611 33.333 0.00 0.00 39.29 2.29
236 237 7.202526 TGCAATAGAGGTCTTGTTTCAAAAAG 58.797 34.615 0.00 0.00 0.00 2.27
255 256 6.785488 AAAAGAAAAGAAAAATGGATCGGC 57.215 33.333 0.00 0.00 0.00 5.54
256 257 5.467035 AAGAAAAGAAAAATGGATCGGCA 57.533 34.783 0.00 0.00 0.00 5.69
272 274 5.335976 GGATCGGCAGTGAAGATTTTTCTTT 60.336 40.000 0.00 0.00 0.00 2.52
279 281 6.183360 GCAGTGAAGATTTTTCTTTTGCAACA 60.183 34.615 0.00 0.00 34.76 3.33
280 282 7.623925 GCAGTGAAGATTTTTCTTTTGCAACAA 60.624 33.333 0.00 0.00 34.76 2.83
297 299 4.033243 GCAACAAGGCTCTTGTTTCAAAAG 59.967 41.667 22.77 14.97 40.30 2.27
306 308 5.336690 GCTCTTGTTTCAAAAGCATATCCCA 60.337 40.000 3.39 0.00 33.21 4.37
308 310 5.185635 TCTTGTTTCAAAAGCATATCCCAGG 59.814 40.000 0.00 0.00 0.00 4.45
312 314 2.760092 TCAAAAGCATATCCCAGGTTGC 59.240 45.455 0.00 0.00 35.34 4.17
330 332 0.667792 GCAGAAAGCGTCGGAGAAGT 60.668 55.000 0.00 0.00 39.69 3.01
334 336 3.591254 AAGCGTCGGAGAAGTGCCC 62.591 63.158 0.00 0.00 39.69 5.36
338 340 3.691342 TCGGAGAAGTGCCCGGTG 61.691 66.667 0.00 0.00 45.36 4.94
341 343 1.675219 GGAGAAGTGCCCGGTGTTA 59.325 57.895 0.00 0.00 0.00 2.41
351 353 0.742505 CCCGGTGTTAGAGCATACGA 59.257 55.000 0.00 0.00 0.00 3.43
357 359 3.068307 GGTGTTAGAGCATACGAGGTGAT 59.932 47.826 0.00 0.00 0.00 3.06
367 369 0.806868 ACGAGGTGATGCATTGCAAG 59.193 50.000 16.46 4.20 43.62 4.01
371 373 0.179156 GGTGATGCATTGCAAGACGG 60.179 55.000 16.46 0.00 43.62 4.79
381 383 3.092081 GCAAGACGGTGCATGTTTC 57.908 52.632 0.00 0.00 44.29 2.78
402 404 7.013178 TGTTTCAGAAACATAGATTCAGTTGCA 59.987 33.333 22.53 0.00 45.79 4.08
407 409 7.536622 CAGAAACATAGATTCAGTTGCAGAAAC 59.463 37.037 0.00 0.00 39.24 2.78
411 413 1.266718 GATTCAGTTGCAGAAACCGCA 59.733 47.619 0.00 0.00 39.85 5.69
423 425 3.553095 AACCGCAAGAGGAGTGCCC 62.553 63.158 0.00 0.00 38.86 5.36
434 436 3.941657 GAGTGCCCGGTGTGAGAGC 62.942 68.421 0.00 0.00 0.00 4.09
437 439 3.695606 GCCCGGTGTGAGAGCTCA 61.696 66.667 17.77 0.00 37.24 4.26
452 454 1.134694 CTCATCGTCGTCGTGCTGA 59.865 57.895 1.33 3.77 38.33 4.26
458 460 0.165295 CGTCGTCGTGCTGAAGTAGA 59.835 55.000 0.00 0.00 0.00 2.59
464 466 0.244994 CGTGCTGAAGTAGAGGCAGT 59.755 55.000 0.00 0.00 35.29 4.40
473 475 1.304962 TAGAGGCAGTTGCTCGGGA 60.305 57.895 3.88 0.00 41.70 5.14
478 480 2.758089 GCAGTTGCTCGGGATGCTG 61.758 63.158 0.00 0.00 38.21 4.41
483 485 3.785859 GCTCGGGATGCTGGGTCA 61.786 66.667 0.00 0.00 0.00 4.02
491 493 0.980231 GATGCTGGGTCAGAGGAGGT 60.980 60.000 0.00 0.00 32.44 3.85
494 496 1.915266 CTGGGTCAGAGGAGGTGCA 60.915 63.158 0.00 0.00 32.44 4.57
502 504 0.835543 AGAGGAGGTGCAGCAACTCT 60.836 55.000 34.29 26.64 46.38 3.24
506 508 3.730761 GGTGCAGCAACTCTGGCG 61.731 66.667 11.86 0.00 43.06 5.69
557 559 4.529219 CATGTCGGGGCAGCGCTA 62.529 66.667 10.99 0.00 0.00 4.26
569 571 1.674651 AGCGCTACTGTCTCGGTGA 60.675 57.895 8.99 0.00 32.46 4.02
578 580 0.534203 TGTCTCGGTGAACCTTTGCC 60.534 55.000 0.00 0.00 0.00 4.52
579 581 0.534203 GTCTCGGTGAACCTTTGCCA 60.534 55.000 0.00 0.00 0.00 4.92
580 582 0.534203 TCTCGGTGAACCTTTGCCAC 60.534 55.000 0.00 0.00 0.00 5.01
581 583 0.817634 CTCGGTGAACCTTTGCCACA 60.818 55.000 0.00 0.00 32.79 4.17
582 584 0.394488 TCGGTGAACCTTTGCCACAA 60.394 50.000 0.00 0.00 32.79 3.33
583 585 0.030638 CGGTGAACCTTTGCCACAAG 59.969 55.000 0.00 0.00 32.79 3.16
584 586 0.389025 GGTGAACCTTTGCCACAAGG 59.611 55.000 5.14 5.14 41.87 3.61
587 589 4.599036 ACCTTTGCCACAAGGTCC 57.401 55.556 6.30 0.00 45.80 4.46
588 590 1.930520 ACCTTTGCCACAAGGTCCT 59.069 52.632 6.30 0.00 45.80 3.85
589 591 0.261696 ACCTTTGCCACAAGGTCCTT 59.738 50.000 0.00 0.00 45.80 3.36
590 592 0.675633 CCTTTGCCACAAGGTCCTTG 59.324 55.000 27.09 27.09 45.85 3.61
599 601 0.040067 CAAGGTCCTTGTTGCGAAGC 60.040 55.000 21.76 0.00 44.92 3.86
600 602 3.336111 CAAGGTCCTTGTTGCGAAGCC 62.336 57.143 21.76 0.00 44.43 4.35
620 622 1.740025 CCCTAAGTGCAACAAGCTAGC 59.260 52.381 6.62 6.62 45.94 3.42
627 629 3.373020 CAACAAGCTAGCTGTTGCG 57.627 52.632 29.82 17.73 45.42 4.85
634 636 1.362406 GCTAGCTGTTGCGAAGGTCC 61.362 60.000 7.70 0.00 45.42 4.46
637 639 2.383527 GCTGTTGCGAAGGTCCTCG 61.384 63.158 0.00 0.00 41.84 4.63
641 643 1.301401 TTGCGAAGGTCCTCGGTTG 60.301 57.895 11.20 0.00 39.27 3.77
645 647 1.376037 GAAGGTCCTCGGTTGGCTG 60.376 63.158 0.00 0.00 0.00 4.85
649 651 3.003173 TCCTCGGTTGGCTGGGAG 61.003 66.667 0.00 0.00 0.00 4.30
654 656 3.256960 GGTTGGCTGGGAGGGTGA 61.257 66.667 0.00 0.00 0.00 4.02
661 663 1.700042 GCTGGGAGGGTGAATCGGAT 61.700 60.000 0.00 0.00 0.00 4.18
