Multiple sequence alignment - TraesCS5A01G199600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G199600 chr5A 100.000 4482 0 0 2588 7069 404314179 404309698 0.000000e+00 8277
1 TraesCS5A01G199600 chr5A 100.000 2266 0 0 1 2266 404316766 404314501 0.000000e+00 4185
2 TraesCS5A01G199600 chr5A 87.387 222 28 0 2588 2809 404314122 404313901 9.100000e-64 255
3 TraesCS5A01G199600 chr5A 87.387 222 28 0 2645 2866 404314179 404313958 9.100000e-64 255
4 TraesCS5A01G199600 chr5A 92.941 170 12 0 6900 7069 106360290 106360459 1.520000e-61 248
5 TraesCS5A01G199600 chr5A 73.814 485 91 27 5203 5675 404232944 404232484 7.340000e-35 159
6 TraesCS5A01G199600 chr5A 88.618 123 11 3 1500 1621 476640515 476640395 5.710000e-31 147
7 TraesCS5A01G199600 chr5A 94.737 76 4 0 2066 2141 404314581 404314506 1.250000e-22 119
8 TraesCS5A01G199600 chr5A 94.737 76 4 0 2186 2261 404314701 404314626 1.250000e-22 119
9 TraesCS5A01G199600 chr5D 95.125 3918 117 20 2588 6467 311310737 311306856 0.000000e+00 6109
10 TraesCS5A01G199600 chr5D 95.355 2110 57 21 181 2266 311313255 311311163 0.000000e+00 3315
11 TraesCS5A01G199600 chr5D 90.314 382 23 10 6470 6839 311306820 311306441 8.240000e-134 488
12 TraesCS5A01G199600 chr5D 79.678 497 97 3 4748 5243 310703469 310702976 8.720000e-94 355
13 TraesCS5A01G199600 chr5D 88.106 227 27 0 2640 2866 311310742 311310516 3.250000e-68 270
14 TraesCS5A01G199600 chr5D 88.053 226 24 3 4 228 311313480 311313257 1.510000e-66 265
15 TraesCS5A01G199600 chr5D 86.937 222 29 0 2588 2809 311310680 311310459 4.230000e-62 250
16 TraesCS5A01G199600 chr5D 85.222 203 18 6 2066 2262 311311306 311311110 1.560000e-46 198
17 TraesCS5A01G199600 chr5D 74.220 481 91 27 5203 5675 310702974 310702519 3.390000e-38 171
18 TraesCS5A01G199600 chr5D 87.770 139 11 4 2066 2204 311311243 311311111 2.640000e-34 158
19 TraesCS5A01G199600 chr5D 92.105 76 6 0 2186 2261 311311363 311311288 2.700000e-19 108
20 TraesCS5A01G199600 chr5B 93.861 2997 90 27 3829 6818 357105620 357102711 0.000000e+00 4429
21 TraesCS5A01G199600 chr5B 96.161 2266 75 9 1 2266 357109500 357107247 0.000000e+00 3692
22 TraesCS5A01G199600 chr5B 97.099 1172 34 0 2591 3762 357106827 357105656 0.000000e+00 1977
23 TraesCS5A01G199600 chr5B 77.925 530 93 14 4715 5243 356722009 356721503 6.890000e-80 309
24 TraesCS5A01G199600 chr5B 88.584 219 25 0 2648 2866 357106827 357106609 4.200000e-67 267
25 TraesCS5A01G199600 chr5B 87.838 222 27 0 2588 2809 357106773 357106552 1.960000e-65 261
26 TraesCS5A01G199600 chr5B 74.793 484 89 24 5203 5675 356721501 356721040 3.370000e-43 187
27 TraesCS5A01G199600 chr5B 85.143 175 13 7 2066 2234 357107390 357107223 4.390000e-37 167
28 TraesCS5A01G199600 chr5B 90.000 120 11 1 1500 1619 635560826 635560708 3.410000e-33 154
29 TraesCS5A01G199600 chr5B 84.667 150 11 5 2123 2266 357107447 357107304 9.560000e-29 139
30 TraesCS5A01G199600 chr5B 90.698 86 8 0 2066 2151 357107327 357107242 1.610000e-21 115
31 TraesCS5A01G199600 chr7D 93.491 169 9 2 6901 7069 311270373 311270539 4.230000e-62 250
32 TraesCS5A01G199600 chr7D 93.939 165 10 0 6905 7069 471545372 471545208 4.230000e-62 250
33 TraesCS5A01G199600 chr7D 93.333 165 11 0 6905 7069 465340565 465340401 1.970000e-60 244
34 TraesCS5A01G199600 chr7D 88.095 126 13 2 1493 1618 565705253 565705130 1.590000e-31 148
35 TraesCS5A01G199600 chr4D 94.444 162 9 0 6908 7069 439678743 439678582 4.230000e-62 250
36 TraesCS5A01G199600 chr6D 92.486 173 11 2 6897 7069 391746304 391746474 5.480000e-61 246
37 TraesCS5A01G199600 chr6D 87.603 121 13 2 1500 1619 144280162 144280043 9.560000e-29 139
38 TraesCS5A01G199600 chr2A 92.442 172 12 1 6899 7069 359175590 359175419 1.970000e-60 244
39 TraesCS5A01G199600 chr6A 91.160 181 12 4 6891 7069 68601068 68601246 7.080000e-60 243
40 TraesCS5A01G199600 chr3D 91.525 177 13 2 6893 7069 145197799 145197625 7.080000e-60 243
41 TraesCS5A01G199600 chr1B 92.562 121 8 1 1500 1620 48266477 48266358 9.430000e-39 172
42 TraesCS5A01G199600 chr3A 90.756 119 9 2 1501 1619 291825334 291825450 2.640000e-34 158
43 TraesCS5A01G199600 chr4B 89.831 118 11 1 1501 1618 27399534 27399418 4.420000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G199600 chr5A 404309698 404316766 7068 True 2201.666667 8277 94.041333 1 7069 6 chr5A.!!$R3 7068
1 TraesCS5A01G199600 chr5D 311306441 311313480 7039 True 1240.111111 6109 89.887444 4 6839 9 chr5D.!!$R2 6835
2 TraesCS5A01G199600 chr5D 310702519 310703469 950 True 263.000000 355 76.949000 4748 5675 2 chr5D.!!$R1 927
3 TraesCS5A01G199600 chr5B 357102711 357109500 6789 True 1380.875000 4429 90.506375 1 6818 8 chr5B.!!$R3 6817
4 TraesCS5A01G199600 chr5B 356721040 356722009 969 True 248.000000 309 76.359000 4715 5675 2 chr5B.!!$R2 960

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 302 1.030488 GGCGAAGAACCCTAAAGGCC 61.030 60.000 0.00 0.00 40.58 5.19 F
666 735 1.452953 CTCGCGTATACCAGCCTCCA 61.453 60.000 5.77 0.00 0.00 3.86 F
2138 2207 0.260230 TGTTTTTGGTCCTGGAGCCA 59.740 50.000 22.16 16.74 0.00 4.75 F
2692 2865 0.755686 CGCCTCTTCCTCCAGCTAAT 59.244 55.000 0.00 0.00 0.00 1.73 F
3860 4051 0.548682 AGTGAGTGGGGAGATGGCTT 60.549 55.000 0.00 0.00 0.00 4.35 F
5036 5242 2.659428 AGCTGACTTTGGTCTTGCTTT 58.341 42.857 9.77 0.00 43.89 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 2207 1.048601 AGTGGTCGTGGTCTTGTCAT 58.951 50.000 0.0 0.0 0.0 3.06 R
2617 2790 2.249139 ACGTTAGCTGAAGGAAGAGGT 58.751 47.619 0.0 0.0 0.0 3.85 R
3860 4051 0.331278 CTTAGGTCCCCACATGGCAA 59.669 55.000 0.0 0.0 0.0 4.52 R
4551 4756 0.473755 TTTCTGAAGGTGCTGGCTCA 59.526 50.000 0.0 0.0 0.0 4.26 R
5507 5760 1.195115 ACTCTGCTATTTCCTCGCCA 58.805 50.000 0.0 0.0 0.0 5.69 R
6480 6778 0.031585 GAAACGGTGTGGGAAAAGCC 59.968 55.000 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 1.404986 CGTGAAAATACTGAGGCGGGA 60.405 52.381 0.00 0.00 0.00 5.14
160 161 2.203294 GGTTGAACCTGGCCGTGT 60.203 61.111 7.20 0.00 34.73 4.49
257 302 1.030488 GGCGAAGAACCCTAAAGGCC 61.030 60.000 0.00 0.00 40.58 5.19
399 444 2.032981 CTTTCTTGTTGCCCGCTGT 58.967 52.632 0.00 0.00 0.00 4.40
666 735 1.452953 CTCGCGTATACCAGCCTCCA 61.453 60.000 5.77 0.00 0.00 3.86
787 856 4.207019 CGAACTCAATTTTTGCAACTGACC 59.793 41.667 0.00 0.00 0.00 4.02
