Multiple sequence alignment - TraesCS5A01G198900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G198900 chr5A 100.000 2979 0 0 1 2979 403755397 403758375 0.000000e+00 5502.0
1 TraesCS5A01G198900 chr5A 76.132 574 84 33 1107 1667 663769657 663769124 4.930000e-63 252.0
2 TraesCS5A01G198900 chr5B 91.030 3010 149 38 1 2979 356214076 356216995 0.000000e+00 3951.0
3 TraesCS5A01G198900 chr5B 79.562 137 25 3 2772 2906 548315864 548315999 8.790000e-16 95.3
4 TraesCS5A01G198900 chr5D 91.933 2876 126 33 135 2979 310257987 310260787 0.000000e+00 3928.0
5 TraesCS5A01G198900 chr5D 77.852 298 53 11 2691 2979 521087882 521088175 3.950000e-39 172.0
6 TraesCS5A01G198900 chr4D 76.789 573 91 31 1107 1667 483837733 483837191 1.750000e-72 283.0
7 TraesCS5A01G198900 chr4B 81.931 321 38 10 1354 1667 614280289 614279982 1.370000e-63 254.0
8 TraesCS5A01G198900 chr1A 78.142 183 36 4 2771 2950 112801100 112800919 2.430000e-21 113.0
9 TraesCS5A01G198900 chr2B 84.762 105 14 2 2772 2875 682239496 682239393 1.460000e-18 104.0
10 TraesCS5A01G198900 chr7A 75.521 192 40 7 2688 2875 672854518 672854330 1.470000e-13 87.9
11 TraesCS5A01G198900 chr7D 84.884 86 12 1 2776 2861 596606170 596606086 5.290000e-13 86.1
12 TraesCS5A01G198900 chr6D 82.178 101 14 4 2770 2868 62239743 62239645 1.900000e-12 84.2
13 TraesCS5A01G198900 chr6D 77.419 124 25 3 2753 2875 153164536 153164415 1.480000e-08 71.3
14 TraesCS5A01G198900 chr3B 94.595 37 1 1 1203 1238 462234075 462234111 4.150000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G198900 chr5A 403755397 403758375 2978 False 5502 5502 100.000 1 2979 1 chr5A.!!$F1 2978
1 TraesCS5A01G198900 chr5A 663769124 663769657 533 True 252 252 76.132 1107 1667 1 chr5A.!!$R1 560
2 TraesCS5A01G198900 chr5B 356214076 356216995 2919 False 3951 3951 91.030 1 2979 1 chr5B.!!$F1 2978
3 TraesCS5A01G198900 chr5D 310257987 310260787 2800 False 3928 3928 91.933 135 2979 1 chr5D.!!$F1 2844
4 TraesCS5A01G198900 chr4D 483837191 483837733 542 True 283 283 76.789 1107 1667 1 chr4D.!!$R1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
420 424 0.593128 AAAAGTGTGTGGCATCTCGC 59.407 50.0 0.00 0.0 41.28 5.03 F
1191 1218 0.173708 GCCTCGACGAGTTCCTCAAT 59.826 55.0 22.61 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1688 1739 0.872388 CAAGGGTTCAAGGTACGTGC 59.128 55.0 0.0 0.0 37.84 5.34 R
2728 2792 0.324614 CTGCCCCATGTCCGCATATA 59.675 55.0 0.0 0.0 33.30 0.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 76 1.448119 TTTTGGATCACGTTGCGGCA 61.448 50.000 0.00 0.00 0.00 5.69