670 672 1.818674 GGTGAATCGGATGGCTGTTTT 59.181 47.619 0.00 0.00 0.00 2.43
671 673 2.415893 GGTGAATCGGATGGCTGTTTTG 60.416 50.000 0.00 0.00 0.00 2.44
676 678 1.876497 CGGATGGCTGTTTTGGGTGG 61.876 60.000 0.00 0.00 0.00 4.61
681 683 1.470996 GGCTGTTTTGGGTGGCATCA 61.471 55.000 0.00 0.00 0.00 3.07
687 689 3.918253 TTGGGTGGCATCAGACGGC 62.918 63.158 0.00 0.00 0.00 5.68
690 692 3.503363 GTGGCATCAGACGGCTGC 61.503 66.667 15.33 1.98 42.01 5.25
725 727 4.790878 TCTAATCGATTTATCACCCGACG 58.209 43.478 17.19 0.00 33.69 5.12
728 730 1.958579 TCGATTTATCACCCGACGGAT 59.041 47.619 17.49 0.00 0.00 4.18
729 731 2.058798 CGATTTATCACCCGACGGATG 58.941 52.381 17.49 9.31 0.00 3.51
730 732 2.545113 CGATTTATCACCCGACGGATGT 60.545 50.000 17.49 2.05 0.00 3.06
731 733 2.303163 TTTATCACCCGACGGATGTG 57.697 50.000 17.49 15.93 0.00 3.21
732 734 0.179094 TTATCACCCGACGGATGTGC 60.179 55.000 17.49 0.00 0.00 4.57
733 735 1.324005 TATCACCCGACGGATGTGCA 61.324 55.000 17.49 6.66 0.00 4.57
734 736 2.578163 ATCACCCGACGGATGTGCAG 62.578 60.000 17.49 0.00 0.00 4.41
735 737 3.311110 ACCCGACGGATGTGCAGT 61.311 61.111 17.49 0.00 0.00 4.40
736 738 2.815211 CCCGACGGATGTGCAGTG 60.815 66.667 17.49 0.00 0.00 3.66
737 739 3.490759 CCGACGGATGTGCAGTGC 61.491 66.667 8.64 8.58 0.00 4.40
738 740 3.490759 CGACGGATGTGCAGTGCC 61.491 66.667 13.72 4.57 0.00 5.01
739 741 3.127533 GACGGATGTGCAGTGCCC 61.128 66.667 13.72 0.28 0.00 5.36
740 742 3.899981 GACGGATGTGCAGTGCCCA 62.900 63.158 13.72 7.92 0.00 5.36
741 743 3.129502 CGGATGTGCAGTGCCCAG 61.130 66.667 13.72 0.00 0.00 4.45
742 744 2.352422 GGATGTGCAGTGCCCAGA 59.648 61.111 13.72 0.00 0.00 3.86
743 745 1.748122 GGATGTGCAGTGCCCAGAG 60.748 63.158 13.72 0.00 0.00 3.35
744 746 1.002868 GATGTGCAGTGCCCAGAGT 60.003 57.895 13.72 0.00 0.00 3.24
745 747 0.250234 GATGTGCAGTGCCCAGAGTA 59.750 55.000 13.72 0.00 0.00 2.59
746 748 0.914644 ATGTGCAGTGCCCAGAGTAT 59.085 50.000 13.72 0.00 0.00 2.12
747 749 1.567357 TGTGCAGTGCCCAGAGTATA 58.433 50.000 13.72 0.00 0.00 1.47
748 750 1.905894 TGTGCAGTGCCCAGAGTATAA 59.094 47.619 13.72 0.00 0.00 0.98
749 751 2.505407 TGTGCAGTGCCCAGAGTATAAT 59.495 45.455 13.72 0.00 0.00 1.28
750 752 3.709141 TGTGCAGTGCCCAGAGTATAATA 59.291 43.478 13.72 0.00 0.00 0.98
751 753 4.058817 GTGCAGTGCCCAGAGTATAATAC 58.941 47.826 13.72 0.00 0.00 1.89
752 754 3.709141 TGCAGTGCCCAGAGTATAATACA 59.291 43.478 13.72 0.00 0.00 2.29
753 755 4.058817 GCAGTGCCCAGAGTATAATACAC 58.941 47.826 2.85 0.00 0.00 2.90
754 756 4.442893 GCAGTGCCCAGAGTATAATACACA 60.443 45.833 2.85 0.00 0.00 3.72
755 757 5.670485 CAGTGCCCAGAGTATAATACACAA 58.330 41.667 0.00 0.00 0.00 3.33
756 758 6.112734 CAGTGCCCAGAGTATAATACACAAA 58.887 40.000 0.00 0.00 0.00 2.83
757 759 6.597672 CAGTGCCCAGAGTATAATACACAAAA 59.402 38.462 0.00 0.00 0.00 2.44
758 760 7.120579 CAGTGCCCAGAGTATAATACACAAAAA 59.879 37.037 0.00 0.00 0.00 1.94
780 782 5.751243 AATATTTCATGGAACGCACTACC 57.249 39.130 0.00 0.00 0.00 3.18
781 783 1.816074 TTTCATGGAACGCACTACCC 58.184 50.000 0.00 0.00 0.00 3.69
782 784 0.035820 TTCATGGAACGCACTACCCC 60.036 55.000 0.00 0.00 0.00 4.95
783 785 0.907704 TCATGGAACGCACTACCCCT 60.908 55.000 0.00 0.00 0.00 4.79
784 786 0.462047 CATGGAACGCACTACCCCTC 60.462 60.000 0.00 0.00 0.00 4.30
785 787 0.907704 ATGGAACGCACTACCCCTCA 60.908 55.000 0.00 0.00 0.00 3.86
786 788 1.122632 TGGAACGCACTACCCCTCAA 61.123 55.000 0.00 0.00 0.00 3.02
787 789 0.035739 GGAACGCACTACCCCTCAAA 59.964 55.000 0.00 0.00 0.00 2.69
788 790 1.339727 GGAACGCACTACCCCTCAAAT 60.340 52.381 0.00 0.00 0.00 2.32
789 791 2.433436 GAACGCACTACCCCTCAAATT 58.567 47.619 0.00 0.00 0.00 1.82
790 792 2.579410 ACGCACTACCCCTCAAATTT 57.421 45.000 0.00 0.00 0.00 1.82
791 793 2.871453 ACGCACTACCCCTCAAATTTT 58.129 42.857 0.00 0.00 0.00 1.82
792 794 2.556622 ACGCACTACCCCTCAAATTTTG 59.443 45.455 2.59 2.59 0.00 2.44
793 795 2.817258 CGCACTACCCCTCAAATTTTGA 59.183 45.455 11.19 11.19 38.17 2.69
794 796 3.254657 CGCACTACCCCTCAAATTTTGAA 59.745 43.478 12.62 0.00 39.58 2.69
795 797 4.261825 CGCACTACCCCTCAAATTTTGAAA 60.262 41.667 12.62 0.00 39.58 2.69
796 798 5.606505 GCACTACCCCTCAAATTTTGAAAA 58.393 37.500 12.62 0.00 39.58 2.29
797 799 6.052360 GCACTACCCCTCAAATTTTGAAAAA 58.948 36.000 12.62 0.00 39.58 1.94
885 901 0.732196 CAGTGTGCTGAGACGAGAGC 60.732 60.000 0.00 0.00 45.28 4.09
890 906 2.109739 GCTGAGACGAGAGCCGAGA 61.110 63.158 0.00 0.00 41.76 4.04
896 912 2.312398 GACGAGAGCCGAGACGAAGG 62.312 65.000 0.00 0.00 41.76 3.46
915 931 1.228675 CAGCCAAAACTGCCCTCCT 60.229 57.895 0.00 0.00 0.00 3.69