789 858 4.685924 ACTCAATTTTTGCAACTGACCTG 58.314 39.130 0.00 0.00 0.00 4.00
993 1062 2.030805 GCGAGCCTTGTTTGTTTCAGAT 60.031 45.455 0.00 0.00 0.00 2.90
1116 1185 3.605634 TGCAGTGCATAGTATTTCGGTT 58.394 40.909 15.37 0.00 31.71 4.44
1182 1251 4.124238 AGTGTGCATGTTGTTTACGTACT 58.876 39.130 0.00 0.00 0.00 2.73
1290 1359 6.378280 GTCATCCCAACCATTTTAATGAGAGT 59.622 38.462 4.07 0.00 38.70 3.24
1377 1446 5.582269 TGATCTTTCCGAGTTCTGCAAATAG 59.418 40.000 0.00 0.00 0.00 1.73
1535 1604 5.941058 TCCCAAATTACTTGTCGCAGAAATA 59.059 36.000 0.00 0.00 39.69 1.40
1608 1677 2.610976 CCGTGACAAGTAATTCCGGACA 60.611 50.000 1.83 0.00 36.12 4.02
1623 1692 4.150359 TCCGGACAGAGGGAGTATTTATC 58.850 47.826 0.00 0.00 0.00 1.75
1731 1800 8.275040 AGAGCAGTATAATGTTTTATCTTGGGT 58.725 33.333 1.67 0.00 30.64 4.51
1814 1883 8.718734 GGTTCATTTCCTGTAGTTAACTAGTTG 58.281 37.037 18.56 8.62 0.00 3.16
1896 1965 5.813672 GCATTATGTGTTTGGATTGCTGAAT 59.186 36.000 0.00 0.00 0.00 2.57
1923 1992 3.569701 AGTAATATGGCAGGCGGATTTTG 59.430 43.478 0.00 0.00 0.00 2.44
1998 2067 2.069776 CAGGTCTTCCAGGCTTCCA 58.930 57.895 0.00 0.00 35.89 3.53
2138 2207 0.260230 TGTTTTTGGTCCTGGAGCCA 59.740 50.000 22.16 16.74 0.00 4.75
2174 2243 3.244561 ACCACTTATGACACCTGTTCCTG 60.245 47.826 0.00 0.00 0.00 3.86
2617 2790 2.022195 GTGACTAGACCACCTATCGCA 58.978 52.381 0.00 0.00 0.00 5.10
2621 2794 1.609555 CTAGACCACCTATCGCACCTC 59.390 57.143 0.00 0.00 0.00 3.85
2678 2851 1.170919 TAGACCACCTATCGCGCCTC 61.171 60.000 0.00 0.00 0.00 4.70
2692 2865 0.755686 CGCCTCTTCCTCCAGCTAAT 59.244 55.000 0.00 0.00 0.00 1.73
2718 2891 1.550524 TGGTCATGGAGCTGTGACTAC 59.449 52.381 17.86 7.63 43.23 2.73
2755 2928 3.159472 TGTTCCTCCAGCTAACGTCTTA 58.841 45.455 0.00 0.00 0.00 2.10
2917 3090 2.553602 TGCATCAACAGTGGACAATGAC 59.446 45.455 6.77 0.00 0.00 3.06
2998 3171 8.852135 AGTACTTACAACCTAGCTCATAAGATC 58.148 37.037 0.00 0.00 0.00 2.75
3102 3275 9.582648 AGTTGGAGTTTATAAAAGGAAAAGCTA 57.417 29.630 0.00 0.00 0.00 3.32
3203 3376 5.983118 GTCTGTGGAATTGTAAAAAGTTGGG 59.017 40.000 0.00 0.00 0.00 4.12
3225 3398 4.142093 GGATCCAGTCACAAATCCAATTGG 60.142 45.833 19.08 19.08 38.05 3.16
3286 3459 3.159984 GAAGGCAGTCTTCGTGCG 58.840 61.111 0.00 0.00 41.95 5.34
3357 3530 4.397420 TGTACTGGTCTGCATGTCATTTT 58.603 39.130 0.00 0.00 0.00 1.82
3437 3610 5.279556 GGAGTTGGCCCTAGTTAGATATGTC 60.280 48.000 0.00 0.00 0.00 3.06
3466 3639 8.816640 ATCGGATTGGCAATTTATTTTATGAC 57.183 30.769 14.93 0.00 0.00 3.06
3500 3673 7.563888 ACATCACATATCTCTTGTGGATTTG 57.436 36.000 4.18 0.00 43.67 2.32
3707 3880 4.397420 TGTCTTTTCAATAGAGGCTTGCA 58.603 39.130 0.00 0.00 0.00 4.08
3860 4051 0.548682 AGTGAGTGGGGAGATGGCTT 60.549 55.000 0.00 0.00 0.00 4.35
3904 4095 7.068103 AGGGTAATTTGATTATTTCATGTCGCA 59.932 33.333 0.00 0.00 33.34 5.10
3964 4155 5.843019 ATTGGACCTAACGGGAATGATAT 57.157 39.130 0.00 0.00 38.76 1.63
4261 4457 5.539582 TCCGTTGATGTTATTGTGCTTAC 57.460 39.130 0.00 0.00 0.00 2.34
4455 4653 8.787852 CCTGAACATTAGAAAAGTAAAGCTTCT 58.212 33.333 0.00 0.00 36.17 2.85
4551 4756 5.018809 ACAGGTTAATGTCAATGAAGCCAT 58.981 37.500 0.00 0.00 33.66 4.40
4555 4760 3.795623 AATGTCAATGAAGCCATGAGC 57.204 42.857 0.00 0.00 44.25 4.26
4806 5011 7.345914 TGAAAAAGAGGAACATTTAGGGGAAAA 59.654 33.333 0.00 0.00 0.00 2.29
5018 5224 4.099573 TCCATAGTGTAGCTACCTTGAAGC 59.900 45.833 21.01 3.19 40.40 3.86
5036 5242 2.659428 AGCTGACTTTGGTCTTGCTTT 58.341 42.857 9.77 0.00 43.89 3.51
5404 5656 7.542130 CCTTGCAGACTGTTTTAAATATGAACC 59.458 37.037 3.99 0.00 0.00 3.62
5435 5688 9.778741 TCTCATTCTTATACCATCAAATACACC 57.221 33.333 0.00 0.00 0.00 4.16
5507 5760 7.553881 TTCAGAGAAGTCGATTGAAGTTTTT 57.446 32.000 0.00 0.00 0.00 1.94
5694 5947 2.158900 ACCGGATTAGCATGAAGACAGG 60.159 50.000 9.46 0.00 0.00 4.00
5786 6039 3.746940 TCTCGTTTCCCACTTTTAAGGG 58.253 45.455 0.00 0.00 46.90 3.95
5847 6100 8.380743 TGCAATTTGAATTTGAGCTATTGTTT 57.619 26.923 0.00 0.00 0.00 2.83
5907 6160 1.271054 TGCCTTTCTCAGTGCCTTCTC 60.271 52.381 0.00 0.00 0.00 2.87
5922 6175 0.671796 TTCTCGTTGCTCAAGGTCGA 59.328 50.000 2.79 0.00 0.00 4.20
5947 6200 5.566627 CGGGTAATCACAAAGAAATTGGCTT 60.567 40.000 0.00 0.00 43.66 4.35
5948 6201 5.639082 GGGTAATCACAAAGAAATTGGCTTG 59.361 40.000 0.00 0.00 43.66 4.01
6001 6254 3.634397 TCTCAAAAGAGATTGGCGGAT 57.366 42.857 0.00 0.00 0.00 4.18
6069 6322 1.760192 ATGAAGCAGTCATTCTGGGC 58.240 50.000 0.00 0.00 45.13 5.36
6070 6323 0.401356 TGAAGCAGTCATTCTGGGCA 59.599 50.000 0.00 0.00 43.78 5.36
6071 6324 0.807496 GAAGCAGTCATTCTGGGCAC 59.193 55.000 0.00 0.00 43.78 5.01
6072 6325 0.403271 AAGCAGTCATTCTGGGCACT 59.597 50.000 0.00 0.00 43.78 4.40
6073 6326 0.322277 AGCAGTCATTCTGGGCACTG 60.322 55.000 0.00 0.00 43.78 3.66
6074 6327 0.607489 GCAGTCATTCTGGGCACTGT 60.607 55.000 0.00 0.00 43.78 3.55
6075 6328 1.162698 CAGTCATTCTGGGCACTGTG 58.837 55.000 2.76 2.76 40.23 3.66
6077 6330 1.143684 AGTCATTCTGGGCACTGTGTT 59.856 47.619 9.86 0.00 0.00 3.32
6078 6331 1.537202 GTCATTCTGGGCACTGTGTTC 59.463 52.381 9.86 2.87 0.00 3.18
6079 6332 1.421268 TCATTCTGGGCACTGTGTTCT 59.579 47.619 9.86 0.00 0.00 3.01
6080 6333 1.808945 CATTCTGGGCACTGTGTTCTC 59.191 52.381 9.86 0.00 0.00 2.87
6278 6538 8.289618 TGATAAAGCATATTTATTCGGACTTGC 58.710 33.333 0.00 0.00 0.00 4.01
6279 6539 6.699575 AAAGCATATTTATTCGGACTTGCT 57.300 33.333 0.00 0.00 40.66 3.91
6280 6540 7.801716 AAAGCATATTTATTCGGACTTGCTA 57.198 32.000 0.00 0.00 38.17 3.49
6281 6541 6.787085 AGCATATTTATTCGGACTTGCTAC 57.213 37.500 0.00 0.00 37.42 3.58
6282 6542 5.701290 AGCATATTTATTCGGACTTGCTACC 59.299 40.000 0.00 0.00 37.42 3.18
6287 6547 4.979204 CGGACTTGCTACCGTTCA 57.021 55.556 0.00 0.00 43.53 3.18
6288 6548 3.436001 CGGACTTGCTACCGTTCAT 57.564 52.632 0.00 0.00 43.53 2.57
6289 6549 1.722011 CGGACTTGCTACCGTTCATT 58.278 50.000 0.00 0.00 43.53 2.57
6290 6550 2.073816 CGGACTTGCTACCGTTCATTT 58.926 47.619 0.00 0.00 43.53 2.32
6291 6551 2.482721 CGGACTTGCTACCGTTCATTTT 59.517 45.455 0.00 0.00 43.53 1.82
6292 6552 3.058501 CGGACTTGCTACCGTTCATTTTT 60.059 43.478 0.00 0.00 43.53 1.94
6345 6610 7.702772 TGTCGAGCTGAGTTTTTCTTATATCTC 59.297 37.037 0.00 0.00 0.00 2.75
6346 6611 7.702772 GTCGAGCTGAGTTTTTCTTATATCTCA 59.297 37.037 0.00 0.00 0.00 3.27