118 120 4.980805 GGTGGCCACGTCGCAGAA 62.981 66.667 29.08 0.00 39.69 3.02
127 129 1.197949 CACGTCGCAGAAAGAGAGAGA 59.802 52.381 0.00 0.00 39.69 3.10
128 130 1.880675 ACGTCGCAGAAAGAGAGAGAA 59.119 47.619 0.00 0.00 39.69 2.87
129 131 2.293677 ACGTCGCAGAAAGAGAGAGAAA 59.706 45.455 0.00 0.00 39.69 2.52
131 133 3.365465 CGTCGCAGAAAGAGAGAGAAAGA 60.365 47.826 0.00 0.00 39.69 2.52
238 242 7.174253 TCCAAGACAACAATTACTGGAACATAC 59.826 37.037 0.00 0.00 38.20 2.39
249 253 7.979444 TTACTGGAACATACAAGAGGAAAAG 57.021 36.000 0.00 0.00 38.20 2.27
257 261 1.425448 ACAAGAGGAAAAGTGGAGGGG 59.575 52.381 0.00 0.00 0.00 4.79
267 271 3.653835 AAGTGGAGGGGAAATAGCTTC 57.346 47.619 0.00 0.00 0.00 3.86
420 424 0.593128 AAAAGTGTGTGGCATCTCGC 59.407 50.000 0.00 0.00 41.28 5.03
506 510 9.869757 TTTTTCGATATACATTCAGAGTTCAGA 57.130 29.630 0.00 0.00 0.00 3.27
507 511 8.858003 TTTCGATATACATTCAGAGTTCAGAC 57.142 34.615 0.00 0.00 0.00 3.51
508 512 6.971602 TCGATATACATTCAGAGTTCAGACC 58.028 40.000 0.00 0.00 0.00 3.85
601 613 6.979817 GCATCAAATCAGTAATAATGTTGGCA 59.020 34.615 0.00 0.00 0.00 4.92
669 681 2.815647 GGGCGCTCAGTACTGTGC 60.816 66.667 30.85 30.85 44.07 4.57
677 689 2.159653 GCTCAGTACTGTGCGGAATTTG 60.160 50.000 28.30 0.00 39.73 2.32
678 690 1.804151 TCAGTACTGTGCGGAATTTGC 59.196 47.619 21.99 0.00 0.00 3.68
870 883 2.672996 CCCACCCCAGCAAACTCG 60.673 66.667 0.00 0.00 0.00 4.18
939 952 3.253838 CCCTTGACCCCGTCCCAA 61.254 66.667 0.00 0.00 0.00 4.12
982 1009 3.606384 CGCAGCATTAGCAAAGATAGCAG 60.606 47.826 0.00 0.00 45.49 4.24
983 1010 3.852572 GCAGCATTAGCAAAGATAGCAGC 60.853 47.826 0.00 0.00 45.49 5.25
984 1011 3.314357 CAGCATTAGCAAAGATAGCAGCA 59.686 43.478 0.00 0.00 45.49 4.41
1191 1218 0.173708 GCCTCGACGAGTTCCTCAAT 59.826 55.000 22.61 0.00 0.00 2.57
1299 1338 1.001597 GACTCGTGGTTCGACTTCACT 60.002 52.381 9.35 0.00 44.01 3.41
1655 1706 0.617413 ATGCTCACCCTCCTGAACAG 59.383 55.000 0.00 0.00 0.00 3.16
1688 1739 1.573829 AACACAGCCACGGCATTACG 61.574 55.000 11.35 0.00 44.88 3.18
1689 1740 3.124921 ACAGCCACGGCATTACGC 61.125 61.111 11.35 0.00 44.88 4.42
1701 1752 1.727880 GCATTACGCACGTACCTTGAA 59.272 47.619 1.73 0.00 41.79 2.69
1703 1754 1.782044 TTACGCACGTACCTTGAACC 58.218 50.000 1.73 0.00 0.00 3.62
1704 1755 0.038343 TACGCACGTACCTTGAACCC 60.038 55.000 0.00 0.00 0.00 4.11
1706 1757 0.601841 CGCACGTACCTTGAACCCTT 60.602 55.000 0.00 0.00 0.00 3.95