919 935 0.322906 CCAAAACTGCCCTCCTCTCC 60.323 60.000 0.00 0.00 0.00 3.71
920 936 0.695347 CAAAACTGCCCTCCTCTCCT 59.305 55.000 0.00 0.00 0.00 3.69
921 937 0.988063 AAAACTGCCCTCCTCTCCTC 59.012 55.000 0.00 0.00 0.00 3.71
922 938 0.912006 AAACTGCCCTCCTCTCCTCC 60.912 60.000 0.00 0.00 0.00 4.30
923 939 1.820866 AACTGCCCTCCTCTCCTCCT 61.821 60.000 0.00 0.00 0.00 3.69
924 940 1.457455 CTGCCCTCCTCTCCTCCTC 60.457 68.421 0.00 0.00 0.00 3.71
995 1014 2.972505 CGGCAACTGCGTGACCTT 60.973 61.111 0.00 0.00 43.26 3.50
1000 1019 1.598130 AACTGCGTGACCTTCTGCC 60.598 57.895 0.00 0.00 0.00 4.85
1014 1033 0.923729 TCTGCCCTCCTCTCCTCTCT 60.924 60.000 0.00 0.00 0.00 3.10
1015 1034 0.756442 CTGCCCTCCTCTCCTCTCTG 60.756 65.000 0.00 0.00 0.00 3.35
1492 1529 2.047274 CCTTGTCGTCCATGGCGT 60.047 61.111 22.22 0.00 32.19 5.68
1543 1588 1.201921 CCGTTCGTTGCAGCAATCTAC 60.202 52.381 11.96 8.53 0.00 2.59
1544 1589 1.726791 CGTTCGTTGCAGCAATCTACT 59.273 47.619 11.96 0.00 0.00 2.57
1545 1590 2.472886 CGTTCGTTGCAGCAATCTACTG 60.473 50.000 11.96 0.00 38.22 2.74
1546 1591 2.455674 TCGTTGCAGCAATCTACTGT 57.544 45.000 11.96 0.00 37.47 3.55
1547 1592 3.586100 TCGTTGCAGCAATCTACTGTA 57.414 42.857 11.96 0.00 37.47 2.74
1563 1608 7.192148 TCTACTGTAGTTCTAATCGATGCTC 57.808 40.000 14.11 0.00 0.00 4.26
1572 1617 1.359848 AATCGATGCTCGTTGGTGTC 58.640 50.000 0.00 0.00 41.35 3.67
2229 2293 6.128634 GCAATCTCAAAGCCTCTTTTGAATTG 60.129 38.462 18.73 18.73 44.06 2.32
2230 2294 6.906157 ATCTCAAAGCCTCTTTTGAATTGA 57.094 33.333 3.20 0.00 44.06 2.57
2237 2301 6.409524 AGCCTCTTTTGAATTGATGAAACA 57.590 33.333 0.00 0.00 0.00 2.83
2281 2345 6.763135 TCTCGCGACTTAGGTTAGTAAATCTA 59.237 38.462 3.71 0.00 0.00 1.98
2317 2381 9.950496 AAGAGCATAAAGACTTTCATTCTAGAA 57.050 29.630 7.82 7.82 0.00 2.10
2346 2410 7.936496 TTCAAAAATCCAAAAAGCCTTTTCT 57.064 28.000 2.34 0.00 32.24 2.52
2347 2411 9.454859 TTTCAAAAATCCAAAAAGCCTTTTCTA 57.545 25.926 2.34 0.00 32.24 2.10
2348 2412 9.625747 TTCAAAAATCCAAAAAGCCTTTTCTAT 57.374 25.926 2.34 0.00 32.24 1.98
2349 2413 9.625747 TCAAAAATCCAAAAAGCCTTTTCTATT 57.374 25.926 2.34 1.45 32.24 1.73
2354 2418 9.890629 AATCCAAAAAGCCTTTTCTATTTATCC 57.109 29.630 2.34 0.00 32.24 2.59
2355 2419 8.429237 TCCAAAAAGCCTTTTCTATTTATCCA 57.571 30.769 2.34 0.00 32.24 3.41
2499 2615 7.898014 AAAAATAAGTCCAACTCTTCCAAGT 57.102 32.000 0.00 0.00 0.00 3.16
2502 2618 3.686916 AGTCCAACTCTTCCAAGTAGC 57.313 47.619 0.00 0.00 0.00 3.58
2511 2627 6.038997 ACTCTTCCAAGTAGCGTTTCTATT 57.961 37.500 0.00 0.00 0.00 1.73
2512 2628 5.869888 ACTCTTCCAAGTAGCGTTTCTATTG 59.130 40.000 0.00 0.00 0.00 1.90
2517 2633 2.906354 AGTAGCGTTTCTATTGGGCAG 58.094 47.619 0.00 0.00 0.00 4.85
2518 2634 1.330829 GTAGCGTTTCTATTGGGCAGC 59.669 52.381 0.00 0.00 0.00 5.25
2521 3607 1.067915 GCGTTTCTATTGGGCAGCAAA 60.068 47.619 0.00 0.00 0.00 3.68
2532 3618 1.613437 GGGCAGCAAAGCAAGAGTTTA 59.387 47.619 0.00 0.00 35.83 2.01
2534 3620 3.306294 GGGCAGCAAAGCAAGAGTTTATT 60.306 43.478 0.00 0.00 35.83 1.40
2537 3623 5.460646 GCAGCAAAGCAAGAGTTTATTGTA 58.539 37.500 0.00 0.00 0.00 2.41
2611 3698 8.502105 ACTCTAACGTTCCTAAATTTTATGGG 57.498 34.615 2.82 0.00 0.00 4.00
2612 3699 7.066645 ACTCTAACGTTCCTAAATTTTATGGGC 59.933 37.037 2.82 0.00 0.00 5.36
2638 3725 0.322997 AAAATCCACGATTCCCGGCA 60.323 50.000 0.00 0.00 43.93 5.69
2648 3751 2.661594 GATTCCCGGCAATAATTTCGC 58.338 47.619 0.00 0.00 0.00 4.70
2654 3757 2.416701 CCGGCAATAATTTCGCCTGTTT 60.417 45.455 9.85 0.00 43.95 2.83
2657 3760 4.673061 CGGCAATAATTTCGCCTGTTTGTA 60.673 41.667 9.85 0.00 43.95 2.41
2669 3772 0.455802 TGTTTGTATGCGGCATTGCG 60.456 50.000 21.99 0.00 37.81 4.85
2699 3802 0.108756 GAGCGGAAAGGAAGCGTACT 60.109 55.000 0.00 0.00 35.78 2.73
2701 3804 1.967597 GCGGAAAGGAAGCGTACTGC 61.968 60.000 2.08 2.08 46.98 4.40
2811 3914 0.725117 GCTGGAATCAAACCGTACCG 59.275 55.000 0.00 0.00 0.00 4.02
2878 3982 0.248825 CGAGGCTCCAGATGAACTCG 60.249 60.000 9.32 0.00 41.26 4.18
2905 4009 6.571537 GCCCGTTTTGAATTTTCAGGAAGATA 60.572 38.462 1.02 0.00 38.61 1.98
3089 4228 4.347453 GCCGTTGCCACTTGCCAG 62.347 66.667 0.00 0.00 40.16 4.85
3264 4403 3.953775 CCGCACAAGGGTCAGGGT 61.954 66.667 0.00 0.00 0.00 4.34
3265 4404 2.358737 CGCACAAGGGTCAGGGTC 60.359 66.667 0.00 0.00 0.00 4.46
3266 4405 2.836154 GCACAAGGGTCAGGGTCA 59.164 61.111 0.00 0.00 0.00 4.02
3268 4407 1.376466 CACAAGGGTCAGGGTCAGG 59.624 63.158 0.00 0.00 0.00 3.86
3269 4408 1.847968 ACAAGGGTCAGGGTCAGGG 60.848 63.158 0.00 0.00 0.00 4.45