6347 6612 8.417106 TCGAGCTGAGTTTTTCTTATATCTCAT 58.583 33.333 0.00 0.00 32.73 2.90
6373 6638 1.392510 GCCACGACGTTATCTGTTTCC 59.607 52.381 0.00 0.00 0.00 3.13
6376 6641 3.323243 CACGACGTTATCTGTTTCCCTT 58.677 45.455 0.00 0.00 0.00 3.95
6404 6669 4.293662 TGTTGGGTTATGTGCTATGTCA 57.706 40.909 0.00 0.00 0.00 3.58
6425 6690 6.974622 TGTCAGCTGATTTTTCTTCTTTTGAC 59.025 34.615 21.47 1.64 0.00 3.18
6447 6712 1.154197 GGTTGTTTCTACGTGAGGGC 58.846 55.000 0.00 0.00 0.00 5.19
6455 6720 2.181125 TCTACGTGAGGGCCATTTACA 58.819 47.619 6.18 0.00 0.00 2.41
6591 6900 5.138125 TGTTCTTCCTTTTTCCATGCATC 57.862 39.130 0.00 0.00 0.00 3.91
6592 6901 4.588106 TGTTCTTCCTTTTTCCATGCATCA 59.412 37.500 0.00 0.00 0.00 3.07
6689 6999 6.886459 TGAAGTTCCTATCAGCAATTAAGCTT 59.114 34.615 3.48 3.48 43.70 3.74
6690 7000 8.046708 TGAAGTTCCTATCAGCAATTAAGCTTA 58.953 33.333 0.86 0.86 43.70 3.09
6691 7001 7.793927 AGTTCCTATCAGCAATTAAGCTTAC 57.206 36.000 5.45 0.00 43.70 2.34
6692 7002 7.338710 AGTTCCTATCAGCAATTAAGCTTACA 58.661 34.615 5.45 0.00 43.70 2.41
6693 7003 7.995488 AGTTCCTATCAGCAATTAAGCTTACAT 59.005 33.333 5.45 0.72 43.70 2.29
6694 7004 9.273016 GTTCCTATCAGCAATTAAGCTTACATA 57.727 33.333 5.45 0.00 43.70 2.29
6695 7005 9.494271 TTCCTATCAGCAATTAAGCTTACATAG 57.506 33.333 5.45 3.99 43.70 2.23
6696 7006 8.651389 TCCTATCAGCAATTAAGCTTACATAGT 58.349 33.333 5.45 0.00 43.70 2.12
6697 7007 8.930760 CCTATCAGCAATTAAGCTTACATAGTC 58.069 37.037 5.45 0.00 43.70 2.59
6698 7008 9.481340 CTATCAGCAATTAAGCTTACATAGTCA 57.519 33.333 5.45 0.00 43.70 3.41
6699 7009 7.776933 TCAGCAATTAAGCTTACATAGTCAG 57.223 36.000 5.45 0.00 43.70 3.51
6700 7010 7.555965 TCAGCAATTAAGCTTACATAGTCAGA 58.444 34.615 5.45 0.00 43.70 3.27
6701 7011 8.040727 TCAGCAATTAAGCTTACATAGTCAGAA 58.959 33.333 5.45 0.00 43.70 3.02
6702 7012 8.834465 CAGCAATTAAGCTTACATAGTCAGAAT 58.166 33.333 5.45 0.00 43.70 2.40
6839 7177 7.566709 CAATTCCAAGTAGTTTTTGAATGTGC 58.433 34.615 0.00 0.00 0.00 4.57
6840 7178 5.195001 TCCAAGTAGTTTTTGAATGTGCC 57.805 39.130 0.00 0.00 0.00 5.01
6841 7179 4.038642 TCCAAGTAGTTTTTGAATGTGCCC 59.961 41.667 0.00 0.00 0.00 5.36
6842 7180 4.039124 CCAAGTAGTTTTTGAATGTGCCCT 59.961 41.667 0.00 0.00 0.00 5.19
6843 7181 5.453198 CCAAGTAGTTTTTGAATGTGCCCTT 60.453 40.000 0.00 0.00 0.00 3.95
6844 7182 6.239176 CCAAGTAGTTTTTGAATGTGCCCTTA 60.239 38.462 0.00 0.00 0.00 2.69
6845 7183 6.969993 AGTAGTTTTTGAATGTGCCCTTAA 57.030 33.333 0.00 0.00 0.00 1.85
6846 7184 7.354751 AGTAGTTTTTGAATGTGCCCTTAAA 57.645 32.000 0.00 0.00 0.00 1.52
6847 7185 7.787028 AGTAGTTTTTGAATGTGCCCTTAAAA 58.213 30.769 0.00 0.00 0.00 1.52
6848 7186 8.261522 AGTAGTTTTTGAATGTGCCCTTAAAAA 58.738 29.630 0.00 0.00 0.00 1.94
6872 7210 5.545063 AAAGGTAGTTTTTGAATGTGGGG 57.455 39.130 0.00 0.00 0.00 4.96
6873 7211 2.897326 AGGTAGTTTTTGAATGTGGGGC 59.103 45.455 0.00 0.00 0.00 5.80
6874 7212 2.352323 GGTAGTTTTTGAATGTGGGGCG 60.352 50.000 0.00 0.00 0.00 6.13
6875 7213 0.033366 AGTTTTTGAATGTGGGGCGC 59.967 50.000 0.00 0.00 0.00 6.53
6876 7214 0.948623 GTTTTTGAATGTGGGGCGCC 60.949 55.000 21.18 21.18 0.00 6.53
6877 7215 1.402896 TTTTTGAATGTGGGGCGCCA 61.403 50.000 30.85 20.22 0.00 5.69
6878 7216 1.190833 TTTTGAATGTGGGGCGCCAT 61.191 50.000 30.85 10.31 0.00 4.40
6879 7217 1.190833 TTTGAATGTGGGGCGCCATT 61.191 50.000 30.85 19.37 34.11 3.16
6880 7218 1.886253 TTGAATGTGGGGCGCCATTG 61.886 55.000 30.85 0.00 31.67 2.82
6881 7219 3.721557 GAATGTGGGGCGCCATTGC 62.722 63.158 30.85 13.79 31.67 3.56
6884 7222 4.440127 GTGGGGCGCCATTGCAAG 62.440 66.667 30.85 0.00 37.32 4.01
6885 7223 4.992740 TGGGGCGCCATTGCAAGT 62.993 61.111 30.85 0.00 37.32 3.16
6886 7224 3.694538 GGGGCGCCATTGCAAGTT 61.695 61.111 30.85 0.00 37.32 2.66
6887 7225 2.343387 GGGCGCCATTGCAAGTTT 59.657 55.556 30.85 0.00 37.32 2.66
6888 7226 1.301637 GGGCGCCATTGCAAGTTTT 60.302 52.632 30.85 0.00 37.32 2.43
6889 7227 0.037790 GGGCGCCATTGCAAGTTTTA 60.038 50.000 30.85 0.00 37.32 1.52
6890 7228 1.606737 GGGCGCCATTGCAAGTTTTAA 60.607 47.619 30.85 0.00 37.32 1.52
6891 7229 1.726248 GGCGCCATTGCAAGTTTTAAG 59.274 47.619 24.80 0.00 37.32 1.85
6892 7230 1.126662 GCGCCATTGCAAGTTTTAAGC 59.873 47.619 4.94 0.36 37.32 3.09
6893 7231 2.676076 CGCCATTGCAAGTTTTAAGCT 58.324 42.857 4.94 0.00 37.32 3.74
6894 7232 2.409378 CGCCATTGCAAGTTTTAAGCTG 59.591 45.455 4.94 0.00 37.32 4.24
6895 7233 2.738314 GCCATTGCAAGTTTTAAGCTGG 59.262 45.455 4.94 5.40 37.47 4.85
6896 7234 3.554752 GCCATTGCAAGTTTTAAGCTGGA 60.555 43.478 12.86 0.00 37.47 3.86
6897 7235 4.824289 CCATTGCAAGTTTTAAGCTGGAT 58.176 39.130 4.94 0.00 0.00 3.41
6898 7236 5.240121 CCATTGCAAGTTTTAAGCTGGATT 58.760 37.500 4.94 0.00 0.00 3.01
6899 7237 5.121142 CCATTGCAAGTTTTAAGCTGGATTG 59.879 40.000 4.94 0.00 0.00 2.67
6900 7238 3.652274 TGCAAGTTTTAAGCTGGATTGC 58.348 40.909 10.59 10.59 41.36 3.56
6901 7239 3.069300 TGCAAGTTTTAAGCTGGATTGCA 59.931 39.130 14.29 14.29 46.49 4.08
6902 7240 4.057432 GCAAGTTTTAAGCTGGATTGCAA 58.943 39.130 0.00 0.00 40.83 4.08
6903 7241 4.084380 GCAAGTTTTAAGCTGGATTGCAAC 60.084 41.667 0.00 0.00 40.83 4.17
6904 7242 5.291971 CAAGTTTTAAGCTGGATTGCAACT 58.708 37.500 0.00 0.00 34.99 3.16
6905 7243 6.446318 CAAGTTTTAAGCTGGATTGCAACTA 58.554 36.000 0.00 0.00 34.99 2.24
6906 7244 6.840780 AGTTTTAAGCTGGATTGCAACTAT 57.159 33.333 0.00 0.00 34.99 2.12
6907 7245 7.938140 AGTTTTAAGCTGGATTGCAACTATA 57.062 32.000 0.00 0.00 34.99 1.31
6908 7246 7.762382 AGTTTTAAGCTGGATTGCAACTATAC 58.238 34.615 0.00 0.00 34.99 1.47
6909 7247 7.393234 AGTTTTAAGCTGGATTGCAACTATACA 59.607 33.333 0.00 0.00 34.99 2.29
6910 7248 7.695480 TTTAAGCTGGATTGCAACTATACAA 57.305 32.000 0.00 0.00 34.99 2.41
6911 7249 5.567138 AAGCTGGATTGCAACTATACAAC 57.433 39.130 0.00 0.00 34.99 3.32
6912 7250 4.588899 AGCTGGATTGCAACTATACAACA 58.411 39.130 0.00 0.00 34.99 3.33
6913 7251 5.009631 AGCTGGATTGCAACTATACAACAA 58.990 37.500 0.00 0.00 34.99 2.83
6914 7252 5.095490 GCTGGATTGCAACTATACAACAAC 58.905 41.667 0.00 0.00 0.00 3.32
6915 7253 5.335583 GCTGGATTGCAACTATACAACAACA 60.336 40.000 0.00 0.00 0.00 3.33
6916 7254 6.641169 TGGATTGCAACTATACAACAACAA 57.359 33.333 0.00 0.00 0.00 2.83
6917 7255 6.442952 TGGATTGCAACTATACAACAACAAC 58.557 36.000 0.00 0.00 0.00 3.32
6918 7256 6.039829 TGGATTGCAACTATACAACAACAACA 59.960 34.615 0.00 0.00 0.00 3.33