1707 1758 0.872388 GCACGTACCTTGAACCCTTG 59.128 55.000 0.00 0.00 0.00 3.61
1708 1759 1.541670 GCACGTACCTTGAACCCTTGA 60.542 52.381 0.00 0.00 0.00 3.02
1710 1761 3.000727 CACGTACCTTGAACCCTTGATC 58.999 50.000 0.00 0.00 0.00 2.92
1711 1762 2.635915 ACGTACCTTGAACCCTTGATCA 59.364 45.455 0.00 0.00 0.00 2.92
1739 1792 3.932710 TCTCGTTCAATGCAGTACCAATC 59.067 43.478 0.00 0.00 0.00 2.67
1747 1800 5.470437 TCAATGCAGTACCAATCGTGTTAAA 59.530 36.000 0.00 0.00 0.00 1.52
1749 1802 5.351233 TGCAGTACCAATCGTGTTAAAAG 57.649 39.130 0.00 0.00 0.00 2.27
1750 1803 5.057819 TGCAGTACCAATCGTGTTAAAAGA 58.942 37.500 0.00 0.00 0.00 2.52
2079 2132 2.899044 TTTTTGAGAACGCCGCCGG 61.899 57.895 0.00 0.00 39.22 6.13
2359 2421 2.304761 TGGTGACTGATAGTTGGGGTTC 59.695 50.000 0.00 0.00 0.00 3.62
2481 2543 4.400251 TGTCCCTAAGTACATGGTTAGTCG 59.600 45.833 0.00 0.00 0.00 4.18
2587 2649 8.952278 TGCTAATCAGTTCGGTGTTTTTATATT 58.048 29.630 0.00 0.00 0.00 1.28
2634 2696 8.038944 TGTTTCACTTAGGAAAGCGATTAGTAT 58.961 33.333 0.00 0.00 37.44 2.12
2697 2761 2.763292 AGCGCTCAGGGCATCTCT 60.763 61.111 17.22 0.00 44.06 3.10
2700 2764 0.599728 GCGCTCAGGGCATCTCTAAG 60.600 60.000 9.24 0.00 41.23 2.18
2709 2773 1.001406 GGCATCTCTAAGGATGACCCG 59.999 57.143 8.41 0.00 43.79 5.28
2740 2804 2.735151 TCGGGATCTATATGCGGACAT 58.265 47.619 0.00 0.00 40.49 3.06
2782 2846 0.679960 ACCTAAAGCGGCCATCCAAC 60.680 55.000 2.24 0.00 0.00 3.77
2800 2864 1.312371 ACGCTGCCCGCATACATTTT 61.312 50.000 0.00 0.00 41.76 1.82
2807 2871 5.078411 TGCCCGCATACATTTTAAAACAT 57.922 34.783 1.97 0.00 0.00 2.71
2843 2908 5.150683 CGAAGGAAATTAATGCAAACACGA 58.849 37.500 0.00 0.00 0.00 4.35
2845 2910 5.446143 AGGAAATTAATGCAAACACGACA 57.554 34.783 0.00 0.00 0.00 4.35
2846 2911 5.837437 AGGAAATTAATGCAAACACGACAA 58.163 33.333 0.00 0.00 0.00 3.18
2863 2928 7.036220 ACACGACAAATTTTCATACAAACCAA 58.964 30.769 0.00 0.00 0.00 3.67
2865 2930 8.547069 CACGACAAATTTTCATACAAACCAAAT 58.453 29.630 0.00 0.00 0.00 2.32
2906 2971 8.924691 CATGACGGTTTTGATTACATTTCAAAT 58.075 29.630 0.22 0.00 41.36 2.32
2949 3015 6.215841 TGTTCCAACCATAAACCTATCCTACA 59.784 38.462 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.573967 TCTTTTCTTGAGCAATGGTTCCC 59.426 43.478 0.00 0.00 0.00 3.97
92 94 3.948719 GTGGCCACCCTGACGGAA 61.949 66.667 26.31 0.00 34.64 4.30
118 120 1.190643 CGCCCCTCTTTCTCTCTCTT 58.809 55.000 0.00 0.00 0.00 2.85
127 129 0.613777 CTCTGTAACCGCCCCTCTTT 59.386 55.000 0.00 0.00 0.00 2.52