3270 4409 1.847968 CAAGGGTCAGGGTCAGGGT 60.848 63.158 0.00 0.00 0.00 4.34
3271 4410 1.539124 AAGGGTCAGGGTCAGGGTC 60.539 63.158 0.00 0.00 0.00 4.46
3272 4411 2.203938 GGGTCAGGGTCAGGGTCA 60.204 66.667 0.00 0.00 0.00 4.02
3273 4412 2.593956 GGGTCAGGGTCAGGGTCAC 61.594 68.421 0.00 0.00 0.00 3.67
3274 4413 2.657237 GTCAGGGTCAGGGTCACG 59.343 66.667 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.406173 AGACGGACTCTGCGCGTG 62.406 66.667 8.43 0.68 33.30 5.34
7 8 4.104417 GAGACGGACTCTGCGCGT 62.104 66.667 8.43 0.00 41.94 6.01
9 10 3.444805 AGGAGACGGACTCTGCGC 61.445 66.667 0.00 0.00 42.19 6.09
10 11 2.487428 CAGGAGACGGACTCTGCG 59.513 66.667 7.38 0.00 42.19 5.18
11 12 2.183046 GCAGGAGACGGACTCTGC 59.817 66.667 7.38 10.54 44.37 4.26
12 13 1.025113 TACGCAGGAGACGGACTCTG 61.025 60.000 7.38 5.35 44.37 3.35
13 14 0.745128 CTACGCAGGAGACGGACTCT 60.745 60.000 7.38 0.00 44.37 3.24
14 15 1.722677 CTACGCAGGAGACGGACTC 59.277 63.158 0.00 0.00 44.24 3.36
15 16 2.408241 GCTACGCAGGAGACGGACT 61.408 63.158 0.00 0.00 34.00 3.85
16 17 1.094073 TAGCTACGCAGGAGACGGAC 61.094 60.000 0.00 0.00 34.00 4.79
17 18 0.179026 ATAGCTACGCAGGAGACGGA 60.179 55.000 0.00 0.00 34.00 4.69
18 19 0.238817 GATAGCTACGCAGGAGACGG 59.761 60.000 0.00 0.00 34.00 4.79
19 20 0.945099 TGATAGCTACGCAGGAGACG 59.055 55.000 0.00 0.00 0.00 4.18
20 21 3.438297 TTTGATAGCTACGCAGGAGAC 57.562 47.619 0.00 0.00 0.00 3.36
21 22 3.304726 CGATTTGATAGCTACGCAGGAGA 60.305 47.826 0.00 0.00 0.00 3.71
22 23 2.983136 CGATTTGATAGCTACGCAGGAG 59.017 50.000 0.00 0.00 0.00 3.69
23 24 2.621526 TCGATTTGATAGCTACGCAGGA 59.378 45.455 0.00 0.00 0.00 3.86
24 25 3.013276 TCGATTTGATAGCTACGCAGG 57.987 47.619 0.00 0.00 0.00 4.85
25 26 5.582439 AAATCGATTTGATAGCTACGCAG 57.418 39.130 22.16 0.00 35.84 5.18
26 27 5.984233 AAAATCGATTTGATAGCTACGCA 57.016 34.783 23.38 0.00 35.84 5.24
38 39 6.258230 TGAGCACTTGATCAAAATCGATTT 57.742 33.333 17.60 17.60 37.53 2.17
39 40 5.163683 CCTGAGCACTTGATCAAAATCGATT 60.164 40.000 9.88 4.39 40.20 3.34
40 41 4.334759 CCTGAGCACTTGATCAAAATCGAT 59.665 41.667 9.88 0.00 40.20 3.59
41 42 3.686241 CCTGAGCACTTGATCAAAATCGA 59.314 43.478 9.88 0.00 40.20 3.59
42 43 3.730061 GCCTGAGCACTTGATCAAAATCG 60.730 47.826 9.88 0.06 40.20 3.34
43 44 3.192001 TGCCTGAGCACTTGATCAAAATC 59.808 43.478 9.88 5.87 46.52 2.17
44 45 3.159472 TGCCTGAGCACTTGATCAAAAT 58.841 40.909 9.88 0.00 46.52 1.82
45 46 2.585330 TGCCTGAGCACTTGATCAAAA 58.415 42.857 9.88 0.00 46.52 2.44
46 47 2.275134 TGCCTGAGCACTTGATCAAA 57.725 45.000 9.88 0.00 46.52 2.69
57 58 1.723870 CCAGCGTAATTGCCTGAGC 59.276 57.895 11.64 0.00 40.48 4.26
58 59 1.718757 GGCCAGCGTAATTGCCTGAG 61.719 60.000 0.00 5.46 40.77 3.35
59 60 1.748879 GGCCAGCGTAATTGCCTGA 60.749 57.895 0.00 0.00 40.77 3.86
60 61 2.045708 TGGCCAGCGTAATTGCCTG 61.046 57.895 0.00 4.85 44.32 4.85
61 62 2.046285 GTGGCCAGCGTAATTGCCT 61.046 57.895 5.11 0.00 44.32 4.75
62 63 2.489751 GTGGCCAGCGTAATTGCC 59.510 61.111 5.11 0.00 44.27 4.52
63 64 2.270297 CTGGTGGCCAGCGTAATTGC 62.270 60.000 28.67 2.84 45.13 3.56
64 65 1.802636 CTGGTGGCCAGCGTAATTG 59.197 57.895 28.67 11.17 45.13 2.32
65 66 4.319133 CTGGTGGCCAGCGTAATT 57.681 55.556 28.67 0.00 45.13 1.40
74 75 4.722700 ATGCACGGACTGGTGGCC 62.723 66.667 0.00 0.00 38.36 5.36
75 76 2.796483 TACATGCACGGACTGGTGGC 62.796 60.000 0.00 0.00 38.36 5.01
76 77 0.740868 CTACATGCACGGACTGGTGG 60.741 60.000 0.00 0.00 38.36 4.61
77 78 0.740868 CCTACATGCACGGACTGGTG 60.741 60.000 0.00 0.00 40.89 4.17
78 79 1.596934 CCTACATGCACGGACTGGT 59.403 57.895 0.00 0.00 0.00 4.00
79 80 1.153369 CCCTACATGCACGGACTGG 60.153 63.158 0.00 0.00 0.00 4.00
80 81 0.036388 AACCCTACATGCACGGACTG 60.036 55.000 0.00 0.00 0.00 3.51
81 82 0.690762 AAACCCTACATGCACGGACT 59.309 50.000 0.00 0.00 0.00 3.85
82 83 1.084289 GAAACCCTACATGCACGGAC 58.916 55.000 0.00 0.00 0.00 4.79
83 84 0.981183 AGAAACCCTACATGCACGGA 59.019 50.000 0.00 0.00 0.00 4.69
84 85 1.821216 AAGAAACCCTACATGCACGG 58.179 50.000 0.00 0.00 0.00 4.94
85 86 3.564511 CAAAAGAAACCCTACATGCACG 58.435 45.455 0.00 0.00 0.00 5.34
86 87 3.243704 TGCAAAAGAAACCCTACATGCAC 60.244 43.478 0.00 0.00 34.82 4.57
87 88 2.961741 TGCAAAAGAAACCCTACATGCA 59.038 40.909 0.00 0.00 36.29 3.96
88 89 3.658757 TGCAAAAGAAACCCTACATGC 57.341 42.857 0.00 0.00 0.00 4.06
89 90 4.984161 CAGTTGCAAAAGAAACCCTACATG 59.016 41.667 0.00 0.00 0.00 3.21
90 91 4.649218 ACAGTTGCAAAAGAAACCCTACAT 59.351 37.500 0.00 0.00 0.00 2.29
91 92 4.020543 ACAGTTGCAAAAGAAACCCTACA 58.979 39.130 0.00 0.00 0.00 2.74
