Multiple sequence alignment - TraesCS5A01G199100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G199100 chr5A 100.000 6802 0 0 1 6802 403895920 403902721 0.000000e+00 12562.0
1 TraesCS5A01G199100 chr5A 91.778 450 34 3 224 671 119062180 119061732 2.080000e-174 623.0
2 TraesCS5A01G199100 chr5A 86.667 225 27 2 2279 2501 688125413 688125636 5.270000e-61 246.0
3 TraesCS5A01G199100 chr5A 91.111 135 9 3 4674 4806 482027212 482027345 5.420000e-41 180.0
4 TraesCS5A01G199100 chr5A 78.922 204 24 8 698 883 425488914 425488712 3.330000e-23 121.0
5 TraesCS5A01G199100 chr2A 99.587 6298 22 2 1 6294 306686899 306680602 0.000000e+00 11483.0
6 TraesCS5A01G199100 chr2A 99.208 6312 31 2 1 6294 69254116 69260426 0.000000e+00 11361.0
7 TraesCS5A01G199100 chr2A 83.576 755 84 11 1815 2554 26027741 26028470 0.000000e+00 671.0
8 TraesCS5A01G199100 chr2A 91.391 453 36 3 221 671 43440380 43440831 9.690000e-173 617.0
9 TraesCS5A01G199100 chr2A 81.280 422 58 11 5440 5849 347871778 347872190 8.510000e-84 322.0
10 TraesCS5A01G199100 chr2A 83.158 95 13 2 6314 6405 12261883 12261977 4.370000e-12 84.2
11 TraesCS5A01G199100 chr2A 83.158 95 13 2 6314 6405 12269855 12269949 4.370000e-12 84.2
12 TraesCS5A01G199100 chr3A 99.505 3230 14 1 1 3228 405844997 405841768 0.000000e+00 5875.0
13 TraesCS5A01G199100 chr3A 99.415 3076 12 3 3224 6294 405833217 405830143 0.000000e+00 5576.0
14 TraesCS5A01G199100 chr3A 85.856 806 87 15 72 860 95901320 95900525 0.000000e+00 832.0
15 TraesCS5A01G199100 chr3A 87.536 698 68 12 1058 1746 414406856 414406169 0.000000e+00 789.0
16 TraesCS5A01G199100 chr3A 84.035 451 54 5 1949 2393 644202672 644203110 1.060000e-112 418.0
17 TraesCS5A01G199100 chr3A 84.711 242 16 15 5626 5858 455227976 455227747 8.880000e-54 222.0
18 TraesCS5A01G199100 chr3A 88.889 171 16 3 661 829 558979698 558979867 2.490000e-49 207.0
19 TraesCS5A01G199100 chr3A 90.370 135 9 4 4674 4806 672876261 672876393 2.520000e-39 174.0
20 TraesCS5A01G199100 chr3A 92.593 108 8 0 4047 4154 42045565 42045458 9.130000e-34 156.0
21 TraesCS5A01G199100 chr3B 96.856 3308 60 8 2556 5853 561700417 561703690 0.000000e+00 5493.0
22 TraesCS5A01G199100 chr3B 98.082 2555 47 2 1 2554 561697705 561700258 0.000000e+00 4446.0
23 TraesCS5A01G199100 chr3B 88.951 2335 157 38 3577 5853 793141591 793143882 0.000000e+00 2789.0
24 TraesCS5A01G199100 chr3B 81.063 903 131 26 4936 5810 412402880 412401990 0.000000e+00 684.0
25 TraesCS5A01G199100 chr3B 85.597 243 13 15 5626 5858 449164742 449164512 1.140000e-57 235.0
26 TraesCS5A01G199100 chr3B 89.431 123 8 3 3232 3350 774716298 774716419 4.250000e-32 150.0
27 TraesCS5A01G199100 chr6A 97.300 2556 62 5 1 2554 602826801 602829351 0.000000e+00 4331.0
28 TraesCS5A01G199100 chr6A 97.017 1877 52 2 2556 4429 602829510 602831385 0.000000e+00 3153.0
29 TraesCS5A01G199100 chr6A 86.402 831 85 15 72 884 383585152 383584332 0.000000e+00 883.0
30 TraesCS5A01G199100 chr6A 86.282 831 86 15 72 884 46572504 46571684 0.000000e+00 878.0
31 TraesCS5A01G199100 chrUn 99.507 1622 8 0 3633 5254 384178460 384180081 0.000000e+00 2952.0
32 TraesCS5A01G199100 chrUn 90.431 209 18 2 1550 1756 76352938 76353146 2.420000e-69 274.0
33 TraesCS5A01G199100 chrUn 90.431 209 18 2 1550 1756 233823630 233823838 2.420000e-69 274.0
34 TraesCS5A01G199100 chr5B 97.959 441 9 0 5854 6294 678454812 678455252 0.000000e+00 765.0
35 TraesCS5A01G199100 chr5B 81.818 902 125 22 4936 5810 350710553 350709664 0.000000e+00 721.0
36 TraesCS5A01G199100 chr5B 91.391 453 34 4 221 671 697071500 697071949 3.490000e-172 616.0
37 TraesCS5A01G199100 chr5B 91.156 441 36 2 5854 6294 27381443 27381880 4.540000e-166 595.0
38 TraesCS5A01G199100 chr5B 87.451 255 26 6 2556 2805 672541152 672540899 8.630000e-74 289.0
39 TraesCS5A01G199100 chr5B 83.082 331 39 6 5529 5851 415054874 415055195 1.120000e-72 285.0
40 TraesCS5A01G199100 chr5B 90.860 186 15 2 3360 3543 505361016 505361201 1.460000e-61 248.0
41 TraesCS5A01G199100 chr5B 85.965 228 25 6 3130 3350 533416995 533417222 3.170000e-58 237.0
42 TraesCS5A01G199100 chr5B 79.830 352 41 18 3699 4026 347127649 347127994 5.310000e-56 230.0
43 TraesCS5A01G199100 chr7B 86.434 715 73 12 1058 1756 659831912 659832618 0.000000e+00 761.0
44 TraesCS5A01G199100 chr7B 82.378 471 68 10 4936 5397 524611207 524611671 4.940000e-106 396.0
45 TraesCS5A01G199100 chr7B 85.597 243 13 15 5626 5858 353328535 353328765 1.140000e-57 235.0
46 TraesCS5A01G199100 chr6B 93.424 441 25 3 5854 6294 176215908 176215472 0.000000e+00 651.0
47 TraesCS5A01G199100 chr6B 93.424 441 25 3 5854 6294 176240690 176240254 0.000000e+00 651.0
48 TraesCS5A01G199100 chr6B 92.744 441 28 3 5854 6294 176154602 176154166 9.620000e-178 634.0
49 TraesCS5A01G199100 chr6B 92.744 441 28 3 5854 6294 176178572 176178136 9.620000e-178 634.0
50 TraesCS5A01G199100 chr6B 91.455 433 31 6 455 884 49382308 49381879 2.110000e-164 590.0
51 TraesCS5A01G199100 chr6B 87.795 254 27 4 2556 2805 599819473 599819726 1.860000e-75 294.0
52 TraesCS5A01G199100 chr6B 84.052 232 26 5 5626 5850 536849880 536849653 5.340000e-51 213.0
53 TraesCS5A01G199100 chr2B 91.150 452 35 5 224 671 161446244 161445794 5.830000e-170 608.0
54 TraesCS5A01G199100 chr2B 87.795 254 27 4 2556 2805 183534428 183534175 1.860000e-75 294.0
55 TraesCS5A01G199100 chr7A 84.270 445 43 11 1955 2393 374542690 374542267 6.350000e-110 409.0
56 TraesCS5A01G199100 chr7A 93.443 122 7 1 4674 4794 731392157 731392036 5.420000e-41 180.0
57 TraesCS5A01G199100 chr7A 89.431 123 9 2 3232 3350 121783571 121783693 1.180000e-32 152.0
58 TraesCS5A01G199100 chr4A 88.073 327 39 0 4043 4369 222106844 222107170 8.270000e-104 388.0
59 TraesCS5A01G199100 chr4A 95.238 63 2 1 1014 1075 693877369 693877307 1.560000e-16 99.0
60 TraesCS5A01G199100 chr6D 83.649 422 49 11 5440 5852 425060481 425060891 4.980000e-101 379.0
61 TraesCS5A01G199100 chr5D 94.898 196 10 0 6607 6802 478592643 478592838 2.380000e-79 307.0
62 TraesCS5A01G199100 chr2D 86.716 271 33 2 2279 2547 117801407 117801676 1.430000e-76 298.0
63 TraesCS5A01G199100 chr3D 86.000 250 31 4 2560 2805 550355777 550356026 1.450000e-66 265.0
64 TraesCS5A01G199100 chr1B 90.964 166 14 1 3377 3541 562727229 562727064 8.880000e-54 222.0
65 TraesCS5A01G199100 chr1B 88.710 124 9 3 3232 3350 562727811 562727688 5.500000e-31 147.0
66 TraesCS5A01G199100 chr1B 82.857 140 23 1 6294 6432 685904998 685905137 2.580000e-24 124.0
67 TraesCS5A01G199100 chr1B 91.837 49 4 0 6314 6362 530442260 530442212 1.220000e-07 69.4
68 TraesCS5A01G199100 chr4B 84.322 236 24 7 5626 5852 305510803 305510572 1.150000e-52 219.0
69 TraesCS5A01G199100 chr4B 86.500 200 23 2 2355 2554 241184998 241185193 4.130000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G199100 chr5A 403895920 403902721 6801 False 12562.0 12562 100.0000 1 6802 1 chr5A.!!$F1 6801
1 TraesCS5A01G199100 chr2A 306680602 306686899 6297 True 11483.0 11483 99.5870 1 6294 1 chr2A.!!$R1 6293
2 TraesCS5A01G199100 chr2A 69254116 69260426 6310 False 11361.0 11361 99.2080 1 6294 1 chr2A.!!$F5 6293