128 130 0.252103 TCTCTGTAACCGCCCCTCTT 60.252 55.000 0.00 0.00 0.00 2.85
129 131 0.252103 TTCTCTGTAACCGCCCCTCT 60.252 55.000 0.00 0.00 0.00 3.69
131 133 0.541863 CATTCTCTGTAACCGCCCCT 59.458 55.000 0.00 0.00 0.00 4.79
238 242 1.705186 TCCCCTCCACTTTTCCTCTTG 59.295 52.381 0.00 0.00 0.00 3.02
249 253 1.209747 ACGAAGCTATTTCCCCTCCAC 59.790 52.381 0.00 0.00 31.82 4.02
257 261 4.630069 TCTGTGGCTAAACGAAGCTATTTC 59.370 41.667 8.59 0.00 42.37 2.17
267 271 0.433492 CGTCGTTCTGTGGCTAAACG 59.567 55.000 0.00 0.00 45.24 3.60
412 416 6.418226 CCGTATTCTATATTTAGGCGAGATGC 59.582 42.308 0.00 0.00 45.38 3.91
447 451 0.034059 ATCGAGAATAAGGCGCAGGG 59.966 55.000 10.83 0.00 0.00 4.45
481 485 9.302345 GTCTGAACTCTGAATGTATATCGAAAA 57.698 33.333 0.00 0.00 0.00 2.29
482 486 7.921214 GGTCTGAACTCTGAATGTATATCGAAA 59.079 37.037 0.00 0.00 0.00 3.46
483 487 7.426410 GGTCTGAACTCTGAATGTATATCGAA 58.574 38.462 0.00 0.00 0.00 3.71
484 488 6.016192 GGGTCTGAACTCTGAATGTATATCGA 60.016 42.308 0.00 0.00 0.00 3.59
485 489 6.153067 GGGTCTGAACTCTGAATGTATATCG 58.847 44.000 0.00 0.00 0.00 2.92
486 490 6.042093 TGGGGTCTGAACTCTGAATGTATATC 59.958 42.308 0.00 0.00 0.00 1.63
487 491 5.905331 TGGGGTCTGAACTCTGAATGTATAT 59.095 40.000 0.00 0.00 0.00 0.86
488 492 5.277250 TGGGGTCTGAACTCTGAATGTATA 58.723 41.667 0.00 0.00 0.00 1.47
489 493 4.104086 TGGGGTCTGAACTCTGAATGTAT 58.896 43.478 0.00 0.00 0.00 2.29
490 494 3.516586 TGGGGTCTGAACTCTGAATGTA 58.483 45.455 0.00 0.00 0.00 2.29
491 495 2.338809 TGGGGTCTGAACTCTGAATGT 58.661 47.619 0.00 0.00 0.00 2.71
492 496 3.641434 ATGGGGTCTGAACTCTGAATG 57.359 47.619 0.00 0.00 0.00 2.67
493 497 5.983333 ATAATGGGGTCTGAACTCTGAAT 57.017 39.130 0.00 0.00 0.00 2.57
494 498 5.250543 TCAATAATGGGGTCTGAACTCTGAA 59.749 40.000 0.00 0.00 0.00 3.02
495 499 4.782691 TCAATAATGGGGTCTGAACTCTGA 59.217 41.667 0.00 0.00 0.00 3.27
496 500 5.102953 TCAATAATGGGGTCTGAACTCTG 57.897 43.478 0.00 0.00 0.00 3.35
497 501 4.384647 GCTCAATAATGGGGTCTGAACTCT 60.385 45.833 0.00 0.00 0.00 3.24
498 502 3.879892 GCTCAATAATGGGGTCTGAACTC 59.120 47.826 0.00 0.00 0.00 3.01
499 503 3.266772 TGCTCAATAATGGGGTCTGAACT 59.733 43.478 0.00 0.00 0.00 3.01
500 504 3.620488 TGCTCAATAATGGGGTCTGAAC 58.380 45.455 0.00 0.00 0.00 3.18
501 505 4.314522 TTGCTCAATAATGGGGTCTGAA 57.685 40.909 0.00 0.00 0.00 3.02
502 506 4.524802 ATTGCTCAATAATGGGGTCTGA 57.475 40.909 0.00 0.00 0.00 3.27
503 507 7.170965 AGTATATTGCTCAATAATGGGGTCTG 58.829 38.462 6.43 0.00 36.90 3.51