6919 7257 6.920758 GGATTGCAACTATACAACAACAACAA 59.079 34.615 0.00 0.00 0.00 2.83
6920 7258 7.096230 GGATTGCAACTATACAACAACAACAAC 60.096 37.037 0.00 0.00 0.00 3.32
6921 7259 6.196079 TGCAACTATACAACAACAACAACA 57.804 33.333 0.00 0.00 0.00 3.33
6922 7260 6.621613 TGCAACTATACAACAACAACAACAA 58.378 32.000 0.00 0.00 0.00 2.83
6923 7261 7.090808 TGCAACTATACAACAACAACAACAAA 58.909 30.769 0.00 0.00 0.00 2.83
6924 7262 7.274468 TGCAACTATACAACAACAACAACAAAG 59.726 33.333 0.00 0.00 0.00 2.77
6925 7263 7.608755 CAACTATACAACAACAACAACAAAGC 58.391 34.615 0.00 0.00 0.00 3.51
6926 7264 6.270064 ACTATACAACAACAACAACAAAGCC 58.730 36.000 0.00 0.00 0.00 4.35
6927 7265 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
6928 7266 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
6929 7267 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
6930 7268 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
6931 7269 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
6932 7270 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
6933 7271 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
6934 7272 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
6935 7273 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
6936 7274 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
6937 7275 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
6938 7276 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
6939 7277 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
6940 7278 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
6941 7279 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
6942 7280 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
6943 7281 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
6944 7282 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
6945 7283 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
6954 7292 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
6955 7293 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
6956 7294 3.492337 CAAACAAGTTGGGGTAGGCTAA 58.508 45.455 7.96 0.00 33.18 3.09
6957 7295 3.887916 AACAAGTTGGGGTAGGCTAAA 57.112 42.857 7.96 0.00 0.00 1.85
6958 7296 3.434940 ACAAGTTGGGGTAGGCTAAAG 57.565 47.619 7.96 0.00 0.00 1.85
6959 7297 2.983898 ACAAGTTGGGGTAGGCTAAAGA 59.016 45.455 7.96 0.00 0.00 2.52
6960 7298 3.591977 ACAAGTTGGGGTAGGCTAAAGAT 59.408 43.478 7.96 0.00 0.00 2.40
6961 7299 3.933861 AGTTGGGGTAGGCTAAAGATG 57.066 47.619 0.00 0.00 0.00 2.90
6962 7300 3.460825 AGTTGGGGTAGGCTAAAGATGA 58.539 45.455 0.00 0.00 0.00 2.92
6963 7301 3.850173 AGTTGGGGTAGGCTAAAGATGAA 59.150 43.478 0.00 0.00 0.00 2.57
6964 7302 4.291249 AGTTGGGGTAGGCTAAAGATGAAA 59.709 41.667 0.00 0.00 0.00 2.69
6965 7303 4.230745 TGGGGTAGGCTAAAGATGAAAC 57.769 45.455 0.00 0.00 0.00 2.78
6966 7304 3.053917 TGGGGTAGGCTAAAGATGAAACC 60.054 47.826 0.00 0.00 0.00 3.27
6967 7305 3.552875 GGGTAGGCTAAAGATGAAACCC 58.447 50.000 0.00 0.00 38.66 4.11
6968 7306 3.053917 GGGTAGGCTAAAGATGAAACCCA 60.054 47.826 10.72 0.00 43.95 4.51
6969 7307 4.386424 GGGTAGGCTAAAGATGAAACCCAT 60.386 45.833 10.72 0.00 43.95 4.00
6970 7308 5.163131 GGGTAGGCTAAAGATGAAACCCATA 60.163 44.000 10.72 0.00 43.95 2.74
6971 7309 6.362248 GGTAGGCTAAAGATGAAACCCATAA 58.638 40.000 0.00 0.00 35.17 1.90
6972 7310 6.486993 GGTAGGCTAAAGATGAAACCCATAAG 59.513 42.308 0.00 0.00 35.17 1.73
6973 7311 6.327386 AGGCTAAAGATGAAACCCATAAGA 57.673 37.500 0.00 0.00 35.17 2.10
6974 7312 6.915786 AGGCTAAAGATGAAACCCATAAGAT 58.084 36.000 0.00 0.00 35.17 2.40
6975 7313 7.001073 AGGCTAAAGATGAAACCCATAAGATC 58.999 38.462 0.00 0.00 35.17 2.75
6976 7314 7.001073 GGCTAAAGATGAAACCCATAAGATCT 58.999 38.462 0.00 0.00 35.17 2.75
6977 7315 7.503902 GGCTAAAGATGAAACCCATAAGATCTT 59.496 37.037 13.56 13.56 35.17 2.40
6978 7316 8.907885 GCTAAAGATGAAACCCATAAGATCTTT 58.092 33.333 14.36 0.00 41.05 2.52
6980 7318 8.884124 AAAGATGAAACCCATAAGATCTTTCA 57.116 30.769 14.36 9.62 36.04 2.69
6981 7319 8.884124 AAGATGAAACCCATAAGATCTTTCAA 57.116 30.769 14.36 0.00 35.17 2.69
6982 7320 8.286191 AGATGAAACCCATAAGATCTTTCAAC 57.714 34.615 14.36 8.07 35.17 3.18
6983 7321 6.834168 TGAAACCCATAAGATCTTTCAACC 57.166 37.500 14.36 0.00 29.93 3.77
6984 7322 6.310941 TGAAACCCATAAGATCTTTCAACCA 58.689 36.000 14.36 0.00 29.93 3.67
6985 7323 6.780031 TGAAACCCATAAGATCTTTCAACCAA 59.220 34.615 14.36 0.00 29.93 3.67
6986 7324 6.590234 AACCCATAAGATCTTTCAACCAAC 57.410 37.500 14.36 0.00 0.00 3.77
6987 7325 5.892348 ACCCATAAGATCTTTCAACCAACT 58.108 37.500 14.36 0.00 0.00 3.16
6988 7326 5.946377 ACCCATAAGATCTTTCAACCAACTC 59.054 40.000 14.36 0.00 0.00 3.01
6989 7327 5.945784 CCCATAAGATCTTTCAACCAACTCA 59.054 40.000 14.36 0.00 0.00 3.41
6990 7328 6.604795 CCCATAAGATCTTTCAACCAACTCAT 59.395 38.462 14.36 0.00 0.00 2.90
6991 7329 7.415989 CCCATAAGATCTTTCAACCAACTCATG 60.416 40.741 14.36 6.39 0.00 3.07
7000 7338 2.353858 CCAACTCATGGCTTTGGCA 58.646 52.632 7.64 0.00 43.80 4.92
7002 7340 2.101783 CCAACTCATGGCTTTGGCATA 58.898 47.619 6.30 0.00 47.00 3.14
7003 7341 2.696707 CCAACTCATGGCTTTGGCATAT 59.303 45.455 6.30 0.00 47.00 1.78
7004 7342 3.491964 CCAACTCATGGCTTTGGCATATG 60.492 47.826 6.30 0.00 47.00 1.78
7005 7343 2.313317 ACTCATGGCTTTGGCATATGG 58.687 47.619 4.56 3.32 47.00 2.74
7006 7344 2.091720 ACTCATGGCTTTGGCATATGGA 60.092 45.455 4.56 0.41 47.00 3.41
7007 7345 3.162666 CTCATGGCTTTGGCATATGGAT 58.837 45.455 4.56 0.00 47.00 3.41
7008 7346 4.202599 ACTCATGGCTTTGGCATATGGATA 60.203 41.667 4.56 0.00 47.00 2.59
7009 7347 4.338012 TCATGGCTTTGGCATATGGATAG 58.662 43.478 4.56 0.00 47.00 2.08
7010 7348 2.517959 TGGCTTTGGCATATGGATAGC 58.482 47.619 4.56 0.00 40.87 2.97
7011 7349 2.158490 TGGCTTTGGCATATGGATAGCA 60.158 45.455 4.56 0.00 40.87 3.49
7012 7350 2.892852 GGCTTTGGCATATGGATAGCAA 59.107 45.455 4.56 0.00 40.87 3.91
7013 7351 3.057033 GGCTTTGGCATATGGATAGCAAG 60.057 47.826 4.56 0.00 40.87 4.01
7014 7352 3.571401 GCTTTGGCATATGGATAGCAAGT 59.429 43.478 4.56 0.00 38.54 3.16
7015 7353 4.038402 GCTTTGGCATATGGATAGCAAGTT 59.962 41.667 4.56 0.00 38.54 2.66
7016 7354 5.452356 GCTTTGGCATATGGATAGCAAGTTT 60.452 40.000 4.56 0.00 38.54 2.66
7017 7355 5.772825 TTGGCATATGGATAGCAAGTTTC 57.227 39.130 4.56 0.00 0.00 2.78
7018 7356 4.144297 TGGCATATGGATAGCAAGTTTCC 58.856 43.478 4.56 0.00 0.00 3.13