3 TraesCS5A01G199100 chr2A 26027741 26028470 729 False 671.0 671 83.5760 1815 2554 1 chr2A.!!$F3 739
4 TraesCS5A01G199100 chr3A 405841768 405844997 3229 True 5875.0 5875 99.5050 1 3228 1 chr3A.!!$R4 3227
5 TraesCS5A01G199100 chr3A 405830143 405833217 3074 True 5576.0 5576 99.4150 3224 6294 1 chr3A.!!$R3 3070
6 TraesCS5A01G199100 chr3A 95900525 95901320 795 True 832.0 832 85.8560 72 860 1 chr3A.!!$R2 788
7 TraesCS5A01G199100 chr3A 414406169 414406856 687 True 789.0 789 87.5360 1058 1746 1 chr3A.!!$R5 688
8 TraesCS5A01G199100 chr3B 561697705 561703690 5985 False 4969.5 5493 97.4690 1 5853 2 chr3B.!!$F3 5852
9 TraesCS5A01G199100 chr3B 793141591 793143882 2291 False 2789.0 2789 88.9510 3577 5853 1 chr3B.!!$F2 2276
10 TraesCS5A01G199100 chr3B 412401990 412402880 890 True 684.0 684 81.0630 4936 5810 1 chr3B.!!$R1 874
11 TraesCS5A01G199100 chr6A 602826801 602831385 4584 False 3742.0 4331 97.1585 1 4429 2 chr6A.!!$F1 4428
12 TraesCS5A01G199100 chr6A 383584332 383585152 820 True 883.0 883 86.4020 72 884 1 chr6A.!!$R2 812
13 TraesCS5A01G199100 chr6A 46571684 46572504 820 True 878.0 878 86.2820 72 884 1 chr6A.!!$R1 812
14 TraesCS5A01G199100 chrUn 384178460 384180081 1621 False 2952.0 2952 99.5070 3633 5254 1 chrUn.!!$F3 1621
15 TraesCS5A01G199100 chr5B 350709664 350710553 889 True 721.0 721 81.8180 4936 5810 1 chr5B.!!$R1 874
16 TraesCS5A01G199100 chr7B 659831912 659832618 706 False 761.0 761 86.4340 1058 1756 1 chr7B.!!$F3 698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1471 1501 0.260230 TTTGCCTTTCACAGGGGTCA 59.740 50.000 0.00 0.0 44.16 4.02 F
3753 4000 6.013553 AGCAGGCTCATAGATGATATCTTGTT 60.014 38.462 3.98 0.0 40.76 2.83 F
4207 4484 2.741612 CAGAAAATTGGCTGCGTTCAA 58.258 42.857 0.00 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3753 4000 1.828595 TCTAGGTAATCCACTGCGCAA 59.171 47.619 13.05 0.0 35.89 4.85 R
4662 4939 7.042791 GGTTATTGCATGGTATGGAAAATTTCG 60.043 37.037 0.00 0.0 43.81 3.46 R
6339 6654 0.028505 GCATGACCACATCATCACGC 59.971 55.000 0.00 0.0 45.52 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1471 1501 0.260230 TTTGCCTTTCACAGGGGTCA 59.740 50.000 0.00 0.00 44.16 4.02
3753 4000 6.013553 AGCAGGCTCATAGATGATATCTTGTT 60.014 38.462 3.98 0.00 40.76 2.83
4207 4484 2.741612 CAGAAAATTGGCTGCGTTCAA 58.258 42.857 0.00 0.00 0.00 2.69
4662 4939 8.921353 TCTAGAGTAGGTTATGTCTCCATTAC 57.079 38.462 0.00 0.00 32.29 1.89
6294 6609 0.108329 CGCAACCGGGTCATCTAGTT 60.108 55.000 6.32 0.00 0.00 2.24
6295 6610 1.653151 GCAACCGGGTCATCTAGTTC 58.347 55.000 6.32 0.00 0.00 3.01
6296 6611 1.207329 GCAACCGGGTCATCTAGTTCT 59.793 52.381 6.32 0.00 0.00 3.01
6297 6612 2.429610 GCAACCGGGTCATCTAGTTCTA 59.570 50.000 6.32 0.00 0.00 2.10
6298 6613 3.118884 GCAACCGGGTCATCTAGTTCTAA 60.119 47.826 6.32 0.00 0.00 2.10
6299 6614 4.683832 CAACCGGGTCATCTAGTTCTAAG 58.316 47.826 6.32 0.00 0.00 2.18
6300 6615 4.246712 ACCGGGTCATCTAGTTCTAAGA 57.753 45.455 6.32 0.00 0.00 2.10
6301 6616 4.607239 ACCGGGTCATCTAGTTCTAAGAA 58.393 43.478 6.32 0.00 0.00 2.52
6302 6617 5.209659 ACCGGGTCATCTAGTTCTAAGAAT 58.790 41.667 6.32 0.00 0.00 2.40
6303 6618 6.371278 ACCGGGTCATCTAGTTCTAAGAATA 58.629 40.000 6.32 0.00 0.00 1.75
6304 6619 6.490721 ACCGGGTCATCTAGTTCTAAGAATAG 59.509 42.308 6.32 0.00 0.00 1.73
6305 6620 6.071840 CCGGGTCATCTAGTTCTAAGAATAGG 60.072 46.154 0.00 0.00 0.00 2.57
6306 6621 6.570764 CGGGTCATCTAGTTCTAAGAATAGGC 60.571 46.154 0.00 0.00 0.00 3.93
6307 6622 6.267928 GGGTCATCTAGTTCTAAGAATAGGCA 59.732 42.308 0.00 0.00 0.00 4.75
6308 6623 7.202011 GGGTCATCTAGTTCTAAGAATAGGCAA 60.202 40.741 0.00 0.00 0.00 4.52
6309 6624 8.204836 GGTCATCTAGTTCTAAGAATAGGCAAA 58.795 37.037 0.00 0.00 0.00 3.68
6310 6625 9.255304 GTCATCTAGTTCTAAGAATAGGCAAAG 57.745 37.037 0.00 0.00 0.00 2.77
6311 6626 9.201989 TCATCTAGTTCTAAGAATAGGCAAAGA 57.798 33.333 0.00 0.00 0.00 2.52
6312 6627 9.823647 CATCTAGTTCTAAGAATAGGCAAAGAA 57.176 33.333 0.00 0.00 0.00 2.52
6314 6629 9.036980 TCTAGTTCTAAGAATAGGCAAAGAAGT 57.963 33.333 0.00 0.00 32.80 3.01
6315 6630 7.913674 AGTTCTAAGAATAGGCAAAGAAGTG 57.086 36.000 0.00 0.00 0.00 3.16
6316 6631 6.881602 AGTTCTAAGAATAGGCAAAGAAGTGG 59.118 38.462 0.00 0.00 0.00 4.00
6317 6632 6.374417 TCTAAGAATAGGCAAAGAAGTGGT 57.626 37.500 0.00 0.00 0.00 4.16
6318 6633 6.173339 TCTAAGAATAGGCAAAGAAGTGGTG 58.827 40.000 0.00 0.00 0.00 4.17
6319 6634 3.084786 AGAATAGGCAAAGAAGTGGTGC 58.915 45.455 0.00 0.00 37.55 5.01
6323 6638 2.719376 GCAAAGAAGTGGTGCCAGA 58.281 52.632 0.00 0.00 31.94 3.86
6324 6639 1.032014 GCAAAGAAGTGGTGCCAGAA 58.968 50.000 0.00 0.00 31.94 3.02
6325 6640 1.000938 GCAAAGAAGTGGTGCCAGAAG 60.001 52.381 0.00 0.00 31.94 2.85
6326 6641 2.301346 CAAAGAAGTGGTGCCAGAAGT 58.699 47.619 0.00 0.00 0.00 3.01
6327 6642 2.262423 AAGAAGTGGTGCCAGAAGTC 57.738 50.000 0.00 0.00 0.00 3.01
6328 6643 0.398318 AGAAGTGGTGCCAGAAGTCC 59.602 55.000 0.00 0.00 0.00 3.85
6329 6644 0.108585 GAAGTGGTGCCAGAAGTCCA 59.891 55.000 0.00 0.00 0.00 4.02
6330 6645 4.065110 GTGGTGCCAGAAGTCCAC 57.935 61.111 0.00 0.00 42.40 4.02
6331 6646 1.961277 GTGGTGCCAGAAGTCCACG 60.961 63.158 0.00 0.00 40.36 4.94
6332 6647 2.137528 TGGTGCCAGAAGTCCACGA 61.138 57.895 0.00 0.00 0.00 4.35
6333 6648 1.668151 GGTGCCAGAAGTCCACGAC 60.668 63.158 0.00 0.00 0.00 4.34
6334 6649 1.069090 GTGCCAGAAGTCCACGACA 59.931 57.895 0.00 0.00 34.60 4.35
6335 6650 1.069090 TGCCAGAAGTCCACGACAC 59.931 57.895 0.00 0.00 34.60 3.67
6336 6651 1.069090 GCCAGAAGTCCACGACACA 59.931 57.895 0.00 0.00 34.60 3.72
6337 6652 0.531974 GCCAGAAGTCCACGACACAA 60.532 55.000 0.00 0.00 34.60 3.33
6338 6653 1.502231 CCAGAAGTCCACGACACAAG 58.498 55.000 0.00 0.00 34.60 3.16
6339 6654 1.502231 CAGAAGTCCACGACACAAGG 58.498 55.000 0.00 0.00 34.60 3.61
6340 6655 0.249911 AGAAGTCCACGACACAAGGC 60.250 55.000 0.00 0.00 34.60 4.35
6341 6656 1.557443 GAAGTCCACGACACAAGGCG 61.557 60.000 0.00 0.00 34.60 5.52
6342 6657 2.279918 GTCCACGACACAAGGCGT 60.280 61.111 0.00 0.00 42.11 5.68
6352 6667 2.858622 ACAAGGCGTGATGATGTGG 58.141 52.632 7.60 0.00 0.00 4.17
6353 6668 0.036732 ACAAGGCGTGATGATGTGGT 59.963 50.000 7.60 0.00 0.00 4.16
6354 6669 0.729116 CAAGGCGTGATGATGTGGTC 59.271 55.000 0.00 0.00 0.00 4.02
6355 6670 0.324614 AAGGCGTGATGATGTGGTCA 59.675 50.000 0.00 0.00 42.06 4.02
6365 6680 2.910199 TGATGTGGTCATGCTAGAAGC 58.090 47.619 0.00 0.00 42.82 3.86
6378 6693 4.994220 GCTAGAAGCAGATGATGACATG 57.006 45.455 0.00 0.00 41.89 3.21
6379 6694 3.747010 GCTAGAAGCAGATGATGACATGG 59.253 47.826 0.00 0.00 41.89 3.66
6380 6695 2.573369 AGAAGCAGATGATGACATGGC 58.427 47.619 0.00 0.00 36.82 4.40
6381 6696 1.263484 GAAGCAGATGATGACATGGCG 59.737 52.381 0.00 0.00 38.00 5.69
6382 6697 1.164662 AGCAGATGATGACATGGCGC 61.165 55.000 0.00 0.00 38.00 6.53
6383 6698 1.947013 CAGATGATGACATGGCGCC 59.053 57.895 22.73 22.73 36.82 6.53
6384 6699 0.816421 CAGATGATGACATGGCGCCA 60.816 55.000 34.80 34.80 36.82 5.69
6385 6700 0.534427 AGATGATGACATGGCGCCAG 60.534 55.000 35.36 26.66 36.82 4.85
6386 6701 0.533531 GATGATGACATGGCGCCAGA 60.534 55.000 35.36 18.42 36.82 3.86
6387 6702 0.107066 ATGATGACATGGCGCCAGAA 60.107 50.000 35.36 19.63 35.21 3.02
6388 6703 1.026182 TGATGACATGGCGCCAGAAC 61.026 55.000 35.36 25.52 0.00 3.01