92 93 4.649088 ACAGTTGCAAAAGAAACCCTAC 57.351 40.909 0.00 0.00 0.00 3.18
93 94 5.186021 TGAAACAGTTGCAAAAGAAACCCTA 59.814 36.000 0.00 0.00 0.00 3.53
94 95 4.020662 TGAAACAGTTGCAAAAGAAACCCT 60.021 37.500 0.00 0.00 0.00 4.34
95 96 4.249661 TGAAACAGTTGCAAAAGAAACCC 58.750 39.130 0.00 0.00 0.00 4.11
96 97 5.167845 TCTGAAACAGTTGCAAAAGAAACC 58.832 37.500 0.00 0.00 32.61 3.27
97 98 6.183360 CCTTCTGAAACAGTTGCAAAAGAAAC 60.183 38.462 8.77 0.00 32.61 2.78
98 99 5.868801 CCTTCTGAAACAGTTGCAAAAGAAA 59.131 36.000 8.77 0.00 32.61 2.52
99 100 5.047377 ACCTTCTGAAACAGTTGCAAAAGAA 60.047 36.000 8.77 2.23 32.61 2.52
100 101 4.462483 ACCTTCTGAAACAGTTGCAAAAGA 59.538 37.500 8.77 0.00 32.61 2.52
101 102 4.747810 ACCTTCTGAAACAGTTGCAAAAG 58.252 39.130 0.00 0.57 32.61 2.27
102 103 4.799564 ACCTTCTGAAACAGTTGCAAAA 57.200 36.364 0.00 0.00 32.61 2.44
103 104 4.799564 AACCTTCTGAAACAGTTGCAAA 57.200 36.364 0.00 0.00 32.61 3.68
104 105 4.462483 AGAAACCTTCTGAAACAGTTGCAA 59.538 37.500 0.00 0.00 38.91 4.08
105 106 4.016444 AGAAACCTTCTGAAACAGTTGCA 58.984 39.130 0.00 0.00 38.91 4.08
106 107 4.639135 AGAAACCTTCTGAAACAGTTGC 57.361 40.909 0.00 0.00 38.91 4.17
107 108 6.677781 TGTAGAAACCTTCTGAAACAGTTG 57.322 37.500 0.00 0.00 40.94 3.16
108 109 5.297029 GCTGTAGAAACCTTCTGAAACAGTT 59.703 40.000 14.22 6.28 42.10 3.16
109 110 4.816925 GCTGTAGAAACCTTCTGAAACAGT 59.183 41.667 14.22 1.24 42.10 3.55
110 111 4.816385 TGCTGTAGAAACCTTCTGAAACAG 59.184 41.667 10.33 10.33 42.59 3.16
111 112 4.776349 TGCTGTAGAAACCTTCTGAAACA 58.224 39.130 0.00 0.00 40.94 2.83
112 113 5.057149 TCTGCTGTAGAAACCTTCTGAAAC 58.943 41.667 0.00 0.00 40.94 2.78
128 129 6.959639 TTCTGAAAATAAAACCTCTGCTGT 57.040 33.333 0.00 0.00 0.00 4.40
146 147 8.681806 TCAACACACATCTGTTTTATTTTCTGA 58.318 29.630 0.00 0.00 31.73 3.27
147 148 8.854979 TCAACACACATCTGTTTTATTTTCTG 57.145 30.769 0.00 0.00 31.73 3.02
148 149 9.520204 CTTCAACACACATCTGTTTTATTTTCT 57.480 29.630 0.00 0.00 31.73 2.52
149 150 9.301153 ACTTCAACACACATCTGTTTTATTTTC 57.699 29.630 0.00 0.00 31.73 2.29
151 152 9.651913 AAACTTCAACACACATCTGTTTTATTT 57.348 25.926 0.00 0.00 31.73 1.40
152 153 9.651913 AAAACTTCAACACACATCTGTTTTATT 57.348 25.926 0.00 0.00 35.51 1.40
153 154 9.651913 AAAAACTTCAACACACATCTGTTTTAT 57.348 25.926 0.00 0.00 36.00 1.40
179 180 6.403049 TCTAAAACTAGATCATGTTGCCGAA 58.597 36.000 0.00 0.00 0.00 4.30
182 183 9.860898 AATTTTCTAAAACTAGATCATGTTGCC 57.139 29.630 0.00 0.00 0.00 4.52
196 197 9.914131 ACCTCTATTGCAGAAATTTTCTAAAAC 57.086 29.630 11.21 3.24 38.11 2.43
200 201 8.950210 CAAGACCTCTATTGCAGAAATTTTCTA 58.050 33.333 11.21 0.00 38.11 2.10
206 207 6.716628 TGAAACAAGACCTCTATTGCAGAAAT 59.283 34.615 0.00 0.00 31.12 2.17
216 217 9.238368 TCTTTTCTTTTTGAAACAAGACCTCTA 57.762 29.630 3.27 0.00 43.55 2.43
236 237 4.622740 CACTGCCGATCCATTTTTCTTTTC 59.377 41.667 0.00 0.00 0.00 2.29
241 242 3.440173 TCTTCACTGCCGATCCATTTTTC 59.560 43.478 0.00 0.00 0.00 2.29
244 245 2.787473 TCTTCACTGCCGATCCATTT 57.213 45.000 0.00 0.00 0.00 2.32
245 246 3.287867 AATCTTCACTGCCGATCCATT 57.712 42.857 0.00 0.00 0.00 3.16
246 247 3.287867 AAATCTTCACTGCCGATCCAT 57.712 42.857 0.00 0.00 0.00 3.41
247 248 2.787473 AAATCTTCACTGCCGATCCA 57.213 45.000 0.00 0.00 0.00 3.41
248 249 3.691609 AGAAAAATCTTCACTGCCGATCC 59.308 43.478 0.00 0.00 0.00 3.36
249 250 4.954092 AGAAAAATCTTCACTGCCGATC 57.046 40.909 0.00 0.00 0.00 3.69
250 251 5.712152 AAAGAAAAATCTTCACTGCCGAT 57.288 34.783 0.00 0.00 0.00 4.18
252 253 4.084900 GCAAAAGAAAAATCTTCACTGCCG 60.085 41.667 8.13 0.00 0.00 5.69
253 254 4.810491 TGCAAAAGAAAAATCTTCACTGCC 59.190 37.500 13.24 2.90 33.00 4.85
255 256 7.293402 TGTTGCAAAAGAAAAATCTTCACTG 57.707 32.000 0.00 0.00 0.00 3.66
256 257 7.064966 CCTTGTTGCAAAAGAAAAATCTTCACT 59.935 33.333 17.53 0.00 0.00 3.41
272 274 2.495270 TGAAACAAGAGCCTTGTTGCAA 59.505 40.909 26.47 16.31 43.02 4.08
279 281 4.677673 ATGCTTTTGAAACAAGAGCCTT 57.322 36.364 19.06 8.38 32.53 4.35
280 282 5.105595 GGATATGCTTTTGAAACAAGAGCCT 60.106 40.000 19.06 13.95 32.53 4.58
297 299 2.057137 TTCTGCAACCTGGGATATGC 57.943 50.000 0.00 3.93 39.22 3.14
306 308 1.961277 CCGACGCTTTCTGCAACCT 60.961 57.895 0.00 0.00 43.06 3.50
308 310 0.944311 TCTCCGACGCTTTCTGCAAC 60.944 55.000 0.00 0.00 43.06 4.17
312 314 1.063806 CACTTCTCCGACGCTTTCTG 58.936 55.000 0.00 0.00 0.00 3.02
324 326 0.606604 TCTAACACCGGGCACTTCTC 59.393 55.000 6.32 0.00 0.00 2.87
327 329 1.003718 GCTCTAACACCGGGCACTT 60.004 57.895 6.32 0.00 0.00 3.16
330 332 0.177141 GTATGCTCTAACACCGGGCA 59.823 55.000 6.32 3.64 37.32 5.36