7019 7357 4.144297 GGCATATGGATAGCAAGTTTCCA 58.856 43.478 4.56 0.00 43.37 3.53
7020 7358 4.022849 GGCATATGGATAGCAAGTTTCCAC 60.023 45.833 4.56 0.00 42.09 4.02
7021 7359 4.823989 GCATATGGATAGCAAGTTTCCACT 59.176 41.667 4.56 0.00 42.09 4.00
7022 7360 5.049129 GCATATGGATAGCAAGTTTCCACTC 60.049 44.000 4.56 0.00 42.09 3.51
7023 7361 4.574674 ATGGATAGCAAGTTTCCACTCA 57.425 40.909 0.00 0.00 42.09 3.41
7024 7362 3.674997 TGGATAGCAAGTTTCCACTCAC 58.325 45.455 0.00 0.00 34.65 3.51
7025 7363 3.010420 GGATAGCAAGTTTCCACTCACC 58.990 50.000 0.00 0.00 30.45 4.02
7026 7364 2.561478 TAGCAAGTTTCCACTCACCC 57.439 50.000 0.00 0.00 30.45 4.61
7027 7365 0.178990 AGCAAGTTTCCACTCACCCC 60.179 55.000 0.00 0.00 30.45 4.95
7028 7366 0.178990 GCAAGTTTCCACTCACCCCT 60.179 55.000 0.00 0.00 30.45 4.79
7029 7367 1.609208 CAAGTTTCCACTCACCCCTG 58.391 55.000 0.00 0.00 30.45 4.45
7030 7368 1.133792 CAAGTTTCCACTCACCCCTGT 60.134 52.381 0.00 0.00 30.45 4.00
7031 7369 0.765510 AGTTTCCACTCACCCCTGTC 59.234 55.000 0.00 0.00 0.00 3.51
7032 7370 0.250770 GTTTCCACTCACCCCTGTCC 60.251 60.000 0.00 0.00 0.00 4.02
7033 7371 0.696143 TTTCCACTCACCCCTGTCCA 60.696 55.000 0.00 0.00 0.00 4.02
7034 7372 0.475632 TTCCACTCACCCCTGTCCAT 60.476 55.000 0.00 0.00 0.00 3.41
7035 7373 0.415830 TCCACTCACCCCTGTCCATA 59.584 55.000 0.00 0.00 0.00 2.74
7036 7374 0.833287 CCACTCACCCCTGTCCATAG 59.167 60.000 0.00 0.00 0.00 2.23
7037 7375 0.179000 CACTCACCCCTGTCCATAGC 59.821 60.000 0.00 0.00 0.00 2.97
7038 7376 0.983378 ACTCACCCCTGTCCATAGCC 60.983 60.000 0.00 0.00 0.00 3.93
7039 7377 0.982852 CTCACCCCTGTCCATAGCCA 60.983 60.000 0.00 0.00 0.00 4.75
7040 7378 0.982852 TCACCCCTGTCCATAGCCAG 60.983 60.000 0.00 0.00 0.00 4.85
7041 7379 2.378634 ACCCCTGTCCATAGCCAGC 61.379 63.158 0.00 0.00 0.00 4.85
7042 7380 2.074948 CCCCTGTCCATAGCCAGCT 61.075 63.158 0.00 0.00 0.00 4.24
7043 7381 1.449353 CCCTGTCCATAGCCAGCTC 59.551 63.158 0.00 0.00 0.00 4.09
7044 7382 1.053264 CCCTGTCCATAGCCAGCTCT 61.053 60.000 0.00 0.00 0.00 4.09
7045 7383 0.835941 CCTGTCCATAGCCAGCTCTT 59.164 55.000 0.00 0.00 0.00 2.85
7046 7384 1.202627 CCTGTCCATAGCCAGCTCTTC 60.203 57.143 0.00 0.00 0.00 2.87
7047 7385 0.461548 TGTCCATAGCCAGCTCTTCG 59.538 55.000 0.00 0.00 0.00 3.79
7048 7386 0.249657 GTCCATAGCCAGCTCTTCGG 60.250 60.000 0.00 0.00 0.00 4.30
7049 7387 0.687757 TCCATAGCCAGCTCTTCGGT 60.688 55.000 0.00 0.00 0.00 4.69
7050 7388 0.531532 CCATAGCCAGCTCTTCGGTG 60.532 60.000 0.00 0.00 40.77 4.94
7051 7389 0.461548 CATAGCCAGCTCTTCGGTGA 59.538 55.000 0.00 0.00 43.75 4.02
7052 7390 1.069823 CATAGCCAGCTCTTCGGTGAT 59.930 52.381 0.00 0.00 43.75 3.06
7053 7391 2.067365 TAGCCAGCTCTTCGGTGATA 57.933 50.000 0.00 0.00 43.75 2.15
7054 7392 0.461961 AGCCAGCTCTTCGGTGATAC 59.538 55.000 0.00 0.00 43.75 2.24
7055 7393 0.461961 GCCAGCTCTTCGGTGATACT 59.538 55.000 0.00 0.00 43.75 2.12
7056 7394 1.537135 GCCAGCTCTTCGGTGATACTC 60.537 57.143 0.00 0.00 43.75 2.59
7057 7395 1.067821 CCAGCTCTTCGGTGATACTCC 59.932 57.143 0.00 0.00 43.75 3.85
7058 7396 1.751351 CAGCTCTTCGGTGATACTCCA 59.249 52.381 0.00 0.00 43.75 3.86
7059 7397 2.166459 CAGCTCTTCGGTGATACTCCAA 59.834 50.000 0.00 0.00 43.75 3.53
7060 7398 3.034635 AGCTCTTCGGTGATACTCCAAT 58.965 45.455 0.00 0.00 0.00 3.16
7061 7399 3.068873 AGCTCTTCGGTGATACTCCAATC 59.931 47.826 0.00 0.00 0.00 2.67
7062 7400 3.800604 GCTCTTCGGTGATACTCCAATCC 60.801 52.174 0.00 0.00 0.00 3.01
7063 7401 3.639094 CTCTTCGGTGATACTCCAATCCT 59.361 47.826 0.00 0.00 0.00 3.24
7064 7402 4.030913 TCTTCGGTGATACTCCAATCCTT 58.969 43.478 0.00 0.00 0.00 3.36
7065 7403 4.469945 TCTTCGGTGATACTCCAATCCTTT 59.530 41.667 0.00 0.00 0.00 3.11
7066 7404 5.659525 TCTTCGGTGATACTCCAATCCTTTA 59.340 40.000 0.00 0.00 0.00 1.85
7067 7405 5.531122 TCGGTGATACTCCAATCCTTTAG 57.469 43.478 0.00 0.00 0.00 1.85
7068 7406 4.344102 TCGGTGATACTCCAATCCTTTAGG 59.656 45.833 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.626321 TGTCCCGCCTCAGTATTTTCA 59.374 47.619 0.00 0.00 0.00 2.69
57 58 0.537188 CGCCCTTCTACCTCATGTGT 59.463 55.000 0.00 0.00 0.00 3.72
110 111 0.895559 GTTCACTGGCCCCTTCCAAG 60.896 60.000 0.00 0.00 35.36 3.61
160 161 1.750018 CGATGAATGCTGCCACCCA 60.750 57.895 0.00 0.00 0.00 4.51
257 302 5.049267 GCACGGTATTCTCTTCTAGGTCTAG 60.049 48.000 0.00 0.00 34.56 2.43
634 703 2.044946 GCGAGGCCCATGGAAAGT 60.045 61.111 15.22 0.00 0.00 2.66
641 710 1.816863 CTGGTATACGCGAGGCCCAT 61.817 60.000 15.93 0.00 0.00 4.00
787 856 2.017049 CCGTCCCTTCTAAATTGCCAG 58.983 52.381 0.00 0.00 0.00 4.85
789 858 2.413310 TCCGTCCCTTCTAAATTGCC 57.587 50.000 0.00 0.00 0.00 4.52
1182 1251 4.517075 TGCAAAAATCCACAGTACGATGAA 59.483 37.500 0.00 0.00 0.00 2.57
1290 1359 4.059511 CAAAATGCTTTGCTGTCAATGGA 58.940 39.130 0.00 0.00 35.81 3.41
1608 1677 8.560124 AGAAACTGATGATAAATACTCCCTCT 57.440 34.615 0.00 0.00 0.00 3.69
1623 1692 9.396022 ACATTACCCAGTATAAAGAAACTGATG 57.604 33.333 4.11 3.03 44.79 3.07
1727 1796 3.788227 AGTTCAGTGCAGAATAACCCA 57.212 42.857 0.00 0.00 0.00 4.51
1731 1800 5.762711 TGCAAGTAAGTTCAGTGCAGAATAA 59.237 36.000 0.00 0.00 40.14 1.40
1814 1883 8.739461 CGACCAAACAGAAACAAAATAACTTAC 58.261 33.333 0.00 0.00 0.00 2.34
1896 1965 3.644265 TCCGCCTGCCATATTACTAAGAA 59.356 43.478 0.00 0.00 0.00 2.52
1998 2067 3.396946 AGGATGATATGTGTGGCTTGGAT 59.603 43.478 0.00 0.00 0.00 3.41
2138 2207 1.048601 AGTGGTCGTGGTCTTGTCAT 58.951 50.000 0.00 0.00 0.00 3.06
2174 2243 3.578688 CAGGACCAAAAACATTAGCTGC 58.421 45.455 0.00 0.00 0.00 5.25
2617 2790 2.249139 ACGTTAGCTGAAGGAAGAGGT 58.751 47.619 0.00 0.00 0.00 3.85
2621 2794 4.036380 ACCAAAAACGTTAGCTGAAGGAAG 59.964 41.667 0.00 0.00 0.00 3.46
2678 2851 4.524328 ACCAAAAACATTAGCTGGAGGAAG 59.476 41.667 0.00 0.00 0.00 3.46
2692 2865 2.361757 CACAGCTCCATGACCAAAAACA 59.638 45.455 0.00 0.00 0.00 2.83
2718 2891 0.960364 AACAGGCGCAATAGGTGGTG 60.960 55.000 10.83 0.00 0.00 4.17
2755 2928 0.324368 TAGTCACGGCTCCATGACCT 60.324 55.000 11.05 2.79 45.28 3.85
2917 3090 6.934048 ACCTGAAGAAGAGAAAGAACAAAG 57.066 37.500 0.00 0.00 0.00 2.77
3016 3189 5.126067 GCTTTGCCAGAATCTAATAGGTCA 58.874 41.667 0.00 0.00 0.00 4.02
3203 3376 4.463891 ACCAATTGGATTTGTGACTGGATC 59.536 41.667 31.22 0.00 38.94 3.36
3225 3398 2.552373 CCAAACCCAGTAGGAGTTCCAC 60.552 54.545 0.28 0.00 39.89 4.02