6389 6704 0.745845 GATGACATGGCGCCAGAACT 60.746 55.000 35.36 15.81 0.00 3.01
6390 6705 0.745845 ATGACATGGCGCCAGAACTC 60.746 55.000 35.36 23.61 0.00 3.01
6391 6706 2.045926 ACATGGCGCCAGAACTCC 60.046 61.111 35.36 1.50 0.00 3.85
6392 6707 2.046023 CATGGCGCCAGAACTCCA 60.046 61.111 35.36 8.54 0.00 3.86
6393 6708 2.045926 ATGGCGCCAGAACTCCAC 60.046 61.111 35.36 0.00 0.00 4.02
6394 6709 2.596851 ATGGCGCCAGAACTCCACT 61.597 57.895 35.36 11.90 0.00 4.00
6395 6710 1.264749 ATGGCGCCAGAACTCCACTA 61.265 55.000 35.36 6.16 0.00 2.74
6396 6711 1.448013 GGCGCCAGAACTCCACTAC 60.448 63.158 24.80 0.00 0.00 2.73
6397 6712 1.292223 GCGCCAGAACTCCACTACA 59.708 57.895 0.00 0.00 0.00 2.74
6398 6713 1.014564 GCGCCAGAACTCCACTACAC 61.015 60.000 0.00 0.00 0.00 2.90
6399 6714 0.317160 CGCCAGAACTCCACTACACA 59.683 55.000 0.00 0.00 0.00 3.72
6400 6715 1.270094 CGCCAGAACTCCACTACACAA 60.270 52.381 0.00 0.00 0.00 3.33
6401 6716 2.417719 GCCAGAACTCCACTACACAAG 58.582 52.381 0.00 0.00 0.00 3.16
6402 6717 2.872038 GCCAGAACTCCACTACACAAGG 60.872 54.545 0.00 0.00 0.00 3.61
6403 6718 2.417719 CAGAACTCCACTACACAAGGC 58.582 52.381 0.00 0.00 0.00 4.35
6404 6719 1.000955 AGAACTCCACTACACAAGGCG 59.999 52.381 0.00 0.00 0.00 5.52
6405 6720 0.034896 AACTCCACTACACAAGGCGG 59.965 55.000 0.00 0.00 0.00 6.13
6406 6721 0.830444 ACTCCACTACACAAGGCGGA 60.830 55.000 0.00 0.00 31.87 5.54
6407 6722 0.389948 CTCCACTACACAAGGCGGAC 60.390 60.000 0.00 0.00 30.14 4.79
6408 6723 1.375523 CCACTACACAAGGCGGACC 60.376 63.158 0.00 0.00 0.00 4.46
6409 6724 1.736645 CACTACACAAGGCGGACCG 60.737 63.158 10.29 10.29 42.76 4.79
6410 6725 1.904865 ACTACACAAGGCGGACCGA 60.905 57.895 20.50 0.00 42.76 4.69
6411 6726 1.445582 CTACACAAGGCGGACCGAC 60.446 63.158 20.50 17.10 42.76 4.79
6412 6727 3.271706 TACACAAGGCGGACCGACG 62.272 63.158 20.50 5.41 41.28 5.12
6413 6728 4.657824 CACAAGGCGGACCGACGT 62.658 66.667 20.50 11.22 41.28 4.34
6431 6746 2.538790 TGGTTCTGCCAGAAGACCA 58.461 52.632 13.14 13.14 43.61 4.02
6432 6747 0.843309 TGGTTCTGCCAGAAGACCAA 59.157 50.000 14.49 0.94 43.61 3.67
6433 6748 1.202806 TGGTTCTGCCAGAAGACCAAG 60.203 52.381 14.49 0.00 43.61 3.61
6434 6749 1.072331 GGTTCTGCCAGAAGACCAAGA 59.928 52.381 7.55 0.00 34.42 3.02
6435 6750 2.147150 GTTCTGCCAGAAGACCAAGAC 58.853 52.381 7.55 0.00 34.42 3.01
6436 6751 0.318441 TCTGCCAGAAGACCAAGACG 59.682 55.000 0.00 0.00 0.00 4.18
6437 6752 1.294659 CTGCCAGAAGACCAAGACGC 61.295 60.000 0.00 0.00 0.00 5.19
6438 6753 2.383527 GCCAGAAGACCAAGACGCG 61.384 63.158 3.53 3.53 0.00 6.01
6439 6754 2.383527 CCAGAAGACCAAGACGCGC 61.384 63.158 5.73 0.00 0.00 6.86
6440 6755 1.664649 CAGAAGACCAAGACGCGCA 60.665 57.895 5.73 0.00 0.00 6.09
6441 6756 1.373497 AGAAGACCAAGACGCGCAG 60.373 57.895 5.73 2.42 0.00 5.18
6459 6774 3.417601 CGAGGTATGTCGCTCGGA 58.582 61.111 0.00 0.00 35.13 4.55
6460 6775 1.280142 CGAGGTATGTCGCTCGGAG 59.720 63.158 0.00 0.00 35.13 4.63
6461 6776 1.008309 GAGGTATGTCGCTCGGAGC 60.008 63.158 19.92 19.92 38.02 4.70
6462 6777 1.725557 GAGGTATGTCGCTCGGAGCA 61.726 60.000 27.83 13.43 42.58 4.26
6463 6778 1.141019 GGTATGTCGCTCGGAGCAA 59.859 57.895 27.83 8.92 42.58 3.91
6464 6779 0.459585 GGTATGTCGCTCGGAGCAAA 60.460 55.000 27.83 13.71 42.58 3.68
6465 6780 0.645868 GTATGTCGCTCGGAGCAAAC 59.354 55.000 27.83 23.45 42.58 2.93
6466 6781 0.800683 TATGTCGCTCGGAGCAAACG 60.801 55.000 27.83 12.84 42.58 3.60
6467 6782 2.430244 GTCGCTCGGAGCAAACGA 60.430 61.111 27.83 14.90 42.58 3.85
6468 6783 2.430244 TCGCTCGGAGCAAACGAC 60.430 61.111 27.83 0.00 42.58 4.34
6469 6784 3.827784 CGCTCGGAGCAAACGACG 61.828 66.667 27.83 7.54 42.58 5.12
6470 6785 3.479269 GCTCGGAGCAAACGACGG 61.479 66.667 24.42 0.00 41.89 4.79
6471 6786 2.049433 CTCGGAGCAAACGACGGT 60.049 61.111 0.00 0.00 36.25 4.83
6472 6787 2.355363 TCGGAGCAAACGACGGTG 60.355 61.111 0.00 0.00 35.12 4.94
6473 6788 3.411351 CGGAGCAAACGACGGTGG 61.411 66.667 0.00 0.00 0.00 4.61
6474 6789 3.723348 GGAGCAAACGACGGTGGC 61.723 66.667 3.36 3.36 0.00 5.01
6475 6790 2.970324 GAGCAAACGACGGTGGCA 60.970 61.111 16.00 0.00 31.65 4.92
6476 6791 2.281484 AGCAAACGACGGTGGCAT 60.281 55.556 16.00 0.00 31.65 4.40
6477 6792 1.004320 AGCAAACGACGGTGGCATA 60.004 52.632 16.00 0.00 31.65 3.14
6478 6793 0.392461 AGCAAACGACGGTGGCATAT 60.392 50.000 16.00 0.00 31.65 1.78
6479 6794 1.134640 AGCAAACGACGGTGGCATATA 60.135 47.619 16.00 0.00 31.65 0.86
6480 6795 1.004292 GCAAACGACGGTGGCATATAC 60.004 52.381 7.57 0.00 0.00 1.47
6481 6796 2.272678 CAAACGACGGTGGCATATACA 58.727 47.619 0.00 0.00 0.00 2.29
6482 6797 1.930567 AACGACGGTGGCATATACAC 58.069 50.000 0.00 2.01 38.10 2.90
6483 6798 0.818938 ACGACGGTGGCATATACACA 59.181 50.000 0.00 0.00 40.54 3.72
6484 6799 1.205179 ACGACGGTGGCATATACACAA 59.795 47.619 0.00 0.00 40.54 3.33
6485 6800 2.159014 ACGACGGTGGCATATACACAAT 60.159 45.455 0.00 0.23 40.54 2.71
6486 6801 2.220824 CGACGGTGGCATATACACAATG 59.779 50.000 10.73 4.19 40.54 2.82
6512 6827 1.221414 GGAATTTCTCCGCTCGATGG 58.779 55.000 0.00 0.00 33.37 3.51
6513 6828 0.583917 GAATTTCTCCGCTCGATGGC 59.416 55.000 0.00 0.00 0.00 4.40
6514 6829 0.179000 AATTTCTCCGCTCGATGGCT 59.821 50.000 0.00 0.00 0.00 4.75
6515 6830 0.249657 ATTTCTCCGCTCGATGGCTC 60.250 55.000 0.00 0.00 0.00 4.70
6516 6831 1.604147 TTTCTCCGCTCGATGGCTCA 61.604 55.000 0.00 0.00 0.00 4.26
6517 6832 2.009424 TTCTCCGCTCGATGGCTCAG 62.009 60.000 0.00 0.00 0.00 3.35
6518 6833 4.212913 TCCGCTCGATGGCTCAGC 62.213 66.667 0.00 0.00 0.00 4.26
6540 6855 3.723348 GCGTCCGGCAACCAAGTC 61.723 66.667 0.00 0.00 42.87 3.01
6541 6856 3.411351 CGTCCGGCAACCAAGTCG 61.411 66.667 0.00 0.00 36.15 4.18
6547 6862 4.389576 GCAACCAAGTCGGCGCTG 62.390 66.667 10.86 10.86 39.03 5.18
6548 6863 4.389576 CAACCAAGTCGGCGCTGC 62.390 66.667 12.58 6.97 39.03 5.25
6549 6864 4.927782 AACCAAGTCGGCGCTGCA 62.928 61.111 12.58 0.00 39.03 4.41
6550 6865 4.704833 ACCAAGTCGGCGCTGCAT 62.705 61.111 12.58 0.00 39.03 3.96
6551 6866 4.170062 CCAAGTCGGCGCTGCATG 62.170 66.667 12.58 9.92 0.00 4.06
6552 6867 4.824166 CAAGTCGGCGCTGCATGC 62.824 66.667 12.58 11.82 38.57 4.06
6565 6880 3.826754 CATGCAGCAGGCCAGCAG 61.827 66.667 23.38 15.93 42.14 4.24
6569 6884 4.052229 CAGCAGGCCAGCAGCAAC 62.052 66.667 23.38 0.00 46.50 4.17
6573 6888 4.269523 AGGCCAGCAGCAACCGAA 62.270 61.111 5.01 0.00 46.50 4.30
6574 6889 3.741476 GGCCAGCAGCAACCGAAG 61.741 66.667 0.00 0.00 46.50 3.79
6593 6908 2.856032 CAGCAGCTGCACGTACAC 59.144 61.111 38.24 8.57 45.16 2.90
6594 6909 2.357517 AGCAGCTGCACGTACACC 60.358 61.111 38.24 7.79 45.16 4.16
6595 6910 3.777925 GCAGCTGCACGTACACCG 61.778 66.667 33.36 0.00 41.59 4.94
6596 6911 3.777925 CAGCTGCACGTACACCGC 61.778 66.667 0.00 0.00 41.42 5.68
6614 6929 4.340019 CGGCGTTGGCATGCACAA 62.340 61.111 21.36 17.64 42.47 3.33
6615 6930 2.262292 GGCGTTGGCATGCACAAT 59.738 55.556 21.36 0.00 42.47 2.71
6616 6931 1.806758 GGCGTTGGCATGCACAATC 60.807 57.895 21.36 15.06 42.47 2.67
6617 6932 1.806758 GCGTTGGCATGCACAATCC 60.807 57.895 21.36 11.66 39.62 3.01
6618 6933 1.585517 CGTTGGCATGCACAATCCA 59.414 52.632 21.36 3.75 0.00 3.41
6619 6934 0.457166 CGTTGGCATGCACAATCCAG 60.457 55.000 21.36 10.08 0.00 3.86