504 508 7.335127 AGTATATTGCTCAATAATGGGGTCT 57.665 36.000 6.43 0.00 36.90 3.85
505 509 7.281100 GCTAGTATATTGCTCAATAATGGGGTC 59.719 40.741 6.43 0.00 36.90 4.46
506 510 7.112779 GCTAGTATATTGCTCAATAATGGGGT 58.887 38.462 6.43 0.00 36.90 4.95
507 511 7.112122 TGCTAGTATATTGCTCAATAATGGGG 58.888 38.462 6.43 0.71 36.90 4.96
508 512 8.618677 CATGCTAGTATATTGCTCAATAATGGG 58.381 37.037 6.43 0.00 36.90 4.00
601 613 4.186159 GCTCAGGCATTGCATTTACAATT 58.814 39.130 11.39 0.00 38.19 2.32
669 681 3.002102 CCTCCCATTTTTGCAAATTCCG 58.998 45.455 13.65 2.25 29.41 4.30
677 689 2.738743 TCTCATCCCTCCCATTTTTGC 58.261 47.619 0.00 0.00 0.00 3.68
678 690 4.539726 TCATCTCATCCCTCCCATTTTTG 58.460 43.478 0.00 0.00 0.00 2.44
890 903 3.003173 TGGAGGTGGAGGCGAAGG 61.003 66.667 0.00 0.00 0.00 3.46
891 904 2.266055 GTGGAGGTGGAGGCGAAG 59.734 66.667 0.00 0.00 0.00 3.79
892 905 3.319198 GGTGGAGGTGGAGGCGAA 61.319 66.667 0.00 0.00 0.00 4.70
893 906 4.316823 AGGTGGAGGTGGAGGCGA 62.317 66.667 0.00 0.00 0.00 5.54
894 907 3.775654 GAGGTGGAGGTGGAGGCG 61.776 72.222 0.00 0.00 0.00 5.52
939 952 3.602513 CTGCAGAGCTCAACCGCCT 62.603 63.158 17.77 0.00 0.00 5.52
984 1011 4.344865 ATCGGGGCGTGGTTGCTT 62.345 61.111 0.00 0.00 34.52 3.91
1055 1082 3.918220 CGCCGTCATCGAAGCAGC 61.918 66.667 0.00 0.00 39.71 5.25
1315 1354 1.488705 TTGTCCCACTTCTGGCCGAT 61.489 55.000 0.00 0.00 36.00 4.18
1655 1706 3.002348 GGCTGTGTTAATTACCTCGATGC 59.998 47.826 0.00 0.00 0.00 3.91
1688 1739 0.872388 CAAGGGTTCAAGGTACGTGC 59.128 55.000 0.00 0.00 37.84 5.34
1689 1740 2.536761 TCAAGGGTTCAAGGTACGTG 57.463 50.000 0.00 0.00 39.73 4.49
1701 1752 2.840651 ACGAGAGGAATTGATCAAGGGT 59.159 45.455 14.54 1.49 0.00 4.34
1703 1754 4.507710 TGAACGAGAGGAATTGATCAAGG 58.492 43.478 14.54 0.00 0.00 3.61
1704 1755 6.484540 CATTGAACGAGAGGAATTGATCAAG 58.515 40.000 14.54 0.00 0.00 3.02
1706 1757 4.333649 GCATTGAACGAGAGGAATTGATCA 59.666 41.667 0.00 0.00 0.00 2.92
1707 1758 4.333649 TGCATTGAACGAGAGGAATTGATC 59.666 41.667 0.00 0.00 0.00 2.92
1708 1759 4.264253 TGCATTGAACGAGAGGAATTGAT 58.736 39.130 0.00 0.00 0.00 2.57
1710 1761 3.438087 ACTGCATTGAACGAGAGGAATTG 59.562 43.478 0.00 0.00 0.00 2.32
1711 1762 3.679389 ACTGCATTGAACGAGAGGAATT 58.321 40.909 0.00 0.00 0.00 2.17
1739 1792 5.682049 AATCGACGAGATCTTTTAACACG 57.318 39.130 3.01 0.00 38.98 4.49
1747 1800 4.081642 TCCTGGAAAAATCGACGAGATCTT 60.082 41.667 3.01 0.00 38.98 2.40
1749 1802 3.552294 GTCCTGGAAAAATCGACGAGATC 59.448 47.826 3.01 0.00 38.98 2.75