334 336 1.404391 ACCTCGTATGCTCTAACACCG 59.596 52.381 0.00 0.00 0.00 4.94
338 340 3.053455 GCATCACCTCGTATGCTCTAAC 58.947 50.000 0.00 0.00 44.08 2.34
341 343 1.114627 TGCATCACCTCGTATGCTCT 58.885 50.000 8.57 0.00 46.87 4.09
351 353 0.806868 CGTCTTGCAATGCATCACCT 59.193 50.000 9.39 0.00 38.76 4.00
357 359 2.644418 GCACCGTCTTGCAATGCA 59.356 55.556 15.31 2.72 42.49 3.96
367 369 2.032799 TGTTTCTGAAACATGCACCGTC 59.967 45.455 27.14 3.04 45.79 4.79
381 383 6.732531 TCTGCAACTGAATCTATGTTTCTG 57.267 37.500 0.00 0.00 0.00 3.02
392 394 1.317613 TGCGGTTTCTGCAACTGAAT 58.682 45.000 3.13 0.00 43.78 2.57
394 396 0.662619 CTTGCGGTTTCTGCAACTGA 59.337 50.000 11.25 0.00 46.62 3.41
395 397 0.662619 TCTTGCGGTTTCTGCAACTG 59.337 50.000 11.25 4.52 46.62 3.16
402 404 0.603975 GCACTCCTCTTGCGGTTTCT 60.604 55.000 0.00 0.00 0.00 2.52
411 413 2.526873 ACACCGGGCACTCCTCTT 60.527 61.111 6.32 0.00 0.00 2.85
415 417 3.302347 CTCTCACACCGGGCACTCC 62.302 68.421 6.32 0.00 0.00 3.85
423 425 0.524392 GACGATGAGCTCTCACACCG 60.524 60.000 16.19 11.03 43.11 4.94
424 426 0.524392 CGACGATGAGCTCTCACACC 60.524 60.000 16.19 0.00 43.11 4.16
434 436 0.454452 TTCAGCACGACGACGATGAG 60.454 55.000 15.32 5.59 42.66 2.90
437 439 0.800631 TACTTCAGCACGACGACGAT 59.199 50.000 15.32 0.00 42.66 3.73
452 454 0.247736 CCGAGCAACTGCCTCTACTT 59.752 55.000 0.00 0.00 43.38 2.24
458 460 2.270205 CATCCCGAGCAACTGCCT 59.730 61.111 0.00 0.00 43.38 4.75
464 466 3.329542 GACCCAGCATCCCGAGCAA 62.330 63.158 0.00 0.00 0.00 3.91
473 475 1.081833 ACCTCCTCTGACCCAGCAT 59.918 57.895 0.00 0.00 0.00 3.79
478 480 2.985456 CTGCACCTCCTCTGACCC 59.015 66.667 0.00 0.00 0.00 4.46
483 485 0.835543 AGAGTTGCTGCACCTCCTCT 60.836 55.000 21.51 16.22 0.00 3.69
551 553 1.241990 TTCACCGAGACAGTAGCGCT 61.242 55.000 17.26 17.26 0.00 5.92
555 557 3.318017 CAAAGGTTCACCGAGACAGTAG 58.682 50.000 0.00 0.00 42.08 2.57
557 559 1.810412 GCAAAGGTTCACCGAGACAGT 60.810 52.381 0.00 0.00 42.08 3.55
580 582 0.040067 GCTTCGCAACAAGGACCTTG 60.040 55.000 29.13 29.13 45.85 3.61
581 583 1.172812 GGCTTCGCAACAAGGACCTT 61.173 55.000 0.00 0.00 0.00 3.50
582 584 1.600916 GGCTTCGCAACAAGGACCT 60.601 57.895 0.00 0.00 0.00 3.85
583 585 2.626780 GGGCTTCGCAACAAGGACC 61.627 63.158 0.00 0.00 0.00 4.46
584 586 2.626780 GGGGCTTCGCAACAAGGAC 61.627 63.158 0.00 0.00 0.00 3.85
585 587 1.485294 TAGGGGCTTCGCAACAAGGA 61.485 55.000 0.00 0.00 0.00 3.36
586 588 0.608035 TTAGGGGCTTCGCAACAAGG 60.608 55.000 0.00 0.00 0.00 3.61
587 589 0.804989 CTTAGGGGCTTCGCAACAAG 59.195 55.000 0.00 0.00 0.00 3.16
588 590 0.109723 ACTTAGGGGCTTCGCAACAA 59.890 50.000 0.00 0.00 0.00 2.83
589 591 0.605319 CACTTAGGGGCTTCGCAACA 60.605 55.000 0.00 0.00 0.00 3.33
590 592 1.923227 GCACTTAGGGGCTTCGCAAC 61.923 60.000 0.00 0.00 0.00 4.17
591 593 1.674322 GCACTTAGGGGCTTCGCAA 60.674 57.895 0.00 0.00 0.00 4.85
592 594 2.046314 GCACTTAGGGGCTTCGCA 60.046 61.111 0.00 0.00 0.00 5.10
593 595 1.674322 TTGCACTTAGGGGCTTCGC 60.674 57.895 0.00 0.00 0.00 4.70
594 596 0.605319 TGTTGCACTTAGGGGCTTCG 60.605 55.000 0.00 0.00 0.00 3.79
595 597 1.541588 CTTGTTGCACTTAGGGGCTTC 59.458 52.381 0.00 0.00 0.00 3.86
596 598 1.620822 CTTGTTGCACTTAGGGGCTT 58.379 50.000 0.00 0.00 0.00 4.35
597 599 0.895559 GCTTGTTGCACTTAGGGGCT 60.896 55.000 0.00 0.00 42.31 5.19
598 600 0.895559 AGCTTGTTGCACTTAGGGGC 60.896 55.000 0.00 0.00 45.94 5.80
599 601 2.359900 CTAGCTTGTTGCACTTAGGGG 58.640 52.381 0.00 0.00 45.94 4.79
600 602 1.740025 GCTAGCTTGTTGCACTTAGGG 59.260 52.381 7.70 0.00 45.94 3.53
601 603 2.417933 CAGCTAGCTTGTTGCACTTAGG 59.582 50.000 16.46 0.00 45.94 2.69
602 604 3.070018 ACAGCTAGCTTGTTGCACTTAG 58.930 45.455 16.46 1.26 45.94 2.18
603 605 3.126001 ACAGCTAGCTTGTTGCACTTA 57.874 42.857 16.46 0.00 45.94 2.24
604 606 1.972872 ACAGCTAGCTTGTTGCACTT 58.027 45.000 16.46 0.00 45.94 3.16
605 607 1.605710 CAACAGCTAGCTTGTTGCACT 59.394 47.619 29.82 12.08 45.94 4.40
606 608 2.042104 CAACAGCTAGCTTGTTGCAC 57.958 50.000 29.82 0.00 45.94 4.57
620 622 1.738099 CCGAGGACCTTCGCAACAG 60.738 63.158 0.00 0.00 39.19 3.16
627 629 1.376037 CAGCCAACCGAGGACCTTC 60.376 63.158 0.00 0.00 0.00 3.46
634 636 4.101448 CCCTCCCAGCCAACCGAG 62.101 72.222 0.00 0.00 0.00 4.63
637 639 2.155197 ATTCACCCTCCCAGCCAACC 62.155 60.000 0.00 0.00 0.00 3.77
641 643 2.190578 CGATTCACCCTCCCAGCC 59.809 66.667 0.00 0.00 0.00 4.85
645 647 1.451936 CCATCCGATTCACCCTCCC 59.548 63.158 0.00 0.00 0.00 4.30
649 651 0.394352 AACAGCCATCCGATTCACCC 60.394 55.000 0.00 0.00 0.00 4.61