6620 6935 0.604578 GTTGGCATGCACAATCCAGT 59.395 50.000 21.36 0.00 0.00 4.00
6621 6936 0.604073 TTGGCATGCACAATCCAGTG 59.396 50.000 21.36 0.00 42.37 3.66
6622 6937 1.252215 TGGCATGCACAATCCAGTGG 61.252 55.000 21.36 1.40 39.87 4.00
6623 6938 0.966875 GGCATGCACAATCCAGTGGA 60.967 55.000 21.36 15.88 44.02 4.02
6624 6939 0.171903 GCATGCACAATCCAGTGGAC 59.828 55.000 15.86 1.31 42.69 4.02
6625 6940 1.536940 CATGCACAATCCAGTGGACA 58.463 50.000 15.86 8.04 42.69 4.02
6626 6941 1.887854 CATGCACAATCCAGTGGACAA 59.112 47.619 15.86 0.00 42.69 3.18
6627 6942 1.608055 TGCACAATCCAGTGGACAAG 58.392 50.000 15.86 9.87 39.87 3.16
6628 6943 0.242017 GCACAATCCAGTGGACAAGC 59.758 55.000 15.86 12.68 39.87 4.01
6629 6944 0.883833 CACAATCCAGTGGACAAGCC 59.116 55.000 15.86 0.00 32.98 4.35
6630 6945 0.606401 ACAATCCAGTGGACAAGCCG 60.606 55.000 15.86 1.95 40.66 5.52
6631 6946 1.002134 AATCCAGTGGACAAGCCGG 60.002 57.895 15.86 0.00 40.66 6.13
6632 6947 1.488705 AATCCAGTGGACAAGCCGGA 61.489 55.000 15.86 0.00 40.66 5.14
6633 6948 1.274703 ATCCAGTGGACAAGCCGGAT 61.275 55.000 15.86 0.00 40.66 4.18
6634 6949 1.746615 CCAGTGGACAAGCCGGATG 60.747 63.158 5.05 5.76 40.66 3.51
6635 6950 1.746615 CAGTGGACAAGCCGGATGG 60.747 63.158 5.05 0.00 40.66 3.51
6636 6951 2.224159 AGTGGACAAGCCGGATGGT 61.224 57.895 5.05 0.03 40.66 3.55
6637 6952 2.040544 GTGGACAAGCCGGATGGTG 61.041 63.158 3.29 0.00 40.66 4.17
6638 6953 2.438434 GGACAAGCCGGATGGTGG 60.438 66.667 3.29 0.00 37.67 4.61
6639 6954 2.351276 GACAAGCCGGATGGTGGT 59.649 61.111 3.29 0.00 37.67 4.16
6640 6955 2.034066 ACAAGCCGGATGGTGGTG 59.966 61.111 5.05 0.00 37.67 4.17
6641 6956 2.751436 CAAGCCGGATGGTGGTGG 60.751 66.667 5.05 0.00 37.67 4.61
6653 6968 3.574952 TGGTGGCCACTACAAGCT 58.425 55.556 33.91 0.00 0.00 3.74
6654 6969 1.073025 TGGTGGCCACTACAAGCTG 59.927 57.895 33.91 0.00 0.00 4.24
6655 6970 1.073199 GGTGGCCACTACAAGCTGT 59.927 57.895 33.91 0.00 0.00 4.40
6656 6971 0.955919 GGTGGCCACTACAAGCTGTC 60.956 60.000 33.91 10.67 0.00 3.51
6657 6972 0.035458 GTGGCCACTACAAGCTGTCT 59.965 55.000 29.12 0.00 0.00 3.41
6658 6973 0.035317 TGGCCACTACAAGCTGTCTG 59.965 55.000 0.00 0.00 0.00 3.51
6659 6974 1.301677 GGCCACTACAAGCTGTCTGC 61.302 60.000 0.00 0.00 43.29 4.26
6660 6975 0.603707 GCCACTACAAGCTGTCTGCA 60.604 55.000 4.39 0.00 45.94 4.41
6661 6976 1.882912 CCACTACAAGCTGTCTGCAA 58.117 50.000 4.39 0.00 45.94 4.08
6662 6977 1.532868 CCACTACAAGCTGTCTGCAAC 59.467 52.381 4.39 0.00 45.94 4.17
6663 6978 2.212652 CACTACAAGCTGTCTGCAACA 58.787 47.619 4.39 0.00 45.94 3.33
6670 6985 4.462394 TGTCTGCAACAGCTCCAC 57.538 55.556 0.00 0.00 32.81 4.02
6671 6986 1.227943 TGTCTGCAACAGCTCCACC 60.228 57.895 0.00 0.00 32.81 4.61
6672 6987 1.227943 GTCTGCAACAGCTCCACCA 60.228 57.895 0.00 0.00 0.00 4.17
6673 6988 0.819259 GTCTGCAACAGCTCCACCAA 60.819 55.000 0.00 0.00 0.00 3.67
6674 6989 0.819259 TCTGCAACAGCTCCACCAAC 60.819 55.000 0.00 0.00 0.00 3.77
6675 6990 2.121564 CTGCAACAGCTCCACCAACG 62.122 60.000 0.00 0.00 0.00 4.10
6676 6991 1.891919 GCAACAGCTCCACCAACGA 60.892 57.895 0.00 0.00 0.00 3.85
6677 6992 1.845809 GCAACAGCTCCACCAACGAG 61.846 60.000 0.00 0.00 0.00 4.18
6682 6997 4.268687 CTCCACCAACGAGCTCAC 57.731 61.111 15.40 0.00 0.00 3.51
6683 6998 1.668294 CTCCACCAACGAGCTCACT 59.332 57.895 15.40 0.00 0.00 3.41
6684 6999 0.888619 CTCCACCAACGAGCTCACTA 59.111 55.000 15.40 0.00 0.00 2.74
6685 7000 0.601558 TCCACCAACGAGCTCACTAC 59.398 55.000 15.40 0.00 0.00 2.73
6686 7001 0.389948 CCACCAACGAGCTCACTACC 60.390 60.000 15.40 0.00 0.00 3.18
6687 7002 0.317160 CACCAACGAGCTCACTACCA 59.683 55.000 15.40 0.00 0.00 3.25
6688 7003 0.317479 ACCAACGAGCTCACTACCAC 59.683 55.000 15.40 0.00 0.00 4.16
6689 7004 0.317160 CCAACGAGCTCACTACCACA 59.683 55.000 15.40 0.00 0.00 4.17
6690 7005 1.066858 CCAACGAGCTCACTACCACAT 60.067 52.381 15.40 0.00 0.00 3.21
6691 7006 1.995484 CAACGAGCTCACTACCACATG 59.005 52.381 15.40 0.00 0.00 3.21
6692 7007 0.532573 ACGAGCTCACTACCACATGG 59.467 55.000 15.40 0.00 42.17 3.66
6693 7008 0.817654 CGAGCTCACTACCACATGGA 59.182 55.000 15.40 0.00 38.94 3.41
6694 7009 1.202348 CGAGCTCACTACCACATGGAG 60.202 57.143 15.40 0.60 38.94 3.86
6695 7010 1.827969 GAGCTCACTACCACATGGAGT 59.172 52.381 9.40 1.24 38.94 3.85
6701 7016 2.497675 CACTACCACATGGAGTGCTAGT 59.502 50.000 4.53 0.00 45.88 2.57
6702 7017 3.699538 CACTACCACATGGAGTGCTAGTA 59.300 47.826 4.53 0.00 44.12 1.82
6703 7018 4.159693 CACTACCACATGGAGTGCTAGTAA 59.840 45.833 4.53 0.00 44.12 2.24
6704 7019 4.962995 ACTACCACATGGAGTGCTAGTAAT 59.037 41.667 4.53 0.00 44.11 1.89
6705 7020 5.163405 ACTACCACATGGAGTGCTAGTAATG 60.163 44.000 4.53 0.00 44.11 1.90
6706 7021 8.090687 ACTACCACATGGAGTGCTAGTAATGG 62.091 46.154 4.53 0.00 44.11 3.16
6707 7022 4.406648 CACATGGAGTGCTAGTAATGGA 57.593 45.455 0.00 0.00 42.15 3.41
6708 7023 4.965814 CACATGGAGTGCTAGTAATGGAT 58.034 43.478 0.00 0.00 42.15 3.41
6709 7024 4.753610 CACATGGAGTGCTAGTAATGGATG 59.246 45.833 0.00 0.00 42.15 3.51
6710 7025 4.202398 ACATGGAGTGCTAGTAATGGATGG 60.202 45.833 0.00 0.00 0.00 3.51
6711 7026 2.705658 TGGAGTGCTAGTAATGGATGGG 59.294 50.000 0.00 0.00 0.00 4.00
6712 7027 2.551071 GGAGTGCTAGTAATGGATGGGC 60.551 54.545 0.00 0.00 0.00 5.36
6713 7028 2.370189 GAGTGCTAGTAATGGATGGGCT 59.630 50.000 0.00 0.00 0.00 5.19
6714 7029 3.578716 GAGTGCTAGTAATGGATGGGCTA 59.421 47.826 0.00 0.00 0.00 3.93
6715 7030 3.325135 AGTGCTAGTAATGGATGGGCTAC 59.675 47.826 0.00 0.00 0.00 3.58
6716 7031 3.071023 GTGCTAGTAATGGATGGGCTACA 59.929 47.826 0.00 0.00 0.00 2.74
6717 7032 3.714280 TGCTAGTAATGGATGGGCTACAA 59.286 43.478 0.00 0.00 0.00 2.41
6718 7033 4.350816 TGCTAGTAATGGATGGGCTACAAT 59.649 41.667 0.00 0.00 0.00 2.71
6719 7034 5.546110 TGCTAGTAATGGATGGGCTACAATA 59.454 40.000 0.00 0.00 0.00 1.90
6720 7035 6.215431 TGCTAGTAATGGATGGGCTACAATAT 59.785 38.462 0.00 0.00 0.00 1.28
6721 7036 6.540189 GCTAGTAATGGATGGGCTACAATATG 59.460 42.308 0.00 0.00 0.00 1.78
6722 7037 5.256474 AGTAATGGATGGGCTACAATATGC 58.744 41.667 0.00 0.00 0.00 3.14
6723 7038 2.183478 TGGATGGGCTACAATATGCG 57.817 50.000 0.00 0.00 0.00 4.73
6724 7039 0.804989 GGATGGGCTACAATATGCGC 59.195 55.000 0.00 0.00 41.57 6.09
6726 7041 3.485764 TGGGCTACAATATGCGCAA 57.514 47.368 17.11 4.13 46.37 4.85
6727 7042 1.021202 TGGGCTACAATATGCGCAAC 58.979 50.000 17.11 0.00 46.37 4.17
6728 7043 0.041312 GGGCTACAATATGCGCAACG 60.041 55.000 17.11 5.59 41.00 4.10
6729 7044 0.655733 GGCTACAATATGCGCAACGT 59.344 50.000 17.11 11.91 0.00 3.99
6730 7045 1.332904 GGCTACAATATGCGCAACGTC 60.333 52.381 17.11 0.00 0.00 4.34
6731 7046 1.593006 GCTACAATATGCGCAACGTCT 59.407 47.619 17.11 0.00 0.00 4.18
6732 7047 2.792674 GCTACAATATGCGCAACGTCTA 59.207 45.455 17.11 1.03 0.00 2.59
6733 7048 3.121328 GCTACAATATGCGCAACGTCTAG 60.121 47.826 17.11 11.96 0.00 2.43
6734 7049 2.888594 ACAATATGCGCAACGTCTAGT 58.111 42.857 17.11 4.12 0.00 2.57
6735 7050 4.036567 ACAATATGCGCAACGTCTAGTA 57.963 40.909 17.11 0.00 0.00 1.82
6736 7051 4.426416 ACAATATGCGCAACGTCTAGTAA 58.574 39.130 17.11 0.00 0.00 2.24
6737 7052 4.865925 ACAATATGCGCAACGTCTAGTAAA 59.134 37.500 17.11 0.00 0.00 2.01