3286 3459 0.869880 GTTTGTTGAGCAACCGCCAC 60.870 55.000 10.54 0.00 40.46 5.01
3357 3530 6.772360 TTTATCTATGGATGTTGCAAGCAA 57.228 33.333 0.00 2.89 33.71 3.91
3666 3839 3.198068 ACATGCGTATTAGAGCTTGGTG 58.802 45.455 0.00 0.00 41.13 4.17
3860 4051 0.331278 CTTAGGTCCCCACATGGCAA 59.669 55.000 0.00 0.00 0.00 4.52
3884 4075 8.213518 ACTAGTGCGACATGAAATAATCAAAT 57.786 30.769 0.00 0.00 42.54 2.32
3904 4095 3.945285 CCGCCATCCATTTAACAACTAGT 59.055 43.478 0.00 0.00 0.00 2.57
3964 4155 7.990886 TCAGTTTTTAAGACCTTCTAAGAGCAA 59.009 33.333 0.00 0.00 0.00 3.91
4261 4457 3.488310 GCTGCAAAGTCACAGTTGATTTG 59.512 43.478 0.00 0.00 32.32 2.32
4366 4562 0.811616 GCAGGTTCTCCTACGCCATG 60.812 60.000 0.00 0.00 43.07 3.66
4398 4595 4.623595 TGCAAACGAAACTGAAAAGGTTTC 59.376 37.500 8.66 8.66 45.05 2.78
4551 4756 0.473755 TTTCTGAAGGTGCTGGCTCA 59.526 50.000 0.00 0.00 0.00 4.26
4555 4760 3.438087 CACAGTATTTCTGAAGGTGCTGG 59.562 47.826 19.13 10.02 46.27 4.85
4806 5011 6.093357 CCAACCTTGCAAACAAACAACTTTAT 59.907 34.615 0.00 0.00 34.74 1.40
5018 5224 4.107622 CAACAAAGCAAGACCAAAGTCAG 58.892 43.478 0.00 0.00 46.15 3.51
5036 5242 3.392947 TGAAACCCATCTACTGTCCAACA 59.607 43.478 0.00 0.00 0.00 3.33
5129 5337 1.827792 TTCACCTTTTCTCCTGGGGA 58.172 50.000 0.00 0.00 0.00 4.81
5404 5656 6.378661 TGATGGTATAAGAATGAGATGGGG 57.621 41.667 0.00 0.00 0.00 4.96
5435 5688 4.247267 TCCATGCTGCAAGAAAGAAAAG 57.753 40.909 6.36 0.00 34.07 2.27
5507 5760 1.195115 ACTCTGCTATTTCCTCGCCA 58.805 50.000 0.00 0.00 0.00 5.69
5694 5947 2.505819 ACCTGACATAGTGACATTCCCC 59.494 50.000 0.00 0.00 0.00 4.81
5786 6039 4.222114 GCTTCAGTAATGTCACAAAGTGC 58.778 43.478 0.00 0.00 32.98 4.40
5907 6160 2.372690 CCGTCGACCTTGAGCAACG 61.373 63.158 10.58 0.00 0.00 4.10
5922 6175 4.321675 GCCAATTTCTTTGTGATTACCCGT 60.322 41.667 0.00 0.00 33.15 5.28
5947 6200 0.756294 TGAGCAACGAGAAGGAACCA 59.244 50.000 0.00 0.00 0.00 3.67
5948 6201 1.801178 CTTGAGCAACGAGAAGGAACC 59.199 52.381 0.00 0.00 31.94 3.62
6068 6321 0.321671 TAGCCAGGAGAACACAGTGC 59.678 55.000 0.00 0.00 0.00 4.40
6069 6322 2.419297 GGATAGCCAGGAGAACACAGTG 60.419 54.545 0.00 0.00 0.00 3.66
6070 6323 1.834263 GGATAGCCAGGAGAACACAGT 59.166 52.381 0.00 0.00 0.00 3.55
6071 6324 2.114616 AGGATAGCCAGGAGAACACAG 58.885 52.381 0.00 0.00 36.29 3.66
6072 6325 1.833630 CAGGATAGCCAGGAGAACACA 59.166 52.381 0.00 0.00 36.29 3.72
6073 6326 2.111384 TCAGGATAGCCAGGAGAACAC 58.889 52.381 0.00 0.00 36.29 3.32
6074 6327 2.550277 TCAGGATAGCCAGGAGAACA 57.450 50.000 0.00 0.00 36.29 3.18
6075 6328 3.645687 AGATTCAGGATAGCCAGGAGAAC 59.354 47.826 0.00 0.00 36.29 3.01
6077 6330 3.627041 AGATTCAGGATAGCCAGGAGA 57.373 47.619 0.00 0.00 36.29 3.71
6078 6331 4.640364 GAAAGATTCAGGATAGCCAGGAG 58.360 47.826 0.00 0.00 36.29 3.69
6079 6332 3.070159 CGAAAGATTCAGGATAGCCAGGA 59.930 47.826 0.00 0.00 36.29 3.86
6080 6333 3.397482 CGAAAGATTCAGGATAGCCAGG 58.603 50.000 0.00 0.00 36.29 4.45
6220 6476 3.975312 TCCTATCTACGAAGAGACTCCCT 59.025 47.826 0.00 0.00 34.49 4.20
6291 6551 4.885325 AGAAAACTAGCAAGTCCGGAAAAA 59.115 37.500 5.23 0.00 33.75 1.94
6292 6552 4.457466 AGAAAACTAGCAAGTCCGGAAAA 58.543 39.130 5.23 0.00 33.75 2.29
6293 6553 4.081322 AGAAAACTAGCAAGTCCGGAAA 57.919 40.909 5.23 0.00 33.75 3.13
6294 6554 3.764237 AGAAAACTAGCAAGTCCGGAA 57.236 42.857 5.23 0.00 33.75 4.30
6295 6555 3.764237 AAGAAAACTAGCAAGTCCGGA 57.236 42.857 0.00 0.00 33.75 5.14
6296 6556 4.036380 ACAAAAGAAAACTAGCAAGTCCGG 59.964 41.667 0.00 0.00 33.75 5.14
6297 6557 4.970003 CACAAAAGAAAACTAGCAAGTCCG 59.030 41.667 0.00 0.00 33.75 4.79
6298 6558 5.891451 ACACAAAAGAAAACTAGCAAGTCC 58.109 37.500 0.00 0.00 33.75 3.85
6299 6559 5.677178 CGACACAAAAGAAAACTAGCAAGTC 59.323 40.000 0.00 0.00 33.75 3.01
6300 6560 5.353123 TCGACACAAAAGAAAACTAGCAAGT 59.647 36.000 0.00 0.00 37.65 3.16
6301 6561 5.806286 TCGACACAAAAGAAAACTAGCAAG 58.194 37.500 0.00 0.00 0.00 4.01
6302 6562 5.729454 GCTCGACACAAAAGAAAACTAGCAA 60.729 40.000 0.00 0.00 0.00 3.91
6303 6563 4.260620 GCTCGACACAAAAGAAAACTAGCA 60.261 41.667 0.00 0.00 0.00 3.49
6304 6564 4.024809 AGCTCGACACAAAAGAAAACTAGC 60.025 41.667 0.00 0.00 0.00 3.42
6345 6610 1.009903 TAACGTCGTGGCGGTGAATG 61.010 55.000 0.00 0.00 35.98 2.67
6346 6611 0.108520 ATAACGTCGTGGCGGTGAAT 60.109 50.000 0.00 0.00 35.98 2.57
6347 6612 0.733566 GATAACGTCGTGGCGGTGAA 60.734 55.000 0.00 0.00 35.98 3.18
6373 6638 3.511146 ACATAACCCAACAAGCATCAAGG 59.489 43.478 0.00 0.00 0.00 3.61
6376 6641 2.230992 GCACATAACCCAACAAGCATCA 59.769 45.455 0.00 0.00 0.00 3.07
6404 6669 6.462067 CCAGGTCAAAAGAAGAAAAATCAGCT 60.462 38.462 0.00 0.00 0.00 4.24
6425 6690 2.413837 CCTCACGTAGAAACAACCAGG 58.586 52.381 0.00 0.00 0.00 4.45
6480 6778 0.031585 GAAACGGTGTGGGAAAAGCC 59.968 55.000 0.00 0.00 0.00 4.35
6694 7004 8.531982 TGACTGTGTAAGCTTAATATTCTGACT 58.468 33.333 7.99 0.00 0.00 3.41
6695 7005 8.703604 TGACTGTGTAAGCTTAATATTCTGAC 57.296 34.615 7.99 0.00 0.00 3.51
6696 7006 9.719355 TTTGACTGTGTAAGCTTAATATTCTGA 57.281 29.630 7.99 0.00 0.00 3.27
6750 7081 3.006967 ACTTGCAATTACGACTCCAGACT 59.993 43.478 0.00 0.00 0.00 3.24
6751 7082 3.326747 ACTTGCAATTACGACTCCAGAC 58.673 45.455 0.00 0.00 0.00 3.51
6752 7083 3.678056 ACTTGCAATTACGACTCCAGA 57.322 42.857 0.00 0.00 0.00 3.86
6753 7084 4.749245 AAACTTGCAATTACGACTCCAG 57.251 40.909 0.00 0.00 0.00 3.86
6754 7085 5.508200 AAAAACTTGCAATTACGACTCCA 57.492 34.783 0.00 0.00 0.00 3.86
6755 7086 6.087687 GCTTAAAAACTTGCAATTACGACTCC 59.912 38.462 0.00 0.00 0.00 3.85
6756 7087 6.183359 CGCTTAAAAACTTGCAATTACGACTC 60.183 38.462 0.00 0.00 0.00 3.36
6765 7103 3.119101 TGAACCCGCTTAAAAACTTGCAA 60.119 39.130 0.00 0.00 0.00 4.08
6848 7186 6.353323 CCCCACATTCAAAAACTACCTTTTT 58.647 36.000 0.00 0.00 41.88 1.94
6849 7187 5.686387 GCCCCACATTCAAAAACTACCTTTT 60.686 40.000 0.00 0.00 33.13 2.27
6850 7188 4.202315 GCCCCACATTCAAAAACTACCTTT 60.202 41.667 0.00 0.00 0.00 3.11
6851 7189 3.323691 GCCCCACATTCAAAAACTACCTT 59.676 43.478 0.00 0.00 0.00 3.50
6852 7190 2.897326 GCCCCACATTCAAAAACTACCT 59.103 45.455 0.00 0.00 0.00 3.08
6853 7191 2.352323 CGCCCCACATTCAAAAACTACC 60.352 50.000 0.00 0.00 0.00 3.18
6854 7192 2.924880 GCGCCCCACATTCAAAAACTAC 60.925 50.000 0.00 0.00 0.00 2.73
6855 7193 1.271102 GCGCCCCACATTCAAAAACTA 59.729 47.619 0.00 0.00 0.00 2.24