654 656 1.185315 CCCAAAACAGCCATCCGATT 58.815 50.000 0.00 0.00 0.00 3.34
661 663 1.459158 ATGCCACCCAAAACAGCCA 60.459 52.632 0.00 0.00 0.00 4.75
670 672 4.408821 GCCGTCTGATGCCACCCA 62.409 66.667 0.00 0.00 0.00 4.51
671 673 4.101448 AGCCGTCTGATGCCACCC 62.101 66.667 0.00 0.00 0.00 4.61
690 692 5.464588 ATCGATTAGATCAACCGCCTCGG 62.465 52.174 3.42 3.42 44.24 4.63
696 698 6.090898 GGGTGATAAATCGATTAGATCAACCG 59.909 42.308 33.12 0.00 38.88 4.44
725 727 1.748122 CTCTGGGCACTGCACATCC 60.748 63.158 6.38 0.00 42.76 3.51
728 730 1.567357 TATACTCTGGGCACTGCACA 58.433 50.000 5.67 5.67 40.85 4.57
729 731 2.691409 TTATACTCTGGGCACTGCAC 57.309 50.000 2.82 0.00 0.00 4.57
730 732 3.709141 TGTATTATACTCTGGGCACTGCA 59.291 43.478 2.82 0.00 0.00 4.41
731 733 4.058817 GTGTATTATACTCTGGGCACTGC 58.941 47.826 3.92 0.00 0.00 4.40
732 734 5.276461 TGTGTATTATACTCTGGGCACTG 57.724 43.478 3.92 0.00 0.00 3.66
733 735 5.950544 TTGTGTATTATACTCTGGGCACT 57.049 39.130 3.92 0.00 0.00 4.40
734 736 6.995511 TTTTGTGTATTATACTCTGGGCAC 57.004 37.500 3.92 0.00 0.00 5.01
755 757 7.033185 GGTAGTGCGTTCCATGAAATATTTTT 58.967 34.615 1.43 0.00 0.00 1.94
756 758 6.405397 GGGTAGTGCGTTCCATGAAATATTTT 60.405 38.462 1.43 0.00 0.00 1.82
757 759 5.067283 GGGTAGTGCGTTCCATGAAATATTT 59.933 40.000 0.00 0.00 0.00 1.40
758 760 4.578928 GGGTAGTGCGTTCCATGAAATATT 59.421 41.667 0.00 0.00 0.00 1.28
759 761 4.134563 GGGTAGTGCGTTCCATGAAATAT 58.865 43.478 0.00 0.00 0.00 1.28
760 762 3.537580 GGGTAGTGCGTTCCATGAAATA 58.462 45.455 0.00 0.00 0.00 1.40
761 763 2.365582 GGGTAGTGCGTTCCATGAAAT 58.634 47.619 0.00 0.00 0.00 2.17
762 764 1.612199 GGGGTAGTGCGTTCCATGAAA 60.612 52.381 0.00 0.00 0.00 2.69
763 765 0.035820 GGGGTAGTGCGTTCCATGAA 60.036 55.000 0.00 0.00 0.00 2.57
764 766 0.907704 AGGGGTAGTGCGTTCCATGA 60.908 55.000 0.00 0.00 0.00 3.07
765 767 0.462047 GAGGGGTAGTGCGTTCCATG 60.462 60.000 0.00 0.00 0.00 3.66
766 768 0.907704 TGAGGGGTAGTGCGTTCCAT 60.908 55.000 0.00 0.00 0.00 3.41
767 769 1.122632 TTGAGGGGTAGTGCGTTCCA 61.123 55.000 0.00 0.00 0.00 3.53
768 770 0.035739 TTTGAGGGGTAGTGCGTTCC 59.964 55.000 0.00 0.00 0.00 3.62
769 771 2.109425 ATTTGAGGGGTAGTGCGTTC 57.891 50.000 0.00 0.00 0.00 3.95
770 772 2.579410 AATTTGAGGGGTAGTGCGTT 57.421 45.000 0.00 0.00 0.00 4.84
771 773 2.556622 CAAAATTTGAGGGGTAGTGCGT 59.443 45.455 0.00 0.00 0.00 5.24
772 774 2.817258 TCAAAATTTGAGGGGTAGTGCG 59.183 45.455 4.03 0.00 34.08 5.34
773 775 4.864704 TTCAAAATTTGAGGGGTAGTGC 57.135 40.909 8.51 0.00 41.38 4.40
810 812 9.796120 CACAGACCTAGTTTTGAACATTTAAAA 57.204 29.630 0.00 0.00 0.00 1.52
811 813 7.918562 GCACAGACCTAGTTTTGAACATTTAAA 59.081 33.333 0.00 0.00 0.00 1.52
812 814 7.067615 TGCACAGACCTAGTTTTGAACATTTAA 59.932 33.333 0.00 0.00 0.00 1.52
813 815 6.544197 TGCACAGACCTAGTTTTGAACATTTA 59.456 34.615 0.00 0.00 0.00 1.40
814 816 5.359576 TGCACAGACCTAGTTTTGAACATTT 59.640 36.000 0.00 0.00 0.00 2.32
815 817 4.887071 TGCACAGACCTAGTTTTGAACATT 59.113 37.500 0.00 0.00 0.00 2.71
832 834 2.832931 GTAGAGCACCACTGCACAG 58.167 57.895 0.00 0.00 46.97 3.66
848 850 2.636893 ACTGCAAAATGGCCAAATGGTA 59.363 40.909 10.96 0.00 37.57 3.25
885 901 3.589654 TTGGCTGCCTTCGTCTCGG 62.590 63.158 21.03 0.00 0.00 4.63
890 906 2.032981 CAGTTTTGGCTGCCTTCGT 58.967 52.632 21.03 0.00 0.00 3.85
915 931 2.444706 CCGGCCATGAGGAGGAGA 60.445 66.667 2.24 0.00 36.64 3.71
995 1014 0.923729 AGAGAGGAGAGGAGGGCAGA 60.924 60.000 0.00 0.00 0.00 4.26
1000 1019 0.552848 AGAGCAGAGAGGAGAGGAGG 59.447 60.000 0.00 0.00 0.00 4.30
1014 1033 2.203832 TGGTGGAGGAGCAGAGCA 60.204 61.111 0.00 0.00 0.00 4.26
1015 1034 2.267324 GTGGTGGAGGAGCAGAGC 59.733 66.667 0.00 0.00 30.97 4.09
1470 1507 1.026718 CCATGGACGACAAGGAAGGC 61.027 60.000 5.56 0.00 40.39 4.35
1492 1529 3.043713 CAGAAACGCGCTGCTCCA 61.044 61.111 5.73 0.00 0.00 3.86
1506 1543 4.838152 GCGGAATCCAGGCGCAGA 62.838 66.667 10.83 2.49 0.00 4.26
1613 1658 3.554692 CCGCCGCATCTTGTCGTC 61.555 66.667 0.00 0.00 0.00 4.20
1696 1741 1.003233 GGAGGCACTGACCTTGTCC 60.003 63.158 0.00 0.00 41.55 4.02
1829 1874 3.319198 GGTGCCGGTCCTTCTCCA 61.319 66.667 1.90 0.00 0.00 3.86
2229 2293 2.165641 GGGGAAATTCGGGTGTTTCATC 59.834 50.000 0.00 0.00 36.34 2.92
2230 2294 2.176045 GGGGAAATTCGGGTGTTTCAT 58.824 47.619 0.00 0.00 36.34 2.57
2237 2301 2.184533 GAATTTGGGGGAAATTCGGGT 58.815 47.619 0.00 0.00 46.23 5.28
2258 2322 5.824904 AGATTTACTAACCTAAGTCGCGA 57.175 39.130 3.71 3.71 0.00 5.87
2319 2383 9.416794 GAAAAGGCTTTTTGGATTTTTGAAAAA 57.583 25.926 24.79 5.47 36.66 1.94