6738 7053 5.349270 ACAATATGCGCAACGTCTAGTAAAA 59.651 36.000 17.11 0.00 0.00 1.52
6739 7054 3.991605 ATGCGCAACGTCTAGTAAAAG 57.008 42.857 17.11 0.00 0.00 2.27
6740 7055 2.063266 TGCGCAACGTCTAGTAAAAGG 58.937 47.619 8.16 0.00 0.00 3.11
6741 7056 2.288334 TGCGCAACGTCTAGTAAAAGGA 60.288 45.455 8.16 0.00 0.00 3.36
6742 7057 2.344741 GCGCAACGTCTAGTAAAAGGAG 59.655 50.000 0.30 0.00 0.00 3.69
6743 7058 3.829948 CGCAACGTCTAGTAAAAGGAGA 58.170 45.455 0.00 0.00 0.00 3.71
6744 7059 3.607209 CGCAACGTCTAGTAAAAGGAGAC 59.393 47.826 0.00 0.00 36.95 3.36
6749 7064 3.509740 GTCTAGTAAAAGGAGACGTGCC 58.490 50.000 0.00 0.00 31.01 5.01
6750 7065 3.057033 GTCTAGTAAAAGGAGACGTGCCA 60.057 47.826 0.00 0.00 31.01 4.92
6751 7066 2.165319 AGTAAAAGGAGACGTGCCAC 57.835 50.000 0.00 0.00 0.00 5.01
6752 7067 1.414919 AGTAAAAGGAGACGTGCCACA 59.585 47.619 0.00 0.00 0.00 4.17
6753 7068 2.158871 AGTAAAAGGAGACGTGCCACAA 60.159 45.455 0.00 0.00 0.00 3.33
6754 7069 1.308998 AAAAGGAGACGTGCCACAAG 58.691 50.000 0.00 0.00 0.00 3.16
6755 7070 0.180406 AAAGGAGACGTGCCACAAGT 59.820 50.000 0.00 0.00 0.00 3.16
6756 7071 0.180406 AAGGAGACGTGCCACAAGTT 59.820 50.000 0.00 0.00 0.00 2.66
6757 7072 1.045407 AGGAGACGTGCCACAAGTTA 58.955 50.000 0.00 0.00 0.00 2.24
6758 7073 1.000955 AGGAGACGTGCCACAAGTTAG 59.999 52.381 0.00 0.00 0.00 2.34
6759 7074 0.790814 GAGACGTGCCACAAGTTAGC 59.209 55.000 0.00 0.00 0.00 3.09
6760 7075 0.393077 AGACGTGCCACAAGTTAGCT 59.607 50.000 0.00 0.00 0.00 3.32
6761 7076 0.512952 GACGTGCCACAAGTTAGCTG 59.487 55.000 0.00 0.00 0.00 4.24
6762 7077 1.207593 CGTGCCACAAGTTAGCTGC 59.792 57.895 0.00 0.00 0.00 5.25
6763 7078 1.207593 GTGCCACAAGTTAGCTGCG 59.792 57.895 0.00 0.00 0.00 5.18
6764 7079 1.965930 TGCCACAAGTTAGCTGCGG 60.966 57.895 0.00 0.00 0.00 5.69
6765 7080 1.966451 GCCACAAGTTAGCTGCGGT 60.966 57.895 0.00 0.00 0.00 5.68
6766 7081 1.912371 GCCACAAGTTAGCTGCGGTC 61.912 60.000 0.00 0.00 0.00 4.79
6767 7082 1.298859 CCACAAGTTAGCTGCGGTCC 61.299 60.000 0.00 0.00 0.00 4.46
6768 7083 0.602638 CACAAGTTAGCTGCGGTCCA 60.603 55.000 0.00 0.00 0.00 4.02
6769 7084 0.324943 ACAAGTTAGCTGCGGTCCAT 59.675 50.000 0.00 0.00 0.00 3.41
6770 7085 1.009829 CAAGTTAGCTGCGGTCCATC 58.990 55.000 0.00 0.00 0.00 3.51
6771 7086 0.905357 AAGTTAGCTGCGGTCCATCT 59.095 50.000 0.00 0.00 0.00 2.90
6772 7087 1.776662 AGTTAGCTGCGGTCCATCTA 58.223 50.000 0.00 0.00 0.00 1.98
6773 7088 1.683917 AGTTAGCTGCGGTCCATCTAG 59.316 52.381 0.00 0.00 0.00 2.43
6774 7089 1.409427 GTTAGCTGCGGTCCATCTAGT 59.591 52.381 0.00 0.00 0.00 2.57
6775 7090 1.032794 TAGCTGCGGTCCATCTAGTG 58.967 55.000 0.00 0.00 0.00 2.74
6776 7091 0.972983 AGCTGCGGTCCATCTAGTGT 60.973 55.000 0.00 0.00 0.00 3.55
6777 7092 0.108138 GCTGCGGTCCATCTAGTGTT 60.108 55.000 0.00 0.00 0.00 3.32
6778 7093 1.645034 CTGCGGTCCATCTAGTGTTG 58.355 55.000 0.00 0.00 0.00 3.33
6779 7094 0.391130 TGCGGTCCATCTAGTGTTGC 60.391 55.000 0.00 0.00 0.00 4.17
6780 7095 0.108138 GCGGTCCATCTAGTGTTGCT 60.108 55.000 0.00 0.00 0.00 3.91
6781 7096 1.645034 CGGTCCATCTAGTGTTGCTG 58.355 55.000 0.00 0.00 0.00 4.41
6782 7097 1.740380 CGGTCCATCTAGTGTTGCTGG 60.740 57.143 0.00 0.00 0.00 4.85
6783 7098 1.373570 GTCCATCTAGTGTTGCTGGC 58.626 55.000 0.00 0.00 0.00 4.85
6784 7099 1.065854 GTCCATCTAGTGTTGCTGGCT 60.066 52.381 0.00 0.00 0.00 4.75
6785 7100 1.630369 TCCATCTAGTGTTGCTGGCTT 59.370 47.619 0.00 0.00 0.00 4.35
6786 7101 2.012673 CCATCTAGTGTTGCTGGCTTC 58.987 52.381 0.00 0.00 0.00 3.86
6787 7102 2.616256 CCATCTAGTGTTGCTGGCTTCA 60.616 50.000 0.00 0.00 0.00 3.02
6788 7103 2.169832 TCTAGTGTTGCTGGCTTCAC 57.830 50.000 10.59 10.59 0.00 3.18
6789 7104 1.694150 TCTAGTGTTGCTGGCTTCACT 59.306 47.619 19.35 19.35 42.56 3.41
6790 7105 2.897326 TCTAGTGTTGCTGGCTTCACTA 59.103 45.455 19.46 19.46 40.77 2.74
6791 7106 2.175878 AGTGTTGCTGGCTTCACTAG 57.824 50.000 16.16 0.00 39.01 2.57
6800 7115 2.116383 GCTTCACTAGCGGGCTAGA 58.884 57.895 29.03 9.66 46.56 2.43
6801 7116 0.460311 GCTTCACTAGCGGGCTAGAA 59.540 55.000 29.03 15.69 46.56 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
239 242 7.330262 TCTTAGATCTGCACACATATGTTCAA 58.670 34.615 5.37 0.00 36.72 2.69
1471 1501 3.317993 GGACACAACCAACAGTAGCAAAT 59.682 43.478 0.00 0.00 0.00 2.32
3753 4000 1.828595 TCTAGGTAATCCACTGCGCAA 59.171 47.619 13.05 0.00 35.89 4.85
3936 4202 5.481824 TGAGAGGCATATGAATTATCTCGGT 59.518 40.000 6.97 0.00 35.56 4.69
4207 4484 7.512130 TCATTAGCTCCATCACATCACTATTT 58.488 34.615 0.00 0.00 0.00 1.40
4570 4847 9.793252 CAAATACTGAAGCACATATTTTTAGCT 57.207 29.630 0.00 0.00 37.08 3.32
4662 4939 7.042791 GGTTATTGCATGGTATGGAAAATTTCG 60.043 37.037 0.00 0.00 43.81 3.46
6294 6609 6.173339 CACCACTTCTTTGCCTATTCTTAGA 58.827 40.000 0.00 0.00 0.00 2.10
6295 6610 5.163713 GCACCACTTCTTTGCCTATTCTTAG 60.164 44.000 0.00 0.00 0.00 2.18
6296 6611 4.700213 GCACCACTTCTTTGCCTATTCTTA 59.300 41.667 0.00 0.00 0.00 2.10
6297 6612 3.507622 GCACCACTTCTTTGCCTATTCTT 59.492 43.478 0.00 0.00 0.00 2.52
6298 6613 3.084786 GCACCACTTCTTTGCCTATTCT 58.915 45.455 0.00 0.00 0.00 2.40
6299 6614 3.494045 GCACCACTTCTTTGCCTATTC 57.506 47.619 0.00 0.00 0.00 1.75
6305 6620 1.000938 CTTCTGGCACCACTTCTTTGC 60.001 52.381 0.00 0.00 35.40 3.68
6306 6621 2.291741 GACTTCTGGCACCACTTCTTTG 59.708 50.000 0.00 0.00 0.00 2.77
6307 6622 2.576615 GACTTCTGGCACCACTTCTTT 58.423 47.619 0.00 0.00 0.00 2.52
6308 6623 1.202818 GGACTTCTGGCACCACTTCTT 60.203 52.381 0.00 0.00 0.00 2.52
6309 6624 0.398318 GGACTTCTGGCACCACTTCT 59.602 55.000 0.00 0.00 0.00 2.85
6310 6625 0.108585 TGGACTTCTGGCACCACTTC 59.891 55.000 0.00 0.00 0.00 3.01
6311 6626 0.179018 GTGGACTTCTGGCACCACTT 60.179 55.000 14.93 0.00 46.14 3.16
6312 6627 1.451936 GTGGACTTCTGGCACCACT 59.548 57.895 14.93 0.00 46.14 4.00
6313 6628 1.961277 CGTGGACTTCTGGCACCAC 60.961 63.158 12.80 12.80 46.16 4.16
6314 6629 2.137528 TCGTGGACTTCTGGCACCA 61.138 57.895 0.00 0.00 0.00 4.17
6315 6630 1.668151 GTCGTGGACTTCTGGCACC 60.668 63.158 0.00 0.00 0.00 5.01
6316 6631 1.069090 TGTCGTGGACTTCTGGCAC 59.931 57.895 0.00 0.00 33.15 5.01
6317 6632 1.069090 GTGTCGTGGACTTCTGGCA 59.931 57.895 0.00 0.00 33.15 4.92
6318 6633 0.531974 TTGTGTCGTGGACTTCTGGC 60.532 55.000 0.00 0.00 33.15 4.85
6319 6634 1.502231 CTTGTGTCGTGGACTTCTGG 58.498 55.000 0.00 0.00 33.15 3.86
6320 6635 1.502231 CCTTGTGTCGTGGACTTCTG 58.498 55.000 0.00 0.00 33.15 3.02
6321 6636 0.249911 GCCTTGTGTCGTGGACTTCT 60.250 55.000 0.00 0.00 33.15 2.85
6322 6637 1.557443 CGCCTTGTGTCGTGGACTTC 61.557 60.000 0.00 0.00 33.15 3.01
6323 6638 1.594293 CGCCTTGTGTCGTGGACTT 60.594 57.895 0.00 0.00 33.15 3.01
6324 6639 2.029073 CGCCTTGTGTCGTGGACT 59.971 61.111 0.00 0.00 33.15 3.85
6325 6640 2.279918 ACGCCTTGTGTCGTGGAC 60.280 61.111 0.00 0.00 37.55 4.02
6334 6649 0.036732 ACCACATCATCACGCCTTGT 59.963 50.000 0.00 0.00 0.00 3.16
6335 6650 0.729116 GACCACATCATCACGCCTTG 59.271 55.000 0.00 0.00 0.00 3.61
6336 6651 0.324614 TGACCACATCATCACGCCTT 59.675 50.000 0.00 0.00 29.99 4.35
6337 6652 0.543277 ATGACCACATCATCACGCCT 59.457 50.000 0.00 0.00 45.52 5.52
6338 6653 0.659427 CATGACCACATCATCACGCC 59.341 55.000 0.00 0.00 45.52 5.68
6339 6654 0.028505 GCATGACCACATCATCACGC 59.971 55.000 0.00 0.00 45.52 5.34