1750 1803 3.522553 GTCCTGGAAAAATCGACGAGAT 58.477 45.455 3.01 0.00 42.43 2.75
2222 2281 6.252441 CGAAACGAATTAAAATATGCCAGCAA 59.748 34.615 0.00 0.00 0.00 3.91
2224 2283 5.741982 ACGAAACGAATTAAAATATGCCAGC 59.258 36.000 0.00 0.00 0.00 4.85
2225 2284 7.586300 CCTACGAAACGAATTAAAATATGCCAG 59.414 37.037 0.00 0.00 0.00 4.85
2227 2286 6.854381 CCCTACGAAACGAATTAAAATATGCC 59.146 38.462 0.00 0.00 0.00 4.40
2228 2287 6.358822 GCCCTACGAAACGAATTAAAATATGC 59.641 38.462 0.00 0.00 0.00 3.14
2229 2288 7.375017 GTGCCCTACGAAACGAATTAAAATATG 59.625 37.037 0.00 0.00 0.00 1.78
2493 2555 0.723414 ACGAGAATTGCAGCATCGTG 59.277 50.000 18.58 5.27 44.23 4.35
2603 2665 5.007332 TCGCTTTCCTAAGTGAAACAAGAAC 59.993 40.000 0.00 0.00 45.33 3.01
2634 2696 6.348540 GCGATCTGCTTTCCTCTAAAAGAAAA 60.349 38.462 0.75 0.00 41.73 2.29
2697 2761 2.165437 GCAAATTTGCGGGTCATCCTTA 59.835 45.455 26.15 0.00 45.11 2.69
2700 2764 3.049227 GCAAATTTGCGGGTCATCC 57.951 52.632 26.15 0.00 45.11 3.51
2720 2784 2.209690 TGTCCGCATATAGATCCCGA 57.790 50.000 0.00 0.00 0.00 5.14
2724 2788 2.743183 GCCCCATGTCCGCATATAGATC 60.743 54.545 0.00 0.00 33.30 2.75
2728 2792 0.324614 CTGCCCCATGTCCGCATATA 59.675 55.000 0.00 0.00 33.30 0.86
2731 2795 1.920734 TAACTGCCCCATGTCCGCAT 61.921 55.000 0.00 0.00 35.32 4.73
2732 2796 2.535485 CTAACTGCCCCATGTCCGCA 62.535 60.000 0.00 0.00 0.00 5.69
2740 2804 4.077184 CGTCCGCTAACTGCCCCA 62.077 66.667 0.00 0.00 38.78 4.96
2763 2827 0.679960 GTTGGATGGCCGCTTTAGGT 60.680 55.000 0.00 0.00 36.79 3.08
2766 2830 2.403378 GCGTTGGATGGCCGCTTTA 61.403 57.895 0.00 0.00 43.81 1.85
2812 2877 7.925043 TGCATTAATTTCCTTCGGTTAGTTA 57.075 32.000 0.00 0.00 0.00 2.24
2822 2887 5.837437 TGTCGTGTTTGCATTAATTTCCTT 58.163 33.333 0.00 0.00 0.00 3.36
2843 2908 9.829507 TCTCATTTGGTTTGTATGAAAATTTGT 57.170 25.926 0.00 0.00 0.00 2.83
2924 2989 5.789574 AGGATAGGTTTATGGTTGGAACA 57.210 39.130 0.00 0.00 0.00 3.18
2925 2990 6.541278 GTGTAGGATAGGTTTATGGTTGGAAC 59.459 42.308 0.00 0.00 0.00 3.62
2926 2991 6.353255 GGTGTAGGATAGGTTTATGGTTGGAA 60.353 42.308 0.00 0.00 0.00 3.53
2928 2993 5.374071 GGTGTAGGATAGGTTTATGGTTGG 58.626 45.833 0.00 0.00 0.00 3.77
2930 2995 4.102054 CCGGTGTAGGATAGGTTTATGGTT 59.898 45.833 0.00 0.00 0.00 3.67
2932 2997 3.556423 GCCGGTGTAGGATAGGTTTATGG 60.556 52.174 1.90 0.00 0.00 2.74
2934 2999 2.298163 CGCCGGTGTAGGATAGGTTTAT 59.702 50.000 6.91 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.