2322 2386 7.936496 AGAAAAGGCTTTTTGGATTTTTGAA 57.064 28.000 24.79 0.00 36.66 2.69
2485 2600 2.457366 ACGCTACTTGGAAGAGTTGG 57.543 50.000 0.00 0.00 0.00 3.77
2494 2610 2.354821 GCCCAATAGAAACGCTACTTGG 59.645 50.000 0.00 0.00 37.42 3.61
2499 2615 1.065782 TGCTGCCCAATAGAAACGCTA 60.066 47.619 0.00 0.00 0.00 4.26
2502 2618 2.867429 CTTTGCTGCCCAATAGAAACG 58.133 47.619 0.00 0.00 32.49 3.60
2511 2627 0.756442 AACTCTTGCTTTGCTGCCCA 60.756 50.000 0.00 0.00 0.00 5.36
2512 2628 0.390492 AAACTCTTGCTTTGCTGCCC 59.610 50.000 0.00 0.00 0.00 5.36
2542 3628 3.006940 TGCTTGTGTCGTTTTCAACTCT 58.993 40.909 0.00 0.00 0.00 3.24
2543 3629 3.063452 TCTGCTTGTGTCGTTTTCAACTC 59.937 43.478 0.00 0.00 0.00 3.01
2545 3631 3.098636 GTCTGCTTGTGTCGTTTTCAAC 58.901 45.455 0.00 0.00 0.00 3.18
2546 3632 2.222931 CGTCTGCTTGTGTCGTTTTCAA 60.223 45.455 0.00 0.00 0.00 2.69
2547 3633 1.326245 CGTCTGCTTGTGTCGTTTTCA 59.674 47.619 0.00 0.00 0.00 2.69
2548 3634 1.591158 TCGTCTGCTTGTGTCGTTTTC 59.409 47.619 0.00 0.00 0.00 2.29
2549 3635 1.647346 TCGTCTGCTTGTGTCGTTTT 58.353 45.000 0.00 0.00 0.00 2.43
2553 3639 0.778815 GACTTCGTCTGCTTGTGTCG 59.221 55.000 0.00 0.00 0.00 4.35
2554 3640 2.141535 AGACTTCGTCTGCTTGTGTC 57.858 50.000 0.00 0.00 41.76 3.67
2555 3641 3.944055 ATAGACTTCGTCTGCTTGTGT 57.056 42.857 6.77 0.00 43.30 3.72
2556 3642 5.597813 AAAATAGACTTCGTCTGCTTGTG 57.402 39.130 6.77 0.00 43.30 3.33
2557 3643 7.602644 TCATTAAAATAGACTTCGTCTGCTTGT 59.397 33.333 6.77 0.00 43.30 3.16
2558 3644 7.963981 TCATTAAAATAGACTTCGTCTGCTTG 58.036 34.615 6.77 0.00 43.30 4.01
2559 3645 8.547967 TTCATTAAAATAGACTTCGTCTGCTT 57.452 30.769 6.77 0.00 43.30 3.91
2560 3646 8.723942 ATTCATTAAAATAGACTTCGTCTGCT 57.276 30.769 6.77 0.00 43.30 4.24
2561 3647 9.851043 GTATTCATTAAAATAGACTTCGTCTGC 57.149 33.333 6.77 0.00 43.30 4.26
2585 3672 9.603921 CCCATAAAATTTAGGAACGTTAGAGTA 57.396 33.333 0.00 0.00 0.00 2.59
2593 3680 6.040247 GGAAAGCCCATAAAATTTAGGAACG 58.960 40.000 0.00 0.00 34.14 3.95
2611 3698 3.511699 GAATCGTGGATTTTGGGAAAGC 58.488 45.455 0.00 0.00 31.89 3.51
2612 3699 3.119137 GGGAATCGTGGATTTTGGGAAAG 60.119 47.826 0.00 0.00 31.89 2.62
2621 3708 0.106719 ATTGCCGGGAATCGTGGATT 60.107 50.000 16.43 0.00 34.71 3.01
2625 3712 3.628017 GAAATTATTGCCGGGAATCGTG 58.372 45.455 25.69 0.00 37.11 4.35
2626 3713 2.289547 CGAAATTATTGCCGGGAATCGT 59.710 45.455 25.69 12.01 37.11 3.73
2648 3751 1.912001 CAATGCCGCATACAAACAGG 58.088 50.000 6.22 0.00 0.00 4.00
2654 3757 1.024046 AACTCGCAATGCCGCATACA 61.024 50.000 6.22 0.00 0.00 2.29
2657 3760 1.024046 TACAACTCGCAATGCCGCAT 61.024 50.000 0.00 0.00 0.00 4.73
2669 3772 2.673368 CCTTTCCGCTCATGTACAACTC 59.327 50.000 0.00 0.00 0.00 3.01
2713 3816 5.446607 GCATGGTAAAACAAACAGCGTTTTT 60.447 36.000 6.35 0.00 42.41 1.94
2718 3821 2.470999 GTGCATGGTAAAACAAACAGCG 59.529 45.455 0.00 0.00 0.00 5.18
2772 3875 0.593128 AGCAGATTGCCGAAACACAC 59.407 50.000 0.00 0.00 46.52 3.82
2811 3914 1.676529 TCGCCATCAGTGACTACTAGC 59.323 52.381 0.00 0.00 34.74 3.42
2878 3982 3.005367 TCCTGAAAATTCAAAACGGGCTC 59.995 43.478 0.00 0.00 36.64 4.70
2905 4009 0.819259 ACACTGGAAACGCATGTGCT 60.819 50.000 6.08 0.00 39.32 4.40
2946 4075 2.811317 CGCTGTTGTCCTCGGCTC 60.811 66.667 0.00 0.00 35.32 4.70
3056 4195 3.785859 GCATCGCCCTGACCCTCA 61.786 66.667 0.00 0.00 0.00 3.86
3057 4196 4.554036 GGCATCGCCCTGACCCTC 62.554 72.222 0.00 0.00 44.06 4.30
3125 4264 4.504916 CCGCTGGAGCTCGACTGG 62.505 72.222 7.83 3.42 39.32 4.00
3126 4265 4.504916 CCCGCTGGAGCTCGACTG 62.505 72.222 7.83 0.00 39.32 3.51
3262 4401 4.394712 CTGGCCGTGACCCTGACC 62.395 72.222 0.00 0.00 0.00 4.02
3263 4402 3.591254 GACTGGCCGTGACCCTGAC 62.591 68.421 4.94 0.00 0.00 3.51
3264 4403 3.311110 GACTGGCCGTGACCCTGA 61.311 66.667 4.94 0.00 0.00 3.86
3265 4404 3.302347 GAGACTGGCCGTGACCCTG 62.302 68.421 4.94 0.00 0.00 4.45
3266 4405 2.997897 GAGACTGGCCGTGACCCT 60.998 66.667 4.94 0.00 0.00 4.34
3268 4407 2.262915 CAGAGACTGGCCGTGACC 59.737 66.667 4.94 0.00 0.00 4.02
3269 4408 2.433318 GCAGAGACTGGCCGTGAC 60.433 66.667 4.94 0.00 31.21 3.67
3270 4409 1.830587 AATGCAGAGACTGGCCGTGA 61.831 55.000 4.94 0.00 31.21 4.35
3271 4410 0.957395 AAATGCAGAGACTGGCCGTG 60.957 55.000 4.94 0.00 31.21 4.94
3272 4411 0.957395 CAAATGCAGAGACTGGCCGT 60.957 55.000 0.00 0.00 31.21 5.68
3273 4412 1.651240 CCAAATGCAGAGACTGGCCG 61.651 60.000 0.00 0.00 31.21 6.13
3274 4413 0.322816 TCCAAATGCAGAGACTGGCC 60.323 55.000 0.00 0.00 31.21 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.