6340 6655 1.660167 AGCATGACCACATCATCACG 58.340 50.000 0.00 0.00 45.52 4.35
6341 6656 4.063998 TCTAGCATGACCACATCATCAC 57.936 45.455 0.00 0.00 45.52 3.06
6342 6657 4.700700 CTTCTAGCATGACCACATCATCA 58.299 43.478 0.00 0.00 45.52 3.07
6343 6658 3.497640 GCTTCTAGCATGACCACATCATC 59.502 47.826 0.00 0.00 45.52 2.92
6345 6660 2.910199 GCTTCTAGCATGACCACATCA 58.090 47.619 0.00 0.00 41.89 3.07
6353 6668 7.235933 CATGTCATCATCTGCTTCTAGCATGA 61.236 42.308 0.00 4.79 42.35 3.07
6354 6669 5.106908 CATGTCATCATCTGCTTCTAGCATG 60.107 44.000 1.32 0.00 40.47 4.06
6355 6670 4.998033 CATGTCATCATCTGCTTCTAGCAT 59.002 41.667 1.32 0.00 40.47 3.79
6356 6671 4.377897 CATGTCATCATCTGCTTCTAGCA 58.622 43.478 0.98 0.98 39.61 3.49
6357 6672 3.747010 CCATGTCATCATCTGCTTCTAGC 59.253 47.826 0.00 0.00 35.31 3.42
6358 6673 3.747010 GCCATGTCATCATCTGCTTCTAG 59.253 47.826 0.00 0.00 31.15 2.43
6359 6674 3.736720 GCCATGTCATCATCTGCTTCTA 58.263 45.455 0.00 0.00 31.15 2.10
6360 6675 2.573369 GCCATGTCATCATCTGCTTCT 58.427 47.619 0.00 0.00 31.15 2.85
6361 6676 1.263484 CGCCATGTCATCATCTGCTTC 59.737 52.381 0.00 0.00 31.15 3.86
6362 6677 1.306148 CGCCATGTCATCATCTGCTT 58.694 50.000 0.00 0.00 31.15 3.91
6363 6678 1.164662 GCGCCATGTCATCATCTGCT 61.165 55.000 0.00 0.00 31.15 4.24
6364 6679 1.281960 GCGCCATGTCATCATCTGC 59.718 57.895 0.00 0.00 31.15 4.26
6365 6680 0.816421 TGGCGCCATGTCATCATCTG 60.816 55.000 29.03 0.00 31.15 2.90
6366 6681 0.534427 CTGGCGCCATGTCATCATCT 60.534 55.000 32.87 0.00 31.15 2.90
6367 6682 0.533531 TCTGGCGCCATGTCATCATC 60.534 55.000 32.87 0.00 31.15 2.92
6368 6683 0.107066 TTCTGGCGCCATGTCATCAT 60.107 50.000 32.87 0.00 34.21 2.45
6369 6684 1.026182 GTTCTGGCGCCATGTCATCA 61.026 55.000 32.87 3.62 0.00 3.07
6370 6685 0.745845 AGTTCTGGCGCCATGTCATC 60.746 55.000 32.87 16.65 0.00 2.92
6371 6686 0.745845 GAGTTCTGGCGCCATGTCAT 60.746 55.000 32.87 15.47 0.00 3.06
6372 6687 1.375908 GAGTTCTGGCGCCATGTCA 60.376 57.895 32.87 11.76 0.00 3.58
6373 6688 2.109126 GGAGTTCTGGCGCCATGTC 61.109 63.158 32.87 22.26 0.00 3.06
6374 6689 2.045926 GGAGTTCTGGCGCCATGT 60.046 61.111 32.87 14.95 0.00 3.21
6375 6690 2.046023 TGGAGTTCTGGCGCCATG 60.046 61.111 32.87 23.39 33.45 3.66
6376 6691 1.264749 TAGTGGAGTTCTGGCGCCAT 61.265 55.000 32.87 16.30 40.29 4.40
6377 6692 1.911269 TAGTGGAGTTCTGGCGCCA 60.911 57.895 30.59 30.59 35.99 5.69
6378 6693 1.448013 GTAGTGGAGTTCTGGCGCC 60.448 63.158 22.73 22.73 0.00 6.53
6379 6694 1.014564 GTGTAGTGGAGTTCTGGCGC 61.015 60.000 0.00 0.00 0.00 6.53
6380 6695 0.317160 TGTGTAGTGGAGTTCTGGCG 59.683 55.000 0.00 0.00 0.00 5.69
6381 6696 2.417719 CTTGTGTAGTGGAGTTCTGGC 58.582 52.381 0.00 0.00 0.00 4.85
6382 6697 2.872038 GCCTTGTGTAGTGGAGTTCTGG 60.872 54.545 0.00 0.00 0.00 3.86
6383 6698 2.417719 GCCTTGTGTAGTGGAGTTCTG 58.582 52.381 0.00 0.00 0.00 3.02
6384 6699 1.000955 CGCCTTGTGTAGTGGAGTTCT 59.999 52.381 0.00 0.00 0.00 3.01
6385 6700 1.429463 CGCCTTGTGTAGTGGAGTTC 58.571 55.000 0.00 0.00 0.00 3.01
6386 6701 0.034896 CCGCCTTGTGTAGTGGAGTT 59.965 55.000 0.00 0.00 0.00 3.01
6387 6702 0.830444 TCCGCCTTGTGTAGTGGAGT 60.830 55.000 0.00 0.00 0.00 3.85
6388 6703 0.389948 GTCCGCCTTGTGTAGTGGAG 60.390 60.000 0.00 0.00 29.85 3.86
6389 6704 1.669440 GTCCGCCTTGTGTAGTGGA 59.331 57.895 0.00 0.00 0.00 4.02
6390 6705 1.375523 GGTCCGCCTTGTGTAGTGG 60.376 63.158 0.00 0.00 0.00 4.00
6391 6706 1.736645 CGGTCCGCCTTGTGTAGTG 60.737 63.158 0.00 0.00 0.00 2.74
6392 6707 1.904865 TCGGTCCGCCTTGTGTAGT 60.905 57.895 6.34 0.00 0.00 2.73
6393 6708 1.445582 GTCGGTCCGCCTTGTGTAG 60.446 63.158 6.34 0.00 0.00 2.74
6394 6709 2.652530 GTCGGTCCGCCTTGTGTA 59.347 61.111 6.34 0.00 0.00 2.90
6395 6710 4.657824 CGTCGGTCCGCCTTGTGT 62.658 66.667 6.34 0.00 0.00 3.72
6396 6711 4.657824 ACGTCGGTCCGCCTTGTG 62.658 66.667 6.34 0.00 0.00 3.33
6397 6712 4.657824 CACGTCGGTCCGCCTTGT 62.658 66.667 6.34 0.00 0.00 3.16
6407 6722 2.709125 TTCTGGCAGAACCACGTCGG 62.709 60.000 25.38 2.92 46.36 4.79
6408 6723 1.284982 CTTCTGGCAGAACCACGTCG 61.285 60.000 25.38 10.61 46.36 5.12
6409 6724 0.033504 TCTTCTGGCAGAACCACGTC 59.966 55.000 25.38 0.00 46.36 4.34
6410 6725 0.249911 GTCTTCTGGCAGAACCACGT 60.250 55.000 25.38 0.00 46.36 4.49
6411 6726 0.951040 GGTCTTCTGGCAGAACCACG 60.951 60.000 26.28 17.53 46.36 4.94
6412 6727 0.108585 TGGTCTTCTGGCAGAACCAC 59.891 55.000 28.82 24.05 46.36 4.16
6414 6729 1.072331 TCTTGGTCTTCTGGCAGAACC 59.928 52.381 25.38 25.20 39.84 3.62
6415 6730 2.147150 GTCTTGGTCTTCTGGCAGAAC 58.853 52.381 25.38 17.40 29.89 3.01
6416 6731 1.270305 CGTCTTGGTCTTCTGGCAGAA 60.270 52.381 27.01 27.01 32.50 3.02
6417 6732 0.318441 CGTCTTGGTCTTCTGGCAGA 59.682 55.000 14.43 14.43 0.00 4.26
6418 6733 1.294659 GCGTCTTGGTCTTCTGGCAG 61.295 60.000 8.58 8.58 0.00 4.85
6419 6734 1.301716 GCGTCTTGGTCTTCTGGCA 60.302 57.895 0.00 0.00 0.00 4.92
6420 6735 2.383527 CGCGTCTTGGTCTTCTGGC 61.384 63.158 0.00 0.00 0.00 4.85
6421 6736 2.383527 GCGCGTCTTGGTCTTCTGG 61.384 63.158 8.43 0.00 0.00 3.86
6422 6737 1.621301 CTGCGCGTCTTGGTCTTCTG 61.621 60.000 8.43 0.00 0.00 3.02
6423 6738 1.373497 CTGCGCGTCTTGGTCTTCT 60.373 57.895 8.43 0.00 0.00 2.85
6424 6739 3.016474 GCTGCGCGTCTTGGTCTTC 62.016 63.158 8.43 0.00 0.00 2.87
6425 6740 3.044305 GCTGCGCGTCTTGGTCTT 61.044 61.111 8.43 0.00 0.00 3.01
6436 6751 3.323136 CGACATACCTCGCTGCGC 61.323 66.667 18.65 0.00 0.00 6.09
6443 6758 1.008309 GCTCCGAGCGACATACCTC 60.008 63.158 4.23 0.00 0.00 3.85
6444 6759 1.320344 TTGCTCCGAGCGACATACCT 61.320 55.000 15.58 0.00 46.26 3.08
6445 6760 0.459585 TTTGCTCCGAGCGACATACC 60.460 55.000 15.58 0.00 46.26 2.73
6446 6761 0.645868 GTTTGCTCCGAGCGACATAC 59.354 55.000 15.58 5.63 46.26 2.39
6447 6762 0.800683 CGTTTGCTCCGAGCGACATA 60.801 55.000 20.30 2.77 46.26 2.29
6448 6763 2.094659 CGTTTGCTCCGAGCGACAT 61.095 57.895 20.30 0.00 46.26 3.06
6449 6764 2.733218 CGTTTGCTCCGAGCGACA 60.733 61.111 20.30 7.59 46.26 4.35
6450 6765 2.430244 TCGTTTGCTCCGAGCGAC 60.430 61.111 15.58 14.58 46.26 5.19
6451 6766 2.430244 GTCGTTTGCTCCGAGCGA 60.430 61.111 15.58 11.16 46.26 4.93
6452 6767 3.827784 CGTCGTTTGCTCCGAGCG 61.828 66.667 15.58 1.42 46.26 5.03
6453 6768 3.479269 CCGTCGTTTGCTCCGAGC 61.479 66.667 13.81 13.81 42.82 5.03
6454 6769 2.049433 ACCGTCGTTTGCTCCGAG 60.049 61.111 0.00 0.00 34.56 4.63
6455 6770 2.355363 CACCGTCGTTTGCTCCGA 60.355 61.111 0.00 0.00 0.00 4.55
6456 6771 3.411351 CCACCGTCGTTTGCTCCG 61.411 66.667 0.00 0.00 0.00 4.63
6457 6772 3.723348 GCCACCGTCGTTTGCTCC 61.723 66.667 0.00 0.00 0.00 4.70
6458 6773 1.017177 TATGCCACCGTCGTTTGCTC 61.017 55.000 0.00 0.00 0.00 4.26
6459 6774 0.392461 ATATGCCACCGTCGTTTGCT 60.392 50.000 0.00 0.00 0.00 3.91
6460 6775 1.004292 GTATATGCCACCGTCGTTTGC 60.004 52.381 0.00 0.00 0.00 3.68
6461 6776 2.029970 GTGTATATGCCACCGTCGTTTG 59.970 50.000 0.00 0.00 0.00 2.93
6462 6777 2.273557 GTGTATATGCCACCGTCGTTT 58.726 47.619 0.00 0.00 0.00 3.60
6463 6778 1.205179 TGTGTATATGCCACCGTCGTT 59.795 47.619 5.27 0.00 31.71 3.85
6464 6779 0.818938 TGTGTATATGCCACCGTCGT 59.181 50.000 5.27 0.00 31.71 4.34
6465 6780 1.929230 TTGTGTATATGCCACCGTCG 58.071 50.000 5.27 0.00 31.71 5.12