6856 7194 0.033366 GCGCCCCACATTCAAAAACT 59.967 50.000 0.00 0.00 0.00 2.66
6857 7195 0.948623 GGCGCCCCACATTCAAAAAC 60.949 55.000 18.11 0.00 0.00 2.43
6858 7196 1.369321 GGCGCCCCACATTCAAAAA 59.631 52.632 18.11 0.00 0.00 1.94
6859 7197 1.190833 ATGGCGCCCCACATTCAAAA 61.191 50.000 26.77 0.00 45.77 2.44
6860 7198 1.190833 AATGGCGCCCCACATTCAAA 61.191 50.000 26.77 0.00 45.77 2.69
6861 7199 1.608918 AATGGCGCCCCACATTCAA 60.609 52.632 26.77 0.73 45.77 2.69
6862 7200 2.037049 AATGGCGCCCCACATTCA 59.963 55.556 26.77 1.65 45.77 2.57
6863 7201 2.495866 CAATGGCGCCCCACATTC 59.504 61.111 26.77 0.00 45.77 2.67
6864 7202 3.773404 GCAATGGCGCCCCACATT 61.773 61.111 26.77 14.36 45.77 2.71
6867 7205 4.440127 CTTGCAATGGCGCCCCAC 62.440 66.667 26.77 11.62 45.77 4.61
6869 7207 2.730066 AAAACTTGCAATGGCGCCCC 62.730 55.000 26.77 10.34 45.35 5.80
6870 7208 0.037790 TAAAACTTGCAATGGCGCCC 60.038 50.000 26.77 9.02 45.35 6.13
6871 7209 1.726248 CTTAAAACTTGCAATGGCGCC 59.274 47.619 22.73 22.73 45.35 6.53
6872 7210 1.126662 GCTTAAAACTTGCAATGGCGC 59.873 47.619 0.00 0.00 45.35 6.53
6873 7211 2.409378 CAGCTTAAAACTTGCAATGGCG 59.591 45.455 0.00 0.00 45.35 5.69
6874 7212 2.738314 CCAGCTTAAAACTTGCAATGGC 59.262 45.455 0.00 0.00 41.68 4.40
6875 7213 4.255833 TCCAGCTTAAAACTTGCAATGG 57.744 40.909 0.00 1.07 0.00 3.16
6876 7214 5.390145 GCAATCCAGCTTAAAACTTGCAATG 60.390 40.000 0.00 0.00 37.89 2.82
6877 7215 4.692155 GCAATCCAGCTTAAAACTTGCAAT 59.308 37.500 0.00 0.00 37.89 3.56
6878 7216 4.057432 GCAATCCAGCTTAAAACTTGCAA 58.943 39.130 0.00 0.00 37.89 4.08
6879 7217 3.069300 TGCAATCCAGCTTAAAACTTGCA 59.931 39.130 10.21 10.21 43.51 4.08
6880 7218 3.652274 TGCAATCCAGCTTAAAACTTGC 58.348 40.909 0.00 0.00 38.33 4.01
6881 7219 5.291971 AGTTGCAATCCAGCTTAAAACTTG 58.708 37.500 0.59 0.00 29.94 3.16
6882 7220 5.535753 AGTTGCAATCCAGCTTAAAACTT 57.464 34.783 0.59 0.00 29.94 2.66
6883 7221 6.840780 ATAGTTGCAATCCAGCTTAAAACT 57.159 33.333 0.59 0.00 36.35 2.66
6884 7222 7.535139 TGTATAGTTGCAATCCAGCTTAAAAC 58.465 34.615 0.59 0.00 36.35 2.43
6885 7223 7.695480 TGTATAGTTGCAATCCAGCTTAAAA 57.305 32.000 0.59 0.00 36.35 1.52
6886 7224 7.175816 TGTTGTATAGTTGCAATCCAGCTTAAA 59.824 33.333 0.59 0.00 36.35 1.52
6887 7225 6.657117 TGTTGTATAGTTGCAATCCAGCTTAA 59.343 34.615 0.59 0.00 36.35 1.85
6888 7226 6.176896 TGTTGTATAGTTGCAATCCAGCTTA 58.823 36.000 0.59 0.00 36.35 3.09
6889 7227 5.009631 TGTTGTATAGTTGCAATCCAGCTT 58.990 37.500 0.59 0.00 36.35 3.74
6890 7228 4.588899 TGTTGTATAGTTGCAATCCAGCT 58.411 39.130 0.59 0.00 38.62 4.24
6891 7229 4.963276 TGTTGTATAGTTGCAATCCAGC 57.037 40.909 0.59 0.00 29.89 4.85
6892 7230 6.252967 TGTTGTTGTATAGTTGCAATCCAG 57.747 37.500 0.59 0.00 29.89 3.86
6893 7231 6.039829 TGTTGTTGTTGTATAGTTGCAATCCA 59.960 34.615 0.59 0.00 29.89 3.41
6894 7232 6.442952 TGTTGTTGTTGTATAGTTGCAATCC 58.557 36.000 0.59 0.00 29.89 3.01
6895 7233 7.433719 TGTTGTTGTTGTTGTATAGTTGCAATC 59.566 33.333 0.59 0.00 29.89 2.67
6896 7234 7.261325 TGTTGTTGTTGTTGTATAGTTGCAAT 58.739 30.769 0.59 0.00 29.89 3.56
6897 7235 6.621613 TGTTGTTGTTGTTGTATAGTTGCAA 58.378 32.000 0.00 0.00 0.00 4.08
6898 7236 6.196079 TGTTGTTGTTGTTGTATAGTTGCA 57.804 33.333 0.00 0.00 0.00 4.08
6899 7237 7.513190 TTTGTTGTTGTTGTTGTATAGTTGC 57.487 32.000 0.00 0.00 0.00 4.17
6900 7238 7.253950 GGCTTTGTTGTTGTTGTTGTATAGTTG 60.254 37.037 0.00 0.00 0.00 3.16
6901 7239 6.754675 GGCTTTGTTGTTGTTGTTGTATAGTT 59.245 34.615 0.00 0.00 0.00 2.24
6902 7240 6.096282 AGGCTTTGTTGTTGTTGTTGTATAGT 59.904 34.615 0.00 0.00 0.00 2.12
6903 7241 6.503524 AGGCTTTGTTGTTGTTGTTGTATAG 58.496 36.000 0.00 0.00 0.00 1.31
6904 7242 6.458232 AGGCTTTGTTGTTGTTGTTGTATA 57.542 33.333 0.00 0.00 0.00 1.47
6905 7243 5.337578 AGGCTTTGTTGTTGTTGTTGTAT 57.662 34.783 0.00 0.00 0.00 2.29
6906 7244 4.792521 AGGCTTTGTTGTTGTTGTTGTA 57.207 36.364 0.00 0.00 0.00 2.41
6907 7245 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
6908 7246 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
6909 7247 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
6910 7248 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
6911 7249 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
6912 7250 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
6913 7251 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
6914 7252 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
6915 7253 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
6916 7254 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
6917 7255 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
6918 7256 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
6919 7257 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
6920 7258 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
6921 7259 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
6922 7260 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
6923 7261 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
6924 7262 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
6935 7273 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
6936 7274 3.887916 TTAGCCTACCCCAACTTGTTT 57.112 42.857 0.00 0.00 0.00 2.83
6937 7275 3.396611 TCTTTAGCCTACCCCAACTTGTT 59.603 43.478 0.00 0.00 0.00 2.83
6938 7276 2.983898 TCTTTAGCCTACCCCAACTTGT 59.016 45.455 0.00 0.00 0.00 3.16
6939 7277 3.713826 TCTTTAGCCTACCCCAACTTG 57.286 47.619 0.00 0.00 0.00 3.16
6940 7278 3.850173 TCATCTTTAGCCTACCCCAACTT 59.150 43.478 0.00 0.00 0.00 2.66
6941 7279 3.460825 TCATCTTTAGCCTACCCCAACT 58.539 45.455 0.00 0.00 0.00 3.16
6942 7280 3.926058 TCATCTTTAGCCTACCCCAAC 57.074 47.619 0.00 0.00 0.00 3.77
6943 7281 4.569015 GGTTTCATCTTTAGCCTACCCCAA 60.569 45.833 0.00 0.00 0.00 4.12
6944 7282 3.053917 GGTTTCATCTTTAGCCTACCCCA 60.054 47.826 0.00 0.00 0.00 4.96
6945 7283 3.552875 GGTTTCATCTTTAGCCTACCCC 58.447 50.000 0.00 0.00 0.00 4.95
6946 7284 3.053917 TGGGTTTCATCTTTAGCCTACCC 60.054 47.826 0.00 0.00 43.39 3.69
6947 7285 4.230745 TGGGTTTCATCTTTAGCCTACC 57.769 45.455 0.00 0.00 0.00 3.18
6948 7286 7.280356 TCTTATGGGTTTCATCTTTAGCCTAC 58.720 38.462 0.00 0.00 37.30 3.18
6949 7287 7.446106 TCTTATGGGTTTCATCTTTAGCCTA 57.554 36.000 0.00 0.00 37.30 3.93
6950 7288 6.327386 TCTTATGGGTTTCATCTTTAGCCT 57.673 37.500 0.00 0.00 37.30 4.58