6466 6781 2.032030 GCATTGTGTATATGCCACCGTC 60.032 50.000 0.00 0.00 41.94 4.79
6467 6782 1.946768 GCATTGTGTATATGCCACCGT 59.053 47.619 0.00 0.00 41.94 4.83
6468 6783 1.946081 TGCATTGTGTATATGCCACCG 59.054 47.619 5.47 0.00 46.05 4.94
6469 6784 4.300803 CAATGCATTGTGTATATGCCACC 58.699 43.478 27.81 0.00 46.05 4.61
6493 6808 1.221414 CCATCGAGCGGAGAAATTCC 58.779 55.000 0.00 0.00 43.04 3.01
6494 6809 0.583917 GCCATCGAGCGGAGAAATTC 59.416 55.000 7.83 0.00 0.00 2.17
6495 6810 0.179000 AGCCATCGAGCGGAGAAATT 59.821 50.000 7.83 0.00 38.01 1.82
6496 6811 0.249657 GAGCCATCGAGCGGAGAAAT 60.250 55.000 7.83 0.00 38.01 2.17
6497 6812 1.141881 GAGCCATCGAGCGGAGAAA 59.858 57.895 7.83 0.00 38.01 2.52
6498 6813 2.009424 CTGAGCCATCGAGCGGAGAA 62.009 60.000 7.83 0.00 38.01 2.87
6499 6814 2.440247 TGAGCCATCGAGCGGAGA 60.440 61.111 7.83 0.00 38.01 3.71
6500 6815 2.027314 CTGAGCCATCGAGCGGAG 59.973 66.667 7.83 0.00 38.01 4.63
6501 6816 4.212913 GCTGAGCCATCGAGCGGA 62.213 66.667 7.83 0.00 38.01 5.54
6503 6818 4.559229 TCGCTGAGCCATCGAGCG 62.559 66.667 6.29 6.29 45.84 5.03
6504 6819 2.657944 CTCGCTGAGCCATCGAGC 60.658 66.667 13.00 0.00 41.74 5.03
6523 6838 3.723348 GACTTGGTTGCCGGACGC 61.723 66.667 5.05 0.00 38.31 5.19
6524 6839 3.411351 CGACTTGGTTGCCGGACG 61.411 66.667 5.05 0.00 0.00 4.79
6525 6840 3.047877 CCGACTTGGTTGCCGGAC 61.048 66.667 5.05 0.00 44.29 4.79
6530 6845 4.389576 CAGCGCCGACTTGGTTGC 62.390 66.667 2.29 0.00 41.21 4.17
6531 6846 4.389576 GCAGCGCCGACTTGGTTG 62.390 66.667 2.29 0.00 41.21 3.77
6532 6847 4.927782 TGCAGCGCCGACTTGGTT 62.928 61.111 2.29 0.00 41.21 3.67
6533 6848 4.704833 ATGCAGCGCCGACTTGGT 62.705 61.111 2.29 0.00 41.21 3.67
6534 6849 4.170062 CATGCAGCGCCGACTTGG 62.170 66.667 2.29 0.00 42.50 3.61
6535 6850 4.824166 GCATGCAGCGCCGACTTG 62.824 66.667 14.21 3.52 0.00 3.16
6548 6863 3.826754 CTGCTGGCCTGCTGCATG 61.827 66.667 31.50 14.64 43.89 4.06
6552 6867 4.052229 GTTGCTGCTGGCCTGCTG 62.052 66.667 31.50 30.42 40.92 4.41
6556 6871 4.269523 TTCGGTTGCTGCTGGCCT 62.270 61.111 3.32 0.00 40.92 5.19
6557 6872 3.741476 CTTCGGTTGCTGCTGGCC 61.741 66.667 0.00 0.00 40.92 5.36
6558 6873 3.741476 CCTTCGGTTGCTGCTGGC 61.741 66.667 0.00 0.00 42.22 4.85
6559 6874 3.741476 GCCTTCGGTTGCTGCTGG 61.741 66.667 0.00 0.00 0.00 4.85
6560 6875 2.974489 CTGCCTTCGGTTGCTGCTG 61.974 63.158 0.00 0.00 0.00 4.41
6561 6876 2.670934 CTGCCTTCGGTTGCTGCT 60.671 61.111 0.00 0.00 0.00 4.24
6562 6877 4.410743 GCTGCCTTCGGTTGCTGC 62.411 66.667 0.00 0.00 43.48 5.25
6563 6878 2.974489 CTGCTGCCTTCGGTTGCTG 61.974 63.158 0.00 0.00 0.00 4.41
6564 6879 2.670934 CTGCTGCCTTCGGTTGCT 60.671 61.111 0.00 0.00 0.00 3.91
6565 6880 4.410743 GCTGCTGCCTTCGGTTGC 62.411 66.667 3.85 0.00 0.00 4.17
6566 6881 2.670934 AGCTGCTGCCTTCGGTTG 60.671 61.111 12.44 0.00 40.80 3.77
6567 6882 2.670934 CAGCTGCTGCCTTCGGTT 60.671 61.111 17.73 0.00 40.80 4.44
6576 6891 2.671177 GGTGTACGTGCAGCTGCTG 61.671 63.158 36.61 29.74 42.66 4.41
6577 6892 2.357517 GGTGTACGTGCAGCTGCT 60.358 61.111 36.61 21.18 42.66 4.24
6578 6893 3.777925 CGGTGTACGTGCAGCTGC 61.778 66.667 31.89 31.89 42.50 5.25
6579 6894 3.777925 GCGGTGTACGTGCAGCTG 61.778 66.667 28.54 22.69 46.52 4.24
6597 6912 3.629883 ATTGTGCATGCCAACGCCG 62.630 57.895 16.68 0.00 0.00 6.46
6598 6913 1.806758 GATTGTGCATGCCAACGCC 60.807 57.895 16.68 8.24 0.00 5.68
6599 6914 1.806758 GGATTGTGCATGCCAACGC 60.807 57.895 16.68 13.36 0.00 4.84
6600 6915 0.457166 CTGGATTGTGCATGCCAACG 60.457 55.000 16.68 5.38 0.00 4.10
6601 6916 0.604578 ACTGGATTGTGCATGCCAAC 59.395 50.000 16.68 8.33 0.00 3.77
6602 6917 0.604073 CACTGGATTGTGCATGCCAA 59.396 50.000 16.68 18.38 0.00 4.52
6603 6918 1.252215 CCACTGGATTGTGCATGCCA 61.252 55.000 16.68 10.08 36.68 4.92
6604 6919 0.966875 TCCACTGGATTGTGCATGCC 60.967 55.000 16.68 7.25 36.68 4.40
6605 6920 0.171903 GTCCACTGGATTGTGCATGC 59.828 55.000 11.82 11.82 36.68 4.06
6606 6921 1.536940 TGTCCACTGGATTGTGCATG 58.463 50.000 0.00 0.00 36.68 4.06
6607 6922 2.165167 CTTGTCCACTGGATTGTGCAT 58.835 47.619 0.00 0.00 36.68 3.96
6608 6923 1.608055 CTTGTCCACTGGATTGTGCA 58.392 50.000 0.00 0.00 36.68 4.57
6609 6924 0.242017 GCTTGTCCACTGGATTGTGC 59.758 55.000 0.00 0.78 36.68 4.57
6610 6925 0.883833 GGCTTGTCCACTGGATTGTG 59.116 55.000 0.00 0.00 37.66 3.33
6611 6926 0.606401 CGGCTTGTCCACTGGATTGT 60.606 55.000 0.00 0.00 32.73 2.71
6612 6927 1.308069 CCGGCTTGTCCACTGGATTG 61.308 60.000 0.00 0.00 33.88 2.67
6613 6928 1.002134 CCGGCTTGTCCACTGGATT 60.002 57.895 0.00 0.00 33.88 3.01
6614 6929 1.274703 ATCCGGCTTGTCCACTGGAT 61.275 55.000 0.00 0.00 45.03 3.41
6615 6930 1.918293 ATCCGGCTTGTCCACTGGA 60.918 57.895 0.00 0.00 45.28 3.86
6616 6931 1.746615 CATCCGGCTTGTCCACTGG 60.747 63.158 0.00 0.00 34.01 4.00
6617 6932 1.746615 CCATCCGGCTTGTCCACTG 60.747 63.158 0.00 0.00 34.01 3.66
6618 6933 2.224159 ACCATCCGGCTTGTCCACT 61.224 57.895 0.00 0.00 34.57 4.00
6619 6934 2.040544 CACCATCCGGCTTGTCCAC 61.041 63.158 0.00 0.00 34.57 4.02
6620 6935 2.350895 CACCATCCGGCTTGTCCA 59.649 61.111 0.00 0.00 34.57 4.02
6621 6936 2.438434 CCACCATCCGGCTTGTCC 60.438 66.667 0.00 0.00 34.57 4.02
6622 6937 2.040544 CACCACCATCCGGCTTGTC 61.041 63.158 0.00 0.00 34.57 3.18
6623 6938 2.034066 CACCACCATCCGGCTTGT 59.966 61.111 0.00 0.00 34.57 3.16
6624 6939 2.751436 CCACCACCATCCGGCTTG 60.751 66.667 0.00 0.00 34.57 4.01
6625 6940 4.740822 GCCACCACCATCCGGCTT 62.741 66.667 0.00 0.00 41.50 4.35
6636 6951 1.073025 CAGCTTGTAGTGGCCACCA 59.927 57.895 32.29 20.96 0.00 4.17
6637 6952 0.955919 GACAGCTTGTAGTGGCCACC 60.956 60.000 32.29 18.42 0.00 4.61
6638 6953 0.035458 AGACAGCTTGTAGTGGCCAC 59.965 55.000 29.22 29.22 0.00 5.01
6639 6954 0.035317 CAGACAGCTTGTAGTGGCCA 59.965 55.000 0.00 0.00 0.00 5.36
6640 6955 1.301677 GCAGACAGCTTGTAGTGGCC 61.302 60.000 0.00 0.00 41.15 5.36
6641 6956 0.603707 TGCAGACAGCTTGTAGTGGC 60.604 55.000 0.00 0.00 45.94 5.01
6642 6957 1.532868 GTTGCAGACAGCTTGTAGTGG 59.467 52.381 0.00 0.00 45.94 4.00
6643 6958 2.212652 TGTTGCAGACAGCTTGTAGTG 58.787 47.619 0.00 0.00 45.94 2.74
6644 6959 2.620251 TGTTGCAGACAGCTTGTAGT 57.380 45.000 0.00 0.00 45.94 2.73
6653 6968 1.227943 GGTGGAGCTGTTGCAGACA 60.228 57.895 0.00 0.00 42.74 3.41
6654 6969 0.819259 TTGGTGGAGCTGTTGCAGAC 60.819 55.000 0.00 0.00 42.74 3.51
6655 6970 0.819259 GTTGGTGGAGCTGTTGCAGA 60.819 55.000 0.00 0.00 42.74 4.26
6656 6971 1.656441 GTTGGTGGAGCTGTTGCAG 59.344 57.895 0.00 0.00 42.74 4.41
6657 6972 2.186160 CGTTGGTGGAGCTGTTGCA 61.186 57.895 0.00 0.00 42.74 4.08
6658 6973 1.845809 CTCGTTGGTGGAGCTGTTGC 61.846 60.000 0.00 0.00 40.05 4.17
6659 6974 2.238353 CTCGTTGGTGGAGCTGTTG 58.762 57.895 0.00 0.00 0.00 3.33
6660 6975 4.779475 CTCGTTGGTGGAGCTGTT 57.221 55.556 0.00 0.00 0.00 3.16
6665 6980 0.888619 TAGTGAGCTCGTTGGTGGAG 59.111 55.000 9.64 0.00 34.62 3.86
6666 6981 0.601558 GTAGTGAGCTCGTTGGTGGA 59.398 55.000 9.64 0.00 0.00 4.02
6667 6982 0.389948 GGTAGTGAGCTCGTTGGTGG 60.390 60.000 9.64 0.00 0.00 4.61
6668 6983 0.317160 TGGTAGTGAGCTCGTTGGTG 59.683 55.000 9.64 0.00 0.00 4.17
6669 6984 0.317479 GTGGTAGTGAGCTCGTTGGT 59.683 55.000 9.64 0.00 0.00 3.67
6670 6985 0.317160 TGTGGTAGTGAGCTCGTTGG 59.683 55.000 9.64 0.00 0.00 3.77
6671 6986 1.995484 CATGTGGTAGTGAGCTCGTTG 59.005 52.381 9.64 0.00 0.00 4.10
6672 6987 1.066858 CCATGTGGTAGTGAGCTCGTT 60.067 52.381 9.64 1.87 0.00 3.85
6673 6988 0.532573 CCATGTGGTAGTGAGCTCGT 59.467 55.000 9.64 0.96 0.00 4.18
6674 6989 0.817654 TCCATGTGGTAGTGAGCTCG 59.182 55.000 9.64 0.00 36.34 5.03
6675 6990 1.827969 ACTCCATGTGGTAGTGAGCTC 59.172 52.381 6.82 6.82 36.34 4.09
6676 6991 1.552337 CACTCCATGTGGTAGTGAGCT 59.448 52.381 18.64 0.00 41.56 4.09
6677 6992 2.009042 GCACTCCATGTGGTAGTGAGC 61.009 57.143 23.66 12.88 46.27 4.26
6678 6993 2.015736 GCACTCCATGTGGTAGTGAG 57.984 55.000 23.66 8.69 46.27 3.51
6685 7000 3.134623 TCCATTACTAGCACTCCATGTGG 59.865 47.826 0.00 0.00 46.27 4.17
6687 7002 4.202398 CCATCCATTACTAGCACTCCATGT 60.202 45.833 0.00 0.00 0.00 3.21
6688 7003 4.321718 CCATCCATTACTAGCACTCCATG 58.678 47.826 0.00 0.00 0.00 3.66
6689 7004 3.328931 CCCATCCATTACTAGCACTCCAT 59.671 47.826 0.00 0.00 0.00 3.41
6690 7005 2.705658 CCCATCCATTACTAGCACTCCA 59.294 50.000 0.00 0.00 0.00 3.86
6691 7006 2.551071 GCCCATCCATTACTAGCACTCC 60.551 54.545 0.00 0.00 0.00 3.85
6692 7007 2.370189 AGCCCATCCATTACTAGCACTC 59.630 50.000 0.00 0.00 0.00 3.51
6693 7008 2.412591 AGCCCATCCATTACTAGCACT 58.587 47.619 0.00 0.00 0.00 4.40
6694 7009 2.938956 AGCCCATCCATTACTAGCAC 57.061 50.000 0.00 0.00 0.00 4.40
6695 7010 3.313791 TGTAGCCCATCCATTACTAGCA 58.686 45.455 0.00 0.00 0.00 3.49
6696 7011 4.351874 TTGTAGCCCATCCATTACTAGC 57.648 45.455 0.00 0.00 0.00 3.42
6697 7012 6.540189 GCATATTGTAGCCCATCCATTACTAG 59.460 42.308 0.00 0.00 0.00 2.57
6698 7013 6.414732 GCATATTGTAGCCCATCCATTACTA 58.585 40.000 0.00 0.00 0.00 1.82
6699 7014 5.256474 GCATATTGTAGCCCATCCATTACT 58.744 41.667 0.00 0.00 0.00 2.24
6700 7015 4.094887 CGCATATTGTAGCCCATCCATTAC 59.905 45.833 0.00 0.00 0.00 1.89
6701 7016 4.260985 CGCATATTGTAGCCCATCCATTA 58.739 43.478 0.00 0.00 0.00 1.90
6702 7017 3.084039 CGCATATTGTAGCCCATCCATT 58.916 45.455 0.00 0.00 0.00 3.16
6703 7018 2.715046 CGCATATTGTAGCCCATCCAT 58.285 47.619 0.00 0.00 0.00 3.41
6704 7019 1.881925 GCGCATATTGTAGCCCATCCA 60.882 52.381 0.30 0.00 0.00 3.41
6705 7020 0.804989 GCGCATATTGTAGCCCATCC 59.195 55.000 0.30 0.00 0.00 3.51
6706 7021 1.522668 TGCGCATATTGTAGCCCATC 58.477 50.000 5.66 0.00 0.00 3.51
6707 7022 1.608590 GTTGCGCATATTGTAGCCCAT 59.391 47.619 12.75 0.00 0.00 4.00
6708 7023 1.021202 GTTGCGCATATTGTAGCCCA 58.979 50.000 12.75 0.00 0.00 5.36
6709 7024 0.041312 CGTTGCGCATATTGTAGCCC 60.041 55.000 12.75 0.00 0.00 5.19
6710 7025 0.655733 ACGTTGCGCATATTGTAGCC 59.344 50.000 12.75 0.00 0.00 3.93
6711 7026 1.593006 AGACGTTGCGCATATTGTAGC 59.407 47.619 12.75 0.00 0.00 3.58
6712 7027 4.042398 ACTAGACGTTGCGCATATTGTAG 58.958 43.478 12.75 12.58 0.00 2.74
6713 7028 4.036567 ACTAGACGTTGCGCATATTGTA 57.963 40.909 12.75 0.00 0.00 2.41
6714 7029 2.888594 ACTAGACGTTGCGCATATTGT 58.111 42.857 12.75 7.56 0.00 2.71
6715 7030 5.383984 TTTACTAGACGTTGCGCATATTG 57.616 39.130 12.75 3.79 0.00 1.90
6716 7031 5.006358 CCTTTTACTAGACGTTGCGCATATT 59.994 40.000 12.75 0.00 0.00 1.28
6717 7032 4.506654 CCTTTTACTAGACGTTGCGCATAT 59.493 41.667 12.75 0.00 0.00 1.78
6718 7033 3.861113 CCTTTTACTAGACGTTGCGCATA 59.139 43.478 12.75 0.00 0.00 3.14
6719 7034 2.671396 CCTTTTACTAGACGTTGCGCAT 59.329 45.455 12.75 0.00 0.00 4.73
6720 7035 2.063266 CCTTTTACTAGACGTTGCGCA 58.937 47.619 5.66 5.66 0.00 6.09
6721 7036 2.331194 TCCTTTTACTAGACGTTGCGC 58.669 47.619 0.00 0.00 0.00 6.09
6722 7037 3.607209 GTCTCCTTTTACTAGACGTTGCG 59.393 47.826 0.00 0.00 31.16 4.85
6728 7043 3.057033 TGGCACGTCTCCTTTTACTAGAC 60.057 47.826 0.00 0.00 36.99 2.59
6729 7044 3.057033 GTGGCACGTCTCCTTTTACTAGA 60.057 47.826 0.00 0.00 0.00 2.43
6730 7045 3.251571 GTGGCACGTCTCCTTTTACTAG 58.748 50.000 0.00 0.00 0.00 2.57
6731 7046 2.629137 TGTGGCACGTCTCCTTTTACTA 59.371 45.455 13.77 0.00 0.00 1.82
6732 7047 1.414919 TGTGGCACGTCTCCTTTTACT 59.585 47.619 13.77 0.00 0.00 2.24
6733 7048 1.873698 TGTGGCACGTCTCCTTTTAC 58.126 50.000 13.77 0.00 0.00 2.01
6734 7049 2.158871 ACTTGTGGCACGTCTCCTTTTA 60.159 45.455 13.77 0.00 0.00 1.52
6735 7050 1.308998 CTTGTGGCACGTCTCCTTTT 58.691 50.000 13.77 0.00 0.00 2.27
6736 7051 0.180406 ACTTGTGGCACGTCTCCTTT 59.820 50.000 13.77 0.00 0.00 3.11
6737 7052 0.180406 AACTTGTGGCACGTCTCCTT 59.820 50.000 13.77 0.00 0.00 3.36
6738 7053 1.000955 CTAACTTGTGGCACGTCTCCT 59.999 52.381 13.77 0.00 0.00 3.69
6739 7054 1.429463 CTAACTTGTGGCACGTCTCC 58.571 55.000 13.77 0.00 0.00 3.71
6740 7055 0.790814 GCTAACTTGTGGCACGTCTC 59.209 55.000 13.77 0.00 32.95 3.36
6741 7056 0.393077 AGCTAACTTGTGGCACGTCT 59.607 50.000 13.77 0.00 35.82 4.18
6742 7057 0.512952 CAGCTAACTTGTGGCACGTC 59.487 55.000 13.77 0.00 35.82 4.34
6743 7058 1.507141 GCAGCTAACTTGTGGCACGT 61.507 55.000 13.77 2.41 35.82 4.49
6744 7059 1.207593 GCAGCTAACTTGTGGCACG 59.792 57.895 13.77 1.69 35.82 5.34
6745 7060 1.207593 CGCAGCTAACTTGTGGCAC 59.792 57.895 11.55 11.55 35.82 5.01
6746 7061 1.965930 CCGCAGCTAACTTGTGGCA 60.966 57.895 0.00 0.00 39.15 4.92
6747 7062 2.870372 CCGCAGCTAACTTGTGGC 59.130 61.111 0.00 0.00 39.15 5.01
6749 7064 0.602638 TGGACCGCAGCTAACTTGTG 60.603 55.000 0.00 0.00 0.00 3.33
6750 7065 0.324943 ATGGACCGCAGCTAACTTGT 59.675 50.000 0.00 0.00 0.00 3.16
6751 7066 1.009829 GATGGACCGCAGCTAACTTG 58.990 55.000 0.00 0.00 0.00 3.16
6752 7067 0.905357 AGATGGACCGCAGCTAACTT 59.095 50.000 0.00 0.00 0.00 2.66
6753 7068 1.683917 CTAGATGGACCGCAGCTAACT 59.316 52.381 0.00 0.00 0.00 2.24
6754 7069 1.409427 ACTAGATGGACCGCAGCTAAC 59.591 52.381 0.00 0.00 0.00 2.34
6755 7070 1.409064 CACTAGATGGACCGCAGCTAA 59.591 52.381 0.00 0.00 0.00 3.09
6756 7071 1.032794 CACTAGATGGACCGCAGCTA 58.967 55.000 0.00 0.00 0.00 3.32
6757 7072 0.972983 ACACTAGATGGACCGCAGCT 60.973 55.000 0.00 0.00 0.00 4.24
6758 7073 0.108138 AACACTAGATGGACCGCAGC 60.108 55.000 0.00 0.00 0.00 5.25
6759 7074 1.645034 CAACACTAGATGGACCGCAG 58.355 55.000 0.00 0.00 0.00 5.18
6760 7075 0.391130 GCAACACTAGATGGACCGCA 60.391 55.000 0.00 0.00 0.00 5.69
6761 7076 0.108138 AGCAACACTAGATGGACCGC 60.108 55.000 0.00 0.00 0.00 5.68
6762 7077 1.645034 CAGCAACACTAGATGGACCG 58.355 55.000 0.00 0.00 0.00 4.79
6763 7078 2.014068 GCCAGCAACACTAGATGGACC 61.014 57.143 1.12 0.00 32.55 4.46
6764 7079 1.065854 AGCCAGCAACACTAGATGGAC 60.066 52.381 1.12 0.00 32.55 4.02
6765 7080 1.279496 AGCCAGCAACACTAGATGGA 58.721 50.000 1.12 0.00 32.55 3.41
6766 7081 2.012673 GAAGCCAGCAACACTAGATGG 58.987 52.381 0.00 0.00 0.00 3.51
6767 7082 2.417933 GTGAAGCCAGCAACACTAGATG 59.582 50.000 0.00 0.00 0.00 2.90
6768 7083 2.304180 AGTGAAGCCAGCAACACTAGAT 59.696 45.455 16.11 0.00 40.96 1.98
6769 7084 1.694150 AGTGAAGCCAGCAACACTAGA 59.306 47.619 16.11 0.00 40.96 2.43
6770 7085 2.175878 AGTGAAGCCAGCAACACTAG 57.824 50.000 16.11 0.00 40.96 2.57
6771 7086 2.612972 GCTAGTGAAGCCAGCAACACTA 60.613 50.000 19.70 19.70 46.25 2.74
6772 7087 1.879796 GCTAGTGAAGCCAGCAACACT 60.880 52.381 19.61 19.61 46.25 3.55
6773 7088 0.519077 GCTAGTGAAGCCAGCAACAC 59.481 55.000 9.93 9.93 46.25 3.32
6774 7089 2.932663 GCTAGTGAAGCCAGCAACA 58.067 52.632 0.00 0.00 46.25 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.