6951 7289 7.001073 AGATCTTATGGGTTTCATCTTTAGCC 58.999 38.462 0.00 0.00 37.30 3.93
6952 7290 8.457238 AAGATCTTATGGGTTTCATCTTTAGC 57.543 34.615 6.06 0.00 37.30 3.09
6954 7292 9.973661 TGAAAGATCTTATGGGTTTCATCTTTA 57.026 29.630 8.75 0.00 37.30 1.85
6955 7293 8.884124 TGAAAGATCTTATGGGTTTCATCTTT 57.116 30.769 8.75 4.74 37.30 2.52
6956 7294 8.743714 GTTGAAAGATCTTATGGGTTTCATCTT 58.256 33.333 8.75 0.00 37.08 2.40
6957 7295 7.340487 GGTTGAAAGATCTTATGGGTTTCATCT 59.660 37.037 8.75 0.00 37.08 2.90
6958 7296 7.122650 TGGTTGAAAGATCTTATGGGTTTCATC 59.877 37.037 8.75 6.07 37.08 2.92
6959 7297 6.953520 TGGTTGAAAGATCTTATGGGTTTCAT 59.046 34.615 8.75 0.00 37.08 2.57
6960 7298 6.310941 TGGTTGAAAGATCTTATGGGTTTCA 58.689 36.000 8.75 4.02 35.78 2.69
6961 7299 6.834168 TGGTTGAAAGATCTTATGGGTTTC 57.166 37.500 8.75 1.17 0.00 2.78
6962 7300 6.782494 AGTTGGTTGAAAGATCTTATGGGTTT 59.218 34.615 8.75 0.00 0.00 3.27
6963 7301 6.314917 AGTTGGTTGAAAGATCTTATGGGTT 58.685 36.000 8.75 0.00 0.00 4.11
6964 7302 5.892348 AGTTGGTTGAAAGATCTTATGGGT 58.108 37.500 8.75 0.00 0.00 4.51
6965 7303 5.945784 TGAGTTGGTTGAAAGATCTTATGGG 59.054 40.000 8.75 0.00 0.00 4.00
6966 7304 7.415989 CCATGAGTTGGTTGAAAGATCTTATGG 60.416 40.741 8.75 9.41 40.99 2.74
6967 7305 7.478322 CCATGAGTTGGTTGAAAGATCTTATG 58.522 38.462 8.75 4.13 40.99 1.90
6968 7306 7.636150 CCATGAGTTGGTTGAAAGATCTTAT 57.364 36.000 8.75 0.00 40.99 1.73
6970 7308 5.972107 CCATGAGTTGGTTGAAAGATCTT 57.028 39.130 0.88 0.88 40.99 2.40
6983 7321 3.491964 CCATATGCCAAAGCCATGAGTTG 60.492 47.826 0.00 0.00 38.69 3.16
6984 7322 2.696707 CCATATGCCAAAGCCATGAGTT 59.303 45.455 0.00 0.00 38.69 3.01
6985 7323 2.091720 TCCATATGCCAAAGCCATGAGT 60.092 45.455 0.00 0.00 38.69 3.41
6986 7324 2.589720 TCCATATGCCAAAGCCATGAG 58.410 47.619 0.00 0.00 38.69 2.90
6987 7325 2.752075 TCCATATGCCAAAGCCATGA 57.248 45.000 0.00 0.00 38.69 3.07
6988 7326 3.119245 GCTATCCATATGCCAAAGCCATG 60.119 47.826 0.00 0.00 38.69 3.66
6989 7327 3.094572 GCTATCCATATGCCAAAGCCAT 58.905 45.455 0.00 0.00 38.69 4.40
6990 7328 2.158490 TGCTATCCATATGCCAAAGCCA 60.158 45.455 12.26 2.55 38.69 4.75
6991 7329 2.517959 TGCTATCCATATGCCAAAGCC 58.482 47.619 12.26 0.71 38.69 4.35
6992 7330 3.571401 ACTTGCTATCCATATGCCAAAGC 59.429 43.478 0.00 4.15 40.48 3.51
6993 7331 5.779529 AACTTGCTATCCATATGCCAAAG 57.220 39.130 0.00 0.00 0.00 2.77
6994 7332 5.068987 GGAAACTTGCTATCCATATGCCAAA 59.931 40.000 0.00 0.00 33.30 3.28
6995 7333 4.584325 GGAAACTTGCTATCCATATGCCAA 59.416 41.667 0.00 0.00 33.30 4.52
6996 7334 4.144297 GGAAACTTGCTATCCATATGCCA 58.856 43.478 0.00 0.00 33.30 4.92
6997 7335 4.022849 GTGGAAACTTGCTATCCATATGCC 60.023 45.833 0.00 0.00 44.55 4.40
6998 7336 4.823989 AGTGGAAACTTGCTATCCATATGC 59.176 41.667 0.00 0.00 44.55 3.14
6999 7337 6.017605 GTGAGTGGAAACTTGCTATCCATATG 60.018 42.308 0.00 0.00 44.55 1.78
7000 7338 6.058183 GTGAGTGGAAACTTGCTATCCATAT 58.942 40.000 0.00 0.00 44.55 1.78
7001 7339 5.428253 GTGAGTGGAAACTTGCTATCCATA 58.572 41.667 0.00 0.00 44.55 2.74
7002 7340 4.265073 GTGAGTGGAAACTTGCTATCCAT 58.735 43.478 0.00 0.00 44.55 3.41
7003 7341 3.559171 GGTGAGTGGAAACTTGCTATCCA 60.559 47.826 0.00 0.00 40.84 3.41
7004 7342 3.010420 GGTGAGTGGAAACTTGCTATCC 58.990 50.000 0.00 0.00 0.00 2.59
7005 7343 3.010420 GGGTGAGTGGAAACTTGCTATC 58.990 50.000 0.00 0.00 0.00 2.08
7006 7344 2.290960 GGGGTGAGTGGAAACTTGCTAT 60.291 50.000 0.00 0.00 0.00 2.97
7007 7345 1.073284 GGGGTGAGTGGAAACTTGCTA 59.927 52.381 0.00 0.00 0.00 3.49
7008 7346 0.178990 GGGGTGAGTGGAAACTTGCT 60.179 55.000 0.00 0.00 0.00 3.91
7009 7347 0.178990 AGGGGTGAGTGGAAACTTGC 60.179 55.000 0.00 0.00 0.00 4.01
7010 7348 1.133792 ACAGGGGTGAGTGGAAACTTG 60.134 52.381 0.00 0.00 0.00 3.16
7011 7349 1.143073 GACAGGGGTGAGTGGAAACTT 59.857 52.381 0.00 0.00 0.00 2.66
7012 7350 0.765510 GACAGGGGTGAGTGGAAACT 59.234 55.000 0.00 0.00 0.00 2.66
7013 7351 0.250770 GGACAGGGGTGAGTGGAAAC 60.251 60.000 0.00 0.00 0.00 2.78
7014 7352 0.696143 TGGACAGGGGTGAGTGGAAA 60.696 55.000 0.00 0.00 0.00 3.13
7015 7353 0.475632 ATGGACAGGGGTGAGTGGAA 60.476 55.000 0.00 0.00 0.00 3.53
7016 7354 0.415830 TATGGACAGGGGTGAGTGGA 59.584 55.000 0.00 0.00 0.00 4.02
7017 7355 0.833287 CTATGGACAGGGGTGAGTGG 59.167 60.000 0.00 0.00 0.00 4.00
7018 7356 0.179000 GCTATGGACAGGGGTGAGTG 59.821 60.000 0.00 0.00 0.00 3.51
7019 7357 0.983378 GGCTATGGACAGGGGTGAGT 60.983 60.000 0.00 0.00 0.00 3.41
7020 7358 0.982852 TGGCTATGGACAGGGGTGAG 60.983 60.000 0.00 0.00 0.00 3.51
7021 7359 0.982852 CTGGCTATGGACAGGGGTGA 60.983 60.000 3.46 0.00 44.53 4.02
7022 7360 1.528824 CTGGCTATGGACAGGGGTG 59.471 63.158 3.46 0.00 44.53 4.61
7023 7361 4.073201 CTGGCTATGGACAGGGGT 57.927 61.111 3.46 0.00 44.53 4.95
7028 7366 0.461548 CGAAGAGCTGGCTATGGACA 59.538 55.000 0.00 0.00 0.00 4.02
7029 7367 0.249657 CCGAAGAGCTGGCTATGGAC 60.250 60.000 0.00 0.00 0.00 4.02
7030 7368 0.687757 ACCGAAGAGCTGGCTATGGA 60.688 55.000 0.00 0.00 0.00 3.41
7031 7369 0.531532 CACCGAAGAGCTGGCTATGG 60.532 60.000 0.00 0.00 0.00 2.74
7032 7370 0.461548 TCACCGAAGAGCTGGCTATG 59.538 55.000 0.00 0.00 0.00 2.23
7033 7371 1.418334 ATCACCGAAGAGCTGGCTAT 58.582 50.000 0.00 0.00 0.00 2.97
7034 7372 1.681793 GTATCACCGAAGAGCTGGCTA 59.318 52.381 0.00 0.00 0.00 3.93
7035 7373 0.461961 GTATCACCGAAGAGCTGGCT 59.538 55.000 0.00 0.00 0.00 4.75
7036 7374 0.461961 AGTATCACCGAAGAGCTGGC 59.538 55.000 0.00 0.00 0.00 4.85
7037 7375 1.067821 GGAGTATCACCGAAGAGCTGG 59.932 57.143 0.00 0.00 36.25 4.85
7038 7376 1.751351 TGGAGTATCACCGAAGAGCTG 59.249 52.381 0.00 0.00 36.25 4.24
7039 7377 2.145397 TGGAGTATCACCGAAGAGCT 57.855 50.000 0.00 0.00 36.25 4.09
7040 7378 2.961526 TTGGAGTATCACCGAAGAGC 57.038 50.000 0.00 0.00 36.25 4.09
7041 7379 3.639094 AGGATTGGAGTATCACCGAAGAG 59.361 47.826 0.00 0.00 36.25 2.85
7042 7380 3.643237 AGGATTGGAGTATCACCGAAGA 58.357 45.455 0.00 0.00 36.25 2.87
7043 7381 4.408182 AAGGATTGGAGTATCACCGAAG 57.592 45.455 0.00 0.00 36.25 3.79
7044 7382 4.837093 AAAGGATTGGAGTATCACCGAA 57.163 40.909 0.00 0.00 36.25 4.30
7045 7383 4.344102 CCTAAAGGATTGGAGTATCACCGA 59.656 45.833 0.00 0.00 34.60 4.69
7046 7384 4.632153 CCTAAAGGATTGGAGTATCACCG 58.368 47.826 0.00 0.00 34.60